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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 01:39:32 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/CUB.html
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#====================================
# Aligned_structures: 3
#   1: 1sfp.pdb
#   2: 1sppa.pdb
#   3: 1sppb.pdb
#
# Length:        121
# Identity:       22/121 ( 18.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     77/121 ( 63.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           19/121 ( 15.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1sfp.pdb                1  ------LPRNTNCGGILKEESGVIAT---YYGPKTNCVWTIQMPPEYHVRVSIQYLQLNC   51
1sppa.pdb               1  -------LDYHACGGRLTDDYGTIFT---YKGPKTECVWTLQVDPKYKLLVSIPTLNLTC   50
1sppb.pdb               1  ARINGP----DECGRVIKDTSGSISNTDR---QKNLCTWTILMKPDQKVRMAIPYLNLAC   53
                                       CGg lkd sG I t      pKt CvWTiqm P ykvrvsIpyLnL C

1sfp.pdb               52  NKESLEIIDGLPGSPVLGKICEGSLMDYRSSGSIMTVKYIREPEHPASFYEVLYFQDP-Q  110
1sppa.pdb              51  GKEYVEVLEGAPGSKSLGKFCEGLSILNRGSSGMTVKYKRD-SGHPASPYEIIFLRDSQG  109
1sppb.pdb              54  GKEYVEVFDGLLSGPSYGKLCAGAAIVFLSTANTMTIKYNRISGNSSSPFLIYFYGSS-P  112
                           gKEyvEv dGlpgspslGK CeG  i  rss   mt ky r sghpaSpyei f  ds  

1sfp.pdb              111  A  111
1sppa.pdb                  -     
1sppb.pdb                  -     
                            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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