################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:46:34 2021 # Report_file: c_0094_3.html ################################################################################################ #==================================== # Aligned_structures: 8 # 1: usage_00001.pdb # 2: usage_00008.pdb # 3: usage_00013.pdb # 4: usage_00016.pdb # 5: usage_00019.pdb # 6: usage_00021.pdb # 7: usage_00036.pdb # 8: usage_00039.pdb # # Length: 244 # Identity: 42/244 ( 17.2%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 58/244 ( 23.8%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 38/244 ( 15.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 -VGLIVGTGTNVAYIEDSSKVELMD-------GVKEPEVVINTEWGAFGEKGELDCWRTQ 52 usage_00008.pdb 1 EVGLIVGTGSNACYMEEMKNVEMVE-------G-DQGQMCINMEWGAFGDNGCLDDIRTH 52 usage_00013.pdb 1 -MGVIFGTGVNGAYYDVCSDIEKLQGKLSDDIP-PSAPMAINCEYGSFDNEHVVL-PRTK 57 usage_00016.pdb 1 -MGVIFGTGVNGAFYDVVSDIEKLEGKLADDIP-SNSPMAINCEYGSFDNEHLVL-PRTK 57 usage_00019.pdb 1 -VGLIVGTGSNACYMEEMRNVELVE-------G-EEGRMCVNMEWGAFGDNGCLDDFRTE 51 usage_00021.pdb 1 -VGLIVGTGSNACYMEEMRNVELVE-------G-EEGRMCVNMEWGAFGDNGCLDDFRTE 51 usage_00036.pdb 1 -VGLIVGTGSNACYMEEMRNVELVE-------G-EEGRMCVNMEWGAFGDNGCLDDFRTE 51 usage_00039.pdb 1 -VGLIVGTGSNACYMEEMRNVELVE-------G-EEGRMCVNMEWGAFGDNGCLDDFRTE 51 G I GTG N y E m N E G F RT usage_00001.pdb 53 FDKSMDIDSLHPGKQLYEKMVSGMYLGELVRHIIVYLVEQKILFRGDLPERLKVRNSLLT 112 usage_00008.pdb 53 YDRLVNEYSLNAGKQRYEKMISGMYLGEIVRNILIDFTKKGFLFRGQISETLKTRGIFET 112 usage_00013.pdb 58 YDITIDEESPRPGQQTFEKMSSGYYLGEILRLALMDMYKQGFIFKNQDLSKFDKPFVMDT 117 usage_00016.pdb 58 YDVAVDEQSPRPGQQAFEKMTSGYYLGELLRLVLLELNEKGLMLKDQDLSKLKQPYIMDT 117 usage_00019.pdb 52 FDVAVDELSLNPGKQRFEKMISGMYLGEIVRNILIDFTKRGLLFRGRISERLKTRGIFET 111 usage_00021.pdb 52 FDVAVDELSLNPGKQRFEKMISGMYLGEIVRNILIDFTKRGLLFRGRISERLKTRGIFET 111 usage_00036.pdb 52 FDVAVDELSLNPGKQRFEKMISGMYLGEIVRNILIDFTKRGLLFRGRISERLKTRGIFET 111 usage_00039.pdb 52 FDVAVDELSLNPGKQRFEKMISGMYLGEIVRNILIDFTKRGLLFRGRISERLKTRGIFET 111 D de S pG Q EKM SG YLGE R l g f lk T usage_00001.pdb 113 RYLTDVERDPAHLLYNTHYMLTDDLHVPVVEPIDNRIVRYACEMVVKRAAYLAGAGIACI 172 usage_00008.pdb 113 KFLSQIESDRLA-LLQVRAILQQ-LGL-NSTCDDSILVKTVCGVVSRRAAQLCGAGMAAV 169 usage_00013.pdb 118 SYPARIEEDPFENLEDTDDLFQNEFGI-NTTVQERKLIRRLSELIGARAARLSVCGIAAI 176 usage_00016.pdb 118 SYPARIEDDPFENLEDTDDIFQKDFGV-KTTLPERKLIRRLCELIGTRAARLAVCGIAAI 176 usage_00019.pdb 112 KFLSQIESDCLA-LLQVRAILQH-LGL-ESTCDDSIIVKEVCTVVARRAAQLCGAGMAAV 168 usage_00021.pdb 112 KFLSQIESDCLA-LLQVRAILQH-LGL-ESTCDDSIIVKEVCTVVARRAAQLCGAGMAAV 168 usage_00036.pdb 112 KFLSQIESDCLA-LLQVRAILQH-LGL-ESTCDDSIIVKEVCTVVARRAAQLCGAGMAAV 168 usage_00039.pdb 112 KFLSQIESDCLA-LLQVRAILQH-LGL-ESTCDDSIIVKEVCTVVARRAAQLCGAGMAAV 168 iE D L q g t c RAA L G Aa usage_00001.pdb 173 LRRIN-------RSEVTVGVDGSLYKFHPKFCERMTDMVDKLKPK--------NTRFCL- 216 usage_00008.pdb 170 VDKIRENRGLDR-LNVTVGVDGTLYKLHPHFSRIMHQTVKELSPK---------CNVSFL 219 usage_00013.pdb 177 CQKRG-------YKTGHIAADGSVYNRYPGFKEKAANALKDIYGWTQTSLDDYPIKIVP- 228 usage_00016.pdb 177 CQKRG-------YKTGHIAADGSVYNKYPGFKEAAAKGLRDIYGWTGDASKDPITI---- 225 usage_00019.pdb 169 VDRIRENRGLDA-LKVTVGVDGTLYKLHPHFAKVMHETVKDLAPK---------CDVSFL 218 usage_00021.pdb 169 VDRIRENRGLDA-LKVTVGVDGTLYKLHPHFAKVMHETVKDLAPK---------CDVSFL 218 usage_00036.pdb 169 VDRIRENRGLDA-LKVTVGVDGTLYKLHPHFAKVMHETVKDLAPK---------CDVSFL 218 usage_00039.pdb 169 VDRIRENRGLDA-LKVTVGVDGTLYKLHPHFAKVMHETVKDLAPK---------CDVSFL 218 DG Y P F usage_00001.pdb ---- usage_00008.pdb 220 L--- 220 usage_00013.pdb ---- usage_00016.pdb ---- usage_00019.pdb 219 Q--- 219 usage_00021.pdb 219 Q--- 219 usage_00036.pdb 219 Q--- 219 usage_00039.pdb 219 QSED 222 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################