################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:53:19 2021 # Report_file: c_1135_119.html ################################################################################################ #==================================== # Aligned_structures: 94 # 1: usage_00122.pdb # 2: usage_00123.pdb # 3: usage_00124.pdb # 4: usage_00125.pdb # 5: usage_00126.pdb # 6: usage_00127.pdb # 7: usage_00128.pdb # 8: usage_00129.pdb # 9: usage_00130.pdb # 10: usage_00131.pdb # 11: usage_00132.pdb # 12: usage_00133.pdb # 13: usage_00147.pdb # 14: usage_00148.pdb # 15: usage_00288.pdb # 16: usage_00289.pdb # 17: usage_00290.pdb # 18: usage_00291.pdb # 19: usage_00345.pdb # 20: usage_00346.pdb # 21: usage_00347.pdb # 22: usage_00348.pdb # 23: usage_00411.pdb # 24: usage_00412.pdb # 25: usage_00413.pdb # 26: usage_00414.pdb # 27: usage_00415.pdb # 28: usage_00416.pdb # 29: usage_00426.pdb # 30: usage_00427.pdb # 31: usage_00470.pdb # 32: usage_00471.pdb # 33: usage_00555.pdb # 34: usage_00556.pdb # 35: usage_00560.pdb # 36: usage_00561.pdb # 37: usage_00562.pdb # 38: usage_00563.pdb # 39: usage_00564.pdb # 40: usage_00565.pdb # 41: usage_00566.pdb # 42: usage_00567.pdb # 43: usage_00569.pdb # 44: usage_00570.pdb # 45: usage_00572.pdb # 46: usage_00573.pdb # 47: usage_00586.pdb # 48: usage_00587.pdb # 49: usage_00604.pdb # 50: usage_00605.pdb # 51: usage_00619.pdb # 52: usage_00620.pdb # 53: usage_00696.pdb # 54: usage_00697.pdb # 55: usage_00698.pdb # 56: usage_00699.pdb # 57: usage_00700.pdb # 58: usage_00701.pdb # 59: usage_00702.pdb # 60: usage_00703.pdb # 61: usage_00705.pdb # 62: usage_00706.pdb # 63: usage_00796.pdb # 64: usage_00797.pdb # 65: usage_01048.pdb # 66: usage_01049.pdb # 67: usage_01050.pdb # 68: usage_01051.pdb # 69: usage_01052.pdb # 70: usage_01053.pdb # 71: usage_01055.pdb # 72: usage_01056.pdb # 73: usage_01068.pdb # 74: usage_01069.pdb # 75: usage_01070.pdb # 76: usage_01071.pdb # 77: usage_01090.pdb # 78: usage_01091.pdb # 79: usage_01092.pdb # 80: usage_01093.pdb # 81: usage_01171.pdb # 82: usage_01172.pdb # 83: usage_01196.pdb # 84: usage_01197.pdb # 85: usage_01278.pdb # 86: usage_01279.pdb # 87: usage_01292.pdb # 88: usage_01293.pdb # 89: usage_01294.pdb # 90: usage_01295.pdb # 91: usage_01355.pdb # 92: usage_01356.pdb # 93: usage_01357.pdb # 94: usage_01358.pdb # # Length: 65 # Identity: 53/ 65 ( 81.5%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 53/ 65 ( 81.5%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 8/ 65 ( 12.3%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00122.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00123.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00124.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00125.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00126.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00127.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00128.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00129.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00130.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00131.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00132.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00133.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00147.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00148.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00288.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00289.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00290.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00291.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00345.pdb 1 ---QILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 57 usage_00346.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00347.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00348.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00411.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00412.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00413.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00414.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00415.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00416.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00426.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00427.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00470.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00471.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00555.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00556.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00560.pdb 1 ---QILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 57 usage_00561.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00562.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00563.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00564.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00565.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00566.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00567.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00569.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00570.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00572.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00573.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00586.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00587.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00604.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00605.