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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:42:58 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/AP_endonucleas1.html
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#====================================
# Aligned_structures: 2
#   1: 1ako.pdb
#   2: 1bix.pdb
#
# Length:        301
# Identity:       66/301 ( 21.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     66/301 ( 21.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           59/301 ( 19.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ako.pdb                1  ------------------MKFVSFNINGLRARPH--QLEAIVEKHQPDVIGLQETKVHDD   40
1bix.pdb                1  LYEDPPDQKTSPSGKPATLKICSWNVDGLRAWI-KKKGLDWVKEEAPDILCLQETKCS--   57
                                              K  S N  GLRA          V    PD   LQETK    

1ako.pdb               41  MFP----LEEVAKLG-YNVFYHG----QKGHYGVALLTKETPIAVRRGFPGDDEEAQ-RR   90
1bix.pdb               58  ---ENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGD-EEHDQEGR  113
                                    E   L      Y        G  GV LL    P  V  G     E  Q  R

1ako.pdb               91  IIMAEIPSLLGN-VTVINGYFPQGESRDHP-IKFPAKAQFYQNLQNYLETELKRDNPVLI  148
1bix.pdb              114  VIVAEF-----DSFVLVTAYVPNAGR-G--LVRLEYRQRWDEAFRKFLKGLA-SRKPLVL  164
                            I AE              Y P                         L        P   

1ako.pdb              149  MGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDRLMS-WGLVDTFRHANPQTA  207
1bix.pdb              165  CGDLNVAHEEIDLRN-PKGNK-----KNAGFTPQERQGFGELLQAVPLADSFRHLYPNTP  218
                            GD N      D        K         F P ER     L     L D FRH  P T 

1ako.pdb              208  DRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYEIRSMEKPSDHAPVWATFR  267
1bix.pdb              219  YAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL----GSDHCPITLYLA  274
                                  Y       N G R D  L S  L        I          SDH P      

1ako.pdb              268  R  268
1bix.pdb              275  L  275
                            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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