################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:33:38 2021 # Report_file: c_0015_3.html ################################################################################################ #==================================== # Aligned_structures: 7 # 1: usage_00004.pdb # 2: usage_00005.pdb # 3: usage_00012.pdb # 4: usage_00013.pdb # 5: usage_00026.pdb # 6: usage_00029.pdb # 7: usage_00030.pdb # # Length: 263 # Identity: 136/263 ( 51.7%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 137/263 ( 52.1%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 30/263 ( 11.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00004.pdb 1 QDATTNPSLILAAAQMPAYQELVEEAIAYGKKLGGPQEEQIKNAIDKLFVLFGAEILKKI 60 usage_00005.pdb 1 QDATTNPSLILAAAQMPAYQELVEEAIAYGKKLGGPQEEQIKNAIDKLFVLFGAEILKKI 60 usage_00012.pdb 1 -DSTTNPSLILAASKLEKYARFIDAAVEYGRKHGKTDHEKIENAMDKILVEFGTQILKVV 59 usage_00013.pdb 1 -DSTTNPSLILAASKLEKYARFIDAAVEYGRKHGKTDHEKIENAMDKILVEFGTQILKVV 59 usage_00026.pdb 1 QDATTNPSLILAAAQMPAYQELVEEAIAYGKKLGGPQEEQIKNAIDKLFVLFGAEILKKI 60 usage_00029.pdb 1 QDATTNPSLILAAAQMPAYQELVEEAIAYGRKLGGSQEDQIKNAIDKLFVLFGAEILKKI 60 usage_00030.pdb 1 QDATTNPSLILAAAQMPAYQELVEEAIAYGRKLGGSQEDQIKNAIDKLFVLFGAEILKKI 60 D TTNPSLILAA Y A YG K G I NA DK V FG ILK usage_00004.pdb 61 PGRVSTEVDARLSFDKDAMVARARRLIELYKEAGVGKDRILIKLSSTWEGIQAGKELEEQ 120 usage_00005.pdb 61 PGRVSTEVDARLSFDKDAMVARARRLIELYKEAGVGKDRILIKLSSTWEGIQAGKELEEQ 120 usage_00012.pdb 60 PGRVSTEVDARLSFDKKATVKKALHIIKLYKDAGVPKERVLIKIASTWEGIQAARELEVK 119 usage_00013.pdb 60 PGRVSTEVDARLSFDKKATVKKALHIIKLYKDAGVPKERVLIKIASTWEGIQAARELEVK 119 usage_00026.pdb 61 PGRVSTEVDARLSFDKDAMVARARRLIELYKEAGVGKDRILIKLSSTWEGIQAGKELEEQ 120 usage_00029.pdb 61 PGRVSTEVDARLSFDKDAMVARARRLIELYKEAGISKDRILIKLSSTWEGIQAGKELEEQ 120 usage_00030.pdb 61 PGRVSTEVDARLSFDKDAMVARARRLIELYKEAGISKDRILIKLSSTWEGIQAGKELEEQ 120 PGRVSTEVDARLSFDK A V A I LYK AG K R LIK STWEGIQA ELE usage_00004.pdb 121 HGIHCNMTLLFSFAQAVACAEAGVTLISPFVGRILDWHVANTDKKSYEPQGDPGVKSVTK 180 usage_00005.pdb 121 HGIHCNMTLLFSFAQAVACAEAGVTLISPFVGRILDWHVANTDKKSYEPQGDPGVKSVTK 180 usage_00012.pdb 120 HGIHCNMTLLFSFTQAVACAEANVTLISPFVGRIMDFYKA-L---DYTAETDPGVLSVKK 175 usage_00013.pdb 120 HGIHCNMTLLFSFTQAVACAEANVTLISPFVGRIMDFY-K-A----YTAETDPGVLSVKK 173 usage_00026.pdb 121 HGIHCNMTLLFSFAQAVACAEAGVTLISPFVGRILDWHVA-N-------QGDPGVKSVTK 172 usage_00029.pdb 121 HGIHCNMTLLFSFAQAVACAEAGVTLISPFVGRILDWHVANTDKKSYEPLEDPGVKSVTK 180 usage_00030.pdb 121 HGIHCNMTLLFSFAQAVACAEAGVTLISPFVGRILDWHVANTDKKSYEPLEDPGVKSVTK 180 HGIHCNMTLLFSF QAVACAEA VTLISPFVGRI D a DPGV SV K usage_00004.pdb 181 IYNYYKKFGYKTIVMGASFRNTGEIKALAGCDFLTISPKLLGELLKDNSKLAPALSVKAA 240 usage_00005.pdb 181 IYNYYKKFGYKTIVMGASFRNTGEIKALAGCDFLTISPKLLGELLKDNSKLAPALSVKAA 240 usage_00012.pdb 176 IYSYYKRHGYATEVMAASFRNLDELKALAGIDNMTLPLNLLEQLYESTDPIENKLNSESA 235 usage_00013.pdb 174 IYSYYKRHGYATEVMAASFRNLDELKALAGIDNMTLPLNLLEQLYESTDPIENKLNSESA 233 usage_00026.pdb 173 IYNYYKKFGYKTIVMGASFRNTGEIKALAGCDFLTISPKLLGELLKDNSKLAPALSVKAA 232 usage_00029.pdb 181 IYNYYKKFSYKTIVMGASFRNTGEIKALAGCDFLTISPKLLGELLQDNAKLVPVLSAKAA 240 usage_00030.pdb 181 IYNYYKKFSYKTIVMGASFRNTGEIKALAGCDFLTISPKLLGELLQDNAKLVPVLSAKAA 240 IY YYK Y T VM ASFRN E KALAG D T LL L L A usage_00004.pdb 241 QTSDSEKIHLDEKAFRWLHNEDQ 263 usage_00005.pdb 241 QTS-------------------- 243 usage_00012.pdb 236 KEEG------------------- 239 usage_00013.pdb 234 KEEG------------------- 237 usage_00026.pdb 233 QTSDSEKIHLDEKAFRWLHNEDQ 255 usage_00029.pdb 241 QAS-------------------- 243 usage_00030.pdb 241 QAS-------------------- 243 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################