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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 01:07:51 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/C2.html
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#====================================
# Aligned_structures: 3
#   1: 1a25a.pdb
#   2: 1djxa.pdb
#   3: 1rsy.pdb
#
# Length:        148
# Identity:       18/148 ( 12.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     55/148 ( 37.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           34/148 ( 23.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a25a.pdb               1  ---E-RRGRIYIQAHIDR---EVLIVVVRDAKNLVPMDP-N-GLSDPYVKLKLIP----D   47
1djxa.pdb               1  DQH-P-SATLFVKISIQDWRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRD-   57
1rsy.pdb                1  ----EKLGKLQYSLDYDFQN-NQLLVGIIQAAELPALDM-G-GTSDPYVKVFLLP----D   49
                                  g l     id    e L V ii a  Lp  d    g sDPyVkv l p     

1a25a.pdb              48  PKSESKQKTKTIKCSL-NPEWNETFRFQLK-ESDKDRRLSVEIWDWDLTSRNDFMGSLSF  105
1djxa.pdb              58  ---TGSRQTAVITNNGFNPRWDMEFEFEVT--VPDLALVRFMVEDYDSSSKNDFIGQSTI  112
1rsy.pdb               50  --KKKKFETKVHRKTL-NPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKV  106
                                k  Tkvi   l NP wne F F v         l   v D D  SknDfiG    

1a25a.pdb             106  GISELQ-KAGVDGWFKLLSQEEGEYFNV  132
1djxa.pdb             113  PWNSLKQ---GYRHVHLLSKNG------  131
1rsy.pdb              107  PMNTVDFGHVTEEWRDLQSA--------  126
                           p n l        w  LlS         


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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