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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 01:35:27 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/COX3.html
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#====================================
# Aligned_structures: 3
#   1: 1fftc.pdb
#   2: 1qlec.pdb
#   3: 2occc.pdb
#
# Length:        281
# Identity:       29/281 ( 10.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    127/281 ( 45.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          101/281 ( 35.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1fftc.pdb                  ------------------------------------------------------------     
1qlec.pdb               1  ---AHVKNHDYQILPPSIWPFFGAIGAFVMLTGAVAWMKGITFFGLPVEGPWMFLIGLVG   57
2occc.pdb               1  MTH---QTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHF--------NSMTLLMIGLTT   49
                                                                                       

1fftc.pdb               1  -----------------------HDAGGTKIFGFWIYLMSDCILFSILFATYAVLVNGT-   36
1qlec.pdb              58  VLYVMFGWWADVVNEG-ETGEHTPVVRIGLQYGFILFIMSEVMFFVAWFWAFIKNALYPM  116
2occc.pdb              50  NMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPT  109
                                                  p v  gl yGfilfimSev fF   Fwaf    l p 

1fftc.pdb              37  -----------AGGPTGKDIF-ELPFVLVETFLLLFSSITYGMAAIAMYKNNKSQVISWL   84
1qlec.pdb             117  GPDSPIKDGVWPPEGIVTFDPWHLPLINTLILLLSGVAVTWAHHAF-VLEGDRKTTINGL  175
2occc.pdb             110  P----ELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSL-M-EGDRKHMLQAL  163
                                      pp gi    p elPl nt  lLlsgvsiTwahha  m egdrk  i  L

1fftc.pdb              85  ALTWLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSGLIWMAVLMV  144
1qlec.pdb             176  IVAVILGVCFTGLQAYEYSHA--AFGL-ADTVYAGAFYMATGFHGAHVIIGTIFLFVCLI  232
2occc.pdb             164  FITITLGVYFTLLQASEYYEA--PFTI-SDGVYGSTFFVATGFHGLHVIIGSTFLIVCFF  220
                             t  lGv FtglqayEy ha   f    d vy saFf atGfHGlHViiG ifl Vc  

1fftc.pdb             145  QIARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYLMGA  185
1qlec.pdb             233  RLLKGQMTQKQHVGFEAAAWYWHFVDVVWLFLFVVIYIWGR  273
2occc.pdb             221  RQLKFHFTSNHHFGFEAGAWYWHFVDVVWLFLYVSIYWWGS  261
                           r lk   Ts  h gfea awyWHFvDVVWlflfvviY wG 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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