################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:06:53 2021 # Report_file: c_1396_1.html ################################################################################################ #==================================== # Aligned_structures: 8 # 1: usage_00541.pdb # 2: usage_00955.pdb # 3: usage_00956.pdb # 4: usage_01296.pdb # 5: usage_01303.pdb # 6: usage_01304.pdb # 7: usage_01535.pdb # 8: usage_01785.pdb # # Length: 139 # Identity: 5/139 ( 3.6%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 46/139 ( 33.1%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 60/139 ( 43.2%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00541.pdb 1 TDLAIFAVHLSGASSILGAINMITTFLNMRA-------PGMTMHKV-PLFA-------WS 45 usage_00955.pdb 1 -----PRMNNLSYWLYVAGTSLAVASLFAP-GGNGQLGSGIGWVL-YPPLST--SESGYS 51 usage_00956.pdb 1 -----PRMNNLSYWLYVAGTSLAVASLFAP-GGNGQLGSGIGWVL-YPPLST--SESGYS 51 usage_01296.pdb 1 ----FPRMNNLSYWLYVAGTSLAVASLFAP-GGNGQLGSGIGWVL-YPPLST--SESGYS 52 usage_01303.pdb 1 -----PRMNNLSYWLYVAGTSLAVASLFAP-GGNGQLGSGIGWVL-YPPLST--SESGYS 51 usage_01304.pdb 1 -----PRMNNLSYWLYVAGTSLAVASLFAP-GGNGQLGSGIGWVL-YPPLST--SESGYS 51 usage_01535.pdb 1 ----FPRMNNMSFWLLPPSFLLLLASSMVE------AGAGTGWTV-YPPLAGNLAHAGAS 49 usage_01785.pdb 1 -----PRMNNLSYWLYVAGTSLAVASLFAP-GGNGQLGSGIGWVL-YPPLST--SESGYS 51 prmnn s wl l asl G gw Ppl S usage_00541.pdb 46 IFVTAWLILLALPVLAGAITMLLTDRNFG----TTFFQPSGGGDP---V----LYQHILW 94 usage_00955.pdb 52 TDLAIFAVHLSGASSILGAINMITTFLNMRAPGMTM---HK-VP-LFAWSIFVTAWLILL 106 usage_00956.pdb 52 TDLAIFAVHLSGASSILGAINMITTFLNMRAPGMTM---HK-VP-LFAWSIFVTAWLILL 106 usage_01296.pdb 53 TDLAIFAVHLSGASSILGAINMITTFLNMRAPGMTM---HK-VP-LFAWSIFVTAWLILL 107 usage_01303.pdb 52 TDLAIFAVHLSGASSILGAINMITTFLNMRAPGMTM---HK-VP-LFAWSIFVTAWLILL 106 usage_01304.pdb 52 TDLAIFAVHLSGASSILGAINMITTFLNMRAPGMTM---HK-VP-LFAWSIFVTAWLILL 106 usage_01535.pdb 50 VDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQ---YQ-TP-LFVWSVMITAVL--- 101 usage_01785.pdb 52 TDLAIFAVHLSGASSILGAINMITTFLNMRAPGMTM---HK-VP-LFAWSIFVTAWLILL 106 dl if hL g ssilgain iTt nm mt p w ta l usage_00541.pdb 95 FFGHPEVYIIV-------- 105 usage_00955.pdb 107 ALPVLAGAITMLLTDRNFG 125 usage_00956.pdb 107 ALPVLAGAITMLLTDRNFG 125 usage_01296.pdb 108 ALPVLAGAITMLLTDR--- 123 usage_01303.pdb 107 ALPVLAGAITMLLTDR--- 122 usage_01304.pdb 107 ALPVLAGAITMLLTDR--- 122 usage_01535.pdb ------------------- usage_01785.pdb 107 ALPVLAGAITMLLTDRN-- 123 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################