################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:07:45 2021 # Report_file: c_0421_13.html ################################################################################################ #==================================== # Aligned_structures: 9 # 1: usage_00001.pdb # 2: usage_00022.pdb # 3: usage_00023.pdb # 4: usage_00089.pdb # 5: usage_00103.pdb # 6: usage_00104.pdb # 7: usage_00105.pdb # 8: usage_00106.pdb # 9: usage_00107.pdb # # Length: 91 # Identity: 9/ 91 ( 9.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 27/ 91 ( 29.7%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 17/ 91 ( 18.7%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 -LVIYLALDGDAVVGLIRLVGDGF-------SSVFVQDLIVLPSYQRQGIGSSL-KEALG 51 usage_00022.pdb 1 TFIALAAFDRGTAIGGLAAYVL--PKFEQARSEIYIYDLAVASSHRRLGVATALISHLKR 58 usage_00023.pdb 1 TFIALAAFDRGTAIGGLAAYVL--PKFEQARSEIYIYDLAVASSHRRLGVATALISHLKR 58 usage_00089.pdb 1 NFYVFVALLENKIVGGLTSYVL--EQYYSEKPLAYIYDLAVDTNWQRQGIGKKLITATNQ 58 usage_00103.pdb 1 -FIALAALEYGEIVGGLAAYEL--KKFEQERSEIYIYDLAVAKAHRRRGIATALIEKLKE 57 usage_00104.pdb 1 -FIALAALEYGEIVGGLAAYEL--KKFEQERSEIYIYDLAVAKAHRRRGIATALIEKLKE 57 usage_00105.pdb 1 -FIALAALEYGEIVGGLAAYEL--KKFEQERSEIYIYDLAVAKAHRRRGIATALIEKLKE 57 usage_00106.pdb 1 -FIALAALEYGEIVGGLAAYEL--KKFEQERSEIYIYDLAVAKAHRRRGIATALIEKLKE 57 usage_00107.pdb 1 -FIALAALEYGEIVGGLAAYEL--KKFEQERSEIYIYDLAVAKAHRRRGIATALIEKLKE 57 f A Ggl y l s yiyDLaV R G L usage_00001.pdb 52 NFK--EAYQVQLATEE-T--EKNVGFYRSG- 76 usage_00022.pdb 59 VAVELGAYVIYVQADYGD--DPAVALYTKL- 86 usage_00023.pdb 59 VAVELGAYVIYVQADYGD--DPAVALYTKL- 86 usage_00089.pdb 59 FYTEKGFEEVFVQADKVD--DYALDFYRST- 86 usage_00103.pdb 58 LGAARGAYVIFVQADTAIEDEPAIALYSKL- 87 usage_00104.pdb 58 LGAARGAYVIFVQADTAIEDEPAIALYSKL- 87 usage_00105.pdb 58 LGAARGAYVIFVQADTAIEDEPAIALYSKLG 88 usage_00106.pdb 58 LGAARGAYVIFVQADTAIEDEPAIALYSKL- 87 usage_00107.pdb 58 LGAARGAYVIFVQADTAIEDEPAIALYSKLG 88 gay vqad a Y #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################