################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:27:38 2021 # Report_file: c_1135_41.html ################################################################################################ #==================================== # Aligned_structures: 29 # 1: usage_00540.pdb # 2: usage_00541.pdb # 3: usage_00542.pdb # 4: usage_00543.pdb # 5: usage_00544.pdb # 6: usage_00546.pdb # 7: usage_00547.pdb # 8: usage_00548.pdb # 9: usage_00549.pdb # 10: usage_00550.pdb # 11: usage_00551.pdb # 12: usage_00552.pdb # 13: usage_01120.pdb # 14: usage_01121.pdb # 15: usage_01122.pdb # 16: usage_01123.pdb # 17: usage_01124.pdb # 18: usage_01125.pdb # 19: usage_01126.pdb # 20: usage_01127.pdb # 21: usage_01265.pdb # 22: usage_01266.pdb # 23: usage_01267.pdb # 24: usage_01268.pdb # 25: usage_01269.pdb # 26: usage_01270.pdb # 27: usage_01271.pdb # 28: usage_01272.pdb # 29: usage_01273.pdb # # Length: 146 # Identity: 77/146 ( 52.7%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 77/146 ( 52.7%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 69/146 ( 47.3%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00540.pdb 1 FFGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVV 60 usage_00541.pdb 1 -------------------------GVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVV 35 usage_00542.pdb 1 -----GCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVV 55 usage_00543.pdb 1 FFGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVV 60 usage_00544.pdb 1 FFGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVV 60 usage_00546.pdb 1 -FGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVV 59 usage_00547.pdb 1 FFGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVV 60 usage_00548.pdb 1 --GAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVV 58 usage_00549.pdb 1 FFGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVV 60 usage_00550.pdb 1 -FGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVV 59 usage_00551.pdb 1 -FGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVV 59 usage_00552.pdb 1 -------------------------------TCVLRPDLLFKNIVPVIMAGIIAIYGLVV 29 usage_01120.pdb 1 FFGAIGCASAIIFTSLGAAYGTAKSGV------------LFKNIVPVIMAGIIAIYGLVV 48 usage_01121.pdb 1 FFGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVV 60 usage_01122.pdb 1 FFGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVV 60 usage_01123.pdb 1 FFGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVV 60 usage_01124.pdb 1 FFGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVV 60 usage_01125.pdb 1 FFGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVV 60 usage_01126.pdb 1 FFGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVV 60 usage_01127.pdb 1 FFGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVV 60 usage_01265.pdb 1 -FGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVV 59 usage_01266.pdb 1 --GAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVV 58 usage_01267.pdb 1 FFGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVV 60 usage_01268.pdb 1 FFGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVV 60 usage_01269.pdb 1 FFGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVV 60 usage_01270.pdb 1 -FGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVV 59 usage_01271.pdb 1 FFGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVV 60 usage_01272.pdb 1 -----------------------------CATCVLRPDLLFKNIVPVIMAGIIAIYGLVV 31 usage_01273.pdb 1 FFGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVV 60 LFKNIVPVIMAGIIAIYGLVV usage_00540.pdb 61 SVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMI 120 usage_00541.pdb 36 SVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMI 95 usage_00542.pdb 56 SVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMI 115 usage_00543.pdb 61 SVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMI 120 usage_00544.pdb 61 SVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMI 120 usage_00546.pdb 60 SVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMI 119 usage_00547.pdb 61 SVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMI 120 usage_00548.pdb 59 SVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLF---- 114 usage_00549.pdb 61 SVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMI 120 usage_00550.pdb 60 SVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLF---- 115 usage_00551.pdb 60 SVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMI 119 usage_00552.pdb 30 SVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMI 89 usage_01120.pdb 49 SVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMI 108 usage_01121.pdb 61 SVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMI 120 usage_01122.pdb 61 SVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMI 120 usage_01123.pdb 61 SVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMI 120 usage_01124.pdb 61 SVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMI 120 usage_01125.pdb 61 SVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMI 120 usage_01126.pdb 61 SVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMI 120 usage_01127.pdb 61 SVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMI 120 usage_01265.pdb 60 SVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMI 119 usage_01266.pdb 59 SVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMI 118 usage_01267.pdb 61 SVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMI 120 usage_01268.pdb 61 SVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMI 120 usage_01269.pdb 61 SVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMI 120 usage_01270.pdb 60 SVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMI 119 usage_01271.pdb 61 SVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMI 120 usage_01272.pdb 32 SVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMI 91 usage_01273.pdb 61 SVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMI 120 SVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLF usage_00540.pdb 121 LILIFAEVLGLYGLIVAL-------- 138 usage_00541.pdb 96 LILIFAEVLGLYGLIVALLLNSRAT- 120 usage_00542.pdb 116 LILIFAEVLGLYGLIVALLLNSRATQ 141 usage_00543.pdb 121 LILIFAEVLGLYGLIVALLLNSRAT- 145 usage_00544.pdb 121 LILIFAEVLGLYGLIVALLLNSRAT- 145 usage_00546.pdb 120 LILIFAEVLGLYGLIVALLLNS---- 141 usage_00547.pdb 121 LILIFAEVLGLYGLIVALLLNSRAT- 145 usage_00548.pdb -------------------------- usage_00549.pdb 121 LILIFAEVLGLYGLIVALLLNSRA-- 144 usage_00550.pdb -------------------------- usage_00551.pdb 120 LILIFAEVLGLYGLIVALLLNSRAT- 144 usage_00552.pdb 90 LILIFAEVLGLYGLIVALLLNSR--- 112 usage_01120.pdb 109 LILIFAEVLGLYGLIVALLLNSRA-- 132 usage_01121.pdb 121 LILIFAEVLGLYGLIVALLLNSRA-- 144 usage_01122.pdb 121 LILIFAEVLGLYGLIVALLLNSRA-- 144 usage_01123.pdb 121 LILIFAEVLGLYGLIVALLLNSRA-- 144 usage_01124.pdb 121 LILIFAEVLGLYGLIVALLLNSRA-- 144 usage_01125.pdb 121 LILIFAEVLGLYGLIVALLLNSRA-- 144 usage_01126.pdb 121 LILIFAEVLGLYGLIVALLLNSRA-- 144 usage_01127.pdb 121 LILIFAEVLGLYGLIVALLLNSRA-- 144 usage_01265.pdb 120 LILIFAEVLGLYGLIVALLLNSR--- 142 usage_01266.pdb 119 LILIFAEVLGLYGLIVALLLNSRAT- 143 usage_01267.pdb 121 LILIFAEVLGLYGLIVALLLNSRAT- 145 usage_01268.pdb 121 LILIFAEVLGLYGLIVALLLNSRAT- 145 usage_01269.pdb 121 LILIFAEVLGLYGLIVALLLNSRAT- 145 usage_01270.pdb 120 LILIFAEVLGLYGLIVALLLNSRA-- 143 usage_01271.pdb 121 LILIFAEVLGLYGLIVALLLNSRAT- 145 usage_01272.pdb 92 LILIFAEVLGLYGLIVALLLNSRAT- 116 usage_01273.pdb 121 LILIFAEVLGLYGLIVALLLNSRAT- 145 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################