################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:10:41 2021 # Report_file: c_1135_56.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00016.pdb # 2: usage_00185.pdb # 3: usage_00186.pdb # 4: usage_00187.pdb # 5: usage_00188.pdb # 6: usage_00314.pdb # 7: usage_00824.pdb # 8: usage_00876.pdb # 9: usage_00961.pdb # 10: usage_01067.pdb # 11: usage_01359.pdb # # Length: 108 # Identity: 42/108 ( 38.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 54/108 ( 50.0%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 18/108 ( 16.7%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00016.pdb 1 -DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWR 59 usage_00185.pdb 1 -DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWR 59 usage_00186.pdb 1 -DKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSSWR 59 usage_00187.pdb 1 --REQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWR 58 usage_00188.pdb 1 GDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWR 60 usage_00314.pdb 1 -DREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWR 59 usage_00824.pdb 1 --KNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWR 58 usage_00876.pdb 1 --KNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWR 58 usage_00961.pdb 1 -ERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWR 59 usage_01067.pdb 1 -ERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELS-EERNLLSVAYKNVVGGQRAAWR 58 usage_01359.pdb 1 -DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWR 59 L q A LAEQAERY dMa MK e Ls E RNLLSVAYKNVvG R WR usage_00016.pdb 60 VVSSIEQK-------EKKQQMAREYREKIETELRDICNDVLSLLEKFL 100 usage_00185.pdb 60 VVSSIEQKTE--GA-EKKQQMAREYREKIETELRDICNDVLSLLEKFL 104 usage_00186.pdb 60 VISSIEQK-------KK-QQMGKEYREKIEAELQDICNDVLELL---- 95 usage_00187.pdb 59 VISSIEQKTMADGN-EKKLEKVKAYREKIEKELETVCNDVLSLLDKFL 105 usage_00188.pdb 61 VISSIEQKTMADGN-EKKLEKVKAYREKIEKELETVCNDVLSLLD--- 104 usage_00314.pdb 60 IISSIEQKEENKGG-EDKLKMIREYRQMVETELKLICCDILDVLDKH- 105 usage_00824.pdb 59 VVSSIEQKTE--GA-EKKQQMAREYREKIETELRDICNDVLSLLEKFL 103 usage_00876.pdb 59 VVSSIEQKT----E-EKKQQMAREYREKIETELRDICNDVLSLLEKFL 101 usage_00961.pdb 60 VLSSIE-Q----------GPEVREYREKVETELQGVCDTVLGLLDSH- 95 usage_01067.pdb 59 VLSSIEQKS-----N---GPEVREYREKVETELQGVCDTVLGLLDSH- 97 usage_01359.pdb 60 VVSSIEQKT----A-EKKQQMAREYREKIETELRDICNDVLSLLEKFL 102 v SSIE k YRek E EL C vL lL #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################