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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 00:20:52 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Adenylsucc_synt.html
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#====================================
# Aligned_structures: 3
#   1: 1dj2a.pdb
#   2: 1dj3a.pdb
#   3: 1qf5a.pdb
#
# Length:        442
# Identity:      171/442 ( 38.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    371/442 ( 83.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           21/442 (  4.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1dj2a.pdb               1  ---IGSLSQVSGVLGCQWGDEGKGKLVDILAQHFDIVARCQGGANAGHTIYNSEGKKFAL   57
1dj3a.pdb               1  ADRVSSLSNVSGVLGSQWGDEGKGKLVDVLAPRFDIVARCQGGANAGHTIYNSEGKKFAL   60
1qf5a.pdb               1  -------GNNVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVI-NGEKTVL   52
                                  snvsgVLG QWGDEGKGKlVD La rfdiVaRcQGGaNAGHTiyn eGkKfaL

1dj2a.pdb              58  HLVPSGILNEDTTCVIGNGVVVHLPGLFKEIDGLESNGVSCKGRILVSDRAHLLFDFHQE  117
1dj3a.pdb              61  HLVPSGILHEGTLCVVGNGAVIHVPGFFGEIDGLQSNGVSCDGRILVSDRAHLLFDLHQT  120
1qf5a.pdb              53  HLIPSGILRENVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVA  112
                           HLvPSGIL E ttcviGNGvV h pglfkEidgLesnGvsc gRiLvSdrahLlfD Hq 

1dj2a.pdb             118  VDGLRESELAKSFIGTTKRGIGPAYSSKVIRNGIRVGDLRHMDTLPQKLDLLLSDAAARF  177
1dj3a.pdb             121  VDGLREAELANSFIGTTKRGIGPCYSSKVTRNGLRVCDLRHMDTFGDKLDVLFEDAAARF  180
1qf5a.pdb             113  LDNAREKARGAKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKLKEVMEYHNFQL  172
                           vDglRE ela sfIGTTkRGIGPaYssKV RnGlRVgDLrhmdTf  KLd l edaaarf

1dj2a.pdb             178  Q----GFKYTPEMLREEVEAYKRYADRLEPYITDTVHFINDSISQKKKVLVEGGQATMLD  233
1dj3a.pdb             181  E----GFKYSKGMLKEEVERYKKFAERLEPFIADTVHVLNESIRQKKKILVEGGQATMLD  236
1qf5a.pdb             173  VNYYKAEAV---DYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDFVMFEGAQGTLLD  229
                                gfky   ml eeve yk  AdrLep i Dtvh ln si qkkkvlvEGgQaTmLD

1dj2a.pdb             234  IDFGTYPFVTSSSPSAGGICTGLGIAPSVVGDLIGVVKAYTTRVGSGPFPTENLGTGGDL  293
1dj3a.pdb             237  IDFGTYPFVTSSSPSAGGICTGLGIAPRVIGDLIGVVKAYTTRVGSGPFPTELLGEEGDV  296
1qf5a.pdb             230  IDHGTYPYVTSSNTTAGGVATGSGLGPRYVDYVLGILKAYSTRVGAGPFPTELFDETGEF  289
                           IDfGTYPfVTSSspsAGGicTGlGiaPrvvgdliGvvKAYtTRVGsGPFPTEllge Gd 

1dj2a.pdb             294  LRLAGQEFGTTTGRPRRCGWLDIVALKFSCQINGFASLNLTKLDVLSDLNEIQLGVAYKR  353
1dj3a.pdb             297  LRKAGMEFGTTTGRPRRCGWLDIVALKYCCDINGFSSLNLTKLDVLSGLPEIKLGVSYNQ  356
1qf5a.pdb             290  LCKQGNEFGATTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLDVLDGLKEVKLCVAYRM  349
                           LrkaG EFGtTTGRpRRcGWLDiVAlk  cqiNgfsslnLTKLDVLsgL EikLgVaY  

1dj2a.pdb             354  SDGTPVKSFPGDLRLLEELHVEYEVLPGWKSDISSVRNYSDLPKAAQQYVERIEELVGVP  413
1dj3a.pdb             357  MDGEKLQSFPGDLDTLEQVQVNYEVLPGWDSDISSVRSYSELPQAARRYVERIEELAGVP  416
1qf5a.pdb             350  PDGREVTTTPLAADDWKGVEPIYETMPGWSESTFGVKDRSGLPQAALNYIKRIEELTGVP  409
                            DG  v sfPgdld le v v YEvlPGW sdissVr yS LPqAA  YveRIEEL GVP

1dj2a.pdb             414  IHYIGIGPGRDALIYK------  429
1dj3a.pdb             417  VHYIGVGPGRDALIYK------  432
1qf5a.pdb             410  IDIISTGPDRTETMILRDPFDA  431
                           ihyIg GPgRdaliyk      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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