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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Wed Jan 20 23:44:25 2021
# Report_file: c_1405_10.html
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#====================================
# Aligned_structures: 7
#   1: usage_00097.pdb
#   2: usage_00978.pdb
#   3: usage_01001.pdb
#   4: usage_01002.pdb
#   5: usage_01003.pdb
#   6: usage_01004.pdb
#   7: usage_01143.pdb
#
# Length:         69
# Identity:       27/ 69 ( 39.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     30/ 69 ( 43.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           19/ 69 ( 27.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00097.pdb         1  -ELILQLLQLEPEEDQVRARIVGCLQEP-------AKS---DQP-APFSL-LRMADQTFI   47
usage_00978.pdb         1  PHLILELLKCEPDEPQVQAKIMAYLQQEQAN-R-S------KL--STFGLMCKMADQTLF   50
usage_01001.pdb         1  PHLILELLKCEPDEPQVQAKIMAYLQQEQANRSK-----HEKL--STFGLMCKMADQTLF   53
usage_01002.pdb         1  PHLILELLKCEPDEPQVQAKIMAYLQQEQANRSK-----HEKL--STFGLMCKMADQTLF   53
usage_01003.pdb         1  PHLILELLKCEPDEPQVQAKIMAYLQQEQANRSK-----HEKL--STFGLMCKMADQTLF   53
usage_01004.pdb         1  PHLILELLKCEPDEPQVQAKIMAYLQQEQANRSK-----HEKL--STFGLMCKMADQTLF   53
usage_01143.pdb         1  PELILQLLQLEPDEDQVRARILGSLQEP-------TKSRP-DQ-PAAFGLLCRMADQTFI   51
                             LIL LL  EPdE QV A I   LQ                     FgL c MADQT  

usage_00097.pdb        48  SIVDWAR--   54
usage_00978.pdb        51  SIVEWARSS   59
usage_01001.pdb        54  SIVEWARSS   62
usage_01002.pdb        54  SIVEWARS-   61
usage_01003.pdb        54  SIVEWARSS   62
usage_01004.pdb        54  SIVEWARSS   62
usage_01143.pdb        52  SIVDWAR--   58
                           SIV WAR  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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