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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 01:38:00 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/CPS.html
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#====================================
# Aligned_structures: 3
#   1: 1a9xa1.pdb
#   2: 1a9xa2.pdb
#   3: 1bnca.pdb
#
# Length:        284
# Identity:       20/284 (  7.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    104/284 ( 36.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          100/284 ( 35.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a9xa1.pdb              1  ---RFQHAVERLKLKQPAN--A-TVTAIEMAVEKAKEIGYPLVVRA---------AMEIV   45
1a9xa2.pdb              1  DRRRFDVAMKKIGLETARS--G-IAHTMEEALAVAADVGFPCIIRPSFTMGGSG--GGIA   55
1bnca.pdb               1  DKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIK---------RGMRVV   51
                              rf  Amkk gl       g     me a a Ak iGyP iir           m iv

1a9xa1.pdb             46  YDEADLRRYFQTA-------VLL-DHFLDDAVEVDVDAICDG-EMVLIGGIMEHIEQAGV   96
1a9xa2.pdb             56  YNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGI  115
1bnca.pdb              52  RGDAELAQSISMTRAEAK-MVYM-EKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ---  106
                           y  ael              vll d  L    eve  v  Dg  n ii    e   q   

1a9xa1.pdb             97  HS---GDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVR-GLMNVQFAVK--NNEVYLIE  150
1a9xa2.pdb            116  HT---GDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIE  172
1bnca.pdb             107  --RRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYR-GAGTFEFLFE--NGEFYFIE  161
                                gds   aPA tlt e    mr    k   eigvr G  nvqFav   Nge y IE

1a9xa1.pdb            151  VNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQ---------GVTKEVIPPYYSVKE  201
1a9xa2.pdb            173  MNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKI  232
1bnca.pdb             162  MNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPL--------------SIKQE--------  199
                           mNpR  r  p  skaTGvplaKvaar aaG  L              s e          

1a9xa1.pdb            202  VVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGS-  244
1a9xa2.pdb            233  PRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGL-  275
1bnca.pdb             200  ------EVH----------------------------------V  203
                                 kf                                    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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