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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 00:52:07 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ATP-gua_Ptrans.html
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#====================================
# Aligned_structures: 3
#   1: 1bg0.pdb
#   2: 1crka.pdb
#   3: 2crk.pdb
#
# Length:        398
# Identity:      116/398 ( 29.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    266/398 ( 66.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           65/398 ( 16.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bg0.pdb                1  -VDQ---------ATLDKLEAGFKKLQEASDCKSLLKKHLTKDVFDSIKNKKTGMGATLL   50
1crka.pdb               1  ----TVHEKRKLFPPSADY------P-DLRKHNNCMAECLTPAIYAKLRDKLTPNGYSLD   49
2crk.pdb                1  N------KYKLNYKSEEEY------P-DLSKHNNHMAKVLTPDLYKKLRDKETPSGFTLD   47
                                             y      p dlskhnn mak LTpd y klrdK Tp G tLd

1bg0.pdb               51  DVIQSGVENLD---S-GVGIYAPDAESYRTFGPLFDPIIDDYHGGFKLTDKHPPKQWG--  104
1crka.pdb              50  QCIQTGVDNPGHPFIKTVGMVAGDEESYEVFAEIFDPVIKARHNGYDPRTMKHHT-DLDA  108
2crk.pdb               48  DVIQTGVDNPGHPFIMTVGCVAGDEESYTVFKDLFDPIIQDRHGGFKPTDKHKTD-LNHE  106
                           dvIQtGVdNpg   i tVG vAgDeESY vF  lFDPiI drHgGfkptdkh        

1bg0.pdb              105  DINTLVGLDPAGQFIISTRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSSTLSSMEDELKG  164
1crka.pdb             109  SKITHGQFD--ERYVLSSRVRTGRSIRGLSLPPACSRAERREVENVVVTALAGLKGDLSG  166
2crk.pdb              107  NLKGGDDLD--PHYVLSSRVRTGRSIKGYTLPPHCSRGERRAVEKLSVEALNSLTGEFKG  164
                              t   lD    yvlSsRVRtGRSi Gy lpP csr errevE  vv aL sl gelkG

1bg0.pdb              165  TYYPLTGMSKATQQQLIDDHFLFK-EGDRFLQTANACRYWPTGRGIFHNDAKTFLVWVNE  223
1crka.pdb             167  KYYSLTNMSERDQQQLIDDHFLFDKPVSPLLTCAGMARDWPDARGIWHNNDKTFLVWINE  226
2crk.pdb              165  KYYPLKSMTEQEQQQLIDDHFLFDKPVSPLLLASGMARDWPDARGIWHNDNKSFLVWVNE  224
                           kYYpLt Mse  QQQLIDDHFLFd pvsplL  agmaRdWPdaRGIwHNd KtFLVWvNE

1bg0.pdb              224  EDHLRIISMQKGGDLKTVYKRLVTAVDNIESKL-----PFSHDDRFGFLTFCPTNLGTTM  278
1crka.pdb             227  EDHTRVISMEKGGNMKRVFERFCRGLKEVERLIKERGWEFMWNERLGYVLTCPSNLGTGL  286
2crk.pdb              225  EDHLRVISMEKGGNMKEVFRRFCVGLQKIEEIFKKAGHPFMWNEHLGYVLTCPSNLGTGL  284
                           EDHlRvISMeKGGnmK Vf Rfc gl  iE        pFmwnerlGyvltCPsNLGTgl

1bg0.pdb              279  RASVHIQLPKLAKDRKVLEDIASKFNLQVRGTRGEHTESE--GGVYDISNKRRLGLTEYQ  336
1crka.pdb             287  RAGVHVKLPRLSKD-PRFPKILENLRLQKRGTGGVDTA--AVADVYDISNLDRMGRSEVE  343
2crk.pdb              285  RGGVHVKLAHLSKH-PKFEEILTRLRLQKRGT-----------SVFDISNADRLGSSEVE  332
                           RagVHvkLp LsKd p fe Il  lrLQkRGT            VyDISN dRlG sEve

1bg0.pdb              337  AVREMQDGILEMIKMEKAAA------------------  356
1crka.pdb             344  LVQIVIDGVNYLVDCEKKLEKGQDIKVPPPLP-QFGRK  380
2crk.pdb              333  QVQLVVDGVKLMVEMEKKLEKGQSIDDMIPAQK-----  365
                            Vq v DGv  mv mEKkle                  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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