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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:35:53 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Amino_oxidase_D2.html
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#====================================
# Aligned_structures: 2
#   1: 1f8sa.pdb
#   2: 1h83a.pdb
#
# Length:        126
# Identity:       14/126 ( 11.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     14/126 ( 11.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           27/126 ( 21.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1f8sa.pdb               1  HYRSGTKIFLTCTTKFWE-DDGIHGGKSTTD-L--PSRFIYYPNHNFTNG----VGVIIA   52
1h83a.pdb               1  DMAVYTKIFLKFPRKFWPEGKG-REFFLYASSRRGYYGVWQEFEK-----QYPDANVLLV   54
                                TKIFL    KFW    G                                  V   

1f8sa.pdb              53  YGIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDIQS---FCYP--SVIQKWSLDKYA  107
1h83a.pdb              55  TVTDEESRRIEQQSDEQTKAEIMQVLRKMFP--------GKDVPDATDILVPRWWSDRFY  106
                                                    L                           W  D   

1f8sa.pdb             108  MGGITT  113
1h83a.pdb             107  KGTFSN  112
                            G    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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