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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 05:49:36 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/CPSase_L_chain.html
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#====================================
# Aligned_structures: 4
#   1: 1a9xa1.pdb
#   2: 1a9xa2.pdb
#   3: 1dv1a.pdb
#   4: 1gsoa.pdb
#
# Length:        149
# Identity:        2/149 (  1.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     18/149 ( 12.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           53/149 ( 35.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a9xa1.pdb              1  MPKRTD--I-KSILILGAGPIVIGQACEFDYSGAQACKALREE--GYRVINVNS--NPAT   53
1a9xa2.pdb              1  ------STDREKIMVLGGGPNRIGQGIEFDYCCVHASLALRED--GYETIMVNC--NPET   50
1dv1a.pdb               1  --------L-DKIVIAN-----------RGEIALRILRACKEL--GIKTVAVHSSADRDL   38
1gsoa.pdb               1  -----------KVLVIG-----------NGGREHALAWKAAQSPLVETVFVAPG----NA   34
                                      ki   g                     a  e   g     v        

1a9xa1.pdb             54  IMTDPEMA-DATYIE-------P-IHWEVVRKIIEKERPDAVLPTMGGQTAL--N-CALE  101
1a9xa2.pdb             51  VSTDYDTS-DRLYFE-------P-VTLEDVLEIVRIEKPKGVIVQYGGQTPL--K-LARA   98
1dv1a.pdb              39  KHVL--LA-DETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPG--YGFLSENANFAEQ   93
1gsoa.pdb              35  GTAL--EPALQNVAI-------GVTDIPALLDFAQNEKIDLTIVG--PEAPL-VKGVVDT   82
                                    d                          e              l     a  

1a9xa1.pdb            102  LERQGVLEEFGVTMIGATADAIDKAE---  127
1a9xa2.pdb             99  LEAAG-V----P-VIGTSPDAIDRAEDRE  121
1dv1a.pdb              94  VERSG-F----I-FIGPKAETIRLMG---  113
1gsoa.pdb              83  FRAAG-L----K-IFGPTAGAAQLEG---  102
                            e  G         iG  a ai       


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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