################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:57:49 2021 # Report_file: c_0389_9.html ################################################################################################ #==================================== # Aligned_structures: 13 # 1: usage_00014.pdb # 2: usage_00054.pdb # 3: usage_00055.pdb # 4: usage_00056.pdb # 5: usage_00057.pdb # 6: usage_00072.pdb # 7: usage_00088.pdb # 8: usage_00089.pdb # 9: usage_00162.pdb # 10: usage_00203.pdb # 11: usage_00220.pdb # 12: usage_00221.pdb # 13: usage_00222.pdb # # Length: 82 # Identity: 11/ 82 ( 13.4%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 34/ 82 ( 41.5%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 17/ 82 ( 20.7%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00014.pdb 1 LLGVSSQKMD--GMGIEMID----EKLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTA 54 usage_00054.pdb 1 LLGISSQKMD--GMGIEMID----EKLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTA 54 usage_00055.pdb 1 LLGISSQKMD--GMGIEMID----EKLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTA 54 usage_00056.pdb 1 LLGISSQKMD--GMGIEMID----EKLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTA 54 usage_00057.pdb 1 LLGISSQKMD--GMGIEMID----EKLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTA 54 usage_00072.pdb 1 LFALWAPDLRAVPLSVALVDYHKKQLVVLAVE--H-TALALMEI----KVCDGQEHVVTV 53 usage_00088.pdb 1 LLGISSAKVD--AIGLEIVD----GKVLFHVNNGAGRITATYQPRAARALCDGKWHTLQA 54 usage_00089.pdb 1 LLGISSAKVD--AIGLEIVD----GKVLFHVNNGAGRITATYQPRAARALCDGKWHTLQA 54 usage_00162.pdb 1 LLGVSSQKMD--GMGIEMID----EKLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTA 54 usage_00203.pdb 1 LLGVSSQKMD--GMGIEMID----EKLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTA 54 usage_00220.pdb 1 LLGVSSQKMD--GMGIEMID----EKLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTA 54 usage_00221.pdb 1 LLGVSSQKMD--GMGIEMID----EKLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTA 54 usage_00222.pdb 1 LLGVSSQKMD--GMGIEMID----EKLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTA 54 Llg ss k d g e D k fhV a r tA y C G wH a usage_00014.pdb 55 KKIKNRLELVVDGNQVDAQSP- 75 usage_00054.pdb 55 KKIKNRLELVVDGNQVDAQ--- 73 usage_00055.pdb 55 KKIKNRLELVVDGNQVDAQ--- 73 usage_00056.pdb 55 KKIKNRLELVVDGNQVDAQ--- 73 usage_00057.pdb 55 KKIKNRLELVVDGNQVDAQ--- 73 usage_00072.pdb 54 SLRDGEATLEVDGTRGQS-E-- 72 usage_00088.pdb 55 HKSKHRIVLTVDGNSVRAE--- 73 usage_00089.pdb 55 HKSKHRIVLTVDGNSVRAESPH 76 usage_00162.pdb 55 KKIKNRLELVVDGNQVDAQ--- 73 usage_00203.pdb 55 KKIKNRLELVVDGNQVDAQSPN 76 usage_00220.pdb 55 KKIKNRLELVVDGNQVDAQSP- 75 usage_00221.pdb 55 KKIKNRLELVVDGNQVDAQ--- 73 usage_00222.pdb 55 KKIKNRLELVVDGNQVDAQ--- 73 k k r L VDGn v a #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################