################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:04:27 2021 # Report_file: c_0248_20.html ################################################################################################ #==================================== # Aligned_structures: 4 # 1: usage_00157.pdb # 2: usage_00309.pdb # 3: usage_00316.pdb # 4: usage_00317.pdb # # Length: 139 # Identity: 25/139 ( 18.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 55/139 ( 39.6%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 25/139 ( 18.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00157.pdb 1 -VVVLAFYPAAFTSVSTKEMSTFRDSMAKFNEVNAVVIGISVDPPFSNKAFKEQNKINFT 59 usage_00309.pdb 1 GPVVLFFYPAAMTPGCTKEACHFRDLAKEFAEVRASRVGISTDPVRKQAKFAEVRRFDYP 60 usage_00316.pdb 1 -NIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFI 59 usage_00317.pdb 1 -NIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFI 59 VL FYP TpgsT Eas FRD vviG S D s k FkE k f usage_00157.pdb 60 IVSDFNREAVKAYGVAGELPILKGY---VLAKRSVFVIDKNGIVRYKWVSEDPTKEP--- 113 usage_00309.pdb 61 LLSDAQGTVAAQFGVKRGLL-----GKLMPVKRTTFVIDTDRKVLDVISSEF-----SMD 110 usage_00316.pdb 60 LVSDPDKKIRELYGAKGFI----------LPARITFVIDKKGIIRHIYNSQM-----NPA 104 usage_00317.pdb 60 LVSDPDKKIRELYGAKGFI----------LPARITFVIDKKGIIRHIYNSQM-----NPA 104 lvSD yG kg l R tFVIDk gi r S usage_00157.pdb 114 -NYDEIKDVVTKLSLE--- 128 usage_00309.pdb 111 AHADKALATLRAIR----- 124 usage_00316.pdb 105 NHVNEALKALKQIKEEEIS 123 usage_00317.pdb 105 NHVNEALKALKQIKEEE-- 121 h eal l i #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################