################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:11:52 2021 # Report_file: c_0444_3.html ################################################################################################ #==================================== # Aligned_structures: 5 # 1: usage_00001.pdb # 2: usage_00003.pdb # 3: usage_00008.pdb # 4: usage_00011.pdb # 5: usage_00013.pdb # # Length: 89 # Identity: 3/ 89 ( 3.4%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 16/ 89 ( 18.0%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 23/ 89 ( 25.8%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 ---GNTLYVYGE------DMTPTLLRGAFSP-FGNIIDLSM-DP----PRNCAFVTYEKM 45 usage_00003.pdb 1 -----SLVVANGGLG-N-GVSRNQLLPVLEK-CGLVDALLM-PP----NKPYSFARYRTT 47 usage_00008.pdb 1 ----ADVYVGNL---PR-DARVSDLKRALRELGSVPLRLTW-QG----PRRRAFLHYPDS 47 usage_00011.pdb 1 PRKGNTLYVYGE------DMTPTLLRGAFSP-FGNIIDLSM-DP----PRNCAFVTYEKM 48 usage_00013.pdb 1 ----CTLWMTNF---P-PSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSK 52 l v l l r af y usage_00001.pdb 46 ESADQAVAELNGTQVE-----SVQLKVNI 69 usage_00003.pdb 48 EESKRAYVTLNGKEVVDDLGQKITLYLNF 76 usage_00008.pdb 48 AAAQQAVSCLQGLRLG-----TDTLRVAL 71 usage_00011.pdb 49 ESADQAVAELNGTQVE-----SVQLKVN- 71 usage_00013.pdb 53 EDARYCVEKLNGLKIE-----GYTLVTKV 76 e a av LnG L #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################