################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:24:34 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/DNA_gyraseB.html
################################################################################################
#====================================
# Aligned_structures: 2
#   1: 1ei1a.pdb
#   2: 1kija.pdb
#
# Length:        172
# Identity:       75/172 ( 43.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     75/172 ( 43.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            0/172 (  0.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ei1a.pdb               1  GIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGT   60
1kija.pdb               1  GVASFAKALAEGEDLLYEKPFLIRGTHGEVEVEVGFLHTQGYNAEILTYANMIPTRDGGT   60
                           G   F   L           F          VEV      G    I    N IP RDGGT

1ei1a.pdb              61  HLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKL  120
1kija.pdb              61  HLTAFKSAYSRALNQYAKKAGLNKEKGPQPTGDDLLEGLYAVVSVKLPNPQFEGQTKGKL  120
                           HL  F  A  R LN Y  K G  K      TGDD  EGL AVVSVK P P F  QTK KL

1ei1a.pdb             121  VSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMT  172
1kija.pdb             121  LNPEAGTAVGQVVYERLLEILEENPRIAKAVYEKALRAAQAREAARKARELV  172
                              E   AV Q   E L E L ENP  AK V  K   AA AREAAR ARE  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################