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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 05:09:06 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Asp_Glu_race_D.html
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#====================================
# Aligned_structures: 4
#   1: 1b74a1.pdb
#   2: 1b74a2.pdb
#   3: 1jfla1.pdb
#   4: 1jfla2.pdb
#
# Length:        140
# Identity:        2/140 (  1.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     15/140 ( 10.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           52/140 ( 37.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1b74a1.pdb              1  -MKIGIFD-S-GVGG--LTVLKAIRNRY-----R-KVDIVYLGDTARVP---------Y-   39
1b74a2.pdb              1  NKKIGVIG-T-PATVKSGAYQRKLEEGG--------ADVFAKACP----L----------   36
1jfla1.pdb              1  MKTIGILGGMGPLAT--AELFRRIVIKTPAKRDQEHPKVIIFNNPQIPD---------RT   49
1jfla2.pdb              1  FKKAGLLA-T-TGTIVSGVYEKEFSKYG--------VEIMTPT-E----DEQKDVMRGIY   45
                            kkiG                                                       

1b74a1.pdb             40  --GIR-S----KD-TIIRYSLECAGFLKDKGVDIIVVAC-NTASAYALERLKKEI-----   85
1b74a2.pdb             37  FAPLA-EEGLLEG-EITRKVVEHYLKEFKGKIDTLILGCT---HYPLL---KKEIKKFLG   88
1jfla1.pdb             50  AYILG-K----G-EDPRPQLIWTAKRLEECGADFIIMPC-NTAH-AFVEDIRKAI-----   96
1jfla2.pdb             46  EGVKAGN----LK-LGRELLLKTAKILEERGAECIIAGC-TEVSVVLK---QDDL-----   91
                                                  a  l   g d ii  C             k i     

1b74a1.pdb             86  NVPVFGVIEPGVKEALKKSR  105
1b74a2.pdb             89  DAEVVDSSEALSLSLHNFIK  108
1jfla1.pdb             97  KIPIISMIEETAKKVKELG-  115
1jfla2.pdb             92  KVPLIDPMDVIAEVAVKVAL  111
                             p     e           


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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