################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 02:13:03 2021 # Report_file: c_0145_12.html ################################################################################################ #==================================== # Aligned_structures: 19 # 1: usage_00012.pdb # 2: usage_00016.pdb # 3: usage_00055.pdb # 4: usage_00085.pdb # 5: usage_00104.pdb # 6: usage_00105.pdb # 7: usage_00163.pdb # 8: usage_00205.pdb # 9: usage_00277.pdb # 10: usage_00370.pdb # 11: usage_00371.pdb # 12: usage_00457.pdb # 13: usage_00498.pdb # 14: usage_00518.pdb # 15: usage_00539.pdb # 16: usage_00540.pdb # 17: usage_00549.pdb # 18: usage_00575.pdb # 19: usage_00577.pdb # # Length: 127 # Identity: 15/127 ( 11.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 21/127 ( 16.5%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 34/127 ( 26.8%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00012.pdb 1 --LVLTQSSSASFSLGASAKLTCT-LS------SQHSTYTIEWYQQQPLKPPKYVMELKK 51 usage_00016.pdb 1 --SVLTQPPSVSVAPGQTARITCG-GN------N-IGSKSVHWYQQKPGQAPVLVVYD-- 48 usage_00055.pdb 1 -IVLTQSPGTLSVSPGERATLFCK-AS------Q-G-GNSLSWYQKRRGQPPRLLIYD-- 48 usage_00085.pdb 1 DIELTQSPDSLAVSLGQRATISCR-ASEDSYG-----NSFMQWYQQKPGQPPKLLIYR-- 52 usage_00104.pdb 1 --YVLTQPPSVSVSPGQTARITCS-GD------K-LGDKYASWYQQKPGQSPVLVIYQ-- 48 usage_00105.pdb 1 --YVLTQPPSVSVSPGQTARITCS-GD------K-LGDKYASWYQQKPGQSPVLVIYQ-- 48 usage_00163.pdb 1 --LVLTQSSSASFSLGASAKLTCT-LS------SQHSTYTIEWYQQQPLKPPKYVMELKK 51 usage_00205.pdb 1 --YVLTQPPSVSVAPGETARISCG-GN------N-IGTKVLHWYQQTPGQAPVLVVYD-- 48 usage_00277.pdb 1 --LMTQIPASMSISVGDRVTMNCKASQ------N-V-DSNVDWYQQKTGQSPNLLIYK-- 48 usage_00370.pdb 1 --IELTQPPSVSVAPGQTARISCS-GD------S-LGSKYVIWYQQKPGQAPVLVIYD-- 48 usage_00371.pdb 1 --IELTQPPSVSVAPGQTARISCS-GD------S-LGSKYVIWYQQKPGQAPVLVIYD-- 48 usage_00457.pdb 1 --YDLTQARSVSVSPGQTARVTCG-GD------N-IGSKSVQWYQQKPPQAPVLVMSA-- 48 usage_00498.pdb 1 --HVTQSPSSLSVSIGDRVTINCQ-TS-----QG-V-GSDLHWYQHKPGRAPKLLIHH-- 48 usage_00518.pdb 1 --YELTQPPSVSVSPGQTASITCS-GD------K-LGNKFTSWYQRKPGQSPVLVIYQ-- 48 usage_00539.pdb 1 --YVLTQPPSVSVAPGETARISCG-GN------N-IGTKVLHWYQQTPGQAPVLVVYD-- 48 usage_00540.pdb 1 --YVLTQPPSVSVAPGETARISCG-GN------N-IGTKVLHWYQQTPGQAPVLVVYD-- 48 usage_00549.pdb 1 --YEVTQPPSLSVSPGQTARITCS-GE------K-LGDAYVCWYQQRPGQSPVVVIYQ-- 48 usage_00575.pdb 1 --YVLTQPPSVSVAPGQTARITCG-GN------N-IGSKSVHWYQQKPGQAPVLVVYD-- 48 usage_00577.pdb 1 --YVLTQPPSVSVAPGQTARITCG-GN------N-IGSKSVHWYQQKPGQAPVLVVYD-- 