################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:27:29 2021 # Report_file: c_1121_61.html ################################################################################################ #==================================== # Aligned_structures: 15 # 1: usage_00112.pdb # 2: usage_00137.pdb # 3: usage_00226.pdb # 4: usage_00291.pdb # 5: usage_00307.pdb # 6: usage_00322.pdb # 7: usage_00394.pdb # 8: usage_00395.pdb # 9: usage_00434.pdb # 10: usage_00441.pdb # 11: usage_00442.pdb # 12: usage_00443.pdb # 13: usage_00449.pdb # 14: usage_00494.pdb # 15: usage_00544.pdb # # Length: 218 # Identity: 65/218 ( 29.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 65/218 ( 29.8%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 153/218 ( 70.2%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00112.pdb 1 -------------SCS-YLV----FWAIFNLVTFVVMVVLYAHIFGYVADLEDNWETLND 42 usage_00137.pdb 1 --------------------------------------------------LEDNWETLND 10 usage_00226.pdb 1 --------------------------FTPLAIMIVTYFLTIHALQKKAADLEDNWETLND 34 usage_00291.pdb 1 ---------------------------------------------------EDNWETLND 9 usage_00307.pdb 1 -------------------------------------------------DLEDNWETLND 11 usage_00322.pdb 1 ----------------GFVLAPIGLVLIVGGYFLIRGVMTLFSIKSNHADLEDNWETLND 44 usage_00394.pdb 1 --------------------------------------------------LEDNWETLND 10 usage_00395.pdb 1 --------------------------------------------------LEDNWETLND 10 usage_00434.pdb 1 PMNYMV---YFNF-----FA----CVLVPLLLMLGVYLRIFLAARRQLADLEDNWETLND 48 usage_00441.pdb 1 -MNYMV---YFNF-----FA----CVLVPLLLMLGVYLRIFLAARRQLADLEDNWETLND 47 usage_00442.pdb 1 --------------------------LVPLLLMLGVYLRIFLAARRQLADLEDNWETLND 34 usage_00443.pdb 1 --------------------------LVPLLLMLGVYLRIFLAARRQLADLEDNWETLND 34 usage_00449.pdb 1 ------YRYRAGFVLA-PIG----LVLIVGGYFLIRGVMTLFSARRQLADLEDNWETLND 49 usage_00494.pdb 1 -------------SDS-YLV----FWAIFNLVTFVVMVVLYAHIFGYVADLEDNWETLND 42 usage_00544.pdb 1 -MNYMV---YFNF-----FA----CVLVPLLLMLGVYLRIFLAARRQLADLEDNWETLND 47 EDNWETLND usage_00112.pdb 43 NLKVIEKADNAAQVKDALTKMRAAALDAQKG------------------MKDFRHGFDIL 84 usage_00137.pdb 11 NLKVIEKADNAAQVKDALTKMRAAALDAQKAT-PPKLE--DKSPD-SPEMKDFRHGFDIL 66 usage_00226.pdb 35 NLKVIEKADNAAQVKDALTKMR-A--------------------------KDFRHGFDIL 67 usage_00291.pdb 10 NLKVIEKADNAAQVKDALTKMRAAALDAQKAT-PPKLE--DKSPD-SPEMKDFRHGFDIL 65 usage_00307.pdb 12 NLKVIEKADNAAQVKDALTKMRAAALDAQKAT-PPKLEDKSPDSPEM---KDFRHGFDIL 67 usage_00322.pdb 45 NLKVIEKADNAAQVKDALTKMRAAALDAQKAT-PPKLE--DKSPD-SPEMKDFRHGFDIL 100 usage_00394.pdb 11 NLKVIEKADNAAQVKDALTKMRAAALDAQKAT-PPKLE--DKSPD-SPEMKDFRHGFDIL 66 usage_00395.pdb 11 NLKVIEKADNAAQVKDALTKMRAAALDAQKAT-PPKLE--DKSPD-SPEMKDFRHGFDIL 66 usage_00434.pdb 49 NLKVIEKADNAAQVKDALTKMRAAALDAQK-------------------MKDFRHGFDIL 89 usage_00441.pdb 48 NLKVIEKADNAAQVKDALTKMRAAALDAQKA-----------------EMKDFRHGFDIL 90 usage_00442.pdb 35 NLKVIEKADNAAQVKDALTKMRAAALDAQKAT---------------PEMKDFRHGFDIL 79 usage_00443.pdb 35 NLKVIEKADNAAQVKDALTKMRAAALDAQKA----------------PEMKDFRHGFDIL 78 usage_00449.pdb 50 NLKVIEKADNAAQVKDALTKMRAAALDAQ---------------------KDFRHGFDIL 88 usage_00494.pdb 43 NLKVIEKADNAAQVKDALTKMRAAALDAQKA------------------MKDFRHGFDIL 84 usage_00544.pdb 48 NLKVIEKADNAAQVKDALTKMRAAALDAQKATP-P------------PEMKDFRHGFDIL 94 NLKVIEKADNAAQVKDALTKMR A KDFRHGFDIL usage_00112.pdb 85 VGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLRNRDTMMSLLKTVVIVLGAFII 144 usage_00137.pdb 67 VGQIDDALKLANEGKVKEAQAAAE------------------------------------ 90 usage_00226.pdb 68 VGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYI-------------------------Q 102 usage_00291.pdb 66 VGQIDDALKLANEGKVKEAQAAAE------------------------------------ 89 usage_00307.pdb 68 VGQIDDALKLANEGKVKEAQAAAEQLKTTIRAYN-------------------------- 101 usage_00322.pdb 101 VGQIDDALKLANEGKVKEAQAAAEQLKTTRNA---------------------------- 132 usage_00394.pdb 67 VGQIDDALKLANEGKVKEAQAAAEQLKTTRNAY--------------------------- