################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:47:02 2021 # Report_file: c_0154_1.html ################################################################################################ #==================================== # Aligned_structures: 8 # 1: usage_00001.pdb # 2: usage_00004.pdb # 3: usage_00005.pdb # 4: usage_00006.pdb # 5: usage_00008.pdb # 6: usage_00011.pdb # 7: usage_00029.pdb # 8: usage_00030.pdb # # Length: 162 # Identity: 23/162 ( 14.2%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 43/162 ( 26.5%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 26/162 ( 16.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 --MQRAY-GPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEP 57 usage_00004.pdb 1 --SRIRF-GFLTVTNLGVENMNHYKKTTLEIHNTEE-RQKRQVTHFQFLSWPDYGVPSSA 56 usage_00005.pdb 1 D-SRIRF-GFLTVTNLGVENMNHYKKTTLEIHNTEE-RQKRQVTHFQFLSW-----PSSA 52 usage_00006.pdb 1 --SRIRF-GFLTVTNLGVENMNHYKKTTLEIHNTEE-RQKRQVTHFQFLSWPDYGVPSSA 56 usage_00008.pdb 1 EKEMIFEDTNLKLTLISEDIKTYYTVRQLELENLTT-QETREILHFHYTTWPDFGVPESP 59 usage_00011.pdb 1 --GSSSY-GCYQVTCHSEEGNTAYIFRKMTLFNQEK-NESRPLTQIQYIAWPDHGVPDDS 56 usage_00029.pdb 1 --SRIRF-GFLTVTNLGVENMNHYKKTTLEIHNTEE-RQKRQVTHFQFLSWPDYGVPSSA 56 usage_00030.pdb 1 --SRIRF-GFLTVTNLGVENMNHYKKTTLEIHNTEE-RQKRQVTHFQFLSWPDYGVPSSA 56 g vT Y l n R h q W P usage_00001.pdb 58 GGVLSFLDQINQRQESLP----HAGPIIVHSSAGIGRTGTIIVIDMLMENISTKGLDCDI 113 usage_00004.pdb 57 ASLIDFLRVVRNQQSLAVSNMGAEPPIVVHCSAGIGRTGTFCSLDICLAQLEELG---TL 113 usage_00005.pdb 53 ASLIDFLRVVRNQQSLAVSNM-PEPPIVVHCSAGIGRTGTFCSLDICLAQLEELG---TL 108 usage_00006.pdb 57 ASLIDFLRVVRNQQSLAVSN-M-EPPIVVHCSAGIGRTGTFCSLDICLAQLEELG---TL 111 usage_00008.pdb 60 ASFLNFLFKVRESGSLSP----EHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKDPSSV 115 usage_00011.pdb 57 SDFLDFVCHVRNKRAG------KEEPVVVHCSAGIGRTGVLITMETAMCLIECNQ---PV 107 usage_00029.pdb 57 ASLIDFLRVVRNQQSLAVSN-M-EPPIVVHCSAGIGRTGTFCSLDICLAQLEELG---TL 111 usage_00030.pdb 57 ASLIDFLRVVRNQQSLAVSN-M-EPPIVVHCSAGIGRTGTFCSLDICLAQLEELG---TL 111 Fl vr P vVH SAGIGRtGt d usage_00001.pdb 114 DIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIETTKKKLE 155 usage_00004.pdb 114 NVFQTVSRMRTQRAFSIQTPEQYYFCYKAILEFAEKEG---- 151 usage_00005.pdb 109 NVFQTVSRMRTQRAFSIQTPEQYYFCYKAILEFAEKEG---- 146 usage_00006.pdb 112 NVFQTVSRMRTQRAFSIQTPEQYYFCYKAILEFAEKEG---- 149 usage_00008.pdb 116 DIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKFIMG--- 154 usage_00011.pdb 108 YPLDIVRTMRDQRAMMIQTPSQYRFVCEAILKVYE------- 142 usage_00029.pdb 112 NVFQTVSRMRTQRAFSIQTPEQYYFCYKAILEFAEKEG---- 149 usage_00030.pdb 112 NVFQTVSRMRTQRAFSIQTPEQYYFCYKAILEFAEKEG---- 149 mR qR iQT Qy F y Ai e #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################