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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:18:04 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/AFOR.html
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#====================================
# Aligned_structures: 2
#   1: 1aora.pdb
#   2: 1b25a.pdb
#
# Length:        632
# Identity:      228/632 ( 36.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    228/632 ( 36.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           48/632 (  7.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1aora.pdb               1  MYGNWGRFIRVNLSTGDIKVEEYDEELAKKWLGSRGLAIYLLLKEMDPTVDPLSPENKLI   60
1b25a.pdb               1  MYGWWGRILRVNLTTGEVKVQEYPEEVAKKFIGGRGLAAWILWN-EARGVEPLSPENKLI   59
                           MYG WGR  RVNL TG  KV EY EE AKK  G RGLA   L       V PLSPENKLI

1aora.pdb              61  IAAGPLTGTSAPTGGRYNVVTKSPLTGFITMANSGGYFGAELKFAGYDAIVVEGKAEKPV  120
1b25a.pdb              60  FAAGPFNGLPTPSGGKLVVAAKSPLTGGYGDGNLGTMASVHLRRAGYDALVVEGKAKKPV  119
                            AAGP  G   P GG   V  KSPLTG     N G      L  AGYDA VVEGKA KPV

1aora.pdb             121  YIYIKDEHIEIRDASHIWGKKVSETEATIRKEVGSEKVKIASIGPAGENLVKFAAIMNDG  180
1b25a.pdb             120  YIYIEDDNVSILSAEGLWGKTTFETERELKEIH-GKNVGVLTIGPAGENLVKYAVVISQE  178
                           YIYI D    I  A   WGK   ETE           V    IGPAGENLVK A      

1aora.pdb             181  HRAAGRGGVGAVMGSKNLKAIAVEGSKTVPIADKQKFMLVVREKVNKLRNDPV-AGGGLP  239
1b25a.pdb             179  GRAAGRPGMGAVMGSKKLKAVVIRGTKEIPVADKEELKKLSQEAYNEILNS--PGYPFWK  236
                            RAAGR G GAVMGSK LKA    G K  P ADK        E  N   N          

1aora.pdb             240  KYGTAVLVNIINENGLYPVKNFQTGVYPYAYEQSGEAMAAKYLVRNKPCYACPIGCGRVN  299
1b25a.pdb             237  RQGTMAAVEWCNTNYALPTRNFSDGYFEFARSIDGYTMEG-MKVQQRGCPYCNMPCGNVV  295
                             GT   V   N N   P  NF  G    A    G  M     V    C  C   CG V 

1aora.pdb             300  RLPTVG-ETEGPEYESVWALGANLGINDLASIIEANHMCDELGLDTISTGGTLATAMELY  358
1b25a.pdb             296  LDAEG-QE-SELDYENVALLGSNLGIGKLNEVSVLNRIADEMGMDTISLGVSIAHVMEAV  353
                                  E     YE V  LG NLGI  L      N   DE G DTIS G   A  ME  

1aora.pdb             359  EKGHIKDEELGDAPPFRWGNTEVLHYYIEKIAKREG-FGDKLAEGSYRLAESYGHPELSM  417
1b25a.pdb             354  ERGILKE-------GPTFGDFKGAKQLALDIAYRKGELGNLAAEGVKAMAEKLGTHDFAM  406
                           E G  K            G           IA R G  G   AEG    AE  G     M

1aora.pdb             418  TVKKLELPAYDPRGAEGHGLGYATNNRGGCHIKNYMISPEILGYPYKMDP-----HDVSD  472
1b25a.pdb             407  HVKGLEVSGYNCYIYPAMALAYGTSAIGAHHKEAWVIAWEIG-TA-----PIEYKISYDP  460
                            VK LE   Y         L Y T   G  H     I  EI                   

1aora.pdb             473  DKIKMLILFQDLT-ALIDSAGLCLFTT--F-GLGADDYRDLLNAALGWDFTTEDYLKIGE  528
1b25a.pdb             461  IKAQKVVELQRLRGGLFEMLTACRLPWVEVGL-SLDYYPKLLKAITGVTYTWDDLYKAAD  519
                            K       Q L   L      C            D Y  LL A  G   T  D  K   

1aora.pdb             529  RIWNAERLFNLKAG-L-DPARDDTLPKRFLEEPMPEGPNKGHTV---RLKEMLPRYYKLR  583
1b25a.pdb             520  RVYSLIRAYWVREFNGKWDRKMDYPPKRWFTEGLKSGPHKGEHLDEKKYDELLSEYYRIR  579
                           R     R               D  PKR   E    GP KG         E L  YY  R

1aora.pdb             584  GWTEDGKIPKEKLEELGIAEFY----------  605
1b25a.pdb             580  GWDERGIPKKETLKELDLDFVIPELEKVTNLE  611
                           GW E G   KE L EL                


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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