################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:53:27 2021 # Report_file: c_1117_25.html ################################################################################################ #==================================== # Aligned_structures: 17 # 1: usage_00094.pdb # 2: usage_00095.pdb # 3: usage_00096.pdb # 4: usage_00097.pdb # 5: usage_00098.pdb # 6: usage_00136.pdb # 7: usage_00137.pdb # 8: usage_00138.pdb # 9: usage_00384.pdb # 10: usage_00478.pdb # 11: usage_00479.pdb # 12: usage_00492.pdb # 13: usage_00688.pdb # 14: usage_00689.pdb # 15: usage_00729.pdb # 16: usage_00824.pdb # 17: usage_00881.pdb # # Length: 107 # Identity: 43/107 ( 40.2%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 48/107 ( 44.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 23/107 ( 21.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00094.pdb 1 --SVQLVQSWYVQSLLDIMEFLDKDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEY 58 usage_00095.pdb 1 ----QLVQSWYVQSLLDIMEFLDKDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEY 56 usage_00096.pdb 1 ----QLVQSWYVQSLLDIMEFLDKDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEY 56 usage_00097.pdb 1 ----QLVQSWYVQSLLDIMEFLDKDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEY 56 usage_00098.pdb 1 -PSVQLVQSWYVQSLLDIMEFLDKDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEY 59 usage_00136.pdb 1 TPSVQLVQSWYIQSLQELLDFKDKSAEDAKAIYDFTDTVIRIRNRHNDVIPTMAQGVIEY 60 usage_00137.pdb 1 TPSVQLVQSWYIQSLQELLDFKDKSAEDAKAIYDFTDTVIRIRNRHNDVIPTMAQGVIEY 60 usage_00138.pdb 1 -PSVGLVQSWYMQSFLELLEYENKSPEDPQVLDNFLQVLIKVRNRHNDVVPTMAQGVIEY 59 usage_00384.pdb 1 -PSVQLVQSWYVQSLLDIMEFLDKDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEY 59 usage_00478.pdb 1 TSSVQLVKSWYIQSLMDLVEFHEKSPDDQKALSDFVDTLIKVRNRHHNVVPTMAQGIIEY 60 usage_00479.pdb 1 ---VQLVKSWYIQSLMDLVEFHEKSPDDQKALSDFVDTLIKVRNRHHNVVPTMAQGI-EY 56 usage_00492.pdb 1 -SSVQLVKSWYIQSLMDLVEFHEKSPDDQKALSDFVDTLIKVRNRHHNVVPTMAQGIIEY 59 usage_00688.pdb 1 -PSVQLVQSWYVQSLLDIMEFLDKDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEY 59 usage_00689.pdb 1 -PSVQLVQSWYVQSLLDIMEFLDKDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEY 59 usage_00729.pdb 1 TSSVQLVKSWYIQSLMDLVEFHEKSPDDQKALSDFVDTLIKVRNRHHNVVPTMAQGIIEY 60 usage_00824.pdb 1 -PSVQLVQSWYVQSLLDIMEFLDKDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEY 59 usage_00881.pdb 1 -PSVQLVQSWYVQSLLDIMEFLDKDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEY 59 qLV SWY QSl f K D F d RNRH V PTMAQG EY usage_00094.pdb 59 KD----TYGDDPV---SNQNIQYFLDRFYLSRISIRMLINQHTLIF- 97 usage_00095.pdb 57 KD----TYGDDPV---SNQNIQYFLDRFYLSRISIRMLINQHTLIF- 95 usage_00096.pdb 57 KD----TYGDDPV---SNQNIQYFLDRFYLSRISIRMLINQHTLIF- 95 usage_00097.pdb 57 KD----TYGDDPV---SNQNIQYFLDRFYLSRISIRMLINQHTLIF- 95 usage_00098.pdb 60 KD----TYGDDPV---SNQNIQYFLDRFYLSRISIRMLINQHTLIF- 98 usage_00136.pdb 61 KE----SF--DPV---TSQNVQYFLDRFYMSRISIRMLLNQHSLLFG 98 usage_00137.pdb 61 KE----SF--DPV---TSQNVQYFLDRFYMSRISIRMLLNQHSLLFG 98 usage_00138.pdb 60 KE----KFGFDPF---ISTNIQYFLDRFYTNRISFRMLINQHTLLFG 99 usage_00384.pdb 60 -------------DPVSNQNIQYFLDRFYLSRISIRMLINQHTLIF- 92 usage_00478.pdb 61 -----------------NQNLQYFLDRFYMNRISTRMLMNQHILIFS 90 usage_00479.pdb 57 KDACTV----DPV---TNQNLQYFLDRFYMNRISTRMLMNQHILIFS 96 usage_00492.pdb 60 KD----ACTVDPV---TNQNLQYFLDRFYMNRISTRMLMNQHILIFS 99 usage_00688.pdb 60 KD----TYGDDPV---SNQNIQYFLDRFYLSRISIRMLINQHTLIFD 99 usage_00689.pdb 60 KD----TYGDDPV---SNQNIQYFLDRFYLSRISIRMLINQHTLIFD 99 usage_00729.pdb 61 KD----AC--DPV---TNQNLQYFLDRFYMNRISTRMLMNQHILIFS 98 usage_00824.pdb 60 KD----TYGDDPV---SNQNIQYFLDRFYLSRISIRMLINQHTLIFD 99 usage_00881.pdb 60 KD----TYGDDPV---SNQNIQYFLDRFYLSRISIRMLINQHTLIF- 98 qN QYFLDRFY RIS RML NQH L F #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################