################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:55:34 2021 # Report_file: c_0057_1.html ################################################################################################ #==================================== # Aligned_structures: 13 # 1: usage_00003.pdb # 2: usage_00004.pdb # 3: usage_00005.pdb # 4: usage_00006.pdb # 5: usage_00007.pdb # 6: usage_00009.pdb # 7: usage_00010.pdb # 8: usage_00011.pdb # 9: usage_00017.pdb # 10: usage_00020.pdb # 11: usage_00029.pdb # 12: usage_00032.pdb # 13: usage_00033.pdb # # Length: 176 # Identity: 19/176 ( 10.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 59/176 ( 33.5%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 37/176 ( 21.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00003.pdb 1 YNVAQKALFDTEFG-KDLIKKMDKDLGVTLLSQAYNGTRQTTSNRAINSIADMKGLKLRV 59 usage_00004.pdb 1 YNVAQKALFDTEFG-KDLIKKMDKDLGVTLLSQAYNGTRQTTSNRAINSIADMKGLKLRV 59 usage_00005.pdb 1 YNVAQKALFDTEFG-KDLIKKMDKDLGVTLLSQAYNGTRQTTSNRAINSIADMKGLKLRV 59 usage_00006.pdb 1 YNVAQKALFDTEFG-KDLIKKMDKDLGVTLLSQAYNGTRQTTSNRAINSIADMKGLKLRV 59 usage_00007.pdb 1 YNVAQKALFDTEFG-KDLIKKMDKDLGVTLLSQAYNGTRQTTSNRAINSIADMKGLKLRV 59 usage_00009.pdb 1 YNVAQKALFDTEFG-KDLIKKMDKDLGVTLLSQAYNGTRQTTSNRAINSIADMKGLKLAV 59 usage_00010.pdb 1 YNVAQKALFDTEFG-KDLIKKMDKDLGVTLLSQAYNGTRQTTSNRAINSIADMKGLKLRV 59 usage_00011.pdb 1 YNVAQKALFDTEFG-KDLIKKMDKDLGVTLLSQAYNGTRQTTSNRAINSIADMKGLKLRV 59 usage_00017.pdb 1 -DHARRAMEGK--TFDLINEGFTEKSGLRTLNAFPLGFRHFYSKKP---------MRMRV 48 usage_00020.pdb 1 PAQLFKVY-DGPWF-KEKSEELKK-KGIHIVPNYLYGIRQIISKKPIRTPEDLK-GKIRV 56 usage_00029.pdb 1 YNVAQKALFDTEFG-KDLIKKMDKDLGVTLLSQAYNGTRQTTSNRAINSIADMKGLKLRV 59 usage_00032.pdb 1 YNVAQKALFDTEFG-KDLIKKMDKDLGVTLLSQAYNGTRQTTSNRAINSIADMKGLKLRV 59 usage_00033.pdb 1 YNVAQKALFDTEFG-KDLIKKMDKDLGVTLLSQAYNGTRQTTSNRAINSIADMKGLKLEV 59 a ka d k k G l G Rq S k V usage_00003.pdb 60 PNAATNLAYAKYVGASPTPMAFSEVYLALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTN 119 usage_00004.pdb 60 PNAATNLAYAKYVGASPTPMAFSEVYLALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTN 119 usage_00005.pdb 60 PNAATNLAYAKYVGASPTPMAFSEVYLALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTN 119 usage_00006.pdb 60 PNAATNLAYAKYVGASPTPMAFSEVYLALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTN 119 usage_00007.pdb 60 PNAATNLAYAKYVGASPTPMAFSEVYLALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTN 119 usage_00009.pdb 60 PNAATNLAYAKYVGASPTPMAFSEVYLALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTN 119 usage_00010.pdb 60 PNAATNLAYAKYVGASPTPMAFSEVYLALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTN 119 usage_00011.pdb 60 PDAATNLAYAKYVGASPTPMAFSEVYLALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTN 119 usage_00017.pdb 49 PNIPLYTNFAKECGISGQPMPFAEVPGALDQGVIDGGDSPLADIVSLKMYEITPEISLSG 108 usage_00020.pdb 57 PNNV-QIKTFEAG-ATPT-PPLGETFPALAQGVIDGVENPISVLYGQKFQEEAKYLSKVG 113 usage_00029.pdb 60 PNAATNLAYAKYVGASPTPMAFSEVYLALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTN 119 usage_00032.pdb 60 PNAATNLAYAKYVGASPTPMAFSEVYLALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTN 119 usage_00033.pdb 60 PNAATNLAYAKYVGASPTPMAFSEVYLALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTN 119 Pn ak aspt m f Ev AL DG enPla qKfyE k l usage_00003.pdb 120 HILNDQLYLVSNETYKELPEDLQKVVKDAAENAAKYHTKLFVDGEKDLVTFFEKQG 175 usage_00004.pdb 120 HILNDQLYLVSNETYKELPEDLQKVVKDAAENAAKYHTKLFVDGEKD--------- 166 usage_00005.pdb 120 HILNDQLYLVSNETYKELPEDLQKVVKDAAENAAKYHTKLFVDGEKD--------- 166 usage_00006.pdb 120 HILNDQLYLVSNETYKELPEDLQKVVKDAAENAAKYHTKLFVDGEKD--------- 166 usage_00007.pdb 120 HILNDQLYLVSNETYKELPEDLQKVVKDAAENAAKYHTKLFVDGEKD--------- 166 usage_00009.pdb 120 HILNDQLYLVSNETYKELPEDLQKVVKDAAENAAKYHTKLFVDGEKD--------- 166 usage_00010.pdb 120 HILNDQLYLVSNETYKELPEDLQKVVKDAAENAAKYHTKLFVDGEKD--------- 166 usage_00011.pdb 120 HILNDQLYLVSNETYKELPEDLQKVVKDAAENAAKYHTKLFVDGEKD--------- 166 usage_00017.pdb 109 HILVIHSLYINDKFFKSLPEQDQKWIEEAAKRSADDVWAM---------------- 148 usage_00020.pdb 114 YLTNVALIVGGEAFFSTLPEDQLK-IHESAYDAGLYSQ------------------ 150 usage_00029.pdb 120 HILNDQLYLVSNETYKELPEDLQKVVKDAAENAAKYHTKLFVDGEKD--------- 166 usage_00032.pdb 120 HILNDQLYLVSNETYKELPEDLQKVVKDAAENAAKYHTKLFVDGEKD--------- 166 usage_00033.pdb 120 HILNDQLYLVSNETYKELPEDLQKVVKDAAENAAKYHTKLFVDGEKD--------- 166 hiln l k LPEd qK aA aa y #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################