# MMLSUM Exp_Change = 0.5 log odds matrix (in 1/4-bit units) # Default Gap-open = 24.3357 # Default Gap-extn = 3.6375 # Notes: Matrix derived from MMLSUM (t = 74) Markov Matrix # File generated on: 2020/10/02 12:50:15 A R N D C Q E G H I L K M F P S T W Y V A 10.1607 -4.3013 -5.2986 -6.6526 -2.1549 -2.5179 -2.8613 -1.8535 -5.6908 -4.8372 -4.1078 -3.4976 -3.0451 -6.4856 -3.2652 0.3367 -2.5593 -8.0449 -6.3292 -1.4764 R -4.3013 13.4493 -2.5816 -4.6887 -7.9424 0.8231 -1.4236 -7.2973 -0.5754 -7.9586 -6.1643 3.9988 -4.6709 -9.1212 -5.9760 -3.3010 -3.8912 -5.9079 -4.2025 -8.4411 N -5.2986 -2.5816 13.8186 2.4348 -7.8696 -0.9883 -2.4474 -2.1344 -0.5750 -9.6877 -10.8022 -0.7684 -6.9359 -9.4036 -4.6829 0.4050 -1.7582 -10.0444 -4.0240 -9.5769 D -6.6526 -4.6887 2.4348 13.3113 -12.3564 -1.9722 2.4952 -3.6837 -3.9948 -14.4491 -13.1956 -2.1966 -10.8741 -12.9463 -4.5714 -1.4898 -3.4529 -11.8935 -9.2401 -13.5974 C -2.1549 -7.9424 -7.8696 -12.3564 21.3081 -9.9120 -13.0844 -9.5985 -6.7102 -4.7748 -3.7273 -11.5933 -3.6565 -3.6129 -10.8769 -2.6468 -4.7167 -6.0807 -4.6895 -2.8675 Q -2.5179 0.8231 -0.9883 -1.9722 -9.9120 13.5328 2.7160 -7.1783 0.4441 -8.7944 -6.2209 1.5084 -2.1503 -8.9631 -4.1655 -1.7401 -2.1230 -8.1485 -4.6441 -7.1125 E -2.8613 -1.4236 -2.4474 2.4952 -13.0844 2.7160 11.9867 -7.3556 -3.5654 -10.5203 -9.6499 0.6774 -6.9806 -11.8881 -3.9502 -2.4945 -2.8964 -11.4042 -7.7434 -8.0964 G -1.8535 -7.2973 -2.1344 -3.6837 -9.5985 -7.1783 -7.3556 12.8062 -6.4858 -12.8979 -11.7600 -6.6444 -9.1613 -9.7285 -5.4519 -2.0218 -5.9500 -11.0975 -10.1216 -11.3693 H -5.6908 -0.5754 -0.5750 -3.9948 -6.7102 0.4441 -3.5654 -6.4858 17.6008 -9.1723 -6.9391 -2.4213 -6.0203 -4.4185 -6.6574 -3.6381 -4.7513 -3.9434 1.2926 -8.3895 I -4.8372 -7.9586 -9.6877 -14.4491 -4.7748 -8.7944 -10.5203 -12.8979 -9.1723 11.4387 2.5609 -8.0715 1.5295 -1.0152 -8.4676 -8.1367 -4.4731 -6.4496 -6.1598 4.6968 L -4.1078 -6.1643 -10.8022 -13.1956 -3.7273 -6.2209 -9.6499 -11.7600 -6.9391 2.5609 10.2115 -8.2669 3.2558 0.8401 -9.0858 -8.8986 -5.9492 -4.3692 -4.5699 0.2821 K -3.4976 3.9988 -0.7684 -2.1966 -11.5933 1.5084 0.6774 -6.6444 -2.4213 -8.0715 -8.2669 12.0720 -5.1403 -11.2553 -3.6376 -2.3862 -2.3138 -10.6901 -7.1525 -8.8771 M -3.0451 -4.6709 -6.9359 -10.8741 -3.6565 -2.1503 -6.9806 -9.1613 -6.0203 1.5295 3.2558 -5.1403 16.3914 -0.5215 -9.4898 -4.8464 -3.6320 -3.1579 -2.6310 -1.4221 F -6.4856 -9.1212 -9.4036 -12.9463 -3.6129 -8.9631 -11.8881 -9.7285 -4.4185 -1.0152 0.8401 -11.2553 -0.5215 14.4414 -8.4110 -7.6990 -6.4195 1.3372 4.3977 -2.5567 P -3.2652 -5.9760 -4.6829 -4.5714 -10.8769 -4.1655 -3.9502 -5.4519 -6.6574 -8.4676 -9.0858 -3.6376 -9.4898 -8.4110 15.7953 -2.6730 -4.3715 -10.5179 -8.0469 -6.4306 S 0.3367 -3.3010 0.4050 -1.4898 -2.6468 -1.7401 -2.4945 -2.0218 -3.6381 -8.1367 -8.8986 -2.3862 -4.8464 -7.6990 -2.6730 10.8865 2.5082 -8.5369 -6.0060 -6.5709 T -2.5593 -3.8912 -1.7582 -3.4529 -4.7167 -2.1230 -2.8964 -5.9500 -4.7513 -4.4731 -5.9492 -2.3138 -3.6320 -6.4195 -4.3715 2.5082 11.6734 -7.3629 -5.2215 -1.9097 W -8.0449 -5.9079 -10.0444 -11.8935 -6.0807 -8.1485 -11.4042 -11.0975 -3.9434 -6.4496 -4.3692 -10.6901 -3.1579 1.3372 -10.5179 -8.5369 -7.3629 21.3393 2.5952 -8.1117 Y -6.3292 -4.2025 -4.0240 -9.2401 -4.6895 -4.6441 -7.7434 -10.1216 1.2926 -6.1598 -4.5699 -7.1525 -2.6310 4.3977 -8.0469 -6.0060 -5.2215 2.5952 15.3838 -5.2423 V -1.4764 -8.4411 -9.5769 -13.5974 -2.8675 -7.1125 -8.0964 -11.3693 -8.3895 4.6968 0.2821 -8.8771 -1.4221 -2.5567 -6.4306 -6.5709 -1.9097 -8.1117 -5.2423 10.4666