################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:09:10 2021 # Report_file: c_0673_151.html ################################################################################################ #==================================== # Aligned_structures: 10 # 1: usage_00252.pdb # 2: usage_00379.pdb # 3: usage_00380.pdb # 4: usage_00448.pdb # 5: usage_00484.pdb # 6: usage_00874.pdb # 7: usage_01149.pdb # 8: usage_01301.pdb # 9: usage_01342.pdb # 10: usage_01676.pdb # # Length: 86 # Identity: 3/ 86 ( 3.5%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 5/ 86 ( 5.8%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 49/ 86 ( 57.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00252.pdb 1 GITDYNSALK-SRLSVTKDNSKSQVFLKMNSLQSGDSARYYCVTGL-------------- 45 usage_00379.pdb 1 -NTYYNPSLK-SRITISQHTSENQFSLKLNSVTVADTAVYYCARGTR---LR-----TL- 49 usage_00380.pdb 1 -NTYYNPSLK-SRITISQHTSENQFSLKLNSVTVADTAVYYCARGTR---LR-----TL- 49 usage_00448.pdb 1 -DTNYNPSLK-RRVTFSLDTAKNEVSLKLVDLTAADSATYFCARALH---GKRIYGI-V- 53 usage_00484.pdb 1 -NTNYNEKFK-GKATLTVDTSSSTAYVDLSSLTSEDSAVYYCVRG--------------- 43 usage_00874.pdb 1 SKDVLESGLSPGKYYTHTPR-RWSWILILRNLIENDSGVYYCATWD-----R-----NN- 48 usage_01149.pdb 1 -STNYNPSLK-SRVTISVDTSKNQFSLKLSSVTAADAAIYYCARGYAD--TP-----VFR 51 usage_01301.pdb 1 ------------RVTISLDMSKNQFSLNLTSVTAADTAVYFCARRSN---WP-----Y-- 38 usage_01342.pdb 1 GNTYYNPSLK-SRLTISVDTTQNQFSLKLTSVTAADTAVYYCARVPR---LR-----GG- 50 usage_01676.pdb 1 GTPNYAQKFQ-GRVTITADQSTRTAYMDLRSLRSEDTAVYYCARSPSYICSG-------- 51 l D a Y C usage_00252.pdb 46 ------FDYWGQGTTLTVS------- 58 usage_00379.pdb 50 ---RNAFDIWGQ-------------- 58 usage_00380.pdb 50 ---RNAFDIWGQ-------------- 58 usage_00448.pdb 54 ---ALG-ELFTY--FYM--------- 64 usage_00484.pdb 44 ------FAYWGQGTLVT--------- 54 usage_00874.pdb 49 -----K-KLFGSGTTLVVTE------ 62 usage_01149.pdb 52 RYYYYGMDVWAKGTTVT--------- 68 usage_01301.pdb 39 ----LPFDPWGQGTLVTVSSASTKGP 60 usage_01342.pdb 51 ----NYFDSWGQGTLVTVS------- 65 usage_01676.pdb 52 --GTCVFDHWGQGTLVT--------- 66 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################