################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:59:35 2021 # Report_file: c_1480_65.html ################################################################################################ #==================================== # Aligned_structures: 8 # 1: usage_01485.pdb # 2: usage_02447.pdb # 3: usage_02448.pdb # 4: usage_03197.pdb # 5: usage_03207.pdb # 6: usage_03209.pdb # 7: usage_03212.pdb # 8: usage_03489.pdb # # Length: 76 # Identity: 18/ 76 ( 23.7%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 18/ 76 ( 23.7%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 26/ 76 ( 34.2%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_01485.pdb 1 -DKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSF-TDKELH 58 usage_02447.pdb 1 -SRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQ-ALKDKK 58 usage_02448.pdb 1 --KIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFT------ 52 usage_03197.pdb 1 -DKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSF-TDKELH 58 usage_03207.pdb 1 ---IGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSF-TDKELH 56 usage_03209.pdb 1 GSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQ-ALKDKK 59 usage_03212.pdb 1 ---IGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSF-TDKELH 56 usage_03489.pdb 1 -DKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSF-TDKELH 58 FQ A G II GW LTL LAI P K LS usage_01485.pdb 59 AYAKAGAVAEEVLAAI 74 usage_02447.pdb 59 E--------------- 59 usage_02448.pdb ---------------- usage_03197.pdb 59 AYAKAGAVAEEVLAAI 74 usage_03207.pdb 57 AYAKAGAVAEEVLAAI 72 usage_03209.pdb 60 E-L------------- 61 usage_03212.pdb 57 AYAKAGAVAEEVLAAI 72 usage_03489.pdb 59 AYAKAGAVAEEVLAAI 74 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################