################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:25:04 2021 # Report_file: c_0741_13.html ################################################################################################ #==================================== # Aligned_structures: 10 # 1: usage_00028.pdb # 2: usage_00029.pdb # 3: usage_00030.pdb # 4: usage_00056.pdb # 5: usage_00057.pdb # 6: usage_00067.pdb # 7: usage_00094.pdb # 8: usage_00216.pdb # 9: usage_00328.pdb # 10: usage_00378.pdb # # Length: 87 # Identity: 13/ 87 ( 14.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 23/ 87 ( 26.4%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 34/ 87 ( 39.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00028.pdb 1 EYRPLTLNALLAV------------A-QGVPVKVLDCDTISQAKEKMLDQLYKG-----V 42 usage_00029.pdb 1 EYRPLTLNALLAV------------A-QGVPVKVLDCDTISQAKEKMLDQLYKG-----V 42 usage_00030.pdb 1 EYRPLTLNALLAV------------A-QGVPVKVLDCDTISQAKEKMLDQLYKG-----V 42 usage_00056.pdb 1 --RPLTLNALLA-------------A-QGVPVKVLDCDTISQAKEK-LDQLYKG-----V 38 usage_00057.pdb 1 --RPLTLNALLAV-----G-----PA-QGVPVKVLDCDTISQAKEK-LDQLYKG-----V 41 usage_00067.pdb 1 --RPLTLNALLAV-----GPGAGE-A-QGVPVKVLDCDTISQAKEKMLDQLYKG-----V 46 usage_00094.pdb 1 --RPLTLNALLA-------------A-QGVPVKVLDCDTISQAKEKMLDQLYKG-----V 39 usage_00216.pdb 1 --GTVALNVVFEKIPENESAD----VCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPY- 53 usage_00328.pdb 1 --KTLILNCVNPD-----NEN----S-PEIPVKVLNCDTITQVKEKILDAVYK------- 41 usage_00378.pdb 1 ---PLTVSVIVQD------------I-DAIPVKVLNCDTISQVKEKIIDQVYRT-----Q 39 l ln pVkVL CDTI Q KEK d y usage_00028.pdb 43 PLTQRPDPRTLDVEWRSGVAGHLILSD 69 usage_00029.pdb 43 PLTQRPDPRTLDVEWRSGVAGHLILSD 69 usage_00030.pdb 43 PLTQRPDPRTLDVEWRSGVAGHLILSD 69 usage_00056.pdb 39 PLTQRPDPRTLDVEWRSGVAGHLI--- 62 usage_00057.pdb 42 PLTQRPDPRTLDVEWRSGVAGHLILSD 68 usage_00067.pdb 47 PLTQRPDPRTLDVEWRSGVAGHLILSD 73 usage_00094.pdb 40 PLTQRPDPRTLDVEWRSGVAGHLILSD 66 usage_00216.pdb 54 ----GLQLNEIGLELQMGTRQKELLD- 75 usage_00328.pdb 42 ---QRPRAVDMDLEWRQGRIARVVLQD 65 usage_00378.pdb 40 PCSCWPKPDSVVLEWRPGST--QILSD 64 p Ewr G #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################