################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:59:01 2021 # Report_file: c_1121_9.html ################################################################################################ #==================================== # Aligned_structures: 13 # 1: usage_00039.pdb # 2: usage_00040.pdb # 3: usage_00041.pdb # 4: usage_00042.pdb # 5: usage_00043.pdb # 6: usage_00044.pdb # 7: usage_00045.pdb # 8: usage_00046.pdb # 9: usage_00047.pdb # 10: usage_00048.pdb # 11: usage_00049.pdb # 12: usage_00488.pdb # 13: usage_00489.pdb # # Length: 112 # Identity: 93/112 ( 83.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 93/112 ( 83.0%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 19/112 ( 17.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00039.pdb 1 -LPVLVLLVLLAVYDAISVYRTKHMITLA--EGVGAFVMGMGDLIMPSILVVSSHVF--- 54 usage_00040.pdb 1 -LPVLVLLVLLAVYDAISVYRTKHMITLA--EGVGAFVMGMGDLIMPSILVVSSHVF--- 54 usage_00041.pdb 1 PLPVLVLLVLLAVYDAISVYRTKHMITLA--EGVGAFVMGMGDLIMPSILVVSSHVF--- 55 usage_00042.pdb 1 -LPVLVLLVLLAVYDAISVYRTKHMITLA--EGVGAFVMGMGDLIMPSILVVSSHVF--- 54 usage_00043.pdb 1 -LPVLVLLVLLAVYDAISVYRTKHMITLA--EGVGAFVMGMGDLIMPSILVVSSHVF--- 54 usage_00044.pdb 1 PLPVLVLLVLLAVYDAISVYRTKHMITLA--EGVGAFVMGMGDLIMPSILVVSSHVF--- 55 usage_00045.pdb 1 PLPVLVLLVLLAVYDAISVYRTKHMITLA--EGVGAFVMGMGDLIMPSILVVSSHVF--- 55 usage_00046.pdb 1 -LPVLVLLVLLAVYDAISVYRTKHMITLA--EGVGAFVMGMGDLIMPSILVVSSHVF--- 54 usage_00047.pdb 1 -LPVLVLLVLLAVYDAISVYRTKHMITLA--EGVGAFVMGMGDLIMPSILVVSSHVF--- 54 usage_00048.pdb 1 -LPVLVLLVLLAVYDAISVYRTKHMITLAER---GAFVMGMGDLIMPSILVVSSHVFAVL 56 usage_00049.pdb 1 -LPVLVLLVLLAVYDAISVYRTKHMITLA--E--GAFVMGMGDLIMPSILVVSSHVF-VL 54 usage_00488.pdb 1 -LPVLVLLVLLAVYDAISVYRTKHMITLA--E--GAFVMGMGDLIMPSILVVSSHVF-VL 54 usage_00489.pdb 1 -LPVLVLLVLLAVYDAISVYRTKHMITLA--EGVGAFVMGMGDLIMPSILVVSSHVF-V- 55 LPVLVLLVLLAVYDAISVYRTKHMITLA GAFVMGMGDLIMPSILVVSSHVF usage_00039.pdb 55 --LSAPTLGAMVGSLVGLAVLLYFVNKGNPQAGLPPLNGGAILGFLVGAALA 104 usage_00040.pdb 55 --LSAPTLGAMVGSLVGLAVLLYFVNKGNPQAGLPPLNGGAILGFLVGAALA 104 usage_00041.pdb 56 --LSAPTLGAMVGSLVGLAVLLYFVNKGNPQAGLPPLNGGAILGFLVGAALA 105 usage_00042.pdb 55 --LSAPTLGAMVGSLVGLAVLLYFVNKGNPQAGLPPLNGGAILGFLVGAALA 104 usage_00043.pdb 55 --LSAPTLGAMVGSLVGLAVLLYFVNKGNPQAGLPPLNGGAILGFLVGAALA 104 usage_00044.pdb 56 --LSAPTLGAMVGSLVGLAVLLYFVNKGNPQAGLPPLNGGAILGFLVGAALA 105 usage_00045.pdb 56 --LSAPTLGAMVGSLVGLAVLLYFVNKGNPQAGLPPLNGGAILGFLVGA--- 102 usage_00046.pdb 55 --LSAPTLGAMVGSLVGLAVLLYFVNKGNPQAGLPPLNGGAILGFLVGAA-- 102 usage_00047.pdb 55 --LSAPTLGAMVGSLVGLAVLLYFVNKGNPQAGLPPLNGGAILGFLVGAALA 104 usage_00048.pdb 57 WTLSAPTLGAMVGSLVGLAVLLYFVNKGNPQAGLPPLNGGAILGFLVGAALA 108 usage_00049.pdb 55 WTLSAPTLGAMVGSLVGLAVLLYFVN----QAGLPPLNGGAILGFLVGA--- 99 usage_00488.pdb 55 WTLSAPTLGAMVGSLVGLAVLLYFVN----QAGLPPLNGGAILGFLVGA--- 99 usage_00489.pdb 56 ---SAPTLGAMVGSLVGLAVLLYFVNKGNPQAGLPPLNGGAILGFLVGAA-- 102 SAPTLGAMVGSLVGLAVLLYFVN QAGLPPLNGGAILGFLVGA #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################