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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:05:09 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/CDC48.html
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#====================================
# Aligned_structures: 2
#   1: 1cr5a.pdb
#   2: 1qcsa.pdb
#
# Length:        215
# Identity:       43/215 ( 20.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     43/215 ( 20.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           62/215 ( 28.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1cr5a.pdb               1  TRHL-----KVSNCPNNSYALANVAAVSPNDFPNNIYIIIDN-----LFVFTTRHSNDIP   50
1qcsa.pdb               1  ----NAGRSQAARCPTDELSLSNCAVVSEKDYQSGQHVIVR-TSPNHKYIFTLRTHPSVV   55
                                        CP     L N A VS  D       I           FT R      

1cr5a.pdb              51  PGTIGFNGNQRTWGGWSLNQDVQAKAFDLFKYSG-KQSYLGSIDIDISFRA-------VF  102
1qcsa.pdb              56  PGSVAFSLPQRKWAGLSIGQEIEVALYSFD----KAKQCIGT-TIEIDFLQKKNIDSNPY  110
                           PG   F   QR W G S  Q                    G   I I F           

1cr5a.pdb             103  DQDELAKQFVRCYESQIFSPTQYLIMEFQGHFFDLKIRNVQAIDLGDIEPTSAVA-----  157
1qcsa.pdb             111  DTD-KAAEFIQQFNNQAFSVGQQLVFSFNDKLFGLLVKDIEAD------------PSILK  157
                           D D  A  F      Q FS  Q L   F    F L      A                  

1cr5a.pdb             158  --TGIETKGILTKQTQINFFKGR------------  178
1qcsa.pdb             158  RQK-I-EVGLVVGNSQVAFEKAENSSLNLIGKAKT  190
                               I   G      Q  F K              


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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