################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:56:09 2021 # Report_file: c_0118_4.html ################################################################################################ #==================================== # Aligned_structures: 13 # 1: usage_00001.pdb # 2: usage_00003.pdb # 3: usage_00038.pdb # 4: usage_00065.pdb # 5: usage_00076.pdb # 6: usage_00096.pdb # 7: usage_00141.pdb # 8: usage_00262.pdb # 9: usage_00323.pdb # 10: usage_00372.pdb # 11: usage_00427.pdb # 12: usage_00488.pdb # 13: usage_00497.pdb # # Length: 127 # Identity: 48/127 ( 37.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 58/127 ( 45.7%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 16/127 ( 12.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 VQLQESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNS 60 usage_00003.pdb 1 VQLQESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQLPGKGLEWLGMIWGDGNTAYNS 60 usage_00038.pdb 1 VQLQESGPGLVRPSQTLSLTCTVSGFSLTGYGVNWVRQPPGRGLEWIGMIWGDGNTDYNS 60 usage_00065.pdb 1 VQLLESGPGLVAPSQSLSITCTVSGFSLTNYGVDWVRQPPGKGLEWVGVIWSGGSTNYNS 60 usage_00076.pdb 1 VQLKQSGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQSPGKGLEWLGMIWGDGRTDYKS 60 usage_00096.pdb 1 VQLQESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNS 60 usage_00141.pdb 1 VQLQESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNS 60 usage_00262.pdb 1 -QLKESGPVLVAPSQSLFISCTVSGFSLTRYGVHWVRQSPGKGLEWLGVIWAGGTTNYNS 59 usage_00323.pdb 1 VQLKESGPGLVQPSQTLSLTCTVSGFSLTNNNVNWVRQATGRGLEWMGGVWAGGATDYNS 60 usage_00372.pdb 1 -QLKESGPGLVAPGGSLSITCTVSGFSLTDSSINWVRQPPGKGLEWLGMIWGDGRIDYAD 59 usage_00427.pdb 1 VQLKESGPGLVAPGGSLSITCTVSGFSLTDSSINWVRQPPGKGLEWLGMIWGDGRIDYAD 60 usage_00488.pdb 1 VQLQESGPGLVRPSQTLSLTCTVSGFSLTGYGVNWVRQPPGRGLEWIGMIWGDGNTDYNS 60 usage_00497.pdb 1 VQLKESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNS 60 QL eSGPgLV P Ls tCTVSGFSLT WVRQ pG GLEW G iW G Y usage_00001.pdb 61 ALKSRLSISKDNSKSQVFLKMNSLHTDDTARYYCARER------D-----YRLDYWG--Q 107 usage_00003.pdb 61 ALKSRLSISKDNSKSQVFLEMDSLHTDDTARYYCARER------D-----YRLDYWG--Q 107 usage_00038.pdb 61 ALKSRVTMLKDTSKNQFSLRLSSVTAADTAVYYCARER------D-----YRLDYWG--Q 107 usage_00065.pdb 61 ALMSRLSISKDNSKSQVFLKMNSLQTDDTAVYYCAKHW------GGYYIPYGMDHWG--Q 112 usage_00076.pdb 61 ALKSRLSITKDNSKSQVFLKMNSLQTDDTARYFCASDY------Y-----GSGSFAYWGQ 109 usage_00096.pdb 61 ALKSRLSISKDNSKSQVFLKMNSLHTDDTARYYCARER------D-----YRLDYWG--Q 107 usage_00141.pdb 61 ALKSRLSISKDNSKSQVFLKMNSLHTDDTARYYCARER------D-----YRLDYWG--Q 107 usage_00262.pdb 60 AFMSRLTISKDNSKSQVFLKMNSLQTDDTAIYYCVKAY------R-----NAMDYWG--Q 106 usage_00323.pdb 61 ALKSRLTITRDTSKSQVFLKMHSLQSEDTATYYCARDGGYSSSTL-----YAMDAWG--Q 113 usage_00372.pdb 60 ALKSRLSISKDSSKSQVFLEMTSLRTDDTATYYCARDG------Y-----FPYAMDFWGQ 108 usage_00427.pdb 61 ALKSRLSISKDSSKSQVFLEMTSLRTDDTATYYCARDG------Y-----FPYAMDFWGQ 109 usage_00488.pdb 61 ALKSRVTMLKDTSKNQFSLRLSSVTAADTAVYYCARER------D-----YRLDYWG--Q 107 usage_00497.pdb 61 ALKSRLSISKDNSKSQVFLKMNSLHTDDTARYYCARER------D-----YRLDYWG--Q 107 Al SR kD SK Q L S DTA YyCa Q usage_00001.pdb 108 GTTLTV- 113 usage_00003.pdb 108 GTTVTV- 113 usage_00038.pdb 108 GSLVTV- 113 usage_00065.pdb 113 GTTVTV- 118 usage_00076.pdb 110 GTLVTV- 115 usage_00096.pdb 108 GTTLTV- 113 usage_00141.pdb 108 GTTLTV- 113 usage_00262.pdb 107 GTSVTVS 113 usage_00323.pdb 114 GTTVTVS 120 usage_00372.pdb 109 GTSVTVS 115 usage_00427.pdb 110 GTSVTVS 116 usage_00488.pdb 108 GSLVT-- 112 usage_00497.pdb 108 GTTLTV- 113 G T #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################