################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:30:47 2021 # Report_file: c_0112_8.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00055.pdb # 2: usage_00085.pdb # 3: usage_00086.pdb # 4: usage_00087.pdb # 5: usage_00088.pdb # 6: usage_00092.pdb # 7: usage_00105.pdb # 8: usage_00120.pdb # 9: usage_00156.pdb # 10: usage_00200.pdb # 11: usage_00272.pdb # # Length: 109 # Identity: 37/109 ( 33.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 57/109 ( 52.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 14/109 ( 12.8%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00055.pdb 1 YELTQPPSVSVSPGQTVNITCSGDTLGDKYVCWYQQKPGQSPVLVIYQDTKRPSGIPERF 60 usage_00085.pdb 1 YVLTQPPSVSVAPGQTARITCGGTNIGDISVHWYQQRPGQAPLVVVYDDSDRPSGIPERF 60 usage_00086.pdb 1 YVLTQPPSVSVAPGQTARITCGGTNIGDISVHWYQQRPGQAPLVVVYDDSDRPSGIPERF 60 usage_00087.pdb 1 --LTQPPSVSVAPGQTARITCGGTNIGDISVHWYQQRPGQAPLVVVYDDSDRPSGIPERF 58 usage_00088.pdb 1 --LTQPPSVSVAPGQTARITCGGTNIGDISVHWYQQRPGQAPLVVVYDDSDRPSGIPERF 58 usage_00092.pdb 1 YVLTQPPSVSVSPGQTARITCSGDKLGDKYASWYQQKPGQSPVLVIYQDNKRPSEIPARF 60 usage_00105.pdb 1 SVLTQPPSVSVAPGQTARISCSGDNIGSYYVHWYQQKPGQAPVLVIYEDSERPSGIPERF 60 usage_00120.pdb 1 YELTQPPSVSVAPGKTARITCGGNNIGSKSVHWYQQKPGQAPVLVVYDDSDRPSGIPERF 60 usage_00156.pdb 1 SVLTQPPSVSGAPGQRVTISCTG------DVHWYQLLPGAAPKLLISHNTHRPSGVPDRF 54 usage_00200.pdb 1 YTLTQPPLVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHF 60 usage_00272.pdb 1 -VLTQPPSVSVAPGKTARITCGGNNIANKNVHWYQQKPGQAPVLVIYYDDDRPSGIPDRF 59 LTQPPsVSv pG I C G v WYQq pGq P v y d RPSgiP rF usage_00055.pdb 61 SGSNSGDTATLTVSGTQAMDEADYYCQAWDSSSFVFGTG--TKVTV--- 104 usage_00085.pdb 61 SGSNSGNTATLTISRVEAGDEADYYCQVWDDSINAYVFGTGTKVTVLRT 109 usage_00086.pdb 61 SGSNSGNTATLTISRVEAGDEADYYCQVWDDSINAYVFGTGTKVTV--- 106 usage_00087.pdb 59 SGSNSGNTATLTISRVEAGDEADYYCQVWDDSINAYVFGTGTKVTV--- 104 usage_00088.pdb 59 SGSNSGNTATLTISRVEAGDEADYYCQVWDDSINAYVFGTGTKVTV--- 104 usage_00092.pdb 61 SGSNSGNTATLTISGAQAMDEADYYCQAWDSNTGVFGTG--TKLTVLRT 107 usage_00105.pdb 61 SGSNSGNTATLTISGTQAEDEADYYCSSYDDPNFQVFGGGTKLTV---- 105 usage_00120.pdb 61 SGSNSGNTATLTISRVEAGDEADYYCQVWDSSSDYVFGTGTKVTV---- 105 usage_00156.pdb 55 SGSKSGASASLAITGLQAEDEADYYCQSHDSSLSAVVFGGGTKLTV--- 100 usage_00200.pdb 61 SGSNSGNMATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQ 109 usage_00272.pdb 60 SGSNSGNTATLTISRVEAGDEADYYCQVWDSNSDHVVFGGGTQLTV--- 105 SGSnSG AtLtis A DEADYYCq D g #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################