################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 05:43:20 2021 # Report_file: c_0427_1.html ################################################################################################ #==================================== # Aligned_structures: 41 # 1: usage_00002.pdb # 2: usage_00003.pdb # 3: usage_00004.pdb # 4: usage_00005.pdb # 5: usage_00006.pdb # 6: usage_00007.pdb # 7: usage_00010.pdb # 8: usage_00011.pdb # 9: usage_00012.pdb # 10: usage_00014.pdb # 11: usage_00015.pdb # 12: usage_00016.pdb # 13: usage_00020.pdb # 14: usage_00021.pdb # 15: usage_00022.pdb # 16: usage_00023.pdb # 17: usage_00024.pdb # 18: usage_00025.pdb # 19: usage_00027.pdb # 20: usage_00028.pdb # 21: usage_00039.pdb # 22: usage_00042.pdb # 23: usage_00043.pdb # 24: usage_00044.pdb # 25: usage_00045.pdb # 26: usage_00046.pdb # 27: usage_00049.pdb # 28: usage_00052.pdb # 29: usage_00056.pdb # 30: usage_00057.pdb # 31: usage_00058.pdb # 32: usage_00059.pdb # 33: usage_00060.pdb # 34: usage_00061.pdb # 35: usage_00062.pdb # 36: usage_00063.pdb # 37: usage_00064.pdb # 38: usage_00068.pdb # 39: usage_00069.pdb # 40: usage_00071.pdb # 41: usage_00073.pdb # # Length: 103 # Identity: 5/103 ( 4.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 6/103 ( 5.8%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 62/103 ( 60.2%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00002.pdb 1 -------------RFYYRDSVK-GRFTISRDNAKSTLYLQMDSLRSEDTATYYCTR---- 42 usage_00003.pdb 1 ------------GRFYYRDSVK-GRFTISRDNAKSTLYLQMDSLRSEDTATYYCTR---- 43 usage_00004.pdb 1 ------------GRFYYRDSVK-GRFTISRDNAKSTLYLQMDSLRSEDTATYYCTR---- 43 usage_00005.pdb 1 ------------GRFYYRDSVK-GRFTISRDNAKSTLYLQMDSLRSEDTATYYCTR---- 43 usage_00006.pdb 1 ------------RNKYYADSVK-GRFTVSRDNSKNTLYLQMNSLRAEDTSVYYCARELL- 46 usage_00007.pdb 1 -------------EVHYNQDFK-DRFTISRDKSKNTLYLQMNSLRPEDTAVYYCARGFL- 45 usage_00010.pdb 1 ------------NIIAYADSVK-GRFTISRDNAKNSLYLEMNSLRVEDTALYYCAKDSPR 47 usage_00011.pdb 1 ------------SYTYYPDNVK-GRFTISRDIAKNTLYLQMSSLRSEDTAMYYCARHPP- 46 usage_00012.pdb 1 ------------SYTYYPDNVK-GRFTISRDIAKNTLYLQMSSLRSEDTAMYYCARHPP- 46 usage_00014.pdb 1 ------------GSTYYADSVK-GRFTISRDNSKNTLYLQMNSLRAEDTAVYYCASALE- 46 usage_00015.pdb 1 -------------GTVYNQHFT-DKARLTVDTSSSTAYMQFSSLTTEDSAIYYCARYRY- 45 usage_00016.pdb 1 ------------SNTLYADSVK-GRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARGLG- 46 usage_00020.pdb 1 -------------YTYYPDSVK-GRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDG 46 usage_00021.pdb 1 ------------DIVFYATWAK-GRFTISKTS-STTVTLQMTSLTAADTATYFCARENF- 