################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 03:13:17 2021 # Report_file: c_0513_52.html ################################################################################################ #==================================== # Aligned_structures: 25 # 1: usage_00057.pdb # 2: usage_00102.pdb # 3: usage_00103.pdb # 4: usage_00167.pdb # 5: usage_00231.pdb # 6: usage_00232.pdb # 7: usage_00233.pdb # 8: usage_00234.pdb # 9: usage_00235.pdb # 10: usage_00236.pdb # 11: usage_00237.pdb # 12: usage_00238.pdb # 13: usage_00239.pdb # 14: usage_00240.pdb # 15: usage_00241.pdb # 16: usage_00242.pdb # 17: usage_00243.pdb # 18: usage_00244.pdb # 19: usage_00393.pdb # 20: usage_00394.pdb # 21: usage_00557.pdb # 22: usage_00879.pdb # 23: usage_00884.pdb # 24: usage_00885.pdb # 25: usage_00894.pdb # # Length: 154 # Identity: 34/154 ( 22.1%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 36/154 ( 23.4%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 90/154 ( 58.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00057.pdb 1 -DLV-EAAKTGAVINVKKPQFLSPS-QGNIVEKIEECGNDKIILCDRGTNFGYDNLIVD- 56 usage_00102.pdb 1 ----------------------SPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDM 38 usage_00103.pdb 1 ----------------------SPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDM 38 usage_00167.pdb 1 ----------------------SPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDM 38 usage_00231.pdb 1 TDLVVAMAKTGNVVNIKKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDM 60 usage_00232.pdb 1 ----------------------SPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDM 38 usage_00233.pdb 1 ----------------------SPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDM 38 usage_00234.pdb 1 ----------------------SPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDM 38 usage_00235.pdb 1 ----------------------SPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDM 38 usage_00236.pdb 1 ----------------------SPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDM 38 usage_00237.pdb 1 ----------------------SPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDM 38 usage_00238.pdb 1 ----------------------SPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDM 38 usage_00239.pdb 1 ----------------------SPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDM 38 usage_00240.pdb 1 ----------------------SPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDM 38 usage_00241.pdb 1 TDLVVAMAKTGNVVNIKKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDM 60 usage_00242.pdb 1 ----------------------SPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDM 38 usage_00243.pdb 1 ----------------------SPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDM 38 usage_00244.pdb 1 ----------------------SPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDM 38 usage_00393.pdb 1 -----------------------PQEMKHILTKCEEAGNDRLILCERGSSFGYNNLVVDM 37 usage_00394.pdb 1 ----------------------APQEMKHILTKCEEAGNDRLILCERGSSFGYNNLVVDM 38 usage_00557.pdb 1 -----------------------PGQMGNIVDKFKEGGNEKVILCDRGANFGYDNLVVDM 37 usage_00879.pdb 1 ----------------------SPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDM 38 usage_00884.pdb 1 ---------------------------GNIVDKFKEGGNEKVILCDRGANFGYDNLVVDM 33 usage_00885.pdb 1 ---------------------------GNIVDKFKEGGNEKVILCDRGANFGYDNLVVDM 33 usage_00894.pdb 1 ----------------------SPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDM 38 I K E GN ILC RG FGY NLvVD usage_00057.pdb 57 LGFSV-KKASKGSPVIFDVTHSL---Q----R-AQVTELARSGLAVG------------- 