48 s s G C WYQ P usage_00012.pdb 52 DGSHSTGDGI-PDRFSGSSSGADRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFG-GGT 109 usage_00016.pdb 49 --DSDRPSGI-PERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSS--SDHVVFG-GGT 102 usage_00055.pdb 49 --TSRRASGI-PDRFVGSGSGTDFSLTITKVDRDDFALYFCQQF--------EFFG-LGT 96 usage_00085.pdb 53 --ASNLESGI-PARFSGTGSRTDFTLTINPVEADDVATYYCQQSDEY--PYMYTFG-GGT 106 usage_00104.pdb 49 --DNKRPSEI-PARFSGSNSGNTATLTISGAQAMDEADYYCQAWDSN--TGVFGTG---T 100 usage_00105.pdb 49 --DNKRPSEI-PARFSGSNSGNTATLTISGAQAMDEADYYCQAWDSN--TGVFGTG---T 100 usage_00163.pdb 52 DGSHSTGDGI-PDRFSGSSSGADRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFG-GGT 109 usage_00205.pdb 49 --DSDRPSGI-PERFSGSNSGNTATLTISRVEVGDEADYYCQVWDIS--TDQAVFG-GGT 102 usage_00277.pdb 49 --ASNRN-TGVPDRFTGSGSGTDFTFTISNMQAEDLAVYYCMQSTS----YPLTFG-SGT 100 usage_00370.pdb 49 --DSNRPSGI-PERFSGSNSGNTATLTISGTQAEDEADYYCSTFTMS--GNGTVFG-GGT 102 usage_00371.pdb 49 --DSNRPSGI-PERFSGSNSGNTATLTISGTQAEDEADYYCSTFTMS--GNGTVFG-GGT 102 usage_00457.pdb 49 --DDERSSGI-PERFSGSNSGNTATLTISGVEAGDEADYYCQVWDSS--SHHMLFG-GGT 102 usage_00498.pdb 49 --TSSVEDGV-PSRFSGSGFHTSFNLTISDLQADDIATYYCQVL--------QFFG-RGS 96 usage_00518.pdb 49 --DTKRPSGI-PERFSGSTSGNTATLTISGTQAMDEADYYCQAWDSS--TAWVFGG--GT 101 usage_00539.pdb 49 --DSDRPSGI-PERFSGSNSGNTATLTISRVEVGDEADYYCQVWDIS--TDQAVFG-GGT 102 usage_00540.pdb 49 --DSDRPSGI-PERFSGSNSGNTATLTISRVEVGDEADYYCQVWDIS--TDQAVFG-GGT 102 usage_00549.pdb 49 --DNRRPSGI-PERFSGSSSGNTATLTISGTQTLDEADYYCQVWDSN--ASVVFGG--GT 101 usage_00575.pdb 49 --DSDRPSGI-PERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSS--SDHPWVFGGGT 103 usage_00577.pdb 49 --DSDRPSGI-PERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSS--SDHPWVFGGGT 103 P RF Gs s l I D A Y C t usage_00012.pdb 110 KVTV--- 113 usage_00016.pdb 103 KLTV--- 106 usage_00055.pdb 97 ALEI--- 100 usage_00085.pdb 107 KLEI--- 110 usage_00104.pdb 101 KLTVLRT 107 usage_00105.pdb 101 KLTVLRT 107 usage_00163.pdb 110 KVTV--- 113 usage_00205.pdb 103 KLTV--- 106 usage_00277.pdb 101 KLEI--- 104 usage_00370.pdb 103 KLTV--- 106 usage_00371.pdb 103 KLTV--- 106 usage_00457.pdb 103 RLTV--- 106 usage_00498.pdb 97 RLHI--- 100 usage_00518.pdb 102 KLEV--- 105 usage_00539.pdb 103 KLTV--- 106 usage_00540.pdb 103 KLTV--- 106 usage_00549.pdb 102 KLT---- 104 usage_00575.pdb 104 KLTV--- 107 usage_00577.pdb 104 KLTV--- 107 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################