################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:54:50 2021 # Report_file: c_0023_1.html ################################################################################################ #==================================== # Aligned_structures: 13 # 1: usage_00003.pdb # 2: usage_00004.pdb # 3: usage_00005.pdb # 4: usage_00008.pdb # 5: usage_00022.pdb # 6: usage_00023.pdb # 7: usage_00024.pdb # 8: usage_00025.pdb # 9: usage_00026.pdb # 10: usage_00027.pdb # 11: usage_00029.pdb # 12: usage_00037.pdb # 13: usage_00045.pdb # # Length: 345 # Identity: 55/345 ( 15.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 70/345 ( 20.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 98/345 ( 28.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00003.pdb 1 HPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMV----RFVNSGTEACMAVL 56 usage_00004.pdb 1 HPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMV----RFVNSGTEACMAVL 56 usage_00005.pdb 1 HPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMV----RFVNSGTEACMAVL 56 usage_00008.pdb 1 -PEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMV----RFVNSGTEACMAVL 55 usage_00022.pdb 1 DREVLDAVADQFAKGHMTGLPHELDARAGALIAELVPGVEQV----RFANSGTEAVASAL 56 usage_00023.pdb 1 DREVLDAVADQFAKGHMTGLPHELDARAGALIAELVPGVEQV----RFANSGTEAVASAL 56 usage_00024.pdb 1 HPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMV----RFVNSGTEACMAVL 56 usage_00025.pdb 1 -PEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMV----RFVNSGTEACMAVL 55 usage_00026.pdb 1 -DRVVEALKAVAERGTSFGAPTEIENKLAKLVIERVPSIEIV----R-VNSGTEAT-SAL 53 usage_00027.pdb 1 -DRVVEALKAVAERGTSFGAPTEIENKLAKLVIERVPSIEIV----R-VNSGTEAT-SAL 53 usage_00029.pdb 1 HPHITKAITTAAENGVLYGTPTALEVKFAKL-KEA-PALDKV----RFVNSGTEAV-TTI 53 usage_00037.pdb 1 -PAIRQAVIEAVERGLSFGAPTEE--VKAQLVTDL-------VPTDVRVNSGTEAT-SAI 49 usage_00045.pdb 1 -PEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMV----RFVNSGTEACMAVL 55 A G G P r NSGTEA usage_00003.pdb 57 RIMRAYTGRDKIIKFEGCYHGHADMFLVK----------AGSGVATLGLPSSPGVPKKTT 106 usage_00004.pdb 57 RLMRAYTGRDKIIKFEGCYHGHADMFLVK----------AGSGVATLGLPSSPGVPKKTT 106 usage_00005.pdb 57 RLMRAYTGRDKIIKFEGCYHGHADMFLVK----------AGSGVATLGLPSSPGVPKKTT 106 usage_00008.pdb 56 RLMRAYTGRDKIIKFEGCYHGHADMFLVK----------AGSGVATLGLPSSPGVPKKTT 105 usage_00022.pdb 57 RLARATTGRTLVVTFEGHYHGWSETVLRAGT-----RPTDV-------VPGALGMIPEAL 104 usage_00023.pdb 57 RLARATTGRTLVVTFEGHYHGWSETVLRA--GKTALRPTDV-------VPGALGMIPEAL 107 usage_00024.pdb 57 RIMRAYTGRDKIIKFEGCYHGHADMFLVK----------AGSGVATLGLPSSPGVPKKTT 106 usage_00025.pdb 56 RIMRAYTGRDKIIKFEGCYHGHADMFLVK----------AGSGVATLGLPSSPGVPKKTT 105 usage_00026.pdb 54 RLARGYTGRNKILKFIGCYHGHGDSLLIK----------AGSGV-----PDSPGVPEGVA 98 usage_00027.pdb 54 RLARGYTGRNKILKFIGCYHGHGDSLLIK----------A--------LPDSPGVPEGVA 95 usage_00029.pdb 54 RVARAYTGRTKI-KFAGCYHGHSDLVLVA---------L-G-------TPDSAGVPQSIA 95 usage_00037.pdb 50 RLARGYTGRDKIIKFEGCYHG----------------------------PNSPGVPTDFA 81 usage_00045.pdb 56 RIMRAYTGRDKIIKFEGCYHGHADMFLVK----------AGSGVATLGLPSSPGVPKKTT 105 R R TGR F G YHG P G usage_00003.pdb 107 ANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDAL 166 usage_00004.pdb 107 ANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDAL 166 usage_00005.pdb 107 ANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDAL 166 usage_00008.pdb 106 ANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDAL 165 usage_00022.pdb 105 AHTVQLGWNDPDALRELFARDGDRIAAVIVEPVLANAGVIPPAPGFLQLLRELTGRSGAM 164 usage_00023.pdb 108 AHTVQLGWNDPDALRELFARDGDRIAAVIVEPVLANAGVIPPAPGFLQLLRELTGRSGAM 167 usage_00024.pdb 107 ANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDAL 166 usage_00025.pdb 106 ANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDAL 165 usage_00026.pdb 99 KNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGN-GVVPPQPGFLEGLREVTEQNGAL 157 usage_00027.pdb 96 KNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGN-GVVPPQPGFLEGLREVTEQNGAL 154 usage_00029.pdb 96 QEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGAL 155 usage_00037.pdb 82 KHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGN-NCIPPLPEFLPGLRALCDEFGAL 140 usage_00045.pdb 106 ANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDAL 165 t Nd f A i EP N g P gFL lre A usage_00003.pdb 167 LVFDEVMTGFRIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMY 226 usage_00004.pdb 167 LVFDEVITGFRIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMY 226 usage_00005.pdb 167 LVFDEVITGFRIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMY 226 usage_00008.pdb 166 LVFDEVMTGFRIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMY 225 usage_00022.pdb 165 LVFDEVITGFRVARGGAQERYGVEPDLTVLSKVMGGGFPVAAFGGRRHAMR--------- 215 usage_00023.pdb 168 LVFDEVITGFRVARGGAQERYGVEPDLTVLSKVMGGGFPVAAFGGRRHAMR--------- 218 usage_00024.pdb 167 LVFDEVMTGFRIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMY 226 usage_00025.pdb 166 LVFDEVMTGFRIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMY 225 usage_00026.pdb 158 LIFDEV-TGFRVAYNCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEI-RQVAPSGPIY 215 usage_00027.pdb 155 LIFDEV-TGFRVAYNCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEI-RQVAPSGPIY 212 usage_00029.pdb 156 VIYDEVITAFRF-YGGAQDLLGVTPDLTALG-VIGGGLPIGAYGGKKEI-EQVAPLGPAY 212 usage_00037.pdb 141 LIIDEV-TGFRVALAGAQDYYHVIPDLTCLGKIIGGG-PVGAFGGRREV-NALAPTGPVY 197 usage_00045.pdb 166 LVFDEVMTGFRIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMY 225 l DEV TgFR Q gV PDLT L GGG Pv A GG usage_00003.pdb 227 QAGT---LS-GNPLAMTAGIKTLELLR-QPGTYEYLDQITKRLSDGLLAIAQETGHAACG 281 usage_00004.pdb 227 QAGT---LS-GNPLAMTAGIKTLELLR-QPGTYEYLDQITKRLSDGLLAIAQETGHAACG 281 usage_00005.pdb 227 QAGT---LS-GNPLAMTAGIKTLELLR-QPGTYEYLDQITKRLSDGLLAIAQETGHAACG 281 usage_00008.pdb 226 QAGT---LS-GNPLAMTAGIKTLELLR-QPGTYEYLDQITKRLSDGLLAIAQETGHAACG 280 usage_00022.pdb 216 ----AGVYA-GNHAALRAVVAMLGKIRSLPDLYERLEDTGQYMEDTVREVFATEKRPVHI 270 usage_00023.pdb 219 ---------MGNHAALRAVVAMLGKIRSLPDLYERLEDTGQYMEDTVREVFATEKRPVHI 269 usage_00024.pdb 227 QAGT---LS-GNPLAMTAGIKTLELLR-QPGTYEYLDQITKRLSDGLLAIAQETGHAACG 281 usage_00025.pdb 226 QAGT---LS-GNPLAMTAGIKTLELLR-QPGTYEYLDQITKRLSDGLLAIAQETGHAACG 280 usage_00026.pdb 216 QAGT---LS-GNPL-AAAGYETLVQL--TPESYVEFERKAE-LEAGLRKAAEKHGIPHHI 267 usage_00027.pdb 213 QAGT---LS-GNPL-AAAGYETLVQL--TPESYVEFERKAE-LEAGLRKAAEKHGIPHHI 264 usage_00029.pdb 213 QAGT----A-GNPA-SASGIACLEVLQ-QEGLYEKLDELGATLEKGILEQAAKHNIDITL 265 usage_00037.pdb 198 Q-TL----S-GNPI-AAAGFACLTEIS-QVGVYETLTELTDSLATGLRHAAKEENIPLVV 249 usage_00045.pdb 226 QAGT---LS-GNPLAMTAGIKTLELLR-QPGTYEYLDQITKRLSDGLLAIAQETGHAACG 280 GN a L Y usage_00003.pdb 282 GQVSGMFGFF-FTEG---PVHNYEDAKKSDLQKFSRFHRGMLEQG 322 usage_00004.pdb 282 GQVSGMFGFF-FTEG---PVHNYEDAKKSDLQKFSRFHRGMLEQG 322 usage_00005.pdb 282 GQVSGMFGFF-FTEG---PVHNYEDAKKSDLQKFSRFHRGMLEQG 322 usage_00008.pdb 281 GQVSGMFGFF-FTEG---PVHNYEDAKKSDLQKFSRFHRGMLEQG 321 usage_00022.pdb 271 NRVGTLMSVA-LLK----EPRDLRQLAALV--------------- 295 usage_00023.pdb 270 NRVGTLMSVA-LLK-GSAEPRDLRQLAALV--------------- 297 usage_00024.pdb 282 GQVSGMFGFF-FTEG---PVHNYEDAKKSDLQKFSRFHRGMLEQG 322 usage_00025.pdb 281 GQVSGMFGFF-FTEG---PVHNYEDAKKSDLQKFSRFHRGMLEQG 321 usage_00026.pdb 268 NRAGS-IGIF-FTDE---PVINYDAAKSSNLQFFAAYYREVEQG- 306 usage_00027.pdb 265 NRAGS-IGIF-FTDE---PVINYDAAKSSNLQFFAAYYREVEQG- 303 usage_00029.pdb 266 NRLKGALTVY-FTTN---TIEDYDAAQDT---------------- 290 usage_00037.pdb 250 NHVGG-FGLFFTNAD---TVTCYQDVN-C---------------- 273 usage_00045.pdb 281 GQVSGMFGFF-FTEG---PVHNYEDAKKSDLQKFSRFHRGMLEQG 321 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################