45 usage_00022.pdb 1 -------------STTYNPSLK-GRVTISIDSSTNQFSLKVTSVIAADTAVYYCARAPS- 45 usage_00023.pdb 1 -----------KWYNNYAVSVK-SRITINPDTSKNQFSLQLNSVTPEDTAVYYCARYSY- 47 usage_00024.pdb 1 ------------SYTYYPDSVK-GRFTISKDNARNTLYLQMSSLRSGDTALYYCTRFRY- 46 usage_00025.pdb 1 ------------SSTYYLDSLK-GRFIISRDIAKNILYLQMSSLRCEDTATYYCARLTN- 46 usage_00027.pdb 1 ------------YTTYYADSVK-GRFTISRDNSKNTLYLQMNSLRTEDTAVYYCAKPWY- 46 usage_00028.pdb 1 ------------TYKYYADSVK-GRFTISRDNAENSIFLQMNSLRAEDTAVYYCARDRS- 46 usage_00039.pdb 1 ------------GITVYADSVK-GRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAYRRIG 47 usage_00042.pdb 1 -------------DTHYQDSVK-GRFTTSRDNARNILTLQMSSLRSEDTAMYYCARNRG- 45 usage_00043.pdb 1 -------------DTSYNQKFR-DKATLTADKSSSTAYMQLSSLTSEDSAVYHCARGGS- 45 usage_00044.pdb 1 -------------GTQYNEEFR-GKATLTSDKSSNTAYMELSSLTSEDSAVYYCASRS-- 44 usage_00045.pdb 1 ------------GTTSYNPSLK-SRISITRDTSKNQFFLQLNSVTTEDTATYFCVRGYD- 46 usage_00046.pdb 1 ------------GTTSYNPSLK-SRISITRDTSKNQFFLQLNSVTTEDTATYFCVRGYD- 46 usage_00049.pdb 1 -------------ATFYADSVK-DRFTISRDDSQSMLYLQMHNLKTDDTAMYYCVRPSI- 45 usage_00052.pdb 1 ------------GRPTYADDFK-GRFAFSLETSASTAYLQINNLKHEDTATYFCASL--- 44 usage_00056.pdb 1 ------------GSTYYADSVK-GRFTISRDNSKNTLYLQMNSLRAEDTAVYYCVKDRV- 46 usage_00057.pdb 1 ------------GSTYYADSVK-GRFTISRDNSKNTLYLQMNSLRAEDTAVYYCVKDRV- 46 usage_00058.pdb 1 ------------GRTDYNSALK-SRLSISRDTSKSQVFLKMNS--TDDTAIYFCTRCRR- 44 usage_00059.pdb 1 -------------DPAYADDFK-GRFAFSLETSVRTAYLQINNLKNEDTAIYFCAREDD- 45 usage_00060.pdb 1 ------------GSTYYADSVK-GRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYID- 46 usage_00061.pdb 1 ------------GSTYYADSVK-GRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYID- 46 usage_00062.pdb 1 -------------KKHYNPSLK-DRLTISKDTSKNQVVLKVTNMDPADTATYYCARDMI- 45 usage_00063.pdb 1 -------------DTSYNLALN-SRLSISRDTSKSQVFFKMSSLQTEDTATYYCARPEL- 45 usage_00064.pdb 1 ------------GGGAYNQKFR-VKATLTVDTSSSTAYIHLNSLTSEDSAVYYCAIFYGN 47 usage_00068.pdb 1 -------------LLYFSDSVK-GRFTISRDIVRNILTLQMSRLRSEDTAIYYCARGTS- 45 usage_00069.pdb 1 GLNWMGWVNTETGEPTYADDFK-GRFAFSLETSASTAYLQINSLKNEDTATYFCARFLL- 58 usage_00071.pdb 1 --------------TYYADSVK-GRFTISRDNSKNTLYLQMNSLTACDTAVYYCARFAG- 44 usage_00073.pdb 1 --------------TTYNPSL-KSRFSITRDTSKNQFFLQLHSVTIEDTGTYFCTREG-- 43 y D Y C usage_00002.pdb 43 -----------------------------M-DYWGQGTTVTVS 55 usage_00003.pdb 44 -----------------------------M-DYWGQGTTVTVS 56 usage_00004.pdb 44 -----------------------------M-DYWGQGTTVTVS 56 usage_00005.pdb 44 -----------------------------M-DYWGQGTTVTVS 56 usage_00006.pdb 47 M----D-----Y-YDHI-------GY-SPG-PTWGQGTLVTVS 70 usage_00007.pdb 46 -------------------------P-W-F-ADWGQGTLVTVS 60 usage_00010.pdb 48 G-----------------------EL-P-L-NYWGQGTLVTVS 64 usage_00011.pdb 47 T--V-----------VA-------GD-A-M-DYWGQGTSVTVS 66 usage_00012.pdb 47 T--V-----------VA-------GD-A-M-DYWGQGTSVTVS 66 usage_00014.pdb 47 -----P--------L----------SEP-L-GFWGQGTLVTVS 64 usage_00015.pdb 46 D------------------------E-G-F-AYWGQGTLVTVS 61 usage_00016.pdb 47 A----F-----H---W--------DM-Q-P-DYWGQGTLVTVS 66 usage_00020.pdb 47 G-----------------------DE-G-F-AYWGQGTVVTVS 63 usage_00021.pdb 46 DAVG------------VGGGTYSTDY-Y-F-DLWG-------- 65 usage_00022.pdb 46 GYPGVS---------LY------QYY-G-L-DVWGQGTTVTVS 70 usage_00023.pdb 48 P-----------------------FY-S-I-DYWGQGTLVT-- 62 usage_00024.pdb 47 D-----------------------GW-Y-F-DVWGQGTTVTV- 62 usage_00025.pdb 47 -------------------------G-Y-L-DVWGAGTTVTV- 60 usage_00027.pdb 47 P----F-----MASK---------GS-E-F-DYWGQGTLVTVS 68 usage_00028.pdb 47 Y----YAFGSLS-D-Y--------YY-G-L-DVWGQGTLVTVS 72 usage_00039.pdb 48 V----P--------R----------RD--EFDIWGQGTMVTVS 66 usage_00042.pdb 46 -------------------------W-Y-F-DVWGAGTTVTVS 60 usage_00043.pdb 46 -------------------------G-L-L-AYWGQGTLVTVS 60 usage_00044.pdb 45 -------------------------------GPWGQGTTLTVS 56 usage_00045.pdb 47 Y------------------------F-A-M-DYWGQGTSVTV- 61 usage_00046.pdb 47 Y------------------------F-A-M-DYWGQGTSVTV- 61 usage_00049.pdb 46 Y----Y---------YA-------SG-Y-L-DVWGAGTTVTV- 64 usage_00052.pdb 45 ---------------------------G-E-DFWGQGTTLTV- 57 usage_00056.pdb 47 A----V-----A-GKG--------SY-Y-F-DSWGRGTTVTVS 68 usage_00057.pdb 47 A----V-----A-GKG--------SY-Y-F-DSWGRGTTVTVS 68 usage_00058.pdb 45 D---------------S-------SY-V-V-DAWGQGASVTVS 62 usage_00059.pdb 46 ---------------------------G-L-ASWGQGTTLTVS 59 usage_00060.pdb 47 F-----------------------GD-H-M-DFWGQGTLVTVS 63 usage_00061.pdb 47 F-----------------------GD-H-M-DFWGQGTLVTVS 63 usage_00062.pdb 46 F-----------------------NF-Y-F-DVWGQGTTVTVS 62 usage_00063.pdb 46 P----G---------LT------YGV-W-F-PYWGQGTLVTVS 66 usage_00064.pdb 48 ---------------------------F-F-DYWGQGTTVTVS 61 usage_00068.pdb 46 F-----------------------VR-Y-F-DVWGAGTTVTVS 62 usage_00069.pdb 59 R------------------------Q-Y-F-DVWGAGTTVTVS 74 usage_00071.pdb 45 G-----------------------WG-A-Y-DVWGQGTLVTVS 61 usage_00073.pdb 44 -------------------------------DYWGQGTTLTV- 54 WG #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################