################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:30:30 2021 # Report_file: c_1016_79.html ################################################################################################ #==================================== # Aligned_structures: 6 # 1: usage_00086.pdb # 2: usage_00130.pdb # 3: usage_00133.pdb # 4: usage_00257.pdb # 5: usage_00375.pdb # 6: usage_00376.pdb # # Length: 74 # Identity: 9/ 74 ( 12.2%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 11/ 74 ( 14.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 23/ 74 ( 31.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00086.pdb 1 LSKLAVTSYKDIESLMSEGNKSR-----------------SSRSHAVFKITLTHTLY--- 40 usage_00130.pdb 1 ITEETVLDPNHLRHLMHTAKMNRE---------------RSSRSHAVTKLELIGRHAEKQ 45 usage_00133.pdb 1 VTSCKLESEEMVEIILKKANKLR-S-T------------HSSRSHSIFIIHLSGSNAKTG 46 usage_00257.pdb 1 ATERFVSSPDEVMDTIDEGKSNR-H--VAVTNM----NEHSSRSHSIFLINVKQENTQTE 53 usage_00375.pdb 1 VTVVSISTYEELKTIIQRGSEQR-HT-------LMNE--QSSRSHLIVSVIIESTNLQTQ 50 usage_00376.pdb 1 VTVVSISTYEELKTIIQRGSEQR-H-T---TGTLMNE--QSSRSHLIVSVIIESTNLQTQ 53 t R SSRSH usage_00086.pdb 41 GEKVGKLSLVD--- 51 usage_00130.pdb 46 EISVGSINLVD--- 56 usage_00133.pdb 47 AHSYGTLNLVDLAG 60 usage_00257.pdb 54 QKLSGKLYLVD--- 64 usage_00375.pdb 51 AIARGKLSFVD--- 61 usage_00376.pdb 54 AIARGKLSFVD--- 64 G l VD #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################