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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Wed Jan 20 23:13:53 2021
# Report_file: c_0039_12.html
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#====================================
# Aligned_structures: 5
#   1: usage_00039.pdb
#   2: usage_00040.pdb
#   3: usage_00047.pdb
#   4: usage_00061.pdb
#   5: usage_00157.pdb
#
# Length:        231
# Identity:       60/231 ( 26.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    192/231 ( 83.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           39/231 ( 16.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00039.pdb         1  PKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYG-YSVSAET   59
usage_00040.pdb         1  PKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYG-YSVSAET   59
usage_00047.pdb         1  PKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAET   60
usage_00061.pdb         1  PKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAET   60
usage_00157.pdb         1  YRRLNKSIENYLKLKDIGIVLGNGASEIIELSIS-LF----EKILIIVPSYAEYEINAKK   55
                           pkavienyaqYagvKpeqvlvsrGAdEgIELlIr fc    daILycpPtYg YsvsAet

usage_00039.pdb        60  IGVECRTVPTLDNWQLDLQGISDKLDGVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKA  119
usage_00040.pdb        60  IGVECRTVPTLDNWQLDLQGISDKLDGVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKA  119
usage_00047.pdb        61  IGVECRTVPTLDNWQLDLQGISDKLDGVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKA  120
usage_00061.pdb        61  IGVECRTVPTLDNWQLDLQGISDKLDGVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKA  120
usage_00157.pdb        56  HGVSVVFSYLDENMCIDYEDIISKIDDVDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKK  115
                           iGVecrtvptldNwqlDlqgIsdKlDgVkvVyvcsPNNPtGqLINpqdFrtlLeLtrgKa

usage_00039.pdb       120  IVVADEAYIEFC--PQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLA-NEEVINLL  176
usage_00040.pdb       120  IVVADEAYIEFC--PQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLA-NEEVINLL  176
usage_00047.pdb       121  IVVADEAYIEFC--PQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLA-NEEVINLL  177
usage_00061.pdb       121  IVVADEAYIEFC--PQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLA-NEEVINLL  177
usage_00157.pdb       116  TIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKI  175
                           ivvaDEAyIEFc  PqaSlaGwlaeYphLaIlRtlsKaFAlaGlRcGftla NeEvinll

usage_00039.pdb       177  -KVIAPYPLSTPVADIAAQALSP-QGIVA-RERVAQIIAEREYLIAALKEI  224
usage_00040.pdb       177  -KVIAPYPLSTPVADIAAQALSP-QGIVA-RERVAQIIAEREYLIAALKEI  224
usage_00047.pdb       178  MKVIAPYPLSTPVADIAAQALSP-QGIVAMRERVAQIIAEREYLIAALKEI  227
usage_00061.pdb       178  MKVIAPYPLSTPVADIAAQALS-----------------------------  199
usage_00157.pdb       176  KAKQNPWNINCFAEMAAINCLKDTNY--I-EESLLWIKKERKRFIEELNKI  223
                            kviaPyplstpvadiAaqaLs                             


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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