################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:19:49 2021 # Report_file: c_1212_171.html ################################################################################################ #==================================== # Aligned_structures: 5 # 1: usage_00539.pdb # 2: usage_00540.pdb # 3: usage_00667.pdb # 4: usage_00833.pdb # 5: usage_01234.pdb # # Length: 61 # Identity: 0/ 61 ( 0.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 4/ 61 ( 6.6%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 32/ 61 ( 52.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00539.pdb 1 ------EPLKLKVVFA--EI-------S---ESLEVIALTCD-TIQQVKEKILQTFQRK- 40 usage_00540.pdb 1 ------EPLKLKVVFAE-EI-------S---ESLEVIALTCD-TIQQVKEKILQTFQRKF 42 usage_00667.pdb 1 ----EYRPLTLNALLA----VGPGAGEA---QGVPVKVLDCD-TISQAKEKMLDQLYK-- 46 usage_00833.pdb 1 EEAMA--IL-FAVVAR-GTT-------I---LAKHAW--CGGNFLEVTEQILAKI----- 39 usage_01234.pdb 1 ------ESFFVQVHDV--S---------PEQPLTVIKAPRVS-TAQDVIQQTLCKA---- 38 l v t l usage_00539.pdb - usage_00540.pdb 43 G 43 usage_00667.pdb - usage_00833.pdb - usage_01234.pdb - #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################