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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:06:28 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/CIDE-N.html
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#====================================
# Aligned_structures: 2
#   1: 1c9fa.pdb
#   2: 1d4ba.pdb
#
# Length:        137
# Identity:       19/137 ( 13.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     19/137 ( 13.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           65/137 ( 47.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1c9fa.pdb               1  -------------------------MCAVL---R-QPKCVKLRALHSAC--KFGVAARS-   28
1d4ba.pdb               1  MEYLSALNPSDLLRSVSNISSEFGRRVWTSAPPPQRPFRVCDH------KRTIRKGLTAA   54
                                                               P  V                    

1c9fa.pdb              29  -CQELLRKGCVRFQLPMPGSRLCLYEDGTEVTDDCFPGLP-----NDAELLLLTAGETWH   82
1d4ba.pdb              55  TRQELLAKALETLLLNG-VLTLVLEEDGTAVDSEDFF---QLLEDD-TCLMVLQSG--QS  107
                             QELL K      L      L L EDGT V    F             L  L  G    

1c9fa.pdb              83  GYVSD------------   87
1d4ba.pdb             108  WSP--TRSGVLHHHHHH  122
                                            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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