################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:10:11 2021 # Report_file: c_0003_2.html ################################################################################################ #==================================== # Aligned_structures: 5 # 1: usage_00006.pdb # 2: usage_00008.pdb # 3: usage_00009.pdb # 4: usage_00010.pdb # 5: usage_00011.pdb # # Length: 436 # Identity: 228/436 ( 52.3%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 404/436 ( 92.7%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 32/436 ( 7.3%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00006.pdb 1 -----------DQIGN----THLRQFFADDPGRGRELTVSVGDLYIDYSKHRVTRETLAL 45 usage_00008.pdb 1 ATKLEATVAKLKKHWAESAPRDMRAAFSADPGRFGRYSLCLDDLLFDWSKCRVNDETMAL 60 usage_00009.pdb 1 ATKLEATVAKLKKHWAESAPRDMRAAFSADPGRFGRYSLCLDDLLFDWSKCRVNDETMAL 60 usage_00010.pdb 1 ATKLEATVAKLKKHWAESAPRDMRAAFSADPGRFGRYSLCLDDLLFDWSKCRVNDETMAL 60 usage_00011.pdb 1 -TKLEATVAKLKKHWAESAPRDMRAAFSADPGRFGRYSLCLDDLLFDWSKCRVNDETMAL 59 kkhwa rdmRaaFsaDPGRfgryslcldDLlfDwSKcRVndETmAL usage_00006.pdb 46 LIDLARTAHLEERRDQMFAGVHINTSEDRAVLHTALRLPRDAELVVDGQDVVTDVHAVLD 105 usage_00008.pdb 61 LKELAVAADVEGRRAAMFAGEHINNTEDRAVLHVALRDTSSKEVLVDGHNVLPDVKHVLD 120 usage_00009.pdb 61 LKELAVAADVEGRRAAMFAGEHINNTEDRAVLHVALRDTSSKEVLVDGHNVLPDVKHVLD 120 usage_00010.pdb 61 LKELAVAADVEGRRAAMFAGEHINNTEDRAVLHVALRDTSSKEVLVDGHNVLPDVKHVLD 120 usage_00011.pdb 60 LKELAVAADVEGRRAAMFAGEHINNTEDRAVLHVALRDTSSKEVLVDGHNVLPDVKHVLD 119 LkeLAvaAdvEgRRaaMFAGeHINntEDRAVLHvALRdtsskEvlVDGhnVlpDVkhVLD usage_00006.pdb 106 AMGAFTDRLRSGEWTGATGKRISTVVNIGIGGSDLGPVMVYQALRHYADAGISARFVSNV 165 usage_00008.pdb 121 RMAAFADGIRSGALKGATGRKITDIVNIGIGGSDLGPVMATLALAPYH-DEPRAHFVSNI 179 usage_00009.pdb 121 RMAAFADGIRSGALKGATGRKITDIVNIGIGGSDLGPVMATLALAPYH-DEPRAHFVSNI 179 usage_00010.pdb 121 RMAAFADGIRSGALKGATGRKITDIVNIGIGGSDLGPVMATLALAPYH-DEPRAHFVSNI 179 usage_00011.pdb 120 RMAAFADGIRSGALKGATGRKITDIVNIGIGGSDLGPVMATLALAPYH-DEPRAHFVSNI 178 rMaAFaDgiRSGalkGATGrkItdiVNIGIGGSDLGPVMatlALapYh deprAhFVSNi usage_00006.pdb 166 DPADLIATLADLDPATTLFIVASKTFSTLETLTNATAARRWLTDALGDAAVSRHFVAVST 225 usage_00008.pdb 