################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:32:52 2021 # Report_file: c_0578_2.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00005.pdb # 2: usage_00013.pdb # 3: usage_00020.pdb # 4: usage_00059.pdb # 5: usage_00060.pdb # 6: usage_00062.pdb # 7: usage_00071.pdb # 8: usage_00113.pdb # 9: usage_00145.pdb # 10: usage_00159.pdb # 11: usage_00160.pdb # # Length: 117 # Identity: 24/117 ( 20.5%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 75/117 ( 64.1%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 42/117 ( 35.9%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00005.pdb 1 ----VMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGS 56 usage_00013.pdb 1 DCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGS 60 usage_00020.pdb 1 --VCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGS 58 usage_00059.pdb 1 ---CVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGS 57 usage_00060.pdb 1 ---CVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGS 57 usage_00062.pdb 1 DCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGS 60 usage_00071.pdb 1 DCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGS 60 usage_00113.pdb 1 --ASVLFADIV------------------VRFLDRLYSAFDELVDQ--HG-LEKIKVSGD 37 usage_00145.pdb 1 ----VMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGS 56 usage_00159.pdb 1 ----VMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGS 56 usage_00160.pdb 1 ---CVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGS 57 VmFAsIp lRlLneiiadFDdLlsk fs vEKIKtiGs usage_00005.pdb 57 TYMAATGLSAI--R-QYMHIGTMVEFAYALVGKLDAI---NKHSFNDFKLRVGINH- 106 usage_00013.pdb 61 TYMAATGLSA---R-QYMHIGTMVEFAYALVGKLDAI---NKHSFNDFKLRVGINHG 110 usage_00020.pdb 59 TYMAATGLSAI--R-QYMHIGTMVEFAYALVGKLDAI---NKHSFNDFKLRVGINHG 109 usage_00059.pdb 58 TYMAATGLSAI--R-QYMHIGTMVEFAYALVGKLDAI---NKHSFNDFKLRVGINHG 108 usage_00060.pdb 58 TYMAATGLSAI--R-QYMHIGTMVEFAYALVGKLDAI---NKHSFNDFKLRVGINHG 108 usage_00062.pdb 61 TYMAATGLSAI--R-QYMHIGTMVEFAYALVGKLDAI---NKHSFNDFKLRVGINHG 111 usage_00071.pdb 61 TYMAATGLSAI--R-QYMHIGTMVEFAYALVGKLDAI---NKHSFNDFKLRVGINHG 111 usage_00113.pdb 38 SYMVVSGVP--RPR-P-DHTQALADFALDMTNVAAQLDPR-----GNVPLRVGLAT- 84 usage_00145.pdb 57 TYMAATGLSA---R-QYMHIGTMVEFAYALVGKLDAI---NKHSFNDFKLRVGINHG 106 usage_00159.pdb 57 TYMAATGLSAI--R-QYMHIGTMVEFAYALVGKLDAI---NKHSFNDFKLRVGINHG 107 usage_00160.pdb 58 TYMAATGL------SQYMHIGTMVEFAYALVGKLDAI---NKHSFNDFKLRVGINHG 105 tYMaatGl q mHigtmveFAyalvgkldai ndfkLRVGinh #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################