################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:50:49 2021 # Report_file: c_0048_21.html ################################################################################################ #==================================== # Aligned_structures: 8 # 1: usage_00011.pdb # 2: usage_00044.pdb # 3: usage_00070.pdb # 4: usage_00071.pdb # 5: usage_00078.pdb # 6: usage_00115.pdb # 7: usage_00116.pdb # 8: usage_00173.pdb # # Length: 287 # Identity: 8/287 ( 2.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 27/287 ( 9.4%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 91/287 ( 31.7%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00011.pdb 1 KTMFISGGSRGIGLAIAKRVAADGANVALVAK---SA-EPHPKLPGTIYTAAKEI-EE-- 53 usage_00044.pdb 1 KTAFVTGGSRGIGAAIAKRLALEGAAVALTYV---NAAER------A-QAVVSEI-EQ-- 47 usage_00070.pdb 1 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASR---NL-EE------A-SEAAQKL-TEK- 47 usage_00071.pdb 1 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASR---NL-EE------A-SEAAQKL-TEK- 47 usage_00078.pdb 1 KVTAITGGGGGIGFAAAEAIAEAGGDVALLYR---SA-PN------M-EERSAELAKR-- 47 usage_00115.pdb 1 TTALVTGGTKGIGHAIVEELVGFGARVYTCSR---NE-AE------L-RKCLQEW-EN-- 46 usage_00116.pdb 1 GLAIITGASQGIGAVIAAGLATDGYRVVLIAR---SK-QN------L-EKVHDEI-R--S 46 usage_00173.pdb 1 PVCVITGSASGIGAATALRFAQAGWSVAIGNFDDSTR-DA------A-STVEALC-RD-- 49 tG G G a a G V usage_00011.pdb 54 -A-GGQALPIVGDIRDGDAVAAAVAKTVEQFG-GIDICVNNASAI-NLGSIE---EVPLK 106 usage_00044.pdb 48 -A-GGRAVAIRADNRDAEAIEQAIRETVEALG-GLDILVNSAGIW-HSAPLE---ETTVA 100 usage_00070.pdb 48 -Y-GVETMAFRCDVSNYEEVKKLLEAVKEKFG-KLDTVVNAAGIN-RRHPAE---EFPLD 100 usage_00071.pdb 48 -Y-GVETMAFRCDVSNYEEVKKLLEAVKEKFG-KLDTVVNAAGIN-RRHPAE---EFPLD 100 usage_00078.pdb 48 -F-GVKVKSYQCEVTEHESVKQAIEAVEKDFG-RLDCYIANAGGG-VPGSIN-P-DYPLE 101 usage_00115.pdb 47 -L-KYDVTGSVCDVSSRTEREKLAEEVSSVFNGKLNILINNAGGY-VNKPID---GFTAE 100 usage_00116.pdb 47 NKHVQEPIVLPLDITDCTKADTEIKDIHQKYG-AVDILVNA-AAFDGSLSE------PVD 98 usage_00173.pdb 50 -A-GAQTLIFDADVGKDADCRHAVDMVASRWQ-RIDALINCAGTT-RVIPHNAFDQIDDF 105 d d n usage_00011.pdb 107 RFDLMNGIQVRGTYAVSQSCIPHMKGRD----NPHILTLSPPIR----L-E-PKWLR--P 154 usage_00044.pdb 101 DFDEV-AVNFRAPFVAIRSASRHL--GD----GGRIITIGSN-LAELVP-W-PG-----I 145 usage_00070.pdb 101 EFRQVIEVNLFGTYYVCREAFSLLRESD----NPSIINIGSL-TVEEVT-M-PN-----I 148 usage_00071.pdb 101 EFRQVIEVNLFGTYYVCREAFSLLRESD----NPSIINIGSL-TVEEVT-M-PN-----I 148 usage_00078.pdb 102 AWHKTQSVNLHSTFYAARECARIFKAQG----SGSFIATTSI-SARIVN-VPYD-----Q 150 usage_00115.pdb 101 DFSFLVAVNLESAFHLCQLAHPMLKASG----TGSIVHISSC-CA-QIA-I-PG-----H 147 usage_00116.pdb 99 NFRKI-EINVIAQYGILKTVTEI-KVQK----NGYIFNVAS----------------ADG 136 usage_00173.pdb 106 EFERVYRVNLIGLYQMTRAAVPLLRESASATRSTSVVNVSSL-AGLNGTGS--------S 156 f n s usage_00011.pdb 155 TPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVATAAVQ----------------- 197 usage_00044.pdb 146 SLYSASKAALAGLTKGLARDLGPRGITVNIVHPGST-DTDN-P-----ADGDHAEAQRER 198 usage_00070.pdb 149 SAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWY-RTKMTEAVFSD--PEKLDYMLKR 205 usage_00071.pdb 149 SAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWY-RTKMTEAVFSD--PEKLDYMLKR 205 usage_00078.pdb 151 PAYNSSKAAVVHFCRSLARDWRNF-ARVNTISPGFF-DTPMG---PSD--KAVEDVLYQK 203 usage_00115.pdb 148 SIYSSTKGAINQLTRNLACEWAKDNIRTNSIAPGAI-RTPGTESFVID--KDALDREVSR 204 usage_00116.pdb 137 GIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWV-NTDA------------------- 176 usage_00173.pdb 157 IAYAASKGAVNTLTLSLARNLAPH-IRVNALAPGMV-DDG----------GV-LSRMTES 203 Y K la i n Pg t usage_00011.pdb 198 N-LLGGDEAM-A-R---SRKPEVYADAAYVVLNKPS-SYTGNTLLCE 237 usage_00044.pdb 199 IA---------TGS---YGEPQDIAGLVAWLAGPQGKFVTGASLTID 233 usage_00070.pdb 206 IP---------LGR---TGVPEDLKGVAVFLASEEAKYVTGQIIFVD 240 usage_00071.pdb 206 IP---------LGR---TGVPEDLKGVAVFLASEEAKYVTGQIIFVD 240 usage_00078.pdb 204 SV---------LGR---AGDVKELKAAYLYLASNASTYTTGADLLI- 237 usage_00115.pdb 205 VP---------FGR---IGEPEEVASLAAFLCMPSASYITGQVICVD 239 usage_00116.pdb 177 K-KA------GTPFKDEEIQPDDLLNTIRCLLNLSE-NVCIKDIVFE 215 usage_00173.pdb 204 AP---------LKR---VSRPAEIAELAWFLTA-HAPAITGQVIAAE 237 p l tg #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################