################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:20:08 2021 # Report_file: c_1422_141.html ################################################################################################ #==================================== # Aligned_structures: 5 # 1: usage_00002.pdb # 2: usage_00309.pdb # 3: usage_00516.pdb # 4: usage_00517.pdb # 5: usage_00519.pdb # # Length: 69 # Identity: 0/ 69 ( 0.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 11/ 69 ( 15.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 47/ 69 ( 68.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00002.pdb 1 YSG-----------KEGDKHTLSKK------------ELKELIQKELT-I--GSKL-QDA 33 usage_00309.pdb 1 -------------------------LDEVIALIRASENKADAKENLKVSY--D---FTEE 30 usage_00516.pdb 1 ---LEDFMEGLKVYDKAEN--GT-------------MLAAELAHVLLSL-GER---LTDI 38 usage_00517.pdb 1 ----EDFMEGLKVYDKAEN--GT-------------MLAAELAHVLLSL-GER---LTDI 37 usage_00519.pdb 1 ---LEDFMEGLKVYDKAEN--GT-------------MLAAELAHVLLSL-GER---LTDI 38 ael ll td usage_00002.pdb 34 EIVKLMDD- 41 usage_00309.pdb 31 QAEAIVTL- 38 usage_00516.pdb 39 ECEEIMRVC 47 usage_00517.pdb 38 ECEEIMR-- 44 usage_00519.pdb 39 ECEEIMRV- 46 e e im #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################