################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:24:13 2021 # Report_file: c_0583_22.html ################################################################################################ #==================================== # Aligned_structures: 10 # 1: usage_00004.pdb # 2: usage_00005.pdb # 3: usage_00072.pdb # 4: usage_00073.pdb # 5: usage_00098.pdb # 6: usage_00103.pdb # 7: usage_00108.pdb # 8: usage_00140.pdb # 9: usage_00146.pdb # 10: usage_00258.pdb # # Length: 76 # Identity: 4/ 76 ( 5.3%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 14/ 76 ( 18.4%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 10/ 76 ( 13.2%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00004.pdb 1 LTQETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDP-LLTSPETLRG 59 usage_00005.pdb 1 --QETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDP-LLTSPETLRG 57 usage_00072.pdb 1 --VTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDP-SCTSPVALQR 57 usage_00073.pdb 1 TCSTTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNP-AVISPEELRA 59 usage_00098.pdb 1 --REVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDN-E-VTADSIKE 56 usage_00103.pdb 1 --VVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQP-HLISVEEMKK 57 usage_00108.pdb 1 -DSTATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSV-TPESLRK 58 usage_00140.pdb 1 GVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDP-KLQTPKTLQE 59 usage_00146.pdb 1 --NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDP-KLQTPKTLQE 57 usage_00258.pdb 1 -LQKSYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDS-LLISPFQIAK 58 Gm C sc Ie gV vsl y usage_00004.pdb 60 AIEDMG---FDATLSD 72 usage_00005.pdb 58 AIEDMG---FDATLSD 70 usage_00072.pdb 58 AIEALPPGNFKVSL-- 71 usage_00073.pdb 60 AIEDMG---FEASV-- 70 usage_00098.pdb 57 IIEDCG---FDCEILR 69 usage_00103.pdb 58 QIEAMG---FPAFVKK 70 usage_00108.pdb 59 AIEAVSPGLYRVSI-- 72 usage_00140.pdb 60 AIDDMG---FDAVI-- 70 usage_00146.pdb 58 AIDDMG---FDAVIHN 70 usage_00258.pdb 59 ALNEAR---LEANV-- 69 i #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################