################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:38:15 2021 # Report_file: c_1376_1.html ################################################################################################ #==================================== # Aligned_structures: 7 # 1: usage_00413.pdb # 2: usage_00414.pdb # 3: usage_00557.pdb # 4: usage_00898.pdb # 5: usage_00906.pdb # 6: usage_01029.pdb # 7: usage_01030.pdb # # Length: 87 # Identity: 17/ 87 ( 19.5%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 21/ 87 ( 24.1%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 44/ 87 ( 50.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00413.pdb 1 DDLEKAKTHLVVLWASQANTIPATFWSLFQMIRNPEAMKAATEEVKRTLENAGQKVSLEG 60 usage_00414.pdb 1 DDLEKAKTHLVVLWASQANTIPATFWSLFQMIRNPEAMKAATEEVKRTLENAGQKVSL-- 58 usage_00557.pdb 1 -------------------MGPAAFWLLLFLLKNPEALAAVRGELESILW---------- 31 usage_00898.pdb 1 -------------------MGPAAFWLLLFLLKNPEALAAVRGELESILWQ--------- 32 usage_00906.pdb 1 DAEMQRRAMLLQLWVTQGNAGPAAFWVMGYLLTHPEALRAVREEI-Q------------- 46 usage_01029.pdb 1 DDLEKAKTHLVVLWASQANTIPATFWSLFQMIRNPEAMKAATEEVKRTLENAGQKVSLEG 60 usage_01030.pdb 1 DDLEKAKTHLVVLWASQANTIPATFWSLFQMIRNPEAMKAATEEVKRTLENAGQKVSLEG 60 PA FW l nPEA A E usage_00413.pdb 61 NPICLSQAELNDLPVLDSIIKESLRLS 87 usage_00414.pdb 59 -PICLSQAELNDLPVLDSIIKESLRLS 84 usage_00557.pdb 32 -----PQKVLDSTPVLDSVLSESLRLT 53 usage_00898.pdb 33 ---TLPQKVLDSTPVLDSVLSESLRLT 56 usage_00906.pdb 47 -----------NTPVFDSVLWETLRLT 62 usage_01029.pdb 61 NPICLSQAELNDLPVLDSIIKESLRLS 87 usage_01030.pdb 61 NPICLSQAELNDLPVLDSIIKESLRLS 87 PVlDS EsLRL #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################