################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:57:36 2021 # Report_file: c_0346_1.html ################################################################################################ #==================================== # Aligned_structures: 13 # 1: usage_00003.pdb # 2: usage_00018.pdb # 3: usage_00019.pdb # 4: usage_00025.pdb # 5: usage_00026.pdb # 6: usage_00027.pdb # 7: usage_00028.pdb # 8: usage_00029.pdb # 9: usage_00030.pdb # 10: usage_00034.pdb # 11: usage_00035.pdb # 12: usage_00037.pdb # 13: usage_00038.pdb # # Length: 136 # Identity: 16/136 ( 11.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 40/136 ( 29.4%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 32/136 ( 23.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00003.pdb 1 ---TRVRAELN-D-SITIQS-Q----IGRTGLD-------FEKHPYVSAVIEKR-----K 38 usage_00018.pdb 1 ----HCTLIKREDGKIIFDSPDTNSYCEYES--K-EFLGNDGKLDIFKSIYNRIVKDF-T 52 usage_00019.pdb 1 ----HCTLIKREDGKIIFDSPDTNSYCEYES--K-EFLGNDGKLDIFKSIYNRIVKDF-T 52 usage_00025.pdb 1 DRYAYAVIKTLTIPAVRFVS-TDQQVEKHQL--ISEPLELNGTLNLHKAVYNHMIRNYNH 57 usage_00026.pdb 1 DRYAYAVIKTLTIPAVRFVS-TDQQVEKHQL--ISEPLELNGTLNLHKAVYNHMIRNYNH 57 usage_00027.pdb 1 DRYAYAVIKTLTIPAVRFVS-TDQQVEKHQL--ISEPLELNGTLNLHKAVYNHMIRNYNH 57 usage_00028.pdb 1 DRYAYAVIKTLTIPAVRFVS-TDQQVEKHQL--ISEPLELNGTLNLHKAVYNHMIRNYNH 57 usage_00029.pdb 1 DRYAYAVIKTLTIPAVRFVS-TDQQVEKHQL--ISEPLELNGTLNLHKAVYNHMIRNYNH 57 usage_00030.pdb 1 DRYAYAVIKTLTIPAVRFVS-TDQQVEKHQL--ISEPLELNGTLNLHKAVYNHMIRNYNH 57 usage_00034.pdb 1 ---AYCTIEETNSGRIEINAYDAQCCKSYLS----SQLEIDGEASLIKGVYNRIIRDY-R 52 usage_00035.pdb 1 ---AYCTIEETNSGRIEINAYDAQCCKSYLS----SQLEIDGEASLIKGVYNRIIRDY-R 52 usage_00037.pdb 1 DRYAYAVIKTLTIPAVRFVS-TDQQVEKHQL--ISEPLELNGTLNLHKAVYNHMIRNYNH 57 usage_00038.pdb 1 DRYAYAVIKTLTIPAVRFVS-TDQQVEKHQL--ISEPLELNGTLNLHKAVYNHMIRNYNH 57 g k yn usage_00003.pdb 39 SIPINGVFLTVDSDIPVGSGLGSSAAVTIASIGALNELFGFGLSLQEIAKLGHEIEIK-V 97 usage_00018.pdb 53 -KKPLSFSLHTYSDVPSGSGLGGSSTLVVGVIKAFAEWLNLPLGEYEIAKLAYEIEREDL 111 usage_00019.pdb 53 -KKPLSFSLHTYSDVPSGSGLGGSSTLVVGVIKAFAEWLNLPLGEYEIAKLAYEIEREDL 111 usage_00025.pdb 58 -GKPIALELSTFCDAPAGSGLGSSSTLVVVMIKAFVELLNLPLDDYAIAQLAYRIERVDC 116 usage_00026.pdb 58 -GKPIALELSTFCDAPAGSGLGSSSTLVVVMIKAFVELLNLPLDDYAIAQLAYRIERVDC 116 usage_00027.pdb 58 -GKPIALELSTFCDAPAGSGLGSSSTLVVVMIKAFVELLNLPLDDYAIAQLAYRIERVDC 116 usage_00028.pdb 58 -GKPIALELSTFCDAPAGSGLGSSSTLVVVMIKAFVELLNLPLDDYAIAQLAYRIERVDC 116 usage_00029.pdb 58 -GKPIALELSTFCDAPAGSGLGSSSTLVVVMIKAFVELLNLPLDDYAIAQLAYRIERVDC 116 usage_00030.pdb 58 -GKPIALELSTFCDAPAGSGLGSSSTLVVVMIKAFVELLNLPLDDYAIAQLAYRIERVDC 116 usage_00034.pdb 53 -LEPKSFKITTYNDAPAGSGLGTSST-VVCILKAFIEWLSLPLGDYETSRLAYEIERKDL 110 usage_00035.pdb 53 -LEPKSFKITTYNDAPAGSGLGTSST-VVCILKAFIEWLSLPLGDYETSRLAYEIERKDL 110 usage_00037.pdb 58 -GKPIALELSTFCDAPAGSGLGSSSTLVVVMIKAFVELLNLPLDDYAIAQLAYRIERVDC 116 usage_00038.pdb 58 -GKPIALELSTFCDAPAGSGLGSSSTLVVVMIKAFVELLNLPLDDYAIAQLAYRIERVDC 116 p t D P GSGLG Sst vv kAf E l lpL y Lay IEr usage_00003.pdb 98 -QGAASPTDTYVSTF- 111 usage_00018.pdb 112 GI-VGGAQDQYAATFG 126 usage_00019.pdb 112 GI-VGGAQDQYAAT-- 124 usage_00025.pdb 117 GL-AGGRQDQYSATFG 131 usage_00026.pdb 117 GL-AGGRQDQYSATFG 131 usage_00027.pdb 117 GL-AGGRQDQYSATFG 131 usage_00028.pdb 117 GL-AGGRQDQYSATFG 131 usage_00029.pdb 117 GL-AGGRQDQYSATFG 131 usage_00030.pdb 117 GL-AGGRQDQYSATFG 131 usage_00034.pdb 111 GL-SGGKQDQYAAAF- 124 usage_00035.pdb 111 GL-SGGKQDQYAAAF- 124 usage_00037.pdb 117 GL-AGGRQDQYSATFG 131 usage_00038.pdb 117 GL-AGGRQDQYSATFG 131 gg qDqY a #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################