################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:30:58 2021 # Report_file: c_0142_4.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00003.pdb # 2: usage_00004.pdb # 3: usage_00006.pdb # 4: usage_00008.pdb # 5: usage_00024.pdb # 6: usage_00027.pdb # 7: usage_00029.pdb # 8: usage_00038.pdb # 9: usage_00040.pdb # 10: usage_00041.pdb # 11: usage_00042.pdb # # Length: 187 # Identity: 21/187 ( 11.2%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 29/187 ( 15.5%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 59/187 ( 31.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00003.pdb 1 -EDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV- 58 usage_00004.pdb 1 -EDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV- 58 usage_00006.pdb 1 -PFIIEAIKTLRFYKPTEIQERIIPGALRGES-VGQSQTGTGKTHAYLLPI-EKIKPER- 56 usage_00008.pdb 1 KPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT- 59 usage_00024.pdb 1 SESLLRGIYA----KPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL- 55 usage_00027.pdb 1 -DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL-ET- 57 usage_00029.pdb 1 -EDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV- 58 usage_00038.pdb 1 SESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL- 59 usage_00040.pdb 1 REDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQV- 59 usage_00041.pdb 1 REDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQV- 59 usage_00042.pdb 1 -AAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCL-EQE 58 P iQ I G d G GKT f usage_00003.pdb 59 --------R-ETQALILAPTRELAVQIQKGLLALGD--Y----MN---VQCHACIGGTNV 100 usage_00004.pdb 59 --------R-ETQALILAPTRELAVQIQKGLLALGD--Y----MN---VQCHACIGGTNV 100 usage_00006.pdb 57 --------A-EVQAVITAPTRELATQIYHETLKITK--F----CPKDRIVARCLIGG-TD 100 usage_00008.pdb 60 --------G-QVSVLVMCHTRELAFQISKEYERFSK--Y----MP--NVKVAVFFGGLSI 102 usage_00024.pdb 56 -----------TQALVLAPTRELAQQIQKVVMAL-G--------------CHACIGGTNV 89 usage_00027.pdb 58 --------PQRLFALVLTPTRELAFQISEQFEALGS--S----IG---VQSAVIVGGIDS 100 usage_00029.pdb 59 --------R-ETQALILAPTRELAVQIQKGLLALGD--Y----MN---VQCHACIGGTNV 100 usage_00038.pdb 60 --------K-ATQALVLAPTRELAQQIQKVVMALGD--Y----MG---ASCHACIGGTNV 101 usage_00040.pdb 60 --------R-ETQALILAPTRELAVQVQKGLLALGD--Y----MN---VQCHACIGGTNV 101 usage_00041.pdb 60 --------R-ETQALILAPTRELAVQVQKGLLALGD--Y----MN---VQSHACI----- 96 usage_00042.pdb 59 KRLPFSKRE-GPYGLIICPSRELARQTHGILEYYCRLLQEDSSPL---LRCALCIGGMSV 114 l ptRELA Q usage_00003.pdb 101 GEDIR-KL-DY-GQHVVAGTPGRVFDMIRRR-SLRTRAIKMLVLDEADEMLNKGFKEQIY 156 usage_00004.pdb 101 GEDIR-KL-DY-GQHVVAGTPGRVFDMIRRR-SLRTRAIKMLVLDEADEMLNKGFKEQIY 156 usage_00006.pdb 101 KQKAL-EKLNV-QPHIVIGTPGRINDFIREQ-ALDVHTAHILVVDEADLLDG-------- 149 usage_00008.pdb 103 KKDEE-VL-KKNCPHIVVGTPGRILALARNK-SLNLKHIKHFILDECDKMLEQ------- 152 usage_00024.pdb 90 RAEVQ-KL-QMEAPHIIVGTPGRVFDMLNRR-YLSPKYIKMFVLDEADEMLSR------- 139 usage_00027.pdb 101 MSQSL-AL-AK-KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNM------- 150 usage_00029.pdb 101 GEDIR-KL-DY-GQHVVAGTPGRVFDMIRRR-SLRTRAIKMLVLDEADEMLNK------- 149 usage_00038.pdb 102 RAEVQKLQ-ME-APHIIVGTPGRVFDMLNRR-YLSPKYIKMFVLDEADEMLSR------- 151 usage_00040.pdb 102 GEDIR-KL-DY-GQHVVAGTPGRVFDMIRRR-SLRTRAIKMLVLDEADEMLNK------- 150 usage_00041.pdb 97 GEDIR-KL-DY-GQHVVAGTPGRVFDMIRRR-SLRTRAIKMLVLDEADEMLNK------- 145 usage_00042.pdb 115 KEQME-TI-RH-GVHMMVATPGRLMDLLQKK-MVSLDICRYLALDEADRMIDM------- 163 H TPGR d DEaD usage_00003.pdb 157 DVYRYL- 162 usage_00004.pdb 157 DVYRYL- 162 usage_00006.pdb ------- usage_00008.pdb 153 ------L 153 usage_00024.pdb 140 ------G 140 usage_00027.pdb ------- usage_00029.pdb 150 ------G 150 usage_00038.pdb 152 ------G 152 usage_00040.pdb 151 ------G 151 usage_00041.pdb 146 ------G 146 usage_00042.pdb 164 ------G 164 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################