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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 12:42:13 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ABC_tran.html
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#====================================
# Aligned_structures: 6
#   1: 1b0ua.pdb
#   2: 1e69a.pdb
#   3: 1f2ua.pdb
#   4: 1f3oa.pdb
#   5: 1g291.pdb
#   6: 1g6ha.pdb
#
# Length:        395
# Identity:       12/395 (  3.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     19/395 (  4.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          235/395 ( 59.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1b0ua.pdb               1  --N-KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINF----   50
1e69a.pdb               1  MRLKKLYLKGFK-------SFG--RPSLIGFSD-RVTAIVGPNGSGKSNIIDAIKWVFGE   50
1f2ua.pdb               1  MKLERVTVKNFR-------SHS---DTVVEFKE-GINLIIGQNGSGKSSLLDAILVGLY-   48
1f3oa.pdb               1  -----IKLKNVTKTYKGEEIIYALKNVNLNIKEGEFVSI-GPSGSGKST-LNIIGC----   49
1g291.pdb               1  -MA-GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG----   51
1g6ha.pdb               1  TME-ILRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITG----   52
                                                                 i G  GsGKs     I      

1b0ua.pdb              51  ------LEKP----------------SEGAIIVN--GQNINL------VRDKD--GQLK-   77
1e69a.pdb              51  ---------KFDMIFAGSENLPPAGSAYVELVFEENGEEITV-AREL-KR-----T---G   91
1f2ua.pdb              49  WPLRIKDIKKDEFTKV------GARDTYIDLIFEKDGTKYRI-TRRFLKG---YSS----   94
1f3oa.pdb              50  ------LDKP----------------TEGEVYID--NIKT--------------------   65
1g291.pdb              52  ------LEEP----------------SRGQIYIG--DKLVA------DPE-----K----   72
1g6ha.pdb              53  ------FLKA----------------DEGRVYFE--NKDITNK-----------------   71
                                                                                       

1b0ua.pdb              78  --V----------------A----DKN-QLRLLRT-R-LTMVFQHFNL---WSHMTVLEN  109
1e69a.pdb              92  ENTYYLN----GSP-----V----RLKDIRDRFAG-TGL---------------------  116
1f2ua.pdb              95  GEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIP-YNIF---------------------  132
1f3oa.pdb              66  -ND----------------L----DDDELTKIRRD-K-IGFVFQQFNL---IPLLTALEN   99
1g291.pdb              73  GIFV---------------------------PPKD-RDIAMVFQSYAL---YPHMTVYDN  101
1g6ha.pdb              72  ----------------------------EPAELYH-YGIVRTFQT---PQPLKEMTVLEN   99
                                                                                       

1b0ua.pdb             110  VMEAP--IQVLG-----------------L----SKHDARERALKYLAKVG--I-DERAQ  143
1e69a.pdb             117  -----GVDFY---SIVGQGQIDRIVN----A----YQRVNESFNRFISLLF---FG-GE-  155
1f2ua.pdb             133  -----L--NA---IYIRQGQIDAILE----SALAREAALSKIGELASEIFAEFTEG-KYS  177
1f3oa.pdb             100  VELPL--IFKYRG----------------A----SGEERRKRALECLK-AE--L-EERFA  133
1g291.pdb             102  IAFPL--KLRK------------------V----PRQEIDQRVREVAELLG----LTELL  133
1g6ha.pdb             100  LLIGE--ICP---G-ESPLNSLFYKKWIPK-----EEEMVEKAFKILEFLK----LSHLY  144
                                                                                       

1b0ua.pdb             144  ----------------------GKYPVHLSGGQQQRVSIARA----LAM--EPDVLLFDE  175
1e69a.pdb             156  --GRL------EISIRKPGR-RDQKLSLLSGGEKALVGLALLFALMEIK--PSPFYVLDE  204
1f2ua.pdb             178  EVVVRAEENKVRLFVVW--EGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDE  235
1f3oa.pdb             134  ----------------------NHKPNQLSGGQQQRVAIARA----LAN--NPPIILADE  165
1g291.pdb             134  ----------------------NRKPRELSGGQRQRVALGRA----IVR--KPQVFLMDE  165
1g6ha.pdb             145  ----------------------DRKAGELSGGQMKLVEIGRA----LMT--NPKMIVMDE  176
                                                       LSGG    v                     DE

1b0ua.pdb             176  PTSALDPELVGEVLRIMQQLAE-EG--KTMVVVTHEM-GFARHVSSHVIFLHQ----GKI  227
1e69a.pdb             205  VDSPLDDYNAERFKRLLKENSK--H--TQFIVITHNK-IV-MEAADLLHGVTMVNGVSAI  258
1f2ua.pdb             236  PTPYLDEERRRKLITIMERYLK--K-IPQVILVSHDE-EL-KDAADHVIRISLENGSSKV  290
1f3oa.pdb             166  PTGALDSKTGEKI-QLLKKLNEEDG--KTVVVVTHDI-NVAR-FGERIIYLKD----GEV  216
1g291.pdb             166  PLSNLDAKLRVRMRAELKKLQR-QLG-VTTIYVTHDQ-VEAMTMGDRIAVMNR----GVL  218
1g6ha.pdb             177  PIAGVAPGLAHDIFNHVLELKA-KG--ITFLIIEHRLDIV-LNYIDHLYVMFN----GQI  228
                           p   ld                            H                         

1b0ua.pdb             228  EEEGD--PEQVFGNP-QSPRLQQFLKGSLKKLE--  257
1e69a.pdb             259  VPVEV------------------------------  263
1f2ua.pdb             291  EVVS-------------------------------  294
1f3oa.pdb             217  EREEKLRG-------------------------F-  225
1g291.pdb             219  QQVGS--PDEVYDKP-ANTFVAGFI----------  240
1g6ha.pdb             229  IAEGRG-EEEIKN-VLSDPKVVEIYIG-------E  254
                                                              


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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