################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:40:41 2021 # Report_file: c_0463_70.html ################################################################################################ #==================================== # Aligned_structures: 7 # 1: usage_00001.pdb # 2: usage_00006.pdb # 3: usage_00113.pdb # 4: usage_00153.pdb # 5: usage_00154.pdb # 6: usage_00155.pdb # 7: usage_00669.pdb # # Length: 95 # Identity: 5/ 95 ( 5.3%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 15/ 95 ( 15.8%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 33/ 95 ( 34.7%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 --KIALITGITGQDGSYLTEFLLGKGYEVHGLIRR----SSNFNTQRINHIYIK------ 48 usage_00006.pdb 1 --KHIHIIGIGGTF-GGLAAIAKEAGFEVSGCDAK---Y---PPSTQLEAL--------- 42 usage_00113.pdb 1 --KTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQ---KKVSHLLELQE------- 48 usage_00153.pdb 1 --RSALVTGITGQDGAYLAKLLLEKGYRVHGLVAR----RSSDTRWRLRELG-------- 46 usage_00154.pdb 1 --RSALVTGITGQDGAYLAKLLLEKGYRVHGLVAR----RSSDTRWRLRELG-------- 46 usage_00155.pdb 1 --RSALVTGITGQDGAYLAKLLLEKGYRVHGLVAR----RSSDTRWRLRELG-------- 46 usage_00669.pdb 1 GRNVALITGITGQDGSYLAEFLLEKGYEVHGIVRR----SSSFNTGRIEHLY--KNPQAH 54 a GitG L ll kGy V g l usage_00001.pdb 49 --A-LMKLHYADLTDASSLRRWIDVIKPDEVYN-- 78 usage_00006.pdb 43 ----GIDVYEGF------DAAQLDEFKADVYVIGN 67 usage_00113.pdb 49 --LGDLKIFRADLTDELSFEAPIA--GCDFVFHV- 78 usage_00153.pdb 47 IEG-DIQYEDGDMADACSVQRAVIKAQPQEVYN-- 78 usage_00154.pdb 47 IEG-DIQYEDGDMADACSVQRAVIKAQPQEVYN-- 78 usage_00155.pdb 47 IEG-DIQYEDGDMADACSVQRAVIKAQPQEVYN-- 78 usage_00669.pdb 55 IEG-NMKLHYGDLTDSTCLVKIINEVKPTEIYN-- 86 d #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################