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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:29:21 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Alpha_adaptinC2.html
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#====================================
# Aligned_structures: 2
#   1: 1e42a.pdb
#   2: 1qtsa.pdb
#
# Length:        149
# Identity:       12/149 (  8.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     12/149 (  8.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           45/149 ( 30.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1e42a.pdb               1  GGYVA--------------------PKAVWLPAVKAKGLEISGTFTHRQGHIY-MEMNFT   39
1qtsa.pdb               1  -----GSPGIRLGSSEDNFARFVCKNNGVLFE--N-QLLQIGLKSEFRQN-LGRMFIFYG   51
                                                       V         L I      RQ     M     

1e42a.pdb              40  NKALQHMTDFAIQFNKN------SFGVIPSTPLAIHTPLMPNQSIDVSLPLNTLGPVMKM   93
1qtsa.pdb              52  NKTSTQFLNFTPTLIC-ADDLQTNLNLQTKPV--D-PTVDGGAQVQQVVNIECI---SDF  104
                           NK       F                                                  

1e42a.pdb              94  EPLNNLQVAVKNNIDVFYFSCLIPL-N-V  120
1qtsa.pdb             105  TEAPVLNIQFRYGGTFQNVSVKLPITLNK  133
                                L             S   P     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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