################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:43:01 2021 # Report_file: c_1380_164.html ################################################################################################ #==================================== # Aligned_structures: 16 # 1: usage_00534.pdb # 2: usage_00540.pdb # 3: usage_00554.pdb # 4: usage_00710.pdb # 5: usage_00922.pdb # 6: usage_00924.pdb # 7: usage_00926.pdb # 8: usage_00927.pdb # 9: usage_01075.pdb # 10: usage_01670.pdb # 11: usage_02058.pdb # 12: usage_02354.pdb # 13: usage_02355.pdb # 14: usage_02356.pdb # 15: usage_02357.pdb # 16: usage_02358.pdb # # Length: 62 # Identity: 11/ 62 ( 17.7%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 28/ 62 ( 45.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 19/ 62 ( 30.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00534.pdb 1 TPFNHRRIVVYKTAYYTYWLPLVMGLLVSGTLEKVDKKATHKVAMVMGEYFQVQDDVMD- 59 usage_00540.pdb 1 --------VVYKTAYYTYWLPLVMGLLVSGTLEKVDKKATHKVAMVMGEYFQVQDDVMDC 52 usage_00554.pdb 1 --------VKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMDC 52 usage_00710.pdb 1 --------VKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMD- 51 usage_00922.pdb 1 -LSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMD- 58 usage_00924.pdb 1 TLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMD- 59 usage_00926.pdb 1 -LSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMDC 59 usage_00927.pdb 1 TLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMDC 60 usage_01075.pdb 1 -------------AYYTAVAPLRLGALLAGKT--P-PAAYEEGGLRLGTAFQIVDDVLN- 43 usage_01670.pdb 1 -LSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMDC 59 usage_02058.pdb 1 --------VKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMD- 51 usage_02354.pdb 1 --------VKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMD- 51 usage_02355.pdb 1 --------VKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMD- 51 usage_02356.pdb 1 --------VKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMD- 51 usage_02357.pdb 1 --------VKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMD- 51 usage_02358.pdb 1 TLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMDC 60 ayYTy lPLvmGl vs v a GeyFQvqDDVmd usage_00534.pdb -- usage_00540.pdb 53 FT 54 usage_00554.pdb -- usage_00710.pdb -- usage_00922.pdb -- usage_00924.pdb -- usage_00926.pdb 60 F- 60 usage_00927.pdb 61 F- 61 usage_01075.pdb -- usage_01670.pdb 60 FT 61 usage_02058.pdb -- usage_02354.pdb -- usage_02355.pdb -- usage_02356.pdb -- usage_02357.pdb -- usage_02358.pdb -- #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################