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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:14:03 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/5_3_exonuclease.html
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#====================================
# Aligned_structures: 2
#   1: 1bgxt.pdb
#   2: 1xo1a.pdb
#
# Length:        318
# Identity:       37/318 ( 11.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     37/318 ( 11.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          106/318 ( 33.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bgxt.pdb               1  MRGMLPLFEPKG-RVLLVDGHHLAYRTFHALKGLTTSRGEPVQAVYGFAKSLLKALKED-   58
1xo1a.pdb               1  -----------RRNLMIVDGTNLGFRF---------------PFASSYVSTIQSLAKSYS   34
                                            VDG  L  R                              K   

1bgxt.pdb              59  GDAVIVVFDAKAPSFRHEAYGGYKAGRAPTPED----FPRQLALIKELVDLLGLARLEVP  114
1xo1a.pdb              35  ARTTIVLGDK-GK----SVFRLEHL--------PEYAFFEYLKDAFELCKT-TFPTFTIR   80
                               IV  D                            F   L    EL            

1bgxt.pdb             115  GYEADDVLASLAKKAEKEGYEVRILTADKD-LYQLLSDRIHVLHPEG-YLITPAWLWEKY  172
1xo1a.pdb              81  GVEADDMAAYIVKLIGHLYDHVWLIS-TDGDWDTLLTDKVSRFSFTTRREYHLRDMYEHH  139
                           G EADD  A   K        V            LL D                   E  

1bgxt.pdb             173  G-LRPDQWADYRALTGD-ESDNLPGVKGIGEKTARKLLEEWG-SLEALLK-----NLD--  222
1xo1a.pdb             140  NVDDVEQFISLKAIMG-DLGDNIRGVEG---I-GAKRGYNIIREFGN---VLDIIDQLPL  191
                                 Q     A  G    DN  GV G       K                        

1bgxt.pdb             223  R-LKPAIREKILAHMDDLKLSWDLAKVRTDLPLEVDFAKRREP-------------DRER  268
1xo1a.pdb             192  PGKQKY-IQNLNASEELLFRNLILVDLP---------------TYCVDAIAAVGQDVLDK  235
                                       A    L     L                                    

1bgxt.pdb             269  LRAFLERLEFGSLLHEF-  285
1xo1a.pdb             236  FTKDILEIA--------E  245
                                             


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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