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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:20:26 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/DAO.html
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#====================================
# Aligned_structures: 2
#   1: 1c0pa.pdb
#   2: 1evia.pdb
#
# Length:        393
# Identity:       91/393 ( 23.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     91/393 ( 23.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           83/393 ( 21.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1c0pa.pdb               1  LMMHSQKRVVVLGSGVIGLSSALILARK-G-----YSVHILARDLPEDVSSQTFASPWAG   54
1evia.pdb               1  ------MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFT--P---FTTTDVAA   49
                                  RVVV G GVIGLS AL              V   A                A 

1c0pa.pdb              55  ANWTPFMTLT----DGPRQAKWEESTFKKWVELVPTGH-----AMWLKGTRRFAQNEDGL  105
1evia.pdb              50  GLWQPY----TSEPSNPQEANWNQQTFNYLLSHIGSPNAANMGLTP-VSGYNLFREAV--  102
                             W P           P  A W   TF                                 

1c0pa.pdb             106  LG--HWYKDITPNYRPLPSSECP----PGAIGVTYDTLSVHAPKYCQYLARELQKLGATF  159
1evia.pdb             103  --PDPYWKDMVLGFRKLTPRELDMFPDY-RYGWFNTSLILEGRKYLQWLTERLTERGVKF  159
                                  KD     R L   E          G     L     KY Q L   L   G  F

1c0pa.pdb             160  ERRTVTSLEQAF-DGADLVVNATGLGAKSIAG-IDDQAAEPIRGQTVLVKSP-CKRCTMD  216
1evia.pdb             160  FLRKVESFEEVARGGADVIINCTGVWAG-V--LQPDPLLQPGRGQIIKVDAPWLKNFIIT  216
                             R V S E     GAD   N TG  A        D    P RGQ   V  P  K     

1c0pa.pdb             217  SSDPAS----PAYIIPRPGGEVICGGTYGVGDWDLSVNPETVQRILKHCLRLDPTISSDG  272
1evia.pdb             217  HD-LERGIYNSPYIIPGL-QAVTLGGTFQVGNWNEINNIQDHNTIWEGCCRLEPTLKD--  272
                                       YIIP     V  GGT  VG W    N      I   C RL PT     

1c0pa.pdb             273  TIEGIEVLRHNVGLRPARRGGPRVEAERIVLPLDRTKSPLSLGRGSARAAKE-KEVTLVH  331
1evia.pdb             273  ----AKIVGEYTGFRPV-RPQVRLEREQLRF--------------------GSSNTEVIH  307
                                       G RP  R   R E E                                H

1c0pa.pdb             332  AYGFSSAGYQQSWGAAEDVAQLVDEAFQRYHG-  363
1evia.pdb             308  NYGHGGYGLTIHWGCALEVAKLFGKVLEERNLL  340
                            YG    G    WG A  VA L           


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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