################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:19:38 2021 # Report_file: c_0959_161.html ################################################################################################ #==================================== # Aligned_structures: 5 # 1: usage_00540.pdb # 2: usage_00554.pdb # 3: usage_00709.pdb # 4: usage_01010.pdb # 5: usage_01229.pdb # # Length: 65 # Identity: 0/ 65 ( 0.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 1/ 65 ( 1.5%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 53/ 65 ( 81.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00540.pdb 1 -------VVSASFFEIYSGKVFDLL-SDKQK---LR------VLEDG-------KQ-QVQ 35 usage_00554.pdb 1 -------EVYVTFFEIYNGKVFDLL-NKKAK---LR------VLEDS-------RQ-QVQ 35 usage_00709.pdb 1 TFLETHD----GHSILLE---------PVRR---KANRLELDNFDSC-------A----- 32 usage_01010.pdb 1 -------EVYVTFFEIYNGKLFDLL-NKKAK---LR------VLEDG-------QV---- 32 usage_01229.pdb 1 -------------------VSAKYRG-AFCEAKIKT------VKRLVKVKVLLKQDNTTQ 34 v usage_00540.pdb 36 V---- 36 usage_00554.pdb 36 V---- 36 usage_00709.pdb ----- usage_01010.pdb 33 -QVVG 36 usage_01229.pdb 35 L---- 35 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################