################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:16:51 2021 # Report_file: c_0787_20.html ################################################################################################ #==================================== # Aligned_structures: 5 # 1: usage_00019.pdb # 2: usage_00392.pdb # 3: usage_00615.pdb # 4: usage_00616.pdb # 5: usage_01021.pdb # # Length: 73 # Identity: 5/ 73 ( 6.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 46/ 73 ( 63.0%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 25/ 73 ( 34.2%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00019.pdb 1 EKLVLE-GQDHLGDIH-LLSELAR-----PKTAIVTLVGEAHLA-FFKDRSEIAKGKQIA 52 usage_00392.pdb 1 VVV----VKKGASSFFGSTLSSLLAGTNT---DTVVVTGA-TTSG---AVRATVVDAVQ- 48 usage_00615.pdb 1 EKLVLEMGQDHLGDIH-LLSELAR-----PKTAIVTLVGEAHLA-FFKDRSEIAKGKMQI 53 usage_00616.pdb 1 EKLVLEMGQDHLGDIH-LLSELAR-----PKTAIVTLVGEAHLA-FFKDRSEIAKGKMQI 53 usage_01021.pdb 1 EKLVLE-GQDHLGDIH-LLSELAR-----PKTAIVTLVGEAHLA-FFKDRSEIAKGKQIA 52 ekl gqdhlgdih llselar aiVtlvGe hla drseiakgk usage_00019.pdb 53 DG--ASGSLLLAP 63 usage_00392.pdb 49 -----SGFKVLVP 56 usage_00615.pdb 54 ADGMASGSLLLA- 65 usage_00616.pdb 54 ADGMASGSLLLAP 66 usage_01021.pdb 53 DG--ASGSLLLAP 63 SGsllLa #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################