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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Wed Jan 20 23:16:18 2021
# Report_file: c_0615_16.html
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#====================================
# Aligned_structures: 5
#   1: usage_00035.pdb
#   2: usage_00088.pdb
#   3: usage_00089.pdb
#   4: usage_00090.pdb
#   5: usage_00122.pdb
#
# Length:        125
# Identity:      107/125 ( 85.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    107/125 ( 85.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           18/125 ( 14.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00035.pdb         1  TVETQVAELIGTNAIAPFLLTMSFAQRQ---NLSIVNLCDAMVDQP-MAFSLYNMGKHAL   56
usage_00088.pdb         1  --------------IAPFLLTMSFAQRQ-SSNLSIVNLCDAMVDQPCMAFSLYNMGKHAL   45
usage_00089.pdb         1  --------------IAPFLLTMSFAQRQKSSNLSIVNLCDAMVDQPCMAFSLYNMGKHAL   46
usage_00090.pdb         1  --------------IAPFLLTMSFAQRQ--SNLSIVNLCDAMVDQPCMAFSLYNMGKHAL   44
usage_00122.pdb         1  --------------IAPFLLTMSFAQRQK--NLSIVNLCDAMVDQPCMAFSLYNMGKHAL   44
                                         IAPFLLTMSFAQRQ   NLSIVNLCDAMVDQP MAFSLYNMGKHAL

usage_00035.pdb        57  VGLTQSAALELAPYGIRVNGVAPGVSLLPVAMGEEEKDKWRRKVPLGRREASAEQIADAV  116
usage_00088.pdb        46  VGLTQSAALELAPYGIRVNGVAPGVSLLPVAMGEEEKDKWRRKVPLGRREASAEQIADAV  105
usage_00089.pdb        47  VGLTQSAALELAPYGIRVNGVAPGVSLLPVAMGEEEKDKWRRKVPLGRREASAEQIADAV  106
usage_00090.pdb        45  VGLTQSAALELAPYGIRVNGVAPGVSLLPVAMGEEEKDKWRRKVPLGRREASAEQIADAV  104
usage_00122.pdb        45  VGLTQSAALELAPYGIRVNGVAPGVSLLPVAMGEEEKDKWRRKVPLGRREASAEQIADAV  104
                           VGLTQSAALELAPYGIRVNGVAPGVSLLPVAMGEEEKDKWRRKVPLGRREASAEQIADAV

usage_00035.pdb       117  IFLVS  121
usage_00088.pdb       106  IFLVS  110
usage_00089.pdb       107  IFLVS  111
usage_00090.pdb       105  IFLVS  109
usage_00122.pdb       105  IFLVS  109
                           IFLVS


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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