################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:52:28 2021 # Report_file: c_1068_22.html ################################################################################################ #==================================== # Aligned_structures: 12 # 1: usage_00017.pdb # 2: usage_00018.pdb # 3: usage_00019.pdb # 4: usage_00020.pdb # 5: usage_00021.pdb # 6: usage_00022.pdb # 7: usage_00023.pdb # 8: usage_00273.pdb # 9: usage_00276.pdb # 10: usage_00277.pdb # 11: usage_00278.pdb # 12: usage_00518.pdb # # Length: 60 # Identity: 56/ 60 ( 93.3%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 56/ 60 ( 93.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 3/ 60 ( 5.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00017.pdb 1 -DRAWVKLISSHDKLVSDLVRRQSGHVVKSQGDGFMVAFARPEQAVRCGIELQRALRRNA 59 usage_00018.pdb 1 -DRAWVKLISSHDKLVSDLVRRQSGHVVKSQGDGFMVAFARPEQAVRCGIELQRALRRN- 58 usage_00019.pdb 1 GDRAWVKLISSHDKLVSDLVRRQSGHVVKSQGDGFMVAFARPEQAVRCGIELQRALRRNA 60 usage_00020.pdb 1 -DRAWVKLISSHDKLVSDLVRRQSGHVVKSQGDGFMVAFARPEQAVRCGIELQRALRRNA 59 usage_00021.pdb 1 -DRAWVKLISSHDKLVSDLVRRQSGHVVKSQGDGFMVAFARPEQAVRCGIELQRALRR-- 57 usage_00022.pdb 1 GDRAWVKLISSHDKLVSDLVRRQSGHVVKSQGDGFMVAFARPEQAVRCGIELQRALRR-- 58 usage_00023.pdb 1 -DRAWVKLISSHDKLVSDLVRRQSGHVVKSQGDGFMVAFARPEQAVRCGIELQRALRRNA 59 usage_00273.pdb 1 -DRAWVKLISSHDKLVSDLVRRQSGHVVKSQGDGFMVAFARPEQAVRCGIELQRALRRNA 59 usage_00276.pdb 1 -DRAWVKLISSHDKLVSDLVRRQSGHVVESQGDGFMVAFARPEQAVRCGIELQRALRRNA 59 usage_00277.pdb 1 GDRAWVKLISSHDKLVSDLVRRQSGHVVKSQGDGFMVAFARPEQAVRCGIELQRALRRN- 59 usage_00278.pdb 1 -DRAWVKLISSHDKLVSDLVRRQSGHVVKSQGDGFMVAFARPEQAVRCGIELQRALRRNA 59 usage_00518.pdb 1 GDRAWVKLISSHDKLVSDLVRRQSGHVVESQGDGFMVAFARPEQAVRCGIELQRALRRNA 60 DRAWVKLISSHDKLVSDLVRRQSGHVV SQGDGFMVAFARPEQAVRCGIELQRALRR #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################