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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:18:36 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/CytoC_RC.html
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#====================================
# Aligned_structures: 2
#   1: 1eysc.pdb
#   2: 6prcc.pdb
#
# Length:        348
# Identity:      135/348 ( 38.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    135/348 ( 38.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           54/348 ( 15.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1eysc.pdb               1  -CEGPPPGTEQIGYRGVGMENYYVKRQRALSIQANQ-PVESLPAADSTGPKASEVYQSVQ   58
6prcc.pdb               1  CFEPPPATTTQTGFRGLSMGEVLHPATVKAKKERDAQYPPALAAVKAEGPPVSQVYKNVK   60
                             E PP  T Q G RG  M                      L A    GP  S VY  V 

1eysc.pdb              59  VLKDLSVGEFTRTMVAVTTWVSPKEGCNYCHVPGNWASDDIYTKVVSRRMFELVRAANSD  118
6prcc.pdb              61  VLGNLTEAEFLRTMTAITEWVSPQEGCTYCHDENNLASEAKYPYVVARRMLEMTRAINTN  120
                           VL  L   EF RTM A T WVSP EGC YCH   N AS   Y  VV RRM E  RA N  

1eysc.pdb             119  WKAHVAETGVTCYTCHRGNPVPKYAWVTDPG--------PKYPSGLKPTGQNYGSKTV--  168
6prcc.pdb             121  WTQHVAQTGVTCYTCHRGTPLPPYVRYLE--PTLPLNNRETPTHV-------------ER  165
                           W  HVA TGVTCYTCHRG P P Y                                    

1eysc.pdb             169  --AYASLP-------------FDPLTPFLDQA-NEIRITGNAALAGS-------NPASLK  205
6prcc.pdb             166  VETRSGYVVRLAKYTAYSALNYDPFTMFLANDKRQVRVVPQTALPL-VGVSRGKERRPLS  224
                                                 DP T FL       R     AL              L 

1eysc.pdb             206  QAEWTFGLMMNISDSLGVGCTSCHNTRAF-NDWTQSTPKRTTAWYAIRHVRDINQNYIWP  264
6prcc.pdb             225  DAYATFALMMSISDSLGTNCTFCHNAQTFESWGKKSTPQRAIAWWGIRMVRDLNMNYLAP  284
                            A  TF LMM ISDSLG  CT CHN   F      STP R  AW  IR VRD N NY  P

1eysc.pdb             265  LNDVLPASRKGPYGDPLRVSCMTCHQAVNKPLYGAQMAKDYPGLYK--  310
6prcc.pdb             285  LNASLPASRLGRQGEAPQADCRTCHQGVTKPLFGASRLKDYPELGPIK  332
                           LN  LPASR G  G      C TCHQ V KPL GA   KDYP L    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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