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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:14:44 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/CYCc.html
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#====================================
# Aligned_structures: 2
#   1: 1azsa.pdb
#   2: 1azsb.pdb
#
# Length:        206
# Identity:       48/206 ( 23.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     48/206 ( 23.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           33/206 ( 16.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1azsa.pdb               1  DMMFHKIYIQKHDNVSILFADIEGFTSLAS---QC-TAQELVMTLNELFARFDKLAAE--   54
1azsb.pdb               1  --------HQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPK   52
                                    Q  D V   FA I  F              E    LNE  A FD L     

1azsa.pdb              55  NH-CLRIKILGDCYYCVSGLPEA--RADHAHCCVEMGMDMIEAISLVREMTGVNVNMRVG  111
1azsb.pdb              53  FSGVEKIKTIGSTYMAATGLSA-IRQYMHIGTMVEFAYALVGKLDAINKHSFNDFKLRVG  111
                                 IK  G  Y    GL        H    VE                      RVG

1azsa.pdb             112  IHSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAGRIHITKATLSYLNG-DYEVEPG  170
1azsb.pdb             112  INHGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGVLDKIQVTEETSLILQTLGYTCTCR  171
                           I  G V  GV G  K Q D W N V  A  M   G    I  T  T   L    Y     

1azsa.pdb             171  CGGERNAYLK-----EHSIETFLIL-  190
1azsb.pdb             172  GI--------INVKGKGDLKTYFVNT  189
                                               T     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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