################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 22:59:26 2021 # Report_file: c_0328_65.html ################################################################################################ #==================================== # Aligned_structures: 4 # 1: usage_00264.pdb # 2: usage_00266.pdb # 3: usage_00478.pdb # 4: usage_00612.pdb # # Length: 259 # Identity: 17/259 ( 6.6%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 43/259 ( 16.6%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 94/259 ( 36.3%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00264.pdb 1 ----FDVKF-WNKLKSMMDEITKAME----N----DRLVNHNVQNLAIGFLTDLSLLVHY 47 usage_00266.pdb 1 ----FDVKF-WNKLKSMMDEITKAME----------RLVNHNVQNLAIGFLTDLSLLVHY 45 usage_00478.pdb 1 NVDQ---ILWKNAFYQVIEKFRQLVKDPNVENPEQIRNRLLELLDEGSDFFDSLLQKLQV 57 usage_00612.pdb 1 KVEQ---DLWNHAFKNQITTLQGQAKNRANP----NRSEVQANLSLFLEAASGFYTQLLQ 53 n k R l f l usage_00264.pdb 48 HYEIPNYGNDISKQLTWTPDVFL---NRKPIKS--KKNSRVFMAYVLLRMGDLMRY-K-- 99 usage_00266.pdb 46 HYEIPNYGNDISKQLTWTPDVFL---NRKPIKS--KKNSRVFMAYVLLRMGDLMRY-K-- 97 usage_00478.pdb 58 TYKF---KLEDY----MDGLAIRLRK------T--VKYALISAQRCMICQGDIARYREQA 102 usage_00612.pdb 54 ELC------------------------------TQSSSCSYICQHCLVHLGDIARY-R-- 80 y k l GD RY usage_00264.pdb 100 ---ENYPKAQEYYEQSCRINPADGAVWNQLGLISSLGAKNLESVYFHTRALHATMEFPTA 156 usage_00266.pdb 98 ---ENYPKAQEYYEQSCRINPADGAVWNQLGLISSLGAKNLESVYFHTRALHATMEFPTA 154 usage_00478.pdb 103 SDTANYGKARSWYLKAQHIAPKNGRPYNQLALLAVYTRRKLDAVYYYMRSLAASNPILTA 162 usage_00612.pdb 81 ---NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAA 137 ny kA yY i P G NQL l s L vy R l a fptA usage_00264.pdb 157 SGGLTNIFKNFANRD-------I---SRPM-------PIKDLYLSCLGRIHFLLE--IED 197 usage_00266.pdb 155 SGGLTNIFKNFANRD-------I---SRPM-------PIKDLYLSCLGRIHFLLE--IED 195 usage_00478.pdb 163 KESLMSLFEETKRKAEQMEKGL-----GSLSPSDLNKRFILSFLHAHGKLFTRIG----- 212 usage_00612.pdb 138 STNLQKALSKALESR-------DEVK-TKWGV----SDFIKAFIKFHGHVYLSKSLE--K 183 s L f l G usage_00264.pdb 198 SSVHLQKIGEEAA------ 210 usage_00266.pdb 196 SSVHLQKIGEEAA------ 208 usage_00478.pdb 213 METFP-------------- 217 usage_00612.pdb 184 LSPLREKLEEQFKELLFQK 202 s #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################