94 usage_00102.pdb 39 LGFGVMKQTCGNLPVIFDVTHSL---G----RRAQALDLALAGMATRLAGLFLESHPDP- 90 usage_00103.pdb 39 LGFGVMKQTCGNLPVIFDVTHSLQGG-----RRAQALDLALAGMATRLAGLFLESH---- 89 usage_00167.pdb 39 LGFGVMKQTCGNLPVIFDVTHSL---Q-----RAQALDLALAGMATRLAGLFLESHPD-- 88 usage_00231.pdb 61 LGFGVMKQTCGNLPVIFDVTHSL---Q--G-RRAQALDLALAGMA--------------- 99 usage_00232.pdb 39 LGFGVMKQTCGNLPVIFDVTHSLQ--TRDG-RRAQALDLALAGMATRLAGLFLESHP--- 92 usage_00233.pdb 39 LGFGVMKQTCGNLPVIFDVTHSLQ--TR-G-RRAQALDLALAGMATRLAGLFLESHPD-- 92 usage_00234.pdb 39 LGFGVMKQTCGNLPVIFDVTHSLQ--TR-G-RRAQALDLALAGMATRLAGLFLES----- 89 usage_00235.pdb 39 LGFGVMKQTCGNLPVIFDVTHSLQ--TR-G-RRAQALDLALAGMATRLAGLFLESHP--- 91 usage_00236.pdb 39 LGFGVMKQTCGNLPVIFDVTHSLQ--TR-G-RRAQALDLALAGMATRLAGLFLES----- 89 usage_00237.pdb 39 LGFGVMKQTCGNLPVIFDVTHSLQ--TR---RRAQALDLALAGMATRLAGLFLESH---- 89 usage_00238.pdb 39 LGFGVMKQTCGNLPVIFDVTHSLQ--TR-G-RRAQALDLALAGMATRLAGLFLE------ 88 usage_00239.pdb 39 LGFGVMKQTCGNLPVIFDVTHSLQ--TR---RRAQALDLALAGMATRLAGLFLES----- 88 usage_00240.pdb 39 LGFGVMKQTCGNLPVIFDVTHSL---Q----RRAQALDLALAGMATRLAGLFLESHP--- 88 usage_00241.pdb 61 LGFGVMKQTCGNLPVIFDVTHSLQ--T---RRRAQALDLALAGMA--------------- 100 usage_00242.pdb 39 LGFGVMKQTCGNLPVIFDVTHSL---Q--G-RRAQALDLALAGMATRLAGLFLE------ 86 usage_00243.pdb 39 LGFGVMKQTCGNLPVIFDVTHSL---Q-----RAQALDLALAGMATRLAGLFLESH---- 86 usage_00244.pdb 39 LGFGVMKQTCGNLPVIFDVTHSLQ--TR----RAQALDLALAGMATRLAGLFLES----- 87 usage_00393.pdb 38 LGFGIMKQ-F-EYPVFFDVTHAL---Q----R-AQVTDLAKAGLSQKLAGLFLEA----- 82 usage_00394.pdb 39 LGFGIMKQ-F-EYPVFFDVTHAL---------RAQVTDLAKAGLSQKLAGLFLEAHPDP- 86 usage_00557.pdb 38 LGFSIMKKVSGNSPVIFDVTHAL---Q-----RAQVAELARAGMAVGLAGLFIEAHPDPE 89 usage_00879.pdb 39 LGFGVMKQTCGNLPVIFDVTHSL---G----RRAQALDLALAGMATRLAGLFLES----- 86 usage_00884.pdb 34 LGFSIMKKVSGNSPVIFDVTHAL---Q-----RAQVAELARAGMAVGLAGLFIEAHPDP- 84 usage_00885.pdb 34 LGFSIMKKVSGNSPVIFDVTHAL---Q-----RAQVAELARAGMAVGLAGLFIEAHPDP- 84 usage_00894.pdb 39 LGFGVMKQTCGNLPVIFDVTHSLQ--TR---RRAQALDLALAGMATRLAGLFLESH---- 89 LGF K PV FDVTH L AQ LA aG usage_00057.pdb ---------------------------------- usage_00102.pdb 91 --------SALPLHLLEDFLIRIKALDDLIKSQ- 115 usage_00103.pdb 90 ---------ALPLHLLEDFLIRIKALDDLIKSQP 114 usage_00167.pdb 89 --------SALPLHLLEDFLIRIKALDDLIKSQP 114 usage_00231.pdb ---------------------------------- usage_00232.pdb 93 ---------ALPLHLLEDFLIRIKALDDLIKSQP 117 usage_00233.pdb 93 ---------ALPLHLLEDFLIRIKALDDLIKSQP 117 usage_00234.pdb 90 ------------LHLLEDFLIRIKALDDLIKSQ- 110 usage_00235.pdb 92 ---------ALPLHLLEDFLIRIKALDDLIKSQP 116 usage_00236.pdb 90 ------------LHLLEDFLIRIKALDDLIKSQ- 110 usage_00237.pdb 90 ---------ALPLHLLEDFLIRIKALDDLIKSQP 114 usage_00238.pdb 89 ------------LHLLEDFLIRIKALDDLIKSQ- 109 usage_00239.pdb 89 -------------HLLEDFLIRIKALDDLIKSQP 109 usage_00240.pdb 89 ---------ALPLHLLEDFLIRIKALDDLIKSQP 113 usage_00241.pdb ---------------------------------- usage_00242.pdb 87 ------------LHLLEDFLIRIKALDDLIKSQ- 107 usage_00243.pdb 87 ---------ALPLHLLEDFLIRIKALDDLIKSQP 111 usage_00244.pdb 88 ---------ALPLHLLEDFLIRIKALDDLIKSQP 112 usage_00393.pdb 83 --------------KLEAFLSQLKQLDELIKSF- 101 usage_00394.pdb 87 ------E---LRLNKLEAFLSQLKQLDELIKSF- 110 usage_00557.pdb 90 HAKCDG-PSALPLAKLEPFLKQMKAIDDLVKGF- 121 usage_00879.pdb 87 --------SALPLHLLEDFLIRIKALDDLIKSQP 112 usage_00884.pdb 85 ------EPSALPLAKLEPFLKQMKAIDDLVKGF- 111 usage_00885.pdb 85 --------SALPLAKLEPFLKQMKAIDDLVKGF- 109 usage_00894.pdb 90 ---------ALPLHLLEDFLIRIKALDDLIKSQP 114 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################