################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:46:32 2021 # Report_file: c_0448_1.html ################################################################################################ #==================================== # Aligned_structures: 12 # 1: usage_00016.pdb # 2: usage_00017.pdb # 3: usage_00038.pdb # 4: usage_00039.pdb # 5: usage_00040.pdb # 6: usage_00041.pdb # 7: usage_00042.pdb # 8: usage_00043.pdb # 9: usage_00044.pdb # 10: usage_00045.pdb # 11: usage_00046.pdb # 12: usage_00047.pdb # # Length: 84 # Identity: 38/ 84 ( 45.2%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 38/ 84 ( 45.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 6/ 84 ( 7.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00016.pdb 1 AVQKRVQVSLKNGLQARPAALFVQEANRFHADIFIEKDGKTVNAKSI-GI-SLAIGTGS- 57 usage_00017.pdb 1 AVQKRVQVSLKNGLQARPAALFVQEANRFHADIFIEKDGKTVNAKSI-GI-SLAIGTGS- 57 usage_00038.pdb 1 MKEVTIEIKNKTGLHARPAALFVQTASKFSSQIWVEKDNKKVNAKSIMGIMSLGVSQGNV 60 usage_00039.pdb 1 MKEVTIEIKNKTGLHARPAALFVQTASKFSSQIWVEKDNKKVNAKSIMGIMSLGVSQGNV 60 usage_00040.pdb 1 MKEVTIEIKNKTGLHARPAALFVQTASKFSSQIWVEKDNKKVNAKSIMGIMSLGVSQGNV 60 usage_00041.pdb 1 MKEVTIEIKNKTGLHARPAALFVQTASKFSSQIWVEKDNKKVNAKSIMGIMSLGVSQGNV 60 usage_00042.pdb 1 MKEVTIEIKNKTGLHARPAALFVQTASKFSSQIWVEKDNKKVNAKSIMGIMSLGVSQGNV 60 usage_00043.pdb 1 MKEVTIEIKNKTGLHARPAALFVQTASKFSSQIWVEKDNKKVNAKSIMGIMSLGVSQGNV 60 usage_00044.pdb 1 MKEVTIEIKNKTGLHARPAALFVQTASKFSSQIWVEKDNKKVNAKSIMGIMSLGVSQGNV 60 usage_00045.pdb 1 MKEVTIEIKNKTGLHARPAALFVQTASKFSSQIWVEKDNKKVNAKSIMGIMSLGVSQGNV 60 usage_00046.pdb 1 MKEVTIEIKNKTGLHARPAALFVQTASKFSSQIWVEKDNKKVNAKSIMGIMSLGVSQGNV 60 usage_00047.pdb 1 MKEVTIEIKNKTGLHARPAALFVQTASKFSSQIWVEKDNKKVNAKSIMGIMSLGVSQGNV 60 K GL ARPAALFVQ A F I EKD K VNAKSI GI SL G usage_00016.pdb 58 ITITTEGSDAEEALEALAAYV--- 78 usage_00017.pdb 58 ITITTEGSDAEEALEALAAYV--- 78 usage_00038.pdb 61 VKLSAEGDDEEEAIKALVDLIESK 84 usage_00039.pdb 61 VKLSAEGDDEEEAIKALVDLIESK 84 usage_00040.pdb 61 VKLSAEGDDEEEAIKALVDLIES- 83 usage_00041.pdb 61 VKLSAEGDDEEEAIKALVDLIES- 83 usage_00042.pdb 61 VKLSAEGDDEEEAIKALVDLIESK 84 usage_00043.pdb 61 VKLSAEGDDEEEAIKALVDLIESK 84 usage_00044.pdb 61 VKLSAEGDDEEEAIKALVDLIESK 84 usage_00045.pdb 61 VKLSAEGDDEEEAIKALVDLIESK 84 usage_00046.pdb 61 VKLSAEGDDEEEAIKALVDLIESK 84 usage_00047.pdb 61 VKLSAEGDDEEEAIKALVDLIESK 84 EG D EEA AL #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################