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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Wed Jan 20 23:38:15 2021
# Report_file: c_1376_1.html
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#====================================
# Aligned_structures: 7
#   1: usage_00413.pdb
#   2: usage_00414.pdb
#   3: usage_00557.pdb
#   4: usage_00898.pdb
#   5: usage_00906.pdb
#   6: usage_01029.pdb
#   7: usage_01030.pdb
#
# Length:         87
# Identity:       17/ 87 ( 19.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     21/ 87 ( 24.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           44/ 87 ( 50.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00413.pdb         1  DDLEKAKTHLVVLWASQANTIPATFWSLFQMIRNPEAMKAATEEVKRTLENAGQKVSLEG   60
usage_00414.pdb         1  DDLEKAKTHLVVLWASQANTIPATFWSLFQMIRNPEAMKAATEEVKRTLENAGQKVSL--   58
usage_00557.pdb         1  -------------------MGPAAFWLLLFLLKNPEALAAVRGELESILW----------   31
usage_00898.pdb         1  -------------------MGPAAFWLLLFLLKNPEALAAVRGELESILWQ---------   32
usage_00906.pdb         1  DAEMQRRAMLLQLWVTQGNAGPAAFWVMGYLLTHPEALRAVREEI-Q-------------   46
usage_01029.pdb         1  DDLEKAKTHLVVLWASQANTIPATFWSLFQMIRNPEAMKAATEEVKRTLENAGQKVSLEG   60
usage_01030.pdb         1  DDLEKAKTHLVVLWASQANTIPATFWSLFQMIRNPEAMKAATEEVKRTLENAGQKVSLEG   60
                                                PA FW l     nPEA  A   E                

usage_00413.pdb        61  NPICLSQAELNDLPVLDSIIKESLRLS   87
usage_00414.pdb        59  -PICLSQAELNDLPVLDSIIKESLRLS   84
usage_00557.pdb        32  -----PQKVLDSTPVLDSVLSESLRLT   53
usage_00898.pdb        33  ---TLPQKVLDSTPVLDSVLSESLRLT   56
usage_00906.pdb        47  -----------NTPVFDSVLWETLRLT   62
usage_01029.pdb        61  NPICLSQAELNDLPVLDSIIKESLRLS   87
usage_01030.pdb        61  NPICLSQAELNDLPVLDSIIKESLRLS   87
                                        PVlDS   EsLRL 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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