################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:01:47 2021 # Report_file: c_1484_152.html ################################################################################################ #==================================== # Aligned_structures: 5 # 1: usage_00516.pdb # 2: usage_00517.pdb # 3: usage_01886.pdb # 4: usage_01887.pdb # 5: usage_02472.pdb # # Length: 96 # Identity: 0/ 96 ( 0.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 27/ 96 ( 28.1%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 58/ 96 ( 60.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00516.pdb 1 -----------GTQTLQGELTLAL----------DKLAKNP-SNPQLLAEYQ-------- 30 usage_00517.pdb 1 --------FDDGTQTLQGELTLAL----------DKLAKNP-SNPQLLAEYQ-------- 33 usage_01886.pdb 1 -------------DNLQTQVTEAL----------DKLAAKP-SD--------PALLAAYQ 28 usage_01887.pdb 1 -----------GVDNLQTQVTEAL----------DKLAAKP-SD--------PALLAAYQ 30 usage_02472.pdb 1 SIKEQRAKLREAVNEVYKWISTLSDDELFQAGNRKWATTKAMWP--------VYKWIHIN 52 lq t al dkla p s usage_00516.pdb 31 SKLSEYTLYRNAQSNTVKVIKDVDAAIL-------E 59 usage_00517.pdb 34 SKLSEYTLYRNAQSNT--V-KVIKDVD--------- 57 usage_01886.pdb 29 SKLSEYNLYRNAQSNT--A-KAFKDID-AAIIQNF- 59 usage_01887.pdb 31 SKLSEYNLYRNAQSNT--A-KAFKDID-AAIIQNFR 62 usage_02472.pdb 53 TVAPFTNFRGKIRKWK--R-L--------------- 70 sklsey lyrnaqsnt k #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################