################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 03:02:53 2021 # Report_file: c_0209_11.html ################################################################################################ #==================================== # Aligned_structures: 24 # 1: usage_00025.pdb # 2: usage_00039.pdb # 3: usage_00041.pdb # 4: usage_00046.pdb # 5: usage_00057.pdb # 6: usage_00130.pdb # 7: usage_00134.pdb # 8: usage_00135.pdb # 9: usage_00145.pdb # 10: usage_00146.pdb # 11: usage_00147.pdb # 12: usage_00170.pdb # 13: usage_00171.pdb # 14: usage_00172.pdb # 15: usage_00195.pdb # 16: usage_00202.pdb # 17: usage_00231.pdb # 18: usage_00235.pdb # 19: usage_00238.pdb # 20: usage_00263.pdb # 21: usage_00288.pdb # 22: usage_00289.pdb # 23: usage_00360.pdb # 24: usage_00386.pdb # # Length: 114 # Identity: 22/114 ( 19.3%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 46/114 ( 40.4%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 16/114 ( 14.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00025.pdb 1 DIQMTQSPAIMSASPGEKVTMTCSASSS-V---SY--MYWYQQKPGSSPRLLIYDSTNLA 54 usage_00039.pdb 1 --VLTQSPTIMSVSPGEKVTLTCSASSS-V---SSNYVYWYQQKPGSSPKVWIYSTSNLA 54 usage_00041.pdb 1 --VLTQSPAIMSASLGDRVTMTCTASSS-V---SSSYLHWYQQKPGSSPKLWIYSTSNLA 54 usage_00046.pdb 1 -NVLTQSPAIMSTSPGEKVTMTCRASSS-V---GSSYLHWYQQKSGASPKLWIYSTSNLA 55 usage_00057.pdb 1 --VLSQSPAIMSASPGEKVTITCSASSS-V---SY--MHWFQQKPGTSPKLCIYTTSNLA 52 usage_00130.pdb 1 --VLTQSPALMSASPGEKVTMTCSASSS-V---SY--MYWYQQKPRSSPKPWIYLTSNLA 52 usage_00134.pdb 1 --VLTQSPTIMSVSPGEKVTLTCSASSS-V---SSNYVYWYQQKPGSSPKVWIYSTSNLA 54 usage_00135.pdb 1 --VLTQSPTIMSVSPGEKVTLTCSASSS-V---SSNYVYWYQQKPGSSPKVWIYSTSNLA 54 usage_00145.pdb 1 DIVLTQSPAIMSAAPGDKVTMTCSASSS-V---SY--IHWYQQKSGTSPKRWIYDTSKLT 54 usage_00146.pdb 1 DIVLTQSPAIMSAAPGDKVTMTCSASSS-V---SY--IHWYQQKSGTSPKRWIYDTSKLT 54 usage_00147.pdb 1 DIVLTQSPAIMSAAPGDKVTMTCSASSS-V---SY--IHWYQQKSGTSPKRWIYDTSKLT 54 usage_00170.pdb 1 -VVLTQSPGIMSASPGEKVTITCSASSS-V---SY--MYWFQQKPGTSPKLWIYSTSNLA 53 usage_00171.pdb 1 QVVLTQSPGIMSASPGEKVTITCSASSS-V---SY--MYWFQQKPGTSPKLWIYSTSNLA 54 usage_00172.pdb 1 DIVLTQSPAIMSAAPGDKVTMTCSASSS-V---SY--IHWYQQKSGTSPKRWIYDTSKLT 54 usage_00195.pdb 1 -QAVVTQESALTTSPGETVTLTCRSSTGAVTTSNY--ANWVQEKPDHLFTGLIGGTNNRA 57 usage_00202.pdb 1 -IVLTQSPAIMSASPGEKVTLTCSASST-I---TSSFLYWYQQKPGSSPKLWIYSTSNLA 55 usage_00231.pdb 1 --VSTQSPAIMSASPGEKVTMTCSASSS-R---S--YMQWYQQKPGTSPKRWIYDTSKLA 52 usage_00235.pdb 1 EVVLTQSPALMAASPGEKVTITCSVSSS-I---SSSNLHWYQQKSETSPKPWIYGTSNLA 56 usage_00238.pdb 