################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:29:53 2021 # Report_file: c_0030_1.html ################################################################################################ #==================================== # Aligned_structures: 16 # 1: usage_00001.pdb # 2: usage_00002.pdb # 3: usage_00003.pdb # 4: usage_00004.pdb # 5: usage_00005.pdb # 6: usage_00007.pdb # 7: usage_00008.pdb # 8: usage_00009.pdb # 9: usage_00010.pdb # 10: usage_00011.pdb # 11: usage_00016.pdb # 12: usage_00017.pdb # 13: usage_00018.pdb # 14: usage_00019.pdb # 15: usage_00022.pdb # 16: usage_00025.pdb # # Length: 202 # Identity: 105/202 ( 52.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 148/202 ( 73.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 43/202 ( 21.3%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 -NNVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGIL 59 usage_00002.pdb 1 -NNVVVLGTQWGDEGQGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGIL 59 usage_00003.pdb 1 -NNVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGIL 59 usage_00004.pdb 1 -NNVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGIL 59 usage_00005.pdb 1 -NNVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGIL 59 usage_00007.pdb 1 --NVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGIL 58 usage_00008.pdb 1 --NVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGIL 58 usage_00009.pdb 1 --NVVVLGTQWGDEGKGKVVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGIL 58 usage_00010.pdb 1 GRNVVVVGTQWGDEGKGKIVDWLTDHAQGVVRFQGGHNAGHTL-----ITILRLIPSGIM 55 usage_00011.pdb 1 --NVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGIL 58 usage_00016.pdb 1 -NNVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGIL 59 usage_00017.pdb 1 --NVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGIL 58 usage_00018.pdb 1 --NVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGIL 58 usage_00019.pdb 1 --NVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGIL 58 usage_00022.pdb 1 -NNVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGIL 59 usage_00025.pdb 1 -NNVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGIL 59 NVVVlGTQWGDEGkGKiVDlLTerAkyVVRyQGGHNAGHTL kTvLhLIPSGIl usage_00001.pdb 60 RENVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKA 119 usage_00002.pdb 60 RENVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKA 119 usage_00003.pdb 60 RENVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKA 119 usage_00004.pdb 60 RENVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKA 119 usage_00005.pdb 60 RENVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKA 119 usage_00007.pdb 59 RENVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKA 118 usage_00008.pdb 59 RENVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKA 118 usage_00009.pdb 59 RENVISIIGNGVVLAPDALMKEMTELEARGVPVRERLLLSEACPLILPYHVALDNAREKA 118 usage_00010.pdb 56 REGVACYIGNGVVLSPEALFKEIGELEEAGLSVRERLFISEATTLILPYHIAIDQAREA- 114 usage_00011.pdb 59 RENVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKA 118 usage_00016.pdb 60 RENVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKA 119 usage_00017.pdb 59 RENVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKA 118 usage_00018.pdb 59 RENVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKA 118 usage_00019.pdb 59 RENVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKA 118 usage_00022.pdb 60 RENVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKA 119 usage_00025.pdb 60 RENVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKA 119 REnV siIGNGVVLsP ALmKEm ELE rG pVRERLllSEAcpLIL YHvAlDnAREk usage_00001.pdb 120 R-GAKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKLKEVMEYHNFQLVNYYKAE 178 usage_00002.pdb 120 R-GAKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKLKEVMEYHNFQLVNYYKAE 178 usage_00003.pdb 120 R-GAKAIGTTGRGIGPAYEDKVALRGLRVGDLFDKETFAEKLKEVMEYHNFQLVNYYKAE 178 usage_00004.pdb 120 R-GAKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKLKEVMEYHNFQLVNYYKAE 178 usage_00005.pdb 120 R-GAKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKLKEVMEYHNFQLVNYYKAE 178 usage_00007.pdb 119 R-GAKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKLKEVMEYHNFQLVNYYKAE 177 usage_00008.pdb 119 R-GAKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKLKEVMEYHNFQLVNYYKAE 177 usage_00009.pdb 119 RG---------RGIGPAYEDKVARRGLRVSDLFNKETFAIKLKEIVEYHNFQLVHYYKEA 169 usage_00010.pdb 115 ----------GRGIGPAYEDKVGRRALRVQDLFDARTFADRLRENLDFHNFVLTQYLGGA 164 usage_00011.pdb 119 R-GAKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKLKEVMEYHNFQLVNYYKAE 177 usage_00016.pdb 120 R-GAKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKLKEVMEYHNFQLVNYYK-- 176 usage_00017.pdb 119 R-GAKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKLKEVMEYHNFQLVNYYK-- 175 usage_00018.pdb 119 R-GAKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKLKEVMEYHNFQLVNYYKAE 177 usage_00019.pdb 119 R-GAKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKLKEVMEYHNFQLVNYYKAE 177 usage_00022.pdb 120 R-GAKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKLKEVMEYHNFQLVNYYKAE 178 usage_00025.pdb 120 R-GAKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKLKEVMEYHNFQLVNYYKAE 178 RGIGPAYEDKVarRgLRV DLFdkeTFA kLkE eyHNFqLv Yyk usage_00001.pdb 179 AVDYQKVLDDTMAVA------- 193 usage_00002.pdb 179 AVDYQKVLDDTMAVA------- 193 usage_00003.pdb 179 AVDYQKVLDDTMAVA------- 193 usage_00004.pdb 179 AVDYQKVLDDTMAVA------- 193 usage_00005.pdb 179 AVDYQKVLDDTMAVA------- 193 usage_00007.pdb 178 AVDYQKVLDDTMAVA------- 192 usage_00008.pdb 178 AVDYQKVLDDTMAVA------- 192 usage_00009.pdb 170 AVDYQKVLDDVLA--------- 182 usage_00010.pdb 165 AVDFQATLDTMLGYAD------ 180 usage_00011.pdb 178 AVDYQKVLDDTMAVA------- 192 usage_00016.pdb ---------------------- usage_00017.pdb ---------------------- usage_00018.pdb 178 AVDYQKVLDDTMAVADILTSMV 199 usage_00019.pdb 178 AVDYQKVLDDTMA--------- 190 usage_00022.pdb 179 AVDYQKVLDDTMAVA------- 193 usage_00025.pdb 179 AVDYQKVLDDTMAVA------- 193 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################