################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:11:29 2021 # Report_file: c_0101_12.html ################################################################################################ #==================================== # Aligned_structures: 14 # 1: usage_00005.pdb # 2: usage_00058.pdb # 3: usage_00059.pdb # 4: usage_00068.pdb # 5: usage_00168.pdb # 6: usage_00169.pdb # 7: usage_00297.pdb # 8: usage_00312.pdb # 9: usage_00339.pdb # 10: usage_00340.pdb # 11: usage_00341.pdb # 12: usage_00342.pdb # 13: usage_00343.pdb # 14: usage_00344.pdb # # Length: 247 # Identity: 101/247 ( 40.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 130/247 ( 52.6%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 102/247 ( 41.3%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00005.pdb 1 CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQA 60 usage_00058.pdb 1 -PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDR---A 56 usage_00059.pdb 1 -PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQA 59 usage_00068.pdb 1 SPKARQEVDHHWQASGGPHIVCILDVYENMHHGKRCLLIIMECMEGGELFSRIQER-DQA 59 usage_00168.pdb 1 -PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRG--A 57 usage_00169.pdb 1 -PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRG--A 57 usage_00297.pdb 1 -PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQD----- 54 usage_00312.pdb 1 -PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIV-ECLDGGELFSRIQDRGDQA 58 usage_00339.pdb 1 -PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQA 59 usage_00340.pdb 1 --KARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQA 58 usage_00341.pdb 1 CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDR---A 57 usage_00342.pdb 1 CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQA 60 usage_00343.pdb 1 CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQA 60 usage_00344.pdb 1 CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQA 60 KARrEVelHWrASqcPHIVrIvDVYENlyaGrkCLLIv ECldGGELFSRIQd usage_00005.pdb 61 FTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSH 120 usage_00058.pdb 57 FTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT-- 114 usage_00059.pdb 60 FTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT-- 117 usage_00068.pdb 60 FTEREAAEIMRDIGTAIQFLHSHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKE---- 115 usage_00168.pdb 58 FTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT-- 115 usage_00169.pdb 58 FTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT-- 115 usage_00297.pdb 55 -TEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT-- 111 usage_00312.pdb 59 FTEREASEI-KSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT-- 115 usage_00339.pdb 60 FTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT-S 118 usage_00340.pdb 59 FTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT-S 117 usage_00341.pdb 58 FTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKET--- 114 usage_00342.pdb 61 FTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT-S 119 usage_00343.pdb 61 FTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT-S 119 usage_00344.pdb 61 FTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT-S 119 TEREAsEI ksIGeAIQyLHSiNIAHRDVKPENLLYTSKrpnAiLKLTDFGFAKE usage_00005.pdb 121 NSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPF-------------- 166 usage_00058.pdb 115 ---------PYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPG-MK 164 usage_00059.pdb 118 ---------PYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYS--------G-MK 159 usage_00068.pdb 116 --------------------EKYDKSCDMWSLGVIMYILLCGFPPF-------------- 141 usage_00168.pdb 116 ---------PYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYP--------G-MK 157 usage_00169.pdb 116 ---------PYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSN--SP---G-MK 160 usage_00297.pdb 112 --------------PEVL-----DKSCDMWSLGVIMYILLCGYPPFYS--------G-MK 143 usage_00312.pdb 116 ---------PYYVAPEVLGPEKYDKSCD-WSLGV-IYILLCGYPPFYSNHGLA-ISPGKT 163 usage_00339.pdb 119 ------------------GPEKYDKSCDMWSLGVIMYILLCGYPPFYSN-HGL-AIS-PG 157 usage_00340.pdb 118 ------------------GPEKYDKSCDMWSLGVIMYILLCGYPPFYSN-H-----G--- 150 usage_00341.pdb 115 ---------PYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYS----------MK 155 usage_00342.pdb 120 -----------YVAPEVL----YDKSCDMWSLGVIMYILLCGYPPFYSN--SP---G-MK 158 usage_00343.pdb 120 -----------YVAPEVL----YDKSCDMWSLGVIMYILLCGYPPFYSN--SP---G-MK 158 usage_00344.pdb 120 ------------VAPEVL----YDKSCDMWSLGVIMYILLCGYPPFY----SP---G-MK 155 DKSCD WSLGV mYILLCGyPPF usage_00005.pdb 167 --------YEFP-------------NPEWS-EVSEEVKMLIRNLLKTEP-TQRMTITEFM 203 usage_00058.pdb 165 TRIRMGQ-YEFP-------------N-PEW-SEVSEEVKMLIRNLLKTEPTQRMTITEFM 208 usage_00059.pdb 160 TRIRMGQ-YEFP-------------N-PEW-SEVSEEVKMLIRNLLK------------- 190 usage_00068.pdb 142 ---------GFP-------------N-PEW-SEVSEDAKQLIRLLLKTDPTERLTITQFM 177 usage_00168.pdb 158 TRIRMGQ-YEFP-------------N-PEW-SEVSEEVKMLIRNLLK------------- 188 usage_00169.pdb 161 TRIRMGQ-YEFP-------------N-PEW-SEVSEEVKMLIRNLLKTEPTQRMTITEFM 204 usage_00297.pdb 144 TRIRMGQ-YEFP-------------N-PEW-SEVSEEVKMLIRNLLKTEPTQRMTITEFM 187 usage_00312.pdb 164 R--IRGQ-YEFP-------------N-PEW-SEVSEEVK-LIRNLLKTEPTQRTI-TEF- 202 usage_00339.pdb 158 MKTRI-RMYEFP-------------NPEWS-EVSEEVKMLIRNLLK-------------- 188 usage_00340.pdb 151 ------L-AI--SPGMKTRIRMGQYN-PEWSEVSEEVKMLIRNLLKTEP-TQRMTITEFM 199 usage_00341.pdb 156 TRIRMGQ-YEFP-------------N-PEW-SEVSEEVKMLIRNLLKTEPTQRMTITEFM 199 usage_00342.pdb 159 TRIRMGQ-YEFP-------------N-PEW-SEVSEEVKMLIRNL--------------- 187 usage_00343.pdb 159 TRIRMGQ-YEFP-------------N-PEW-SEVSEEVKMLIRNL--------------- 187 usage_00344.pdb 156 TRIRMGQ-YEFP-------------N-PEW-SEVSEEVKMLIRNLLKTEPTQRMTITEFM 199 N E L usage_00005.pdb 204 NHPWIMQ 210 usage_00058.pdb 209 NH----- 210 usage_00059.pdb ------- usage_00068.pdb 178 NH----- 179 usage_00168.pdb ------- usage_00169.pdb 205 NH----- 206 usage_00297.pdb 188 NH----- 189 usage_00312.pdb 203 NH----- 204 usage_00339.pdb ------- usage_00340.pdb 200 NH----- 201 usage_00341.pdb 200 NH----- 201 usage_00342.pdb ------- usage_00343.pdb ------- usage_00344.pdb 200 NH----- 201 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # 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