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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:53:38 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ATP-sulfurylase.html
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#====================================
# Aligned_structures: 2
#   1: 1g8fa.pdb
#   2: 1i2da.pdb
#
# Length:        588
# Identity:      278/588 ( 47.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    278/588 ( 47.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           94/588 ( 16.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1g8fa.pdb               1  -PAPHGGILQDLIARDALKKNELLSEAQSSDILVWNLTPRQLCDIELILNGGFSPLTGFL   59
1i2da.pdb               1  ANAPHGGVLKDLLARDAPRQAELAAEAES--LPAVTLTERQLCDLELIMNGGFSPLEGFM   58
                             APHGG L DL ARDA    EL  EA S       LT RQLCD ELI NGGFSPL GF 

1g8fa.pdb              60  NENDYSSVVTDSRLADGTLWTIPITLDVDEAFANQ--IKPDTRIALFQD-DEIPIAILTV  116
1i2da.pdb              59  NQADYDRVCEDNRLADGNVFSMPITLDASQEVIDEKKLQAGSRITLRDFRDDRNLAILTI  118
                           N  DY  V  D RLADG     PITLD               RI L    D    AILT 

1g8fa.pdb             117  QDVYKPNKTIEAERVFRGDPEHPAISYLFNVAGDYYVGGSLEAIQLPQHYDYPGLRKTPA  176
1i2da.pdb             119  DDIYRPDKTKEAKLVFGGDPEHPAIVYLNNTVKEFYIGGKIEAVNKLNHYDYVALRYTPA  178
                            D Y P KT EA  VF GDPEHPAI YL N     Y GG  EA     HYDY  LR TPA

1g8fa.pdb             177  QLRLEFQSRQWDRVVAFQTRNPMHRAHRELTVRAAREANAKVLIHPVVGLTKPGDIDHHT  236
1i2da.pdb             179  ELRVHFDKLGWSRVVAFQTRNPMHRAHRELTVRAARSRQANVLIHPVVGLTKPGDIDHFT  238
                            LR  F    W RVVAFQTRNPMHRAHRELTVRAAR   A VLIHPVVGLTKPGDIDH T

1g8fa.pdb             237  RVRVYQEIIKRYPNGIAFLSLLPLAMRMSGDREAVWHAIIRKNYGASHFIVGRDHAGPGK  296
1i2da.pdb             239  RVRAYQALLPRYPNGMAVLGLLGLAMRMGGPREAIWHAIIRKNHGATHFIVGRDHAGPGS  298
                           RVR YQ    RYPNG A L LL LAMRM G REA WHAIIRKN GA HFIVGRDHAGPG 

1g8fa.pdb             297  NSKGVDFYGPYDAQELVESYKHELDIEVVPFRMVTYLPDEDRYAPIDQIDTTKTRTLNIS  356
1i2da.pdb             299  NSKGEDFYGPYDAQHAVEKYKDELGIEVVEFQMVTYLPDTDEYRPVDQVPA-GVKTLNIS  357
                           NSKG DFYGPYDAQ  VE YK EL IEVV F MVTYLPD D Y P DQ       TLNIS

1g8fa.pdb             357  GTELRRRLRVGGEIPEWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTV---SREQLSIA  413
1i2da.pdb             358  GTELRRRLRSGAHIPEWFSYPEVVKILRESNPPRATQGFTIFLTGY---MNSGKDAIARA  414
                           GTELRRRLR G  IPEWFSYPEVVKILRESNPPR  QGF I L                A

1g8fa.pdb             414  LLSTFLQFGGGR-YYKIFEHNN--------------------KTELLSLIQDFIGSGSGL  452
1i2da.pdb             415  LQVTLNQQGGRSVSLLLG-D--TVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAAV  471
                           L  T  Q GG                                              G   

1g8fa.pdb             453  IIPDQ--WEDDKDSVVGK-------QNVYLLDTS----------------SS--------  479
1i2da.pdb             472  IAAP-IAPYEESRKFA--RDAVSQAGSFFLVH--VATPLEHCEQSDKRGIY-AAARRGEI  525
                           I                            L                              

1g8fa.pdb             480  ------------A----DIQLESADEPISHIVQKVVLFLEDNGFFVF-  510
1i2da.pdb             526  KGFTGVDDPYETPEKADLVVDF-SKQSVRSIVHEIILVLESQGFLERQ  572
                                                         IV    L LE  GF    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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