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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Thu Jan 21 23:00:54 2021
# Report_file: c_0545_13.html
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#====================================
# Aligned_structures: 5
#   1: usage_00002.pdb
#   2: usage_00003.pdb
#   3: usage_00835.pdb
#   4: usage_00836.pdb
#   5: usage_00865.pdb
#
# Length:        223
# Identity:       32/223 ( 14.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    104/223 ( 46.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          119/223 ( 53.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00002.pdb         1  -----------------------LLQQMERGLKSA---D-------PRDGTGYTGWAGIA   27
usage_00003.pdb         1  -------------------------------------------------------WAGIA    5
usage_00835.pdb         1  ---------TPEFSQRLTNKIRELLQQMERGLKSA---D-------PRDGTGYTGWAGIA   41
usage_00836.pdb         1  ------------------------------GLKSA---D-------PRDGTGYTGWAGIA   20
usage_00865.pdb         1  SLTKLLSLPYKSFSEK-------LHRYALSIKDKVVWETWERSGKRVRDYNLYTGVLGTA   53
                                                                                  waGiA

usage_00002.pdb        28  VLYLHLYDVFGDPAYLQLAHGYVKQSLNCL--TKRSITFLCGDAGPLAVAAVLYHKMNNE   85
usage_00003.pdb         6  VLYLHLYDVFGDPAYLQLAHGYVKQSLNCL--TKRSITFLCGDAGPLAVAAVLYHKMNNE   63
usage_00835.pdb        42  VLYLHLYDVFGDPAYLQLAHGYVKQSLNCL--TKRSITFLCGDAGPLAVAAVLYHKMNNE   99
usage_00836.pdb        21  VLYLHLYDVFGDPAYLQLAHGYVKQSLNCL--TKRSITFLCGDAGPLAVAAVLYHKMNNE   78
usage_00865.pdb        54  YLLFKSYQVTRNEDDLKLCLENVEACDVASRDS-ERVTFICGYAGVCALGAVAAKCLGDD  112
                           vLylhlYdVfgdpayLqLahgyVkqslncl  t rsiTFlCGdAGplAvaAVlyhkmnne

usage_00002.pdb        86  KQAEDCITRLIHLNKIDPHAPNEMLYGRIGYIYALLFVNKNFGVEKIPQSHIQQICETIL  145
usage_00003.pdb        64  KQAEDCITRLIHLNKIDPHAPNEMLYGRIGYIYALLFVNKNFGVEKIPQSHIQQICETIL  123
usage_00835.pdb       100  KQAEDCITRLIHLNKIDPHAPNEMLYGRIGYIYALLFVNKNFGVEKIPQSHIQQICETIL  159
usage_00836.pdb        79  KQAEDCITRLIHLNKIDPHAPNEMLYGRIGYIYALLFVNKNFGVEKIPQSHIQQICETIL  138
usage_00865.pdb       113  QLYDRYLARFRGIR-LPSDLPYELLYGRAGYLWACLFLNKHIG-----------------  154
                           kqaedcitRlihln idphaPnEmLYGRiGYiyAlLFvNKnfG                 

usage_00002.pdb       146  TSGENLARKRN--------------------------------  156
usage_00003.pdb       124  TSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYLMQ  166
usage_00835.pdb       160  TSGENLARKR---------------------------------  169
usage_00836.pdb       139  TSGENLARKRN--------------------------------  149
usage_00865.pdb            -------------------------------------------     
                                                                      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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