################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:06:33 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/CMAS.html
################################################################################################
#====================================
# Aligned_structures: 2
#   1: 1kpha.pdb
#   2: 1kpia.pdb
#
# Length:        293
# Identity:      145/293 ( 49.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    145/293 ( 49.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           12/293 (  4.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1kpha.pdb               1  -LKPHFANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQ   59
1kpia.pdb               1  QLKPPVEAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLE   60
                            LKP    V  HYD S  FF L LDP  TYSCAYFER DMTL EAQ AK  LAL KL L 

1kpha.pdb              60  PGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGW  119
1kpia.pdb              61  PGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGW  120
                           PGMTLLD GCGWG TM  AV  YDVNV GLTLS NQ  H           R K V   GW

1kpha.pdb             120  EQFDEPVDRIVSIGAFEHFG------HERYDAFFSLAHRLLP---ADGVMLLHTITGLHP  170
1kpia.pdb             121  EEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH-TITIP-DK  178
                           E FDEPVDRIVS GAFEHF              F      L                   

1kpha.pdb             171  KEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSLQPHYAK  230
1kpia.pdb             179  EEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRIGANYVP  238
                            E  E GL       RF KFI TEIFPGGRLP I  V    S  G  V R       Y  

1kpha.pdb             231  TLDLWSAALQANKGQAIALQSEEVYERYMKYLTGCAEMFRIGYIDVNQFTCQK  283
1kpia.pdb             239  TLNAWADALQAHKDEAIALKGQETCDIYMHYLRGCSDLFRDKYTDVCQFTLVK  291
                           TL  W  ALQA K  AIAL   E    YM YL GC   FR  Y DV QFT  K


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################