################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:40:06 2021 # Report_file: c_1305_56.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00340.pdb # 2: usage_00672.pdb # 3: usage_00673.pdb # 4: usage_00699.pdb # 5: usage_00823.pdb # 6: usage_00824.pdb # 7: usage_00910.pdb # 8: usage_00911.pdb # 9: usage_01054.pdb # 10: usage_01139.pdb # 11: usage_01140.pdb # # Length: 34 # Identity: 1/ 34 ( 2.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 19/ 34 ( 55.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 14/ 34 ( 41.2%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00340.pdb 1 -SGLKAWIDQIVRLGVTFDFVQ------YRPLL- 26 usage_00672.pdb 1 -SGLKAWIDQIVRLGVTFDFVLDNAQ--YRPLL- 30 usage_00673.pdb 1 -SGLKAWIDQIVRLGVTFDFVQ------YRPLL- 26 usage_00699.pdb 1 -SGLKAWIDQIVRLGVTFDFVLDA-Q--YRPLL- 29 usage_00823.pdb 1 -SGLKAWIDQIVRLGVTFDFVQ------FRPLL- 26 usage_00824.pdb 1 -SGLKAWIDQIVRLGVTFDFVLDNGVAQFRPLL- 32 usage_00910.pdb 1 -SGLKAWIDQIVRLGVTFDFVLDNGV--AQYRP- 30 usage_00911.pdb 1 -SGLKAWIDQIVRLGVTFDFVQ------YRPLL- 26 usage_01054.pdb 1 AALRKLGVASDAT-LTDVEPQS------------ 21 usage_01139.pdb 1 -SGLKAWIDQIVRLGVTFDFVLDNVA--QYRPLL 31 usage_01140.pdb 1 -SGLKAWIDQIVRLGVTFDFVA------QYRPLL 27 sglKawidqivr gvtfdfv #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################