1 QIVLTQSPAIMSASPGEKVTISCSARSS-V---SY--MYWYQQKSGSSPKPWIYRTSNLA 54 usage_00263.pdb 1 --VLTQSPAIMSASLGDRVTMTCTASSS-V---SSSYLHWYQQKPGSSPKLWIYSTSNLA 54 usage_00288.pdb 1 -LVMTQSPAIMSASPGEKVTMTCSASSS-V---NY--MHWYQQKSGTSPKRWIYDTSKLA 53 usage_00289.pdb 1 -LVMTQSPAIMSASPGEKVTMTCSASSS-V---NY--MHWYQQKSGTSPKRWIYDTSKLA 53 usage_00360.pdb 1 --VLTQSPAIMSASLGERVTMTCTASSS-V---SSSNLHWYQQKPGSSPKLWIYSTSNLA 54 usage_00386.pdb 1 --VLTQSPATMSASLGQRVSMSCSASSS-V---STSYFHWYQQKPGSSPKLWIYSTSNLA 54 qsp m G Vt C ss W QqK sp Iy t l usage_00025.pdb 55 SGVPVRFSGSGSGTSYSLTISRMEAEDAATYYCQQWSTYPLTFGAGTKLEL--- 105 usage_00039.pdb 55 SGVPARFSGSGSGTSYSLTISSMEAEDAASYFCLQWSSFPYTFGGGTKLELKRA 108 usage_00041.pdb 55 SGVPARFSGSGSGTSYSLTISSMEAEDAATYYCHQFHRSLTFGSGTKLEI---- 104 usage_00046.pdb 56 SGVPARFSGSGSGTSYSLTISSVEAEDAATYYCQQFSGYPLTFGSGTKLEM--- 106 usage_00057.pdb 53 SGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSTYPPTFGSGTKLEI--- 103 usage_00130.pdb 53 SGVPARFCGSGSGTSYSLTISSMEAEDAATYYCQQWSSNPLTFGAGTKLEL--- 103 usage_00134.pdb 55 SGVPARFSGSGSGTSYSLTISSMEAEDAASYFCLQWSSFPYTFGGGTKLEL--- 105 usage_00135.pdb 55 SGVPARFSGSGSGTSYSLTISSMEAEDAASYFCLQWSSFPYTFGGGTKLEL--- 105 usage_00145.pdb 55 SGVPVRFSGSGSGTSYSLTINTMEAEDAATYYCQQWSSHPQTFGGGTKLEI--- 105 usage_00146.pdb 55 SGVPVRFSGSGSGTSYSLTINTMEAEDAATYYCQQWSSHPQTFGGGTKLEI--- 105 usage_00147.pdb 55 SGVPVRFSGSGSGTSYSLTINTMEAEDAATYYCQQWSSHPQTFGGGTKLEI--- 105 usage_00170.pdb 54 SGVPARFRGSGSGTSYSLTISRMEAEDAATYYCQQRSGYPRTFGGGTKLEI--- 104 usage_00171.pdb 55 SGVPARFRGSGSGTSYSLTISRMEAEDAATYYCQQRSGYPRTFGGGTKLEIKRA 108 usage_00172.pdb 55 SGVPVRFSGSGSGTSYSLTINTMEAEDAATYYCQQWSSHPQTFGGGTKLEI--- 105 usage_00195.pdb 58 PGVPARFSGSLIGDKAALTITGGQTEDEAIYFCALWYSNHWVFGGGTALTVL-- 109 usage_00202.pdb 56 SGVPARFSGSGSGTSYSLTISSLEAEDGASYFCHQWETFPRTFGGGTKLEI--- 106 usage_00231.pdb 53 SGVPARFSGSGSGTSYSLTISSMEAEDAATYYCHQRS--SYTFGGGTKLEI--- 101 usage_00235.pdb 57 SGVPVRFSGSGSGTSYSLTISSMEAEDAATYYCQQWSHYPLTFGAGTKLEL--- 107 usage_00238.pdb 55 SGVPARFSGSGSGTSYSLTISSMEAEDAATYYCQQYHSYPPTFGGGTKLE---- 104 usage_00263.pdb 55 SGVPARFSGSGSGTSYSLTISSMEAEDAATYYCHQFHRSLTFGSGTKLE----- 103 usage_00288.pdb 54 SGVPARFSGSGSGTSYSLTISSMEAEDAATYYCQQWSYNPPTFGGGTKLEI--- 104 usage_00289.pdb 54 SGVPARFSGSGSGTSYSLTISSMEAEDAATYYCQQWSYNPPTFGGGTKLEI--- 104 usage_00360.pdb 55 SGVPARFSGSGSGTSYSLTISSMEAEDAATYYCHQYHRSPYTFGGGTKLEI--- 105 usage_00386.pdb 55 SGVPGRFSGSGSGTSYSLSISSMEAEDAATYYCHQFHRSPLTFGAGTKLEL--- 105 sGVP RF GSgsGtsysLtI eaED A Y C q #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################