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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Thu Jan 21 00:00:02 2021
# Report_file: c_1396_232.html
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#====================================
# Aligned_structures: 8
#   1: usage_00794.pdb
#   2: usage_00795.pdb
#   3: usage_00796.pdb
#   4: usage_00859.pdb
#   5: usage_01025.pdb
#   6: usage_01026.pdb
#   7: usage_01027.pdb
#   8: usage_01028.pdb
#
# Length:        117
# Identity:        4/117 (  3.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     53/117 ( 45.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           47/117 ( 40.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00794.pdb         1  -TLGTDAQWVVFAVMALAAIVFSIAVQF---------------RPLPLRLTYYVNIAICT   44
usage_00795.pdb         1  -TLGTDAQWVVFAVMALAAIVFSIAVQF---------------RPLPLRLTYYVNIAICT   44
usage_00796.pdb         1  -TLGTDAQWVVFAVMALAAIVFSIAVQF---------------RPLPLRLTYYVNIAICT   44
usage_00859.pdb         1  -----DASDYTGVSFWLVTAALLASTVFFFVERDRVSAKWKTS----LTVSGLVTGIAFW   51
usage_01025.pdb         1  TETGMIAQWIVFAIMAAAAIAFGVAVHF---------------RP--LKSAYYINIAICT   43
usage_01026.pdb         1  TETGMIAQWIVFAIMAAAAIAFGVAVHF---------------RP--LKSAYYINIAICT   43
usage_01027.pdb         1  TETGMIAQWIVFAIMAAAAIAFGVAVHF---------------RP--LKSAYYINIAICT   43
usage_01028.pdb         1  TETGMIAQWIVFAIMAAAAIAFGVAVHF---------------RP--LKSAYYINIAICT   43
                                 Aqw vfa ma aai f  av F                   L   yy niaict

usage_00794.pdb        45  IAATAYYAMAVNG--GDNKPTAGTGADERQVIYARYIDWVFTTPLLLLDLVLLT---   96
usage_00795.pdb        45  IAATAYYAMAVNG--GDNKPTAGTGADERQVIYARYIDWVFTTPLLLLDLVLLT---   96
usage_00796.pdb        45  IAATAYYAMAVNG--GDNKPTAGTGADERQVIYARYIDWVFTTPLLLLDLVLLT---   96
usage_00859.pdb        52  HYMYMRGVWIETGDS------------------PTVFRYIDWLLTVPLLICEFYLIL   90
usage_01025.pdb        44  IAATAYYAMAVNY--QDLTM-NG----ERQVVYARYIDWVLTTPLLLLDLIVMT---   90
usage_01026.pdb        44  IAATAYYAMAVNY--QDLTM-NG----ERQVVYARYIDWVLTTPLLLLDLIVMT---   90
usage_01027.pdb        44  IAATAYYAMAVNY--QDLTM-NG----ERQVVYARYIDWVLTTPLLLLDLIVMT---   90
usage_01028.pdb        44  IAATAYYAMAVNY--QDLTM-NG----ERQVVYARYIDWVLTTPLLLLDLIVMT---   90
                           iaatayyamavn                     aryidwv ttplllLdl   t   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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