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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:14:30 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/6PGD.html
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#====================================
# Aligned_structures: 2
#   1: 1pgjb.pdb
#   2: 2pgd.pdb
#
# Length:        487
# Identity:      152/487 ( 31.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    152/487 ( 31.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           23/487 (  4.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1pgjb.pdb               1  -SMDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANA-SAPFAGNLKAFET   58
2pgd.pdb                1  AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKG----TKVLGAHS   56
                              D    GL VMG NL LN    GF V  FNRT SK   F    A              

1pgjb.pdb              59  MEAFAASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLE  118
2pgd.pdb               57  LEEMVSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLK  116
                            E     LKKPR    LV AG A D  IE L      GDI  D GN    D  RR   L 

1pgjb.pdb             119  AAGLRFLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSG  178
2pgd.pdb              117  DKGILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDD  176
                             G  F G G SGGE GAR GP   PGG    W  I  I    AAK   G PC    G  

1pgjb.pdb             179  GAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLEDWKSKNFLKSYMLDISI  238
2pgd.pdb              177  GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITA  236
                           GAG  VKM HN  EY   Q   E                A       K  L S    I  

1pgjb.pdb             239  AAARAKDKDGSYLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKTER  298
2pgd.pdb              237  SILKFQDADGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDER  296
                                 D DG  L     D  G KGTG W A  ALE GVP      AV  R     K ER

1pgjb.pdb             299  QANASNAPGITQSPGYTLKNKSPSGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVHNFG  358
2pgd.pdb              297  IQASKKLKG--PQNIPFEGDK---KSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWT  351
                                   G           K                  I  YAQ F  LR         

1pgjb.pdb             359  LNLPATIATFRAGCILQGYLLKPMTEAFEKNPNISNLMCA--FQTEIRAGLQNYRDMVAL  416
2pgd.pdb              352  LNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAIST  411
                           LN        R GCI     L     AF  NP   NL     F           R     

1pgjb.pdb             417  ITSKLEVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDG-RESFQWP  475
2pgd.pdb              412  GV-QAGIPMPCFTTALSFYDGYRHAML-PANLIQAQRDYFGAHTYELLAKPGQFIHTNWT  469
                                    P     L          L    L   QRD FG H YE   K G      W 

1pgjb.pdb             476  ELQ----  478
2pgd.pdb              470  ---GHGG  473
                                  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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