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00619.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00620.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00696.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00697.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00698.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00699.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00700.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00701.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00702.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00703.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00705.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00706.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_00796.pdb 1 SWPQILGRLTDNRDLARGQAAWA-DQI-TGNARPAQIAAFAVA-T-KAPTADEVGELAGV 56 usage_00797.pdb 1 SWPQILGRLTDNRDLARGQAAWA-DQI-TGNARPAQIAAFAVA-T-KAPTADEVGELAGV 56 usage_01048.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_01049.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_01050.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_01051.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_01052.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_01053.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_01055.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_01056.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_01068.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_01069.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_01070.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_01071.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_01090.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_01091.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_01092.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_01093.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_01171.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_01172.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_01196.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_01197.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_01278.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_01279.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_01292.pdb 1 ---QILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 57 usage_01293.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_01294.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_01295.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_01355.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_01356.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_01357.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 usage_01358.pdb 1 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGV 60 QILGRLTDNRDLARGQAAWA DQI TGNARPAQIAAFAVA T KAPTADEVGELAGV usage_00122.pdb 61 MLSHA 65 usage_00123.pdb 61 MLSHA 65 usage_00124.pdb 61 MLSHA 65 usage_00125.pdb 61 MLSHA 65 usage_00126.pdb 61 MLSHA 65 usage_00127.pdb 61 MLSHA 65 usage_00128.pdb 61 MLSHA 65 usage_00129.pdb 61 MLSHA 65 usage_00130.pdb 61 MLSHA 65 usage_00131.pdb 61 MLSHA 65 usage_00132.pdb 61 MLSHA 65 usage_00133.pdb 61 MLSHA 65 usage_00147.pdb 61 MLSHA 65 usage_00148.pdb 61 MLSHA 65 usage_00288.pdb 61 MLSHA 65 usage_00289.pdb 61 MLSHA 65 usage_00290.pdb 61 MLSHA 65 usage_00291.pdb 61 MLSHA 65 usage_00345.pdb 58 MLSHA 62 usage_00346.pdb 61 MLSHA 65 usage_00347.pdb 61 MLSHA 65 usage_00348.pdb 61 MLSHA 65 usage_00411.pdb 61 MLSHA 65 usage_00412.pdb 61 MLSHA 65 usage_00413.pdb 61 MLSHA 65 usage_00414.pdb 61 MLSHA 65 usage_00415.pdb 61 MLSHA 65 usage_00416.pdb 61 MLSHA 65 usage_00426.pdb 61 MLSHA 65 usage_00427.pdb 61 MLSHA 65 usage_00470.pdb 61 MLSHA 65 usage_00471.pdb 61 MLSHA 65 usage_00555.pdb 61 MLSHA 65 usage_00556.pdb 61 MLSHA 65 usage_00560.pdb 58 MLSHA 62 usage_00561.pdb 61 MLSHA 65 usage_00562.pdb 61 MLSHA 65 usage_00563.pdb 61 MLSHA 65 usage_00564.pdb 61 MLSHA 65 usage_00565.pdb 61 MLSHA 65 usage_00566.pdb 61 MLSHA 65 usage_00567.pdb 61 MLSHA 65 usage_00569.pdb 61 MLSHA 65 usage_00570.pdb 61 MLSHA 65 usage_00572.pdb 61 MLSHA 65 usage_00573.pdb 61 MLSHA 65 usage_00586.pdb 61 MLSHA 65 usage_00587.pdb 61 MLSHA 65 usage_00604.pdb 61 MLSHA 65 usage_00605.pdb 61 MLSHA 65 usage_00619.pdb 61 MLSHA 65 usage_00620.pdb 61 MLSHA 65 usage_00696.pdb 61 MLSHA 65 usage_00697.pdb 61 MLSHA 65 usage_00698.pdb 61 MLSHA 65 usage_00699.pdb 61 MLSHA 65 usage_00700.pdb 61 MLSHA 65 usage_00701.pdb 61 MLSHA 65 usage_00702.pdb 61 MLSHA 65 usage_00703.pdb 61 MLSHA 65 usage_00705.pdb 61 MLSHA 65 usage_00706.pdb 61 MLSHA 65 usage_00796.pdb 57 LSHA- 60 usage_00797.pdb 57 LSHA- 60 usage_01048.pdb 61 MLSHA 65 usage_01049.pdb 61 MLSHA 65 usage_01050.pdb 61 MLSHA 65 usage_01051.pdb 61 MLSHA 65 usage_01052.pdb 61 MLSHA 65 usage_01053.pdb 61 MLSHA 65 usage_01055.pdb 61 MLSHA 65 usage_01056.pdb 61 MLSHA 65 usage_01068.pdb 61 MLSHA 65 usage_01069.pdb 61 MLSHA 65 usage_01070.pdb 61 MLSHA 65 usage_01071.pdb 61 MLSHA 65 usage_01090.pdb 61 MLSHA 65 usage_01091.pdb 61 MLSHA 65 usage_01092.pdb 61 MLSHA 65 usage_01093.pdb 61 MLSHA 65 usage_01171.pdb 61 MLSHA 65 usage_01172.pdb 61 MLSHA 65 usage_01196.pdb 61 MLSHA 65 usage_01197.pdb 61 MLSHA 65 usage_01278.pdb 61 MLSHA 65 usage_01279.pdb 61 MLSHA 65 usage_01292.pdb 58 MLSHA 62 usage_01293.pdb 61 MLSHA 65 usage_01294.pdb 61 MLSHA 65 usage_01295.pdb 61 MLSHA 65 usage_01355.pdb 61 MLSHA 65 usage_01356.pdb 61 MLSHA 65 usage_01357.pdb 61 MLSHA 65 usage_01358.pdb 61 MLSHA 65 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################