################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:08:41 2021 # Report_file: c_0615_19.html ################################################################################################ #==================================== # Aligned_structures: 9 # 1: usage_00010.pdb # 2: usage_00027.pdb # 3: usage_00028.pdb # 4: usage_00029.pdb # 5: usage_00066.pdb # 6: usage_00155.pdb # 7: usage_00156.pdb # 8: usage_00179.pdb # 9: usage_00198.pdb # # Length: 144 # Identity: 6/144 ( 4.2%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 15/144 ( 10.4%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 57/144 ( 39.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00010.pdb 1 ---IERTIAINFTGLVNTTTAILDFWDKRKGG-PGGIIANICSVTGFNAIHQVPVYSASK 56 usage_00027.pdb 1 MSDFEWAFKLNLFSLFRLSQLAAPHMQ----KAGGGAILNISSMAGENTNVRMASYGSSK 56 usage_00028.pdb 1 MSDFEWAFKLNLFSLFRLSQLAAPHMQ----KAGGGAILNISSMAGENTNVRMASYGSSK 56 usage_00029.pdb 1 MSDFEWAFKLNLFSLFRLSQLAAPHMQ----KAGGGAILNISSMAGENTNVRMASYGSSK 56 usage_00066.pdb 1 ---------------------VTAKLL----KRGAGSVVNVSSINALRGHSGLTVYSATK 35 usage_00155.pdb 1 ----------------------RPLL-----AQRGGSILNIASMYSTFGSADRPAYSASK 33 usage_00156.pdb 1 LATFERVLRLNLSAAMLASQLARPLLA----Q-RGGSILNIASMYSTFGSADRPAYSASK 55 usage_00179.pdb 1 ----------------------LAPMK----ARNCGTIINISSIAGKKTFPDHAAYCGTK 34 usage_00198.pdb 1 EAAWQKTIDINLTGVYLCDKYAIDQMR----SQGGGVIVNCGSIHSHVGKSGVTAYAAAK 56 G i N S Y K usage_00010.pdb 57 AAVVSFTNSLAKLAPITGVTAYSINPGITRTP----LVHTFNSWLDVE-P-RVAELLLSH 110 usage_00027.pdb 57 AAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTD-V-L-------------TPEIERAMLKH 101 usage_00028.pdb 57 AAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDAV-L-------------TPEIERAMLKH 102 usage_00029.pdb 57 AAVNHLTRNIAFDVGPMGIRVNAIAPGAIKT-------------------PEIERAMLKH 97 usage_00066.pdb 36 AAMDGLTRSLAKELGPRGIRVNSVSPGYFSSD-------------------QTLSRIERR 76 usage_00155.pdb 34 GAIVQLTRSLACEYAAERIRVNAIAPGWIDTP--KA-------------DVEATRRIMQR 78 usage_00156.pdb 56 GAIVQLTRSLACEYAAERIRVNAIAPGWIDT------------------DVEATRRIMQR 97 usage_00179.pdb 35 FAVHAISENVREEVAASNVRVMTIAPSAVKTE----LLSHT-------TSQQIKDGYDAW 83 usage_00198.pdb 57 GGVKLLTQTLAIDYGPQNIRVNAVCPGYIDT----I-------------PDDKKQALVAL 99 a t a rv Pg t usage_00010.pdb 111 -----PTQTSEQCGQNFVKAIEAN 129 usage_00027.pdb 102 TP-LGRLGEAQDIANAALFL---- 120 usage_00028.pdb 103 TP-LGRLGEAQDIANAALFLCS-- 123 usage_00029.pdb 98 TP-LGRLGEAQDIANAALFLCS-- 118 usage_00066.pdb 77 TP-LGRLGTQQEVADLILYLV--- 96 usage_00155.pdb 79 TP-LARWGEAPEVASAAAFLCG-- 99 usage_00156.pdb 98 TP-LARWGEAPEVASAAAFLCG-- 118 usage_00179.pdb 84 RVDMGGVLAADDVARAVLFAY--- 104 usage_00198.pdb 100 HP-MGRLGRAEEVANAVLFLAS-- 120 a #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################