################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:34:28 2021 # Report_file: c_0577_4.html ################################################################################################ #==================================== # Aligned_structures: 16 # 1: usage_00004.pdb # 2: usage_00005.pdb # 3: usage_00031.pdb # 4: usage_00065.pdb # 5: usage_00067.pdb # 6: usage_00068.pdb # 7: usage_00083.pdb # 8: usage_00086.pdb # 9: usage_00087.pdb # 10: usage_00105.pdb # 11: usage_00107.pdb # 12: usage_00108.pdb # 13: usage_00114.pdb # 14: usage_00115.pdb # 15: usage_00116.pdb # 16: usage_00125.pdb # # Length: 76 # Identity: 13/ 76 ( 17.1%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 22/ 76 ( 28.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 18/ 76 ( 23.7%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00004.pdb 1 PYTIVYFPVRGRCEAMRMLLADQGQSWKEEVVT----------------QLPKFEDGDLT 44 usage_00005.pdb 1 PYTIVYFPVRGRCEAMRMLLADQGQSWKEEVVTI---------------QLPKFEDGDLT 45 usage_00031.pdb 1 PYTVVYFPVRGRCAALRMLLADQGQSWKEEVVTVETWQEGSLKASCLYGQLPKFQDGDLT 60 usage_00065.pdb 1 PYTIVYFPVRGRCEAMRMLLADQGQSWKEEVVTIDTWMQGLLKPTCLYGQLPKFEDGDLT 60 usage_00067.pdb 1 HYKLTYFNGRGAGECARQVFALADQKYEDVRLTQETFV-P-LKATFPFGQVPVLEVDGQQ 58 usage_00068.pdb 1 KYTLTYFNGRGRAEVIRLLFALANVSYEDNRITRDEWK-Y-LKPRTPFGHVPMLNVSGNV 58 usage_00083.pdb 1 PYTVVYFPVRGRCAALRMLLADQGQSWKEEVVTVETWQEGSLKASCLYGQLPKFQDGDLT 60 usage_00086.pdb 1 PYTVVYFPVRGRCAALRMLLADQGQSWKEEVVTV----------SCLYGQLPKFQDGDLT 50 usage_00087.pdb 1 PYTVVYFPVRGRCAALRMLLADQGQSWKEEVVTW-----------CLYGQLPKFQDGDLT 49 usage_00105.pdb 1 PYTVVYFPVRGRCAALRMLLADQGQSWKEEVVTVETWQEGSLKASCLYGQLPKFQDGDLT 60 usage_00107.pdb 1 PYTVVYFPVRGRCAALRMLLADQGQSWKEEVVTVETWQEGSLKASCLYGQLPKFQDGDLT 60 usage_00108.pdb 1 PYTVVYFPVRGRCAALRMLLADQGQSWKEEVVTVETWQEGSLKASCLYGQLPKFQDGDLT 60 usage_00114.pdb 1 PYTVVYFPVRGRCAALRMLLADQGQSWKEEVVTV-------------Y-QLPKFQDGDLT 46 usage_00115.pdb 1 PYTVVYFPVRGRCAALRMLLADQGQSWKEEVVTV-------------Y-QLPKFQDGDLT 46 usage_00116.pdb 1 PYTVVYFPVRGRCAALRMLLADQGQSWKEEVVTVETWQEGSLKASCLYGQLPKFQDGDLT 60 usage_00125.pdb 1 PYTVVYFPVRGRCAALRMLLADQGQSWKEEVVTVETWQEGSLKASCLYGQLPKFQDGDLT 60 Yt YF RGr R l A qs T q P usage_00004.pdb 45 LYQSNAILRHLGRS-- 58 usage_00005.pdb 46 LYQSNAILRHLGRS-- 59 usage_00031.pdb 61 LYQSNTILRHLGRTLG 76 usage_00065.pdb 61 LYQSNAILRHLGRSLG 76 usage_00067.pdb 59 LAQSQAICRYLAKTF- 73 usage_00068.pdb 59 LGESHAIELLLGGRFG 74 usage_00083.pdb 61 LYQSNTILRHLGRTLG 76 usage_00086.pdb 51 LYQSNTILRHLGRT-- 64 usage_00087.pdb 50 LYQSNTILRHLGRT-- 63 usage_00105.pdb 61 LYQSNTILRHLGRT-- 74 usage_00107.pdb 61 LYQSNTILRHLGRT-- 74 usage_00108.pdb 61 LYQSNTILRHLGRTLG 76 usage_00114.pdb 47 LYQSNTILRHLGRT-- 60 usage_00115.pdb 47 LYQSNTILRHLGRT-- 60 usage_00116.pdb 61 LYQSNTILRHLGRTLG 76 usage_00125.pdb 61 LYQSNTILRHLGRTLG 76 L qS I r Lg #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################