################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:01:57 2021 # Report_file: c_0743_11.html ################################################################################################ #==================================== # Aligned_structures: 13 # 1: usage_00027.pdb # 2: usage_00028.pdb # 3: usage_00029.pdb # 4: usage_00030.pdb # 5: usage_00031.pdb # 6: usage_00032.pdb # 7: usage_00072.pdb # 8: usage_00123.pdb # 9: usage_00124.pdb # 10: usage_00125.pdb # 11: usage_00126.pdb # 12: usage_00127.pdb # 13: usage_00128.pdb # # Length: 97 # Identity: 21/ 97 ( 21.6%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 66/ 97 ( 68.0%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 20/ 97 ( 20.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00027.pdb 1 YIDYDVSDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAG 60 usage_00028.pdb 1 YIDYDVSDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAG 60 usage_00029.pdb 1 YIDYDVSDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAG 60 usage_00030.pdb 1 YIDYDVSDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAG 60 usage_00031.pdb 1 YIDYDVSDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAG 60 usage_00032.pdb 1 YIDYDVSDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAG 60 usage_00072.pdb 1 PTSARQLDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSG 60 usage_00123.pdb 1 YIDYGVADSIATITLNRPEAANAQNPELLDELDAAWTRAAEDNEVKVIILRANGKHFSAG 60 usage_00124.pdb 1 YIDYGVADSIATITLNRPEAANAQNPELLDELDAAWTRAAEDNEVKVIILRANGKHFSAG 60 usage_00125.pdb 1 -IDYGVADSIATITLNRPEAANAQNPELLDELDAAWTRAAEDNEVKVIILRANGKHFSAG 59 usage_00126.pdb 1 YIDYGVADSIATITLNRPEAANAQNPELLDELDAAWTRAAEDNEVKVIILRANGKHFSAG 60 usage_00127.pdb 1 YIDYGVADSIATITLNRPEAANAQNPELLDELDAAWTRAAEDNEVKVIILRANGKHFSAG 60 usage_00128.pdb 1 YIDYGVADSIATITLNRPEAANAQNPELLDELDAAWTRAAEDNEVKVIILRANGKHFSAG 60 idy v D IatItLnrPeaaNaqnpelLdeLdaawtraAedN v VI lrAnGkhFSaG usage_00027.pdb 61 HDL-R-----LTLEFIY---AHESRRYLEYSLRWRNV 88 usage_00028.pdb 61 HDL-R-----LTLEFIY---AHESRRYL--------- 79 usage_00029.pdb 61 HDL-RGPD-KLTLEFIY---AHESRRYLEYSLRWRNV 92 usage_00030.pdb 61 HDL-RGPD-KLTLEFIY---AHESRRYLEYSLRWRNV 92 usage_00031.pdb 61 HDL-RGPD-KLTLEFIY---AHESRRYL--------- 83 usage_00032.pdb 61 HDL-RGPD-KLTLEFIY---AHESRRYLEYSLRWRN- 91 usage_00072.pdb 61 HDL-K---E-LTEEQGRDYHAEVFQTCSKVMMHIRN- 91 usage_00123.pdb 61 HDL-R----KISLEFII---QHEARRYLDYTLRWRN- 88 usage_00124.pdb 61 HDLK------ISLEFII---QHEARRYL--------- 79 usage_00125.pdb 60 HDL-R-PE-KISLEFII---QHEARRYLDYTLRWRN- 89 usage_00126.pdb 61 HDL---PE-KISLEFII---QHEARRYL--------- 81 usage_00127.pdb 61 HDL---PE-KISLEFII---QHEARRYL--------- 81 usage_00128.pdb 61 HDL-R-PE-KISLEFII---QHEARRYLDYTLRWRN- 90 HDL lEfi he rryl #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################