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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:57:29 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/BChl_A.html
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#====================================
# Aligned_structures: 2
#   1: 1ksaa.pdb
#   2: 4bcl.pdb
#
# Length:        359
# Identity:      276/359 ( 76.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    276/359 ( 76.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           11/359 (  3.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ksaa.pdb               1  -TTAHSDYEIVLEGGSSSWGKVKARAKVNAPPASPLLPADCDVKLNVKPLDPAKGFVRIS   59
4bcl.pdb                1  TTTAHSDYEIILEGGSSSWGQVKGRAKVNVPAAIPLLPTDCNIRIDAKPL-D--GVVRFT   57
                            TTAHSDYEI LEGGSSSWG VK RAKVN P A PLLP DC      KPL    G VR  

1ksaa.pdb              60  AVFESIVDSTKNKLTIEADIANETKERRISVGEGMVSVGDFSHTFSFEGSVVNLFYYRSD  119
4bcl.pdb               58  TKIESVVDSVKNTLNVEVDIANETKDRRIAVGEGSLSVGDFSHSFSFEGSVVNMYYYRSD  117
                              ES VDS KN L  E DIANETK RRI VGEG  SVGDFSH FSFEGSVVN  YYRSD

1ksaa.pdb             120  AVRRNVPNPIYMQGRQFHDILMKVPLDNNDLIDTWEGTVKAIGSTG-AFNDWIRDFWFIG  178
4bcl.pdb              118  AVRRNIPNPIYMQGRQFHDILMKVPLDNNDLVDTWEGFQQSIG---ANFGDWIREFWFIG  174
                           AVRRN PNPIYMQGRQFHDILMKVPLDNNDL DTWEG    IG     F DWIR FWFIG

1ksaa.pdb             179  PAFTALNEGGQRISRIEVNGLNTESGPKGPVGVSRWRFSHGGSGMVDSISRWAELFPSDK  238
4bcl.pdb              175  PAFAAINEGGQRISPIVVNSSNVEG---GPVGVTRWKFSHAGSGVVDSISRWTELFPVEQ  231
                           PAF A NEGGQRIS I VN  N E    GPVGV RW FSH GSG VDSISRW ELFP   

1ksaa.pdb             239  LNRPAQVEAGFRSDSQGIEVKVDGEFPGVSVDAGGGLRRILNHPLIPLVHHGMVGKFNNF  298
4bcl.pdb              232  LNKPASIEGGFRSDSQGIEVKVDGNLPGVSRDAGGGLRRILNHPLIPLVHHGMVGKFNDF  291
                           LN PA  E GFRSDSQGIEVKVDG  PGVS DAGGGLRRILNHPLIPLVHHGMVGKFN F

1ksaa.pdb             299  NVDAQLKVVLPKGYKIRYAAPQYRSQNLEEYRWSGGAYARWVEHVCKGGVGQFEILYAQ  357
4bcl.pdb              292  TVDTQLKIVLPKGYKIRYAAPQFRSQNLEEYRWSGGAYARWVEHVCKGGTGQFEVLYAQ  350
                            VD QLK VLPKGYKIRYAAPQ RSQNLEEYRWSGGAYARWVEHVCKGG GQFE LYAQ


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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