################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:58:39 2021 # Report_file: c_0877_2.html ################################################################################################ #==================================== # Aligned_structures: 13 # 1: usage_00022.pdb # 2: usage_00031.pdb # 3: usage_00042.pdb # 4: usage_00043.pdb # 5: usage_00057.pdb # 6: usage_00080.pdb # 7: usage_00081.pdb # 8: usage_00094.pdb # 9: usage_00095.pdb # 10: usage_00097.pdb # 11: usage_00100.pdb # 12: usage_00121.pdb # 13: usage_00122.pdb # # Length: 140 # Identity: 30/140 ( 21.4%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 41/140 ( 29.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 54/140 ( 38.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00022.pdb 1 APDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPN 60 usage_00031.pdb 1 APEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPG 60 usage_00042.pdb 1 APEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPG 60 usage_00043.pdb 1 APEVILGM-GYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCP----E 55 usage_00057.pdb 1 APEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPG 60 usage_00080.pdb 1 APEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPG 60 usage_00081.pdb 1 APEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPG 60 usage_00094.pdb 1 APEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPG 60 usage_00095.pdb 1 APEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPG 60 usage_00097.pdb 1 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGA----- 55 usage_00100.pdb 1 APEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPG 60 usage_00121.pdb 1 APDVLMGSKKYSTTIDIWSVGCIFAEMVNGAPLFPGVSEADQLMRIFRILGTPNSKNWPN 60 usage_00122.pdb 1 APDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPN 60 AP g Y DIWS GCI aEmv LFPG DQl i r lGTP usage_00022.pdb 61 VTEL-PKY-------DPNFTVYEPLPWESFLKG-------------LDESGIDLLSKMLK 99 usage_00031.pdb 61 VTSM-PDY-------KPSFPKWARQDFSKVVPP-------------LDEDGRSLLSQMLH 99 usage_00042.pdb 61 VTSM-PDY-------KPSFPKWARQDFSKVVPP-------------LDEDGRSLLSQMLH 99 usage_00043.pdb 56 FMKKLQP-TVR--NYVENRPKYAGLTFPKLFPDSLFPADSEHNKLK-ASQARDLLSKMLV 111 usage_00057.pdb 61 VTSM-PDY-------KPSFPKWARQDFSKVVPP-------------LDEDGRSLLSQMLH 99 usage_00080.pdb 61 VTSM-PDY-------KPSFPKWARQDFSKVVPP-------------LDEDGRSLLSQMLH 99 usage_00081.pdb 61 VTSM-PD----------------------VVPP-------------LDEDGRSLLSQMLH 84 usage_00094.pdb 61 VTSM-PDY-------KPSFPKWARQDFSKVVPP-------------LDEDGRSLLSQMLH 99 usage_00095.pdb 61 VTSM-PDY-------KPSFPKWARQDFSKVVPP-------------LDEDGRSLLSQMLH 99 usage_00097.pdb 56 -----------ELNYIQSLAQMPKMNFANVFIG-------------ANPLAVDLLEKMLV 91 usage_00100.pdb 61 VTSM-PDY-------KPSFPKWARQDFSKVVPP-------------LDEDGRSLLSQMLH 99 usage_00121.pdb 61 VTEL-PKY-------DPNFTVYEPLPWESFLKG-------------LDESGIDLLSKMLK 99 usage_00122.pdb 61 VTEL-PKY-------DPNFTVYEPLPWESFLKG-------------LDESGIDLLSKMLK 99 LLs ML usage_00022.pdb 100 LDPNQRITAKQALEH----- 114 usage_00031.pdb 100 YDPNKRISAKAALAHPFFQ- 118 usage_00042.pdb 100 YDPNKRISAKAALAHPFFQ- 118 usage_00043.pdb 112 IDPAKRISVDDALQH----- 126 usage_00057.pdb 100 YDPNKRISAKAALAHPFFQ- 118 usage_00080.pdb 100 YDPNKRISAKAALAHPFFQ- 118 usage_00081.pdb 85 YDPNKRISAKAALAHPFFQ- 103 usage_00094.pdb 100 YDPNKRISAKAALAH----- 114 usage_00095.pdb 100 YDPNKRISAKAALAHPFFQ- 118 usage_00097.pdb 92 LDSDKRITAAQALAH----- 106 usage_00100.pdb 100 YDPNKRISAKAALAHPFFQ- 118 usage_00121.pdb 100 LDPNQRITAKQALEH----- 114 usage_00122.pdb 100 LDPNQRITAKQALEHAYFKE 119 Dp RI a AL H #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################