################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:16:12 2021 # Report_file: c_1298_200.html ################################################################################################ #==================================== # Aligned_structures: 16 # 1: usage_00239.pdb # 2: usage_00304.pdb # 3: usage_00305.pdb # 4: usage_00728.pdb # 5: usage_00729.pdb # 6: usage_00742.pdb # 7: usage_00773.pdb # 8: usage_00774.pdb # 9: usage_00775.pdb # 10: usage_01461.pdb # 11: usage_01462.pdb # 12: usage_01463.pdb # 13: usage_01464.pdb # 14: usage_01465.pdb # 15: usage_01725.pdb # 16: usage_01890.pdb # # Length: 57 # Identity: 6/ 57 ( 10.5%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 15/ 57 ( 26.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 22/ 57 ( 38.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00239.pdb 1 ----SVGYILDEMRRKSAAKG-----LETYGEGLEWGVLLGFGPGITVETI------ 42 usage_00304.pdb 1 ----CVLFIIDEVRKRSMAEG-----KSTTGEGLDCGVLFGFGPGMTVETVVLRSVR 48 usage_00305.pdb 1 ----CVLFIIDEVRKRSMAEG-----KSTTGEGLDCGVLFGFGPGMTVETVVLRS-- 46 usage_00728.pdb 1 ----CVLFILDEMRKKSTQNG-----LKTTGEGLEWGVLFGFGPGLTIETVVLRSVA 48 usage_00729.pdb 1 MSSACVLFILDEMRKKSTQNG-----LKTTGEGLEWGVLFGFGPGLTIETVVLRSVA 52 usage_00742.pdb 1 ----CVLFILDEMRKKSTQNG-----LKTTGEGLEWGVLFGFGPGLTIETV------ 42 usage_00773.pdb 1 -GGSSVYFILDEIRKKSMQEA-----KPTTGDGLEWGVLFAIGPGLTVETVILLSVP 51 usage_00774.pdb 1 -GGSSVYFILDEIRKKSMQEA-----KPTTGDGLEWGVLFAIGPGLTVETVILLSVP 51 usage_00775.pdb 1 -GGSSVYFILDEIRKKSMQEA-----KPTTGDGLEWGVLFAIGPGLTVETVILLSVP 51 usage_01461.pdb 1 -----VYFVMDELRKRSAVEG-----RSTTGDGLQWGVLLGFGPGLSIETVVLRSMP 47 usage_01462.pdb 1 -----VYFVMDELRKRSAVEG-----RSTTGDGLQWGVLLGFGPGLSIETV------ 41 usage_01463.pdb 1 -----VYFVMDELRKRSAVEG-----RSTTGDGLQWGVLLGFGPGLSIETVVLRSMP 47 usage_01464.pdb 1 -----VYFVMDELRKRSAVEG-----RSTTGDGLQWGVLLGFGPGLSIETVVLRS-- 45 usage_01465.pdb 1 -----VYFVMDELRKRSAVEG-----RSTTGDGLQWGVLLGFGPGLSIETV------ 41 usage_01725.pdb 1 ----SVGYILDEMRRKSAAKG-----LETYGEGLEWGVLLGFGPGITVETI------ 42 usage_01890.pdb 1 ---PSVMFVLSRVFKRHNAALAQGKP------GYQTGMAFSFSPGVGAEGILLRQ-- 46 V de r s Gl Gvl gPG Et #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################