180 DGAHIADTLSPLDPASTLIIVASKTFTTIETMTNAQTARKWVADTLGEAAVGAHFAAVST 239 usage_00009.pdb 180 DGAHIADTLSPLDPASTLIIVASKTFTTIETMTNAQTARKWVADTLGEAAVGAHFAAVST 239 usage_00010.pdb 180 DGAHIADTLSPLDPASTLIIVASKTFTTIETMTNAQTARKWVADTLGEAAVGAHFAAVST 239 usage_00011.pdb 179 DGAHIADTLSPLDPASTLIIVASKTFTTIETMTNAQTARKWVADTLGEAAVGAHFAAVST 238 DgAhiadTLspLDPAsTLiIVASKTFtTiETmTNAqtARkWvaDtLGeAAVgaHFaAVST usage_00006.pdb 226 NKRLVDDFGINTDNMFGFWDWVGGRYSVDSAIGLSLMTVIGRDAFADFLAGFHIIDRHFA 285 usage_00008.pdb 240 ALDKVAAFGIPEDRVFGFWDWVGGRYSVWSAIGLPVMIAVGPDNFRKFLAGAHAMDVHFR 299 usage_00009.pdb 240 ALDKVAAFGIPEDRVFGFWDWVGGRYSVWSAIGLPVMIAVGPDNFRKFLAGAHAMDVHFR 299 usage_00010.pdb 240 ALDKVAAFGIPEDRVFGFWDWVGGRYSVWSAIGLPVMIAVGPDNFRKFLAGAHAMDVHFR 299 usage_00011.pdb 239 ALDKVAAFGIPEDRVFGFWDWVGGRYSVWSAIGLPVMIAVGPDNFRKFLAGAHAMDVHFR 298 aldkVaaFGIpeDrvFGFWDWVGGRYSVwSAIGLpvMiavGpDnFrkFLAGaHamDvHFr usage_00006.pdb 286 TAPLESNAPVLLGLIGLWYSNFFGAQSRTVLPYSNDLSRFPAYLQQLTMESNGKSTRADG 345 usage_00008.pdb 300 DAPLEKNLPVMLGLIGYWHRAICGYGSRAIIPYDQRLSRLPAYLQQLDMESNGKSVTLDG 359 usage_00009.pdb 300 DAPLEKNLPVMLGLIGYWHRAICGYGSRAIIPYDQRLSRLPAYLQQLDMESNGKSVTLDG 359 usage_00010.pdb 300 DAPLEKNLPVMLGLIGYWHRAICGYGSRAIIPYDQRLSRLPAYLQQLDMESNGKSVTLDG 359 usage_00011.pdb 299 DAPLEKNLPVMLGLIGYWHRAICGYGSRAIIPYDQRLSRLPAYLQQLDMESNGKSVTLDG 358 dAPLEkNlPVmLGLIGyWhraicGygSRaiiPYdqrLSRlPAYLQQLdMESNGKSvtlDG usage_00006.pdb 346 SPVSADTGEIFWGEPGTNGQHAFYQLLHQGTRLVPADFIGFAQPLDDLPTAEGTG--SMH 403 usage_00008.pdb 360 KPVSGPTGPVVWGEPGTNGQHAFFQLLHQGTDTIPLEFIVAAKGHEPT-------LDHQH 412 usage_00009.pdb 360 KPVSGPTGPVVWGEPGTNGQHAFFQLLHQGTDTIPLEFIVAAKGHEPT-------LDHQH 412 usage_00010.pdb 360 KPVSGPTGPVVWGEPGTNGQHAFFQLLHQGTDTIPLEFIVAAKGHEPT-------LDHQH 412 usage_00011.pdb 359 KPVSGPTGPVVWGEPGTNGQHAFFQLLHQGTDTIPLEFIVAAKGHEPT-------LDHQH 411 kPVSgpTGpvvWGEPGTNGQHAFfQLLHQGTdtiPleFIvaAkghept hqH usage_00006.pdb 404 DLLMSNFFAQTQVLAF 419 usage_00008.pdb 413 EMLMANCLA------- 421 usage_00009.pdb 413 EMLMANCLAQSEALM- 427 usage_00010.pdb 413 EMLMANCLAQSEALM- 427 usage_00011.pdb 412 EMLMANCLAQSEALM- 426 emLMaNclA #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################