################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:18:40 2021 # Report_file: c_0043_7.html ################################################################################################ #==================================== # Aligned_structures: 15 # 1: usage_00004.pdb # 2: usage_00030.pdb # 3: usage_00116.pdb # 4: usage_00119.pdb # 5: usage_00120.pdb # 6: usage_00134.pdb # 7: usage_00145.pdb # 8: usage_00157.pdb # 9: usage_00178.pdb # 10: usage_00201.pdb # 11: usage_00242.pdb # 12: usage_00243.pdb # 13: usage_00244.pdb # 14: usage_00283.pdb # 15: usage_00287.pdb # # Length: 238 # Identity: 47/238 ( 19.7%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 71/238 ( 29.8%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 51/238 ( 21.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00004.pdb 1 QASLQS-G----YHFCGGSLISSTWVVSAAHCY-K---------SRIQVRLGEHNIAV-N 44 usage_00030.pdb 1 QVSLNS-G----SHFCGGSLINSQWVVSAAHCY-K---------SRIQVRLGEHNIDV-L 44 usage_00116.pdb 1 QVSLNS-G----SHFCGGSLINSQWVVSAAHCY-K---------SRIQVRLGEHNIDV-L 44 usage_00119.pdb 1 QVSLNS-G----SHFCGGSLINSQWVVSAAHCY-K---------SRIQVRLGEHNIDV-L 44 usage_00120.pdb 1 QVSLNS-G----SHFCGGSLINSQWVVSAAHCY-K---------SRIQVRLGEHNIDV-L 44 usage_00134.pdb 1 QVSLNS-G----SHFCGGSLINSQWVVSAAHCY-K---------SRIQVRLGEHNIDV-L 44 usage_00145.pdb 1 QISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDR----E----LTFRVVVGEHNLNQ-N 51 usage_00157.pdb 1 QVSLNS-G----SHFCGGSLINSQWVVSAAHCY-K---------SRIQVRLGEHNIDV-L 44 usage_00178.pdb 1 QVSLNS-G----SHFCGGSLINSQWVVSAAHCY-K---------SRIQVRLGEHNIDV-L 44 usage_00201.pdb 1 QVSLNS-G----SHFCGGSLINSQWVVSAAHCY-K---------SRIQVRLGEHNIDV-L 44 usage_00242.pdb 1 QVSLNS-G----SHFCGGSLINSQWVVSAAHCY-K---------SRIQVRLGEHNIDV-L 44 usage_00243.pdb 1 QVSLNS-G----SHFCGGSLINSQWVVSAAHCY-K---------SRIQVRLGEHNIDV-L 44 usage_00244.pdb 1 QVSLHALG---QGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRS 57 usage_00283.pdb 1 QVSLRTRF---GMHFCGGTLISPEWVLTAAHCLEK----S-PRPSSYKVILGAHQEVN-L 51 usage_00287.pdb 1 QVSLNS-G----SHFCGGSLINSQWVVSAAHCY-K---------SRIQVRLGEHNIDV-L 44 Q SL H CGg LI Wv AAHC v lG H usage_00004.pdb 45 EGTEQFIDSVKVIMHPSYNSRNL--DNDIMLIKLSKPASLNSYVSTVALPS--SCASSGT 100 usage_00030.pdb 45 EGNEQFINAAKIITHPNFNGNTL--DNDIMLIKLSSPATLNSRVATVSLPR--SCAAAGT 100 usage_00116.pdb 45 EGNEQFINAAKIITHPNFNGNTL--DNDIMLIKLSSPATLNSRVATVSLPR--SCAAAGT 100 usage_00119.pdb 45 EGNEQFINAAKIITHPNFNGNTL--DNDIMLIKLSSPATLNSRVATVSLPR--SCAAAGT 100 usage_00120.pdb 45 EGNEQFINAAKIITHPNFNGNTL--DNDIMLIKLSSPATLNSRVATVSLPR--SCAAAGT 100 usage_00134.pdb 45 EGNEQFINAAKIITHPNFNGNTL--DNDIMLIKLSSPATLNSRVATVSLPR--SCAAAGT 100 usage_00145.pdb 52 NGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNS 111 usage_00157.pdb 45 EGNEQFINAAKIITHPNFNGNTL--DNDIMLIKLSSPATLNSRVATVSLPR--SCAAAGT 100 usage_00178.pdb 45 EGNEQFINAAKIITHPNFNGNTL--DNDIMLIKLSSPATLNSRVATVSLPR--SCAAAGT 100 usage_00201.pdb 45 EGNEQFINAAKIITHPNFNGNTL--DNDIMLIKLSSPATLNSRVATVSLPR--SCAAAGT 100 usage_00242.pdb 45 EGNEQFINAAKIITHPNFNGNTL--DNDIMLIKLSSPATLNSRVATVSLPR--SCAAAGT 100 usage_00243.pdb 45 EGNEQFINAAKIITHPNFNGNTL--DNDIMLIKLSSPATLNSRVATVSLPR--SCAAAGT 100 usage_00244.pdb 58 