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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Wed Jan 20 23:48:52 2021
# Report_file: c_0539_2.html
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#====================================
# Aligned_structures: 8
#   1: usage_00002.pdb
#   2: usage_00004.pdb
#   3: usage_00005.pdb
#   4: usage_00050.pdb
#   5: usage_00059.pdb
#   6: usage_00079.pdb
#   7: usage_00080.pdb
#   8: usage_00081.pdb
#
# Length:        159
# Identity:       55/159 ( 34.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    138/159 ( 86.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           20/159 ( 12.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00002.pdb         1  --------------------GAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKL   40
usage_00004.pdb         1  -------------------VGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKL   41
usage_00005.pdb         1  -------------------VGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKL   41
usage_00050.pdb         1  PAGQGAKVAFGAFDGSAVLVGAMGVGLMRAAFDAALKFAKEDNRGGAVPLLERQAFADLL   60
usage_00059.pdb         1  -------------------VGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKL   41
usage_00079.pdb         1  --------------------GAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKL   40
usage_00080.pdb         1  -------------------VGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKL   41
usage_00081.pdb         1  -------------------VGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKL   41
                                               GAMaiGtaRAAFeeALvFAKsDtRGGskhiiEhQsvADkL

usage_00002.pdb        41  IDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMK  100
usage_00004.pdb        42  IDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMK  101
usage_00005.pdb        42  IDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMK  101
usage_00050.pdb        61  SGVKIQTEAARALTWKAAHAMENGPGDYDARRELALAAKVFCSEAAVKACTDVINAVGIS  120
usage_00059.pdb        42  IDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMK  101
usage_00079.pdb        41  IDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMK  100
usage_00080.pdb        42  IDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMK  101
usage_00081.pdb        42  IDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMK  101
                           idcKIrlEtsRlLvWKAvttlEdealewkvklEmAmqtKiyttdvAVecviDamkAVGmk

usage_00002.pdb       101  SYAKDMSFPRLLNEVMCYPLFNGGNIGLRRRQMQRVMAL  139
usage_00004.pdb       102  SYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMAL  140
usage_00005.pdb       102  SYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMAL  140
usage_00050.pdb       121  AYDLQRPFSDLLNTAVVLPIFDGGNVGIRRRHLQQLMLK  159
usage_00059.pdb       102  SYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMAL  140
usage_00079.pdb       101  SYAKDMSFPRLLNEVMCYPLFDGGNIGLKRRQMQRVMAL  139
usage_00080.pdb       102  SYAKDMSFPRLLNEVMCYPLFDGGNIGLKRRQMQRVMAL  140
usage_00081.pdb       102  SYAKDMSFPRLLNEVMCYPLFDGGNIGLKRRQMQRVMAL  140
                           sYakdmsFprLLNevmcyPlFdGGNiGl RRqmQrvMal


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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