################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:03:26 2021 # Report_file: c_1489_139.html ################################################################################################ #==================================== # Aligned_structures: 6 # 1: usage_00823.pdb # 2: usage_03378.pdb # 3: usage_03379.pdb # 4: usage_03427.pdb # 5: usage_03428.pdb # 6: usage_04122.pdb # # Length: 78 # Identity: 0/ 78 ( 0.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 4/ 78 ( 5.1%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 53/ 78 ( 67.9%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00823.pdb 1 -------KVQ----------------FVIDAVYAMAHALHHMNKDLCYRGVCPEMEQ-A- 35 usage_03378.pdb 1 TPKAEENLEK----------------ALKMAEELGQGLKHLAQEVAK----------AV- 33 usage_03379.pdb 1 -PKAEENLEK----------------ALKMAEELGQGLKHLAQEVAK----------AV- 32 usage_03427.pdb 1 --KAEENLEK----------------ALKMAEELGQGLKHLAQEVAK----------AVV 32 usage_03428.pdb 1 --KAEENLEK----------------ALKMAEELGQGLKHLAQEVAK----------AVV 32 usage_04122.pdb 1 --AASAIEQMKLEIASEFGVQLGAETTSRANGSVGGEITKRLVRLAQ----------QNM 48 a g h a usage_00823.pdb 36 ------GGKKLLKYIRHV 47 usage_03378.pdb 34 V-----YLEELTKLANSL 46 usage_03379.pdb 33 V-----YLEELTKLANSL 45 usage_03427.pdb 33 GERDSPYLEELTKLANSL 50 usage_03428.pdb 33 GERDSPYLEELTKLANSL 50 usage_04122.pdb ------------------ #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################