APGVQERRLKRIISHPFFNDFTF--DYDIALLELEKPAEYSSMVRPICLPDASHVFPAGK 115 usage_00283.pdb 52 EPHVQEIEVSRLFLEPTR--------KDIALLKLSSPAVITDKVIPACLPSPNYVVADRT 103 usage_00287.pdb 45 EGNEQFINAAKIITHPNFNGNTL--DNDIMLIKLSSPATLNSRVATVSLPR--SCAAAGT 100 Q hP DI L L pa s V LP usage_00004.pdb 101 RCLVSGWGNLSGSSSNYPDTLRCLDLPILSSSSCNS--AYPGQITSNMFCAGFMEGGKDS 158 usage_00030.pdb 101 ECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKS--SYPGQITGNMICVGFLEGGKDS 158 usage_00116.pdb 101 ECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKS--SYPGQITGNMICVGFLEGGKDS 158 usage_00119.pdb 101 ECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKS--SYPGQITGNMICVGFLEGGKDS 158 usage_00120.pdb 101 ECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKS--SYPGQITGNMICVGFLEGGKDS 158 usage_00134.pdb 101 ECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKS--SYPGQITGNMICVGFLEGGKDS 158 usage_00145.pdb 112 PCYITGWGLTRT-NGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAG-GDGVRSG 169 usage_00157.pdb 101 ECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKS--SYPGQITGNMICVGFLEGGKDS 158 usage_00178.pdb 101 ECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKS--SYPGQITGNMICVGFLEGGKDS 158 usage_00201.pdb 101 ECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKS--SYPGQITGNMICVGFLEGGKDS 158 usage_00242.pdb 101 ECLISGWGNTK--GSSYPSLLQCLKAPVLSDSSCKS--SYPGQITGNMICVGFLEGGKDS 156 usage_00243.pdb 101 ECLISGWGNTK---SSYPSLLQCLKAPVLSDSSCKS--SYPGQITGNMICVGFLEGGKDS 155 usage_00244.pdb 116 AIWVTGWGHTQY-GGTGALILQKGEIRVIQQTTCEN--LLPQQITPRMMCVGFLSGGVDS 172 usage_00283.pdb 104 ECFITGWGETQ-GTFG-AGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDS 161 usage_00287.pdb 101 ECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKS--SYPGQITGNMICVGFLEGGKDS 158 c GWG t L p C m C G Gg ds usage_00004.pdb 159 CQGDSGGPVVCN-----GQLQGVVSWGY--GCAQRNKPGVYTKVCNYRSWISSTMSSN 209 usage_00030.pdb 159 CQGDSGGPVVCN-----GQLQGIVSWGY--GCAQKNKPGVYTKVCNYVNWIQQTIAA- 208 usage_00116.pdb 159 CQGDSGGPVVCN-----GQLQGIVSWGY--GCAQKNKPGVYTKVCNYVNWIQQTIAAN 209 usage_00119.pdb 159 CQGDSGGPVVCN-----GQLQGIVSWGY--GCAQKNKPGVYTKVCNYVNWIQQTIAAN 209 usage_00120.pdb 159 CQGDSGGPVVCN-----GQLQGIVSWGY--GCAQKNKPGVYTKVCNYVNWIQQTIAAN 209 usage_00134.pdb 159 CQGDSGGPVVCN-----GQLQGIVSWGY--GCAQKNKPGVYTKVCNYVNWIQQTIAAN 209 usage_00145.pdb 170 CQGDSGGPLHCLVN-GQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVIASN 226 usage_00157.pdb 159 CQGDSGGPVVCN-----GQLQGIVSWGY--GCAQKNKPGVYTKVCNYVNWIQQTIAAN 209 usage_00178.pdb 159 CQGDSGGPVVCN-----GQLQGIVSWGY--GCAQKNKPGVYTKVCNYVNWIQQTIAAN 209 usage_00201.pdb 159 CQGDSGGPVVCN-----GQLQGIVSWGY--GCAQKNKPGVYTKVCNYVNWIQQTIAAN 209 usage_00242.pdb 157 CQGDSGGPVVCN-----GQLQGIVSWGY--GCAQKNKPGVYTKVCNYVNWIQQTIAAN 207 usage_00243.pdb 156 CQGDSGGPVVCN-----GQLQGIVSWGY--GCAQKNKPGVYTKVCNYVNWIQQTIAAN 206 usage_00244.pdb 173 CQGDSGGPLSSVEADGRIFQAGVVSWGD--GCAQRNKPGVYTRLPLF----------- 217 usage_00283.pdb 162 CQGDSGGPLVCFEK-DKYILQGVTSWGL--GCARPNKPGVYVRVSRFVTWIEGVMRNN 216 usage_00287.pdb 159 CQGDSGGPVVCN-----GQLQGIVSWGY--GCAQKNKPGVYTKVCNYVNWIQQTIAAN 209 CQGDSGGP c G Swg GCa nKPgVyt v #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################