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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Wed Jan 20 23:13:00 2021
# Report_file: c_1109_2.html
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#====================================
# Aligned_structures: 5
#   1: usage_00164.pdb
#   2: usage_00165.pdb
#   3: usage_00301.pdb
#   4: usage_00345.pdb
#   5: usage_00346.pdb
#
# Length:        122
# Identity:       33/122 ( 27.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    109/122 ( 89.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           13/122 ( 10.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00164.pdb         1  -LKRGFAALMSAYNAQRVGAGAVALGIAQCAFEEGVAYLKRREQFGRPLAEFQGLQWMVA   59
usage_00165.pdb         1  -LKRGFAALMSAYNAQRVGAGAVALGIAQCAFEEGVAYLKRREQFGRPLAEFQGLQWMVA   59
usage_00301.pdb         1  ----GFLQIMQQFQAERLGIAVQAYATAGRALDLAKSWARERETFGRPLTGRQIIRHKLA   56
usage_00345.pdb         1  GLKRGFAALMSAYNAQRVGAGAVALGIAQCAFEEGVAYLKRREQFGRPLAEFQGLQWMVA   60
usage_00346.pdb         1  GLKRGFAALMSAYNAQRVGAGAVALGIAQCAFEEGVAYLKRREQFGRPLAEFQGLQWMVA   60
                               GFaalMsaynAqRvGagavAlgiAqcAfeegvaylkrREqFGRPLaefQglqwmvA

usage_00164.pdb        60  DMSVQLEAARLMLRSAAVSG-----ETFPDINKAAQAKIFAAETANKVTNDALQFFGSSG  114
usage_00165.pdb        60  DMSVQLEAARLMLRSAAVSG-----ETFPDINKAAQAKIFAAETANKVTNDALQFFGSSG  114
usage_00301.pdb        57  EMARQVDVACTYTRAVMQRWLAGED----VVAEVSMAKNTAVYACDYVVNEAVQIFGGMG  112
usage_00345.pdb        61  DMSVQLEAARLMLRSAAVSG-----ETFPDINKAAQAKIFAAETANKVTNDALQFFGSSG  115
usage_00346.pdb        61  DMSVQLEAARLMLRSAAVSG-----ETFPDINKAAQAKIFAAETANKVTNDALQFFGSSG  115
                           dMsvQleaArlmlRsaavsg         dinkaaqAKifAaetankVtNdAlQfFGssG

usage_00164.pdb       115  YG  116
usage_00165.pdb       115  YG  116
usage_00301.pdb       113  YM  114
usage_00345.pdb       116  YG  117
usage_00346.pdb       116  YG  117
                           Yg


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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