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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 09:43:00 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/DMRL_synthase.html
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#====================================
# Aligned_structures: 5
#   1: 1c2ya.pdb
#   2: 1c41a.pdb
#   3: 1di0a.pdb
#   4: 1ejba.pdb
#   5: 1rvva.pdb
#
# Length:        195
# Identity:       10/195 (  5.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     37/195 ( 19.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           62/195 ( 31.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1c2ya.pdb               1  MNELE--------GY-VTKAQSFRFAIVVARFNEFVTRRLMEGALDTFKKYS----VNE-   46
1c41a.pdb               1  G-P-T--------PQQHD-GSALRIGIVHARWNETIIEPLLAGTKAKLLACG----VK-E   44
1di0a.pdb               1  --------------------TSFKIAFIQARWHADIVDEARKSFVAELAAKTGGSV----   36
1ejba.pdb               1  -----AVKGLGKPDQVYD-GSKIRVGIIHARWNRVIIDALVKGAIERMASLG----VE-E   49
1rvva.pdb               1  MNIIQ--------GN-LV-GTGLKIGIVVGRFNDFITSKLLSGAEDALLRHG----VD-T   45
                                                     i  aR n  i   l  g                 

1c2ya.pdb              47  -DIDVVWVPGAYELGVTAQALGKS-G------KYHAIVCLGAVVKGDTSHYDAVVNSASS   98
1c41a.pdb              45  SNIVVQSVPGSWELPIAVQRLYSASQLQST-GPFDALIAIGVLIKGETMHFEYIADSVSH  103
1di0a.pdb              37  -EVEIFDVPGAYEIPLHAKTLART-G------RYAAIVGAAFVIDGGIYDHDFVATAVIN   88
1ejba.pdb              50  NNIIIETVPGSYELPWGTKRFVDRQAKL--GKPLDVVIPIGVLIKGSTMHFEYISDSTTH  107
1rvva.pdb              46  NDIDVAWVPGAFEIPFAAKKMAET-K------KYDAIITLGTVIRGATTHYDYVCNEAAK   98
                             i    VPG  E p                    a    g  i G t h          

1c2ya.pdb              99  GVLSAGLNSGVPCVFGVLTCDN-------MDQAINRAGG----KAGNKGAESALTAIEMA  147
1c41a.pdb             104  GLMRVQLDTGVPVIFGVLTVLT-------DDQAKARAGVIE--GSHNHGEDWGLAAVEMG  154
1di0a.pdb              89  GMMQVQLETEVPVLSVVLTPHHFHESKEHHDFFHAHFK--------VKGVEAAHAALQIV  140
1ejba.pdb             108  ALMNLQEKVDMPVIFGLLTCMT-------EEQALARAGIDEAHSMHNHGEDWGAAAVEMA  160
1rvva.pdb              99  GIAQAANTTGVPVIFGIVTTEN-------IEQAIERAGT----KAGNKGVDCAVSAIEMA  147
                           g         vPv fg lT            qa  rag        n G      A em 

1c2ya.pdb             148  SLFEHHLK-------  155
1c41a.pdb             155  VRRRDWAAGKT----  165
1di0a.pdb             141  SERSRIAA-------  148
1ejba.pdb             161  VKFG-------KNAF  168
1rvva.pdb             148  NLNRSFE--------  154
                                          


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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