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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:23:34 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/DHDPS.html
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#====================================
# Aligned_structures: 2
#   1: 1dhpa.pdb
#   2: 1nal1.pdb
#
# Length:        294
# Identity:       69/294 ( 23.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     69/294 ( 23.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            5/294 (  1.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1dhpa.pdb               1  M-FTGSIVAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADV   59
1nal1.pdb               1  -NLRGVMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQV   59
                               G   A  TP D       ASL  L       G       G TGE       E   V

1dhpa.pdb              60  VMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHF  119
1nal1.pdb              60  LEIVAEEGKGKIKLIAHVGCVTTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHY  119
                                    G I  IA  G   TAE   L       G      VTP Y   S E    H 

1dhpa.pdb             120  KAIAEHT-DLPQILYNVPSRTGCDLLPETVGRLAKVKNIIGIKEATGNLTRVNQIKELVS  178
1nal1.pdb             120  RAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGALKQTSGDLYQMEQIRREH-  178
                            AI      LP   YN P   G  L       L         K   G L    QI     

1dhpa.pdb             179  DDFVLLSGDDASALDFMQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLMP  238
1nal1.pdb             179  PDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTECNK  238
                            D VL  G D         G  G I  T N          K   EG    A         

1dhpa.pdb             239  LHNKLFVEPNPIPVKWACKELGLVATDTLRLPMTPITDSGRETVRAALKHAGLL  292
1nal1.pdb             239  VIDLLIKTGVFRGLKTVLHYMDVVSVPLCRKPFGPVDEKYQPELKALAQQLMQ-  291
                               L         K        V     R P  P          A        


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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