################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:03:27 2021 # Report_file: c_0054_31.html ################################################################################################ #==================================== # Aligned_structures: 4 # 1: usage_00040.pdb # 2: usage_00112.pdb # 3: usage_00113.pdb # 4: usage_00233.pdb # # Length: 258 # Identity: 52/258 ( 20.2%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 221/258 ( 85.7%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 37/258 ( 14.3%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00040.pdb 1 ADNLRQVVSTYWRRFCQTKSRQEALKWENVIITSGVSQAIVLALTALCNEGDNILVCAPS 60 usage_00112.pdb 1 -PALREALAEEFA-----------VEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPF 48 usage_00113.pdb 1 -PALREALAEEFA-----------VEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPF 48 usage_00233.pdb 1 LPALREALAEEFA-----------VEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPF 49 paLRealaeefa vepEsVvvTSGateAlyvlLqsLvgpGDevvVlePf usage_00040.pdb 61 FPHYKSVCDSYGIECRYYYLDPS-KSWECDLRAAAGMVDSHTKAFVIINPSNPCGSNFSR 119 usage_00112.pdb 49 FDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGE 108 usage_00113.pdb 49 FDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGE 108 usage_00233.pdb 50 FDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGE 109 FdvYlpdaflaGakaRlvrLDlt egfrlDLsAlekaltprTrAlllntPmNPtGlvFge usage_00040.pdb 120 AHVSDIIDFCQQHQIPLISDEIYAEMVLNNGI-FTSVADFDTN-VPRLILGGTA-YQVCP 176 usage_00112.pdb 109 RELEAIARLARAHDLFLISDEVYDELYY--GERPRRLREFA--PERTFTVGSAGKRLEAT 164 usage_00113.pdb 109 RELEAIARLARAHDLFLISDEVYDELYY--GERPRRLREFA--PERTFTVGSAGKRLEAT 164 usage_00233.pdb 110 RELEAIARLARAHDLFLISDEVYDELYY--GERPRRLREFA--PERTFTVGSAGKRLEAT 165 releaIarlaraHdlfLISDEvYdElyy Ge prrlreFa ertftvGsag rleat usage_00040.pdb 177 GWRVGWSILIDPMNVAGDWAVGMER-LTQLIAGVNSICQEAIARTLLKCPT--ECTEHIV 233 usage_00112.pdb 165 GYRVGWIVGP------KEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLAR-REGFYEALR 217 usage_00113.pdb 165 GYRVGWIVGP------KEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLAR-REGFYEALR 217 usage_00233.pdb 166 GYRVGWIVGP------KEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLAR-REGFYEALR 218 GyRVGWivgp kefmprlag rqwtsfsaptplQagvAeaLklar gfyEalr usage_00040.pdb 234 TQLEAGAKVYA------- 244 usage_00112.pdb 218 EGYRRRRDLLAGGLRAM- 234 usage_00113.pdb 218 EGYRRRRDLLAGGLRAMG 235 usage_00233.pdb 219 EGYRRRRDLLAGGLRAMG 236 egyrrrrdllA #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################