################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:28:38 2021 # Report_file: c_0020_1.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00001.pdb # 2: usage_00009.pdb # 3: usage_00010.pdb # 4: usage_00069.pdb # 5: usage_00096.pdb # 6: usage_00097.pdb # 7: usage_00098.pdb # 8: usage_00099.pdb # 9: usage_00100.pdb # 10: usage_00101.pdb # 11: usage_00110.pdb # # Length: 242 # Identity: 11/242 ( 4.5%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 27/242 ( 11.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 74/242 ( 30.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 --QLTELG---NGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGY--G 53 usage_00009.pdb 1 YIITEK-KGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGG--E 57 usage_00010.pdb 1 GLTLTI-D---GEVARITLSRPHRRNA-TGR-WTELARIGHTL--PQAVRIVVITGE--G 50 usage_00069.pdb 1 YIITEK-KGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGG--E 57 usage_00096.pdb 1 SIAARQ-E---GAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGR--G 54 usage_00097.pdb 1 SIAARQ-E---GAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGR--G 54 usage_00098.pdb 1 SIAARQ-E---GAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGR--G 54 usage_00099.pdb 1 SIAARQ-E---GAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGR--G 54 usage_00100.pdb 1 SIAARQ-E---GAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGR--G 54 usage_00101.pdb 1 --NVVT-I---NKVAVIEFNYGRKLNALSKVFIDDLMQALSDLN-RPEIRCIILRAPSGS 53 usage_00110.pdb 1 -LSVRV-E---DHIAVATLNHAPA-NA-SSQ-VHDVTELIDQVEKDDNIRVVVIHGE--G 50 v i Na g usage_00001.pdb 54 NYFSSGASKEF------------LIRKTR-----GEVEV--------L-DLSGLILDCEI 87 usage_00009.pdb 58 KAFAAGADIKE------------MQNRT-F-QDCY----SG----K-FLSHWDHITRIKK 94 usage_00010.pdb 51 PTFSSGIDLDFQAGKVDGEPTPS------T-AALD----QVI---ASYQEGFLWLRRADI 96 usage_00069.pdb 58 KAFAAGADIKE------------MQNRT-F-QDCY----SG------L-SHWDHITRIKK 92 usage_00096.pdb 55 RAFAAGADIQE------------MAKDD-P-IRLE----WL----N-QFADWDRLSIVKT 91 usage_00097.pdb 55 RAFAAGADIQE------------MAKDD-P-IRLE----WL----N-QFADWDRLSIVKT 91 usage_00098.pdb 55 RAFAAGADIQE------------MAKDD-P-IRLE----WL----N-QFADWDRLSIVKT 91 usage_00099.pdb 55 RAFAAGADIQE------------MAKDD-P-IRLE----WL----N-QFADWDRLSIVKT 91 usage_00100.pdb 55 RAFAAGADIQE------------MAKDD-P-IRLE----WL----N-QFADWDRLSIVKT 91 usage_00101.pdb 54 KVFSAGHDIHE------------LP--S-G-GRD-----PL-SYDDPLRQITRMIQKFPK 91 usage_00110.pdb 51 RFFSAGADIKE------------FTSVT-EAKQAT----ELA---QLGQVTFERVEKCSK 90 F G d usage_00001.pdb 88 PIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGFTPVGATSLILREKLGSELA 147 usage_00009.pdb 95 PVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLA 154 usage_00010.pdb 97 VSIAAVRGHAIGAGFQLALSCDIRILSDTAQLC-KEPALGLVPDLTGTQPLVELVGVNRA 155 usage_00069.pdb 93 PVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLA 152 usage_00096.pdb 92 PMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRA 151 usage_00097.pdb 92 PMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRA 151 usage_00098.pdb 92 PMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRA 151 usage_00099.pdb 92 PMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRA 151 usage_00100.pdb 92 PMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRA 151 usage_00101.pdb 92 PIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIV 151 usage_00110.pdb 91 PVIAAIHGAALGGGLEFAS-C-HRFATESAKLGLPELTLGLIPGFAGTQRLPRYVGKAKA 148 p Iaa G Ggg lG p g L G a usage_00001.pdb 148 QEMIYTGENYRGKELAERGIPFPVVSRQDVLNYAQQLGQKIAKSPRLSLVALKQHLSA-- 205 usage_00009.pdb 155 MEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIAN----------------- 197 usage_00010.pdb 156 IELCLTARTIDAAEAAQLRLAERVVADAELDAAVDALVAQLLAVPAAAARATKELLLQAG 215 usage_00069.pdb 153 MEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAKESVNAAF 212 usage_00096.pdb 152 LEWLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRLAGRLAEQPPLALRLIKEAVQKA- 210 usage_00097.pdb 152 LEWLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRLAGRLAEQPPLALRLIKEAVQKAV 211 usage_00098.pdb 152 LEWLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRLAGRLAEQPPLALRLIKEAVQKA- 210 usage_00099.pdb 152 LEWLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRLAGRLAEQPPLALRLIKEAVQKAV 211 usage_00100.pdb 152 LEWLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRLAGRLAEQPPLALRLIKEAVQKAV 211 usage_00101.pdb 152 KELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEELRVLG 211 usage_00110.pdb 149 CE--LTSTPITGAEALKWGLVNGVFAEETFLDDTLKVAKQIAGKSPATARAVLELLQTTK 206 E T a g usage_00001.pdb -- usage_00009.pdb -- usage_00010.pdb 216 RN 217 usage_00069.pdb 213 EM 214 usage_00096.pdb -- usage_00097.pdb -- usage_00098.pdb -- usage_00099.pdb -- usage_00100.pdb 212 DY 213 usage_00101.pdb 212 EA 213 usage_00110.pdb 207 S- 207 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################