################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:39:01 2021 # Report_file: c_0114_13.html ################################################################################################ #==================================== # Aligned_structures: 7 # 1: usage_00040.pdb # 2: usage_00053.pdb # 3: usage_00054.pdb # 4: usage_00059.pdb # 5: usage_00060.pdb # 6: usage_00069.pdb # 7: usage_00094.pdb # # Length: 136 # Identity: 50/136 ( 36.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 82/136 ( 60.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 27/136 ( 19.9%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00040.pdb 1 -VQLKESGPGLVAPSQSLSITCTVSGFSLTN-------Y--GVDWVRQPPGKGLEWVGVI 50 usage_00053.pdb 1 -VQLQESGPGLVKPSETLSLTCAVSGYSISS-------G-YYWGWIRQPPGKGLEWIGSI 51 usage_00054.pdb 1 -VQLQESGPGLVKPSETLSLTCAVSGYSISS-------G-YYWGWIRQPPGKGLEWIGSI 51 usage_00059.pdb 1 -VQLQESGPGLVKPSETLSLTCAVSGYSISS-------G-YYWGWIRQPPGKGLEWIGSI 51 usage_00060.pdb 1 -VQLQESGPGLVKPSETLSLTCAVSGYSISS-------G-YYWGWIRQPPGKGLEWIGSI 51 usage_00069.pdb 1 QLQMQESGPGLVKPSETLSLSCTVSGDSIRGGEWGDKD--YHWGWVRHSAGKGLEWIGSI 58 usage_00094.pdb 1 -VQLQESGPGLVKPSQTLSLTCTVSGGSISS-------GDYYWSWIRQPPGKGLEWIGYI 52 vQlqESGPGLVkPS tLSltC VSG Si w W RqppGKGLEWiG I usage_00040.pdb 51 WSGGSTNYNSALMSRLSISKDNSKSQVFLKMNSLQTDDTAVYYCAKHW-GY--------- 100 usage_00053.pdb 52 YHSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAGLT------------ 99 usage_00054.pdb 52 YHSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAGLT------------ 99 usage_00059.pdb 52 YHSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAGLT-Q-SS-H----- 103 usage_00060.pdb 52 YHSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAGLT-Q-SS-H----- 103 usage_00069.pdb 59 HWRGTTHYKESLRRRVSMSIDTSRNWFSLRLASVTAADTAVYFCARHRHH-DVFMLVPIA 117 usage_00094.pdb 53 YYSGSTDYNPSLKSRVTMSVDTSKNQFSLKVNSVTAADTAVYYCARVS-I-FG-V----- 104 GsT Yn sL sRv S DtSknqfsLk SvtaaDTAVYyCA usage_00040.pdb 101 -GM-DHWGQGTTVTVS 114 usage_00053.pdb 100 -ND-ANWGQGTLTTVS 113 usage_00054.pdb 100 ----ANWGQGTLTTVS 111 usage_00059.pdb 104 -ND-ANWGQGTLTTVS 117 usage_00060.pdb 104 -ND-ANWGQGTLTTVS 117 usage_00069.pdb 118 GWF-DVWGPGVQVTVS 132 usage_00094.pdb 105 -GTFDYWGQGTLVTVS 119 WGqGt TVS #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################