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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 01:03:19 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Band_41_NME.html
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#====================================
# Aligned_structures: 3
#   1: 1ef1a.pdb
#   2: 1gc7a.pdb
#   3: 1gg3a.pdb
#
# Length:        306
# Identity:       69/306 ( 22.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    245/306 ( 80.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           39/306 ( 12.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ef1a.pdb               1  ---TISVRVTT-D-AELEFAIQPNTT-GKQLFDQVVKTIGLREVWFF-GLQYQDTKGFST   53
1gc7a.pdb               1  MPKPINVRVTT-MDAELEFAIQPNTT-GKQLFDQVVKTVGLREVWFF-GLQYVDSKGYST   57
1gg3a.pdb               1  ----MHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNA--TSKT   54
                               i vrVtt d aelEfaiqpntt gkqLfdqvvkt gLrEvwFf glqy d  g sT

1ef1a.pdb              54  WLKLNKKVTAQD-VRKESP-LLFKFRAKFYPEDVSEELIQDITQRLFFLQVKEGILNDDI  111
1gc7a.pdb              58  WLKLNKKVTQQD-VKKENP-LQFKFRAKFFPEDVSEELIQEITQRLFFLQVKEAILNDEI  115
1gg3a.pdb              55  WLDSAKEIKKQVR----GVPWNFTFNVKFYPPDPAQ-LTEDITRYYLCLQLRQDIVAGRL  109
                           WLklnKkvt Qd      p l FkFraKFyPeDvse LiqdITqrlffLQvke Ilnd i

1ef1a.pdb             112  YCPPETAVLLASYAVQSKYGDFNKEVHKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVW  171
1gc7a.pdb             116  YCPPETAVLLASYAVQAKYGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNW  175
1gg3a.pdb             110  PCSFATLALLGSYTIQSELGDYDPELHGVDYVSDFKLAPN-------Q-TKELEEKVMEL  161
                           yCppeTavLLaSYavQskyGDynkE Hk gYla dkLlPq       l k qwEEriq w

1ef1a.pdb             172  HEEHRG-LREDAVLEYLKIAQDLE-YGVNYFSIKNKKGSELWLGVDALGLNIYEQNDRLT  229
1gc7a.pdb             176  HEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEHDDKLT  235
1gg3a.pdb             162  HKSYRSMTPAQADLEFLENAKKLSMYGVDLHKAKDLEGVDIILGVCSSGLLVYK-DK--L  218
                           HeehRg lreda lEyLkiAqdLe YGVnyf iKnkkG elwLGVdalGLniYe dd  t

1ef1a.pdb             230  PKIGFPWSEIRNISFNDKKFVIKPI---DK-KAPDFVFYAPRLRINKRILALCGNHELYR  285
1gc7a.pdb             236  PKIGFPWSEIRNISFNDKKFVIKPI---DK-KAPDFVFYAPRLRINKRILALCMGNHELY  291
1gg3a.pdb             219  RINRFPWPKVLKISYKRSSFFIKIRPGEQEQYESTIGFKLPSYRAAKKLWKVCVEHHTFF  278
                           pkigFPWseirnISfndkkFvIKpi   dk kapdfvFyaPrlRinKrilalC  hh   

1ef1a.pdb             286  RR-KP-  289
1gc7a.pdb             292  MRRRKP  297
1gg3a.pdb             279  R-----  279
                           r     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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