################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:32:41 2021 # Report_file: c_0656_175.html ################################################################################################ #==================================== # Aligned_structures: 6 # 1: usage_00104.pdb # 2: usage_00275.pdb # 3: usage_00316.pdb # 4: usage_00558.pdb # 5: usage_01099.pdb # 6: usage_01101.pdb # # Length: 65 # Identity: 8/ 65 ( 12.3%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 21/ 65 ( 32.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 17/ 65 ( 26.2%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00104.pdb 1 RAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEISD-----------S-N-RWLDVKGTT 47 usage_00275.pdb 1 -LSLSRDTSMEILYMTLTSLKSDDTATYFCARAEAASDSHSR-----PIMFDHW-GQGSL 53 usage_00316.pdb 1 KATLTVDKSSSTAYMQLSSLTSEDSAVYYCASLYYY-GT--S-----YGVLDYW-GQGTS 51 usage_00558.pdb 1 KATLTADRSSSIVYLQLNSLTSEDSAVYSCSRGRSL-----------YYTMDYW-GQGTS 48 usage_01099.pdb 1 RVTITADQSTRTAYMDLRSLRSEDTAVYYCARSPSY------ICSGGTCVFDHW-GQGTL 53 usage_01101.pdb 1 RVTITADQSTRTAYMDLRSLRSEDTAVYYCARSPSY------ICSGGTCVFDHW-GQGTL 53 d s y L sL seD a Y c d w gqGt usage_00104.pdb 48 VTVTT 52 usage_00275.pdb 54 VTVSS 58 usage_00316.pdb 52 VTVS- 55 usage_00558.pdb 49 VTV-- 51 usage_01099.pdb 54 VTV-- 56 usage_01101.pdb 54 VTV-- 56 VTV #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################