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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:07:52 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/6PF2K.html
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#====================================
# Aligned_structures: 2
#   1: 1bif.pdb
#   2: 1k6ma.pdb
#
# Length:        214
# Identity:      151/214 ( 70.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    151/214 ( 70.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            2/214 (  0.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bif.pdb                1  -CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDN   59
1k6ma.pdb               1  NSPTMVIMVGLPARGKTYISTKLTRYLNFIGTPTKVFNLGQYRREAV-SYKNYEFFLPDN   59
                             PT   MVGLPARGKTYIS KLTRYLNFIG PT  FN GQYRR  V  YK  EFFLPDN

1bif.pdb               60  EEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVE  119
1k6ma.pdb              60  MEALQIRKQCALAALKDVHNYLSHEEGHVAVFDATNTTRERRSLILQFAKEHGYKVFFIE  119
                            E L IRKQCALAAL DV   LS E GHVAVFDATNTTRERR  I  F    GYK FF E

1bif.pdb              120  SICVDPEVIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLDEEQDRDLSYI  179
1k6ma.pdb             120  SICNDPGIIAENIRQVKLGSPDYIDCDREKVLEDFLKRIECYEVNYQPLDEELDSHLSYI  179
                           SIC DP  IA NI QVKLGSPDY   D     EDF  RIECYE  Y  LDEE D  LSYI

1bif.pdb              180  KIMDVGQSYVVNRVADHIQSRIVYYLMNIHVTPR  213
1k6ma.pdb             180  KIFDVGTRYMVNRVQDHIQSRTVYYLMNIHVTPR  213
                           KI DVG  Y VNRV DHIQSR VYYLMNIHVTPR


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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