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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:47:40 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Asn_synthase.html
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#====================================
# Aligned_structures: 2
#   1: 1ct9a.pdb
#   2: 1jgta.pdb
#
# Length:        331
# Identity:       59/331 ( 17.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     59/331 ( 17.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           66/331 ( 19.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ct9a.pdb               1  RDWFDYDAV--K-DN-VT----DKNELRQALEDSVKSHLMSDVPYGVLLSGGLDSSIISA   52
1jgta.pdb               1  ---------TPGLSRRILPEGEAVAAVRAALEKAVAQRVTPGDTPLVVLSGGIDSSGVAA   51
                                                      R ALE  V           V LSGG DSS   A

1ct9a.pdb              53  ITKKYA--LHSFAVGLPGSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETY  110
1jgta.pdb              52  CAHRAAGELDTVSMGTDTSNEFREARAVVDHLRTRHREITIPTTELLAQLPYAVWASESV  111
                                A  L     G   S     A  V  HL T H EI     E L          E  

1ct9a.pdb             111  DVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGGYLYFHKAP---NAKELHEETVR  167
1jgta.pdb             112  DPDIIEYLLPLTALYRALD-GPERRILTGYGADIPLGGMH------REDRLPALDTVLAH  164
                           D   I    P     R          L G G D   GG               L      

1ct9a.pdb             168  KLLALHMYDCAR--ANKAMSAWGVEARVPFLDKKFLDVAMRINPQDKM-CKMEKHILREC  224
1jgta.pdb             165  DMATFDGLN---EMSPVLSTLAGHWTTHPYWDREVLDLLVSLEAGLKRRHGRDKWVLRAA  221
                                                 G     P  D   LD         K      K  LR  

1ct9a.pdb             225  FEAYLPASVAWRQKEQFSDGVGYSWIDTLKEVAAQQV--SDQQLETARFRFPYNTPTSKE  282
1jgta.pdb             222  MADALPAETVNRPKL----------S-SFSRLLLDHGVAEDRVHEAKRQVV------REL  264
                               LPA    R K                          D   E  R            

1ct9a.pdb             283  AYLYREI--------FEELFPLPSAAECVPG  305
1jgta.pdb             265  FDLTVGGGRHPSEVDTDDVVR-SVADRT---  291
                             L                     A      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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