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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Wed Jan 20 23:12:38 2021
# Report_file: c_0872_2.html
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#====================================
# Aligned_structures: 5
#   1: usage_00008.pdb
#   2: usage_00009.pdb
#   3: usage_00018.pdb
#   4: usage_00019.pdb
#   5: usage_00082.pdb
#
# Length:        169
# Identity:       40/169 ( 23.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     79/169 ( 46.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           43/169 ( 25.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00008.pdb         1  AAIAATAMASLL--LLIKIFAWWYTGSVSIL---AALVDSLVDIGASLTNLLVVRYSLQ-   54
usage_00009.pdb         1  AAIAATAMASLL--LLIKIFAWWYTGSVSIL---AALVDSLVDIGASLTNLLVVRYSLQ-   54
usage_00018.pdb         1  -AAIAATAMASLLLLIKIFAWWY--TGSVSILAA--LVDSLVDIGASLTNLLVVRYSLQ-   54
usage_00019.pdb         1  -AAIAATAMASLLLLIKIFAWWY--TGSVSILAA--LVDSLVDIGASLTNLLVVRYSLQ-   54
usage_00082.pdb         1  RASVATALTL-I--TIKLLAWLY--SGSASMLAS--LTDSFADTLASIINFIAIRYAIVP   53
                            A  A      l  l      w              LvDSlvDigASltNllvvRYslq 

usage_00008.pdb        55  -----PADDNHS-FGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVG--  106
usage_00009.pdb        55  -----PADDNHS-FGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVG--  106
usage_00018.pdb        55  -----PAD-DNHSFGHGKAESLAALAQS-MFISGSALFLF-LTGIQHLISPT---PMT--  101
usage_00019.pdb        55  -----PAD-DNHSFGHGKAESLAALAQS-MFISGSALFLF-LTGIQHLISPT---PMT--  101
usage_00082.pdb        54  ADHDH------R-YGHGKAEPLAALAQSA-FIMGSAFLLL-FYGGERLLNPS---PVENA  101
                                        fGHGKAEsLAALAQS                      P         

usage_00008.pdb       107  V-IV-TIV----ALICTIILVSFQRWVVRRTQSQ-AVRADMLHYQSDVM  148
usage_00009.pdb       107  V-IV-TIV----ALICTIILVSFQRWVVRRTQSQ-AVRADMLHYQSDVM  148
usage_00018.pdb       102  DPGV-GVIVTIVALICTIILVSFQRWVVRRTQSQA-VRADMLHYQSDV-  147
usage_00019.pdb       102  DPGV-GVIVTIVALICTIILVSFQRWVVRRTQSQA-VRADMLHYQSDV-  147
usage_00082.pdb       102  ---TLGVVVSVVAIVLTLALVLLQKRALAATNSTV-VEADSLHYKSDLF  146
                              v        AlicTiiLVsfQrwvvrrTqSq  VrADmLHYqSDv 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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