################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:29:18 2021 # Report_file: c_0688_33.html ################################################################################################ #==================================== # Aligned_structures: 6 # 1: usage_00103.pdb # 2: usage_00176.pdb # 3: usage_00178.pdb # 4: usage_00179.pdb # 5: usage_00192.pdb # 6: usage_00193.pdb # # Length: 62 # Identity: 3/ 62 ( 4.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 15/ 62 ( 24.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 28/ 62 ( 45.2%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00103.pdb 1 ----QKLNLHLT-----ITATGQKYRILAS-----K-IVDFNIYSNN--FNNLVKLEQSL 43 usage_00176.pdb 1 ----KAKQQVVSGIMHHLTVEV--------IEG-GKKKVYEAKVWVQAWLNSKKLHEFS- 46 usage_00178.pdb 1 ----NVKEQVVAGIMYYITLAA--------TDDAGKKKIYKAKIWVKEWEDFKKVVEFKL 48 usage_00179.pdb 1 VENLNVKEQVVAGIMYYITLAA--------TDDAGKKKIYKAKIWVKEWEDFKKVVEFKL 52 usage_00192.pdb 1 VENLNVKKQVVAGMLYYITFAA--------TDG-GKKKIYETKIWVKVWENFKKVVEFKL 51 usage_00193.pdb 1 VENLNVKEQLVAGMLYYITLVA--------IDA-GKKKIYEAKIWVKEWENFKKVIEFKL 51 k q v iT K k y k wv kk Ef usage_00103.pdb 44 G- 44 usage_00176.pdb -- usage_00178.pdb 49 V- 49 usage_00179.pdb 53 V- 53 usage_00192.pdb -- usage_00193.pdb 52 IG 53 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################