################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:48:33 2021 # Report_file: c_0838_1.html ################################################################################################ #==================================== # Aligned_structures: 17 # 1: usage_00001.pdb # 2: usage_00002.pdb # 3: usage_00003.pdb # 4: usage_00013.pdb # 5: usage_00024.pdb # 6: usage_00033.pdb # 7: usage_00038.pdb # 8: usage_00047.pdb # 9: usage_00048.pdb # 10: usage_00049.pdb # 11: usage_00055.pdb # 12: usage_00059.pdb # 13: usage_00077.pdb # 14: usage_00079.pdb # 15: usage_00085.pdb # 16: usage_00086.pdb # 17: usage_00087.pdb # # Length: 61 # Identity: 11/ 61 ( 18.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 20/ 61 ( 32.8%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 10/ 61 ( 16.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 --NSRYTHFLTQHYDAKPQGRDDRYCESIMRRRGLTS-PCKDINTFIHGNK-RSIKAICE 56 usage_00002.pdb 1 ----RYIHFLTQHYDAKPKGRNDEYCFNMMKNRRLTR-PCKDRNTFIHGNK-NDIKAICE 54 usage_00003.pdb 1 ---SRYTHFLTQHYDAKPQGRDDRYCESIMRRRGLTS-PCKDINTFIHGNK-RSIKAICE 55 usage_00013.pdb 1 ----RYTKFLTQHHDAKPKGRDDRYCERMMKRRSLTS-PCKDVNTFIHGNK-SNIKAICG 54 usage_00024.pdb 1 MQDGMYQRFLRQHVHPEETGGSDRYCNLMMQRRKMTLYHCKRFNTFIHEDI-WNIRSICS 59 usage_00033.pdb 1 ----RYTHFLTQHYDAKPQGRDDRYCESIMRRRGLTS-PCKDINTFIHGNK-RSIKAICS 54 usage_00038.pdb 1 ---SRYTHFLTQHYDAKPQGRDDRYCESIMRRRGLTS-DRCKPINTFIHGNKRSIKAICE 56 usage_00047.pdb 1 ---SRYTHFLTLHYDAKPQGRDDRYCESIMRRRGLTS-PCKDINTFIHGNK-RSIKAICE 55 usage_00048.pdb 1 ---SRYTHFLTQHYDAKPQGRDDRYCESIMRRRGLTS-PCKDINTFIHGNK-RSIKAICE 55 usage_00049.pdb 1 ----RYTHFLTQHYDAKPQGRDDRYCESIMRRRGLTS-PCKDINTFIHGNK-RSIKAI-- 52 usage_00055.pdb 1 ---SRYTHFLTQHYDAKPQGRDDRYCESIMRRRGLTS-PCKDINTFIHGNK-RSIKAICE 55 usage_00059.pdb 1 ---SRYTHFLTQHYDAKPQGRDDRYCESIMRRRGLTS-PCKDINTFIHGNK-RSIKAICE 55 usage_00077.pdb 1 ----RYTKFLTQHHDAKPKGRDDRYCERMMKRRSLTS-PCKDVNTFIHGNK-SNIKAICG 54 usage_00079.pdb 1 MQDGMYQRFLRQHVHPEETGGSDRYCNLMMQRRKMTLYHCKRFNTFIHEDI-WNIRSICS 59 usage_00085.pdb 1 ----RYIKFLTQHYDAKPTGRDYRYCESMMKKRKLTS-PCKEVNTFIHDTK-NNIKA--- 51 usage_00086.pdb 1 ----RYIKFLTQHYDAKPTGRDYRYCESMMKKRKLTS-PCKEVNTFIHDTK-NNIKA--- 51 usage_00087.pdb 1 ---SRYTHFLTQHYDAIPQGRDDRYCESIMRRRGLTS-PCKDINTFIHGNK-RSIKAI-- 53 Y FL qH G rYC M R T ck ntfih I usage_00001.pdb 57 N 57 usage_00002.pdb 55 D 55 usage_00003.pdb 56 N 56 usage_00013.pdb 55 A 55 usage_00024.pdb 60 T 60 usage_00033.pdb 55 Q 55 usage_00038.pdb 57 N 57 usage_00047.pdb 56 N 56 usage_00048.pdb 56 N 56 usage_00049.pdb - usage_00055.pdb 56 N 56 usage_00059.pdb 56 N 56 usage_00077.pdb 55 A 55 usage_00079.pdb 60 T 60 usage_00085.pdb - usage_00086.pdb - usage_00087.pdb - #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################