################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:08:07 2021 # Report_file: c_1396_91.html ################################################################################################ #==================================== # Aligned_structures: 9 # 1: usage_00157.pdb # 2: usage_00519.pdb # 3: usage_00520.pdb # 4: usage_00550.pdb # 5: usage_00872.pdb # 6: usage_00966.pdb # 7: usage_01114.pdb # 8: usage_01172.pdb # 9: usage_01475.pdb # # Length: 117 # Identity: 35/117 ( 29.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 35/117 ( 29.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 71/117 ( 60.7%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00157.pdb 1 YVPLVIMVFVYSRVFQEAKRQLQK-ID---------KSEGR-----------CLKEHKAL 39 usage_00519.pdb 1 YIPLLIMIFVALRVYREAKEQI--------------------------------REHKAL 28 usage_00520.pdb 1 YIPLLIMIFVALRVYREAKEQI--------------------------------REHKAL 28 usage_00550.pdb 1 YVPLVIMVFVYSRVFQEAKRQ--------------------LQ------K-FALKEHKAL 33 usage_00872.pdb 1 YIPLLIMIFVALRVYREAKEQIRK-IDRASKRKRVM----------------LMREHKAL 43 usage_00966.pdb 1 YVPLVIMVFVYSRVFQEAKRQLQK-ID---------------KSEGRFHVKFCLKEHKAL 44 usage_01114.pdb 1 YVPLVIMVFVYSRVFQEAKRQ--------------------LQ------K-FALKEHKAL 33 usage_01172.pdb 1 YIPLLIMIFVALRVYREAKEQIRKR--KT---SRVM----------------LMREHKAL 39 usage_01475.pdb 1 YVPLVIMVFVYSRVFQEAKRQLQK-I----------------D------K-FCLKEHKAL 36 Y PL IM FV RV EAK Q EHKAL usage_00157.pdb 40 KTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIY--- 93 usage_00519.pdb 29 KTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVP------------------------- 60 usage_00520.pdb 29 KTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVP------------------------- 60 usage_00550.pdb 34 KTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIY--- 87 usage_00872.pdb 44 KTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYCRS 100 usage_00966.pdb 45 KTLGIIMGTFTLCWLPFFI---------------VYILLNWIGYVNSGFNPLIYCR- 85 usage_01114.pdb 34 KTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFN------- 83 usage_01172.pdb 40 KTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVP------------------------- 71 usage_01475.pdb 37 KTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCRS 93 KTLGIIMG FTLCWLPFF #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################