################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:12:55 2021 # Report_file: c_1242_171.html ################################################################################################ #==================================== # Aligned_structures: 9 # 1: usage_00786.pdb # 2: usage_00832.pdb # 3: usage_00834.pdb # 4: usage_00835.pdb # 5: usage_00934.pdb # 6: usage_01505.pdb # 7: usage_01554.pdb # 8: usage_02339.pdb # 9: usage_02340.pdb # # Length: 37 # Identity: 0/ 37 ( 0.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 0/ 37 ( 0.0%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 24/ 37 ( 64.9%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00786.pdb 1 ---TRKV----DTYEAFKEAVQ------EGFALA--- 21 usage_00832.pdb 1 R---RIDLRYVKDRKELASTLAPGYVVE--------- 25 usage_00834.pdb 1 R---RIDLRYVKDRKELASTLAPGYVVE--------- 25 usage_00835.pdb 1 R---RIDLRYVKDRKELASTLAPGYVVE--------- 25 usage_00934.pdb 1 -R-RFLI----EGAREIERALQ------AGIEL-E-- 22 usage_01505.pdb 1 R---RIDLRYVKDRKELASTLAPGYVVE--------- 25 usage_01554.pdb 1 -PRLAL-TP--EDPRALAFATG--EGVA-------WE 24 usage_02339.pdb 1 R---RIDLRYVKDRKELASTLAPGYVVE--------- 25 usage_02340.pdb 1 R---RIDLRYVKDRKELASTLAPGYVVE--------- 25 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################