################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:47:30 2021 # Report_file: c_0215_9.html ################################################################################################ #==================================== # Aligned_structures: 8 # 1: usage_00002.pdb # 2: usage_00016.pdb # 3: usage_00027.pdb # 4: usage_00028.pdb # 5: usage_00048.pdb # 6: usage_00049.pdb # 7: usage_00078.pdb # 8: usage_00084.pdb # # Length: 147 # Identity: 29/147 ( 19.7%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 51/147 ( 34.7%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 14/147 ( 9.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00002.pdb 1 DSLYYGDLILQMLSESVLPEWTIREFKICGEEQLDAHRLIRHFHYTVWPDHGVPETTQSL 60 usage_00016.pdb 1 PVTVFGDIVITKLMEDVQIDWTIRDLKIER--H-GDCMTVRQCNFTAWPEHGVPENSAPL 57 usage_00027.pdb 1 -TEIYKDIKVTLIETELLAEYVIRTFAVEKRGV-HEIREIRQFHFTGWPDHGVPYHATGL 58 usage_00028.pdb 1 -TEIYKDIKVTLIETELLAEYVIRTFAVEKRGV-HEIREIRQFHFTGWPDHGVPYHATGL 58 usage_00048.pdb 1 GTETHGLVQVTLLDTVELATYCVRTFALYKNGS-SEKREVRQFQFTAWPDHGVPEHPTPF 59 usage_00049.pdb 1 GTETCGLIQVTLLDTVELATYTVRTFALHKSGS-SEKRELRQFQFMAWPDHGVPEYPTPI 59 usage_00078.pdb 1 -TEVYGDFKVTCVEMEPLAEYVVRTFTLERRGY-NEIREVKQFHFTGWPDHGVPYHATGL 58 usage_00084.pdb 1 GCWTYGNVRVSVEDVTVLVDYTVRKFCIQQ------QRLITQFHFTSWPDFGVPFTPIGM 54 l R f r qf ft WPdhGVP usage_00002.pdb 61 IQFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFIALDRILQQLDS-K-VDIYGAVHDLR 118 usage_00016.pdb 58 IHFVKLVRASR--AHDTTPMIVHSSAGVGRTGVFIALDHLTQHINDHDFVDIYGLVAELR 115 usage_00027.pdb 59 LGFVRQVKSKS--PPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELR 116 usage_00028.pdb 59 LGFVRQVKSKS--PPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELR 116 usage_00048.pdb 60 LAFLRRVKTCN--PPDAGPMVVHCSAGVGRTGCFIVIDAMLERIKHEKTVDIYGHVTLMR 117 usage_00049.pdb 60 LAFLRRVKACN--PLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMR 117 usage_00078.pdb 59 LSFIRRVKLSN--PPSAGPIVVHCSAGAGRTGCYIVIDIMLDMAEREGVVDIYNCVKALR 116 usage_00084.pdb 55 LKFLKKVKACN--PQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIR 112 F V agp vVHcSAG GRTG fi D l VDiY V R usage_00002.pdb 119 LHRVHMVQTECQYVYLHQCVRDVLR-- 143 usage_00016.pdb 116 SERMCMVQNLAQYIFLHQCILDLL--- 139 usage_00027.pdb 117 SRRVNMVQTEEQYVFIHDAILEACL-- 141 usage_00028.pdb 117 SRRVNMVQTEEQYVFIHDAILEACL-- 141 usage_00048.pdb 118 AQRNYMVQTEDQYIFIHDALLEAVT-- 142 usage_00049.pdb 118 SQRNYMVQTEDQYVFIHEALLEAAT-- 142 usage_00078.pdb 117 SRRINMVQTEEQYIFIHDAILEACLCG 143 usage_00084.pdb 113 AQRCQMVQTDMQYVFIYQALLEHYL-- 137 R MVQt QY f h l #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################