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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:03:35 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/CC4.html
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#====================================
# Aligned_structures: 2
#   1: 1etpa.pdb
#   2: 1fcdc.pdb
#
# Length:        201
# Identity:       43/201 ( 21.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     43/201 ( 21.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           38/201 ( 18.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1etpa.pdb               1  AGDAE--AGQGKVAVCGACHGVDGNSPAPNFPKLAGQGERYLLKQLQDIKAGSTPGAPEG   58
1fcdc.pdb               1  -----EPTAEMLTNNCAGCHGTHGNSVGPASPSIAQMDPMVFVEVMEGFKSG--------   47
                                          C  CHG  GNS  P  P  A              K G        

1etpa.pdb              59  VGRKVLEMTGMLDPLSDQDLEDIAAYFSSQKGSVGYAD--PALAKQGEKLFRGGKLDQGM  116
1fcdc.pdb              48  -EIASTIMGRIAKGYSTADFEKMAGYFKQQTYQPAKQSFDTALADTGAKLHDK-------   99
                                  M       S  D E  A YF  Q           ALA  G KL          

1etpa.pdb             117  PACTGCHAPNGVGN--D-LAGFPKLGGQHAAYTAKQLTDFREGNRTNDGDTMIMRGVAA-  172
1fcdc.pdb             100  -YCEKCHVEGGK--PLADEEDYHILAGQWTPYLQYAMSDFREERRP---MEKKMASKLRE  153
                             C  CH   G             L GQ   Y      DFRE  R        M      

1etpa.pdb             173  KL---SNKDIEALSSYIQGLH  190
1fcdc.pdb             154  LLKAEGDAGLDALFAFYASQQ  174
                            L         AL        


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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