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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:02:01 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/C4.html
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#====================================
# Aligned_structures: 2
#   1: 1li1a.pdb
#   2: 1li1c.pdb
#
# Length:        231
# Identity:      142/231 ( 61.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    142/231 ( 61.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           10/231 (  4.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1li1a.pdb               1  VDHGFLVTRHSQTIDDPQCPSGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMP   60
1li1c.pdb               1  ---GYLLVKHSQTDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMP   57
                              G L   HSQT   P CP G   L  GYSLLY  G E AH QDLG AGSCL  FSTMP

1li1a.pdb              61  FLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVH  120
1li1c.pdb              58  FLYCNPGDVCYYASRNDKSYWLSTTAPLP-M-MPVAEDEIKPYISRCSVCEAPAIAIAVH  115
                           FL CN   VC  ASRND SYWLST  P P    P     I P ISRC VCEAPA   AVH

1li1a.pdb             121  SQTIQIPPCPSGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHG-RG  179
1li1c.pdb             116  SQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGGRG  175
                           SQ   IP CP GW SLWIGYSF MHT AG EG GQ L SPGSCLE FR  PFIEC G RG

1li1a.pdb             180  TCNYYANAYSFWLATIERSE--MFKKPTPSTLKAGELRTHVSRCQVCMRRT  228
1li1c.pdb             176  TCHYYANKYSFWLTTIPE--QSFQGSPSADTLKAGLIRTHISRCQVCMKNL  224
                           TC YYAN YSFWL TI          P   TLKAG  RTH SRCQVCM   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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