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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Thu Jan 21 22:59:24 2021
# Report_file: c_1485_27.html
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#====================================
# Aligned_structures: 3
#   1: usage_01396.pdb
#   2: usage_01660.pdb
#   3: usage_01661.pdb
#
# Length:         94
# Identity:       41/ 94 ( 43.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     62/ 94 ( 66.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           32/ 94 ( 34.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_01396.pdb         1  NAVYTAFNTAKQQAKDLPDYDVPPHLRNA----PTNLAG----------------ENYFP   40
usage_01660.pdb         1  NAVYTAFKAALADARERPDYDVPVHLRNA----P-----TEYRYAHDEANAYAAGEVYFP   51
usage_01661.pdb         1  NAVYTAFKAALADARERPDYDVPVHLRNAPYGQ-------EYRYAHDEANAYAAGEVYFP   53
                           NAVYTAFkaAladArerPDYDVPvHLRNA                          EvYFP

usage_01396.pdb        41  PELKDTQYYFPTNRGMEIQIKEKLERLR------   68
usage_01660.pdb        52  PEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNS   85
usage_01661.pdb        54  PEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNS   87
                           PEiaqTrYYFPTNRGlEgkIgEKLawLa      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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