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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 05:29:09 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/CH.html
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#====================================
# Aligned_structures: 4
#   1: 1aa2.pdb
#   2: 1aoa1.pdb
#   3: 1aoa2.pdb
#   4: 1bhda.pdb
#
# Length:        157
# Identity:        4/157 (  2.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     16/157 ( 10.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           62/157 ( 39.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1aa2.pdb                1  ----K--------SAKDALLLWCQMKTAGYP-----NVNI----HNFTTSWRDGMAFNAL   39
1aoa1.pdb               1  --YSE--------EEKYAFVNWINKALENDPDCRHVIPMNPNTD-DLFKAVGDGIVLCKM   49
1aoa2.pdb               1  -----TLEELMKLSPEELLLRWANFHLENSG-----WQKI----NNFSADIKDSKAYFHL   46
1bhda.pdb               1  LQQ-T--------NSEKILLSWVRQTTRPYS-----QVNV----LNFTTSWTDGLAFNAV   42
                                             ll W                       nf     Dg a    

1aa2.pdb               40  IHKHRPD------L-----IDFDKLKK------SNAHYNLQNAFNLAEQHLGL-TKLLDP   81
1aoa1.pdb              50  INLSVPD------T-----IDERAINKKKLTP-FIIQENLNLALNSASAIG-CHVVNIGA   96
1aoa2.pdb              47  LNQIA--PKGQKEGEPRIDINMSGFN------ETDDLKRAESMLQQADKLG-C-RQFVTP   96
1bhda.pdb              43  LHRHKPD------L-----FSWDKVVK------MSPIERLEHAFSKAQTYLGI-EKLLDP   84
                                              i                   l  a   A            p

1aa2.pdb               82  EDISVDHPDEKSIITYVVTYYHYFSKM----------  108
1aoa1.pdb              97  EDLRA--GKPHLVLGLLWQIIKIGLFADIELSRNEAL  131
1aoa2.pdb              97  ADVVS--GNPKLNLAFVANLFN---------------  116
1bhda.pdb              85  EDVAVRLPDKKSIIMYLTSLFEVL-------------  108
                           eD        k                          


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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