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# Program: MUSTANG v0.2: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, P. J. Stuckey, J. C. Whisstock, and A. M. Lesk
# Rundate: Thu Oct  6 15:35:58 2005
# Report_file: results.html
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#====================================
# Aligned_structures: 3
#   1: 1JFJA.pdb
#   2: 1NCX.pdb
#   3: 2SAS.pdb
#
# Length:        208
# Identity:       11/208 (  5.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     55/208 ( 26.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           81/208 ( 38.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1JFJA.pdb               1  ----------------MAEALFKE-----IDVNGDGAV---SYEEVKAFVSKKRAI----   32
1NCX.pdb                1  ASMTDQQAEARAFLSEEMIAEFKAAFD-MFDADGGGDI---STKELGTVMRMLGQN----   52
2SAS.pdb                1  ------------GLNDFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSD   48
                                              a fK       D ngdG i   s ee  t            

1JFJA.pdb              33  ----KNEQLL----QLIFKSIDADGNGEIDQNEFAKFYGSIQGQD-------------LS   71
1NCX.pdb               53  ----PTKEEL----DAIIEEVDEDGSGTIDFEEFLVMMV------RQMKED------AKG   92
2SAS.pdb               49  ADYKSMQASLEDEWRDLKGRADINKDDVVSWEEYLAMWE------KTIATCKSVADL-PA  101
                                    L      i    D dg g id eEfl m                       

1JFJA.pdb              72  DDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHG---IE-KVAEQVMKADANGDGYITLE  127
1NCX.pdb               93  KSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFD  152
2SAS.pdb              102  WCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQLQCAD--VPAVYNVITDGGKVTFDLN  159
                                l  lfk mDv gDG  d EE     k  g    e  v       d ngdg idl 

1JFJA.pdb             128  EFLEFSL---------------------  134
1NCX.pdb              153  EFLKMMEG------------------VQ  162
2SAS.pdb              160  RYKELYYRLLTSPAADAGNTLMGQKP--  185
                           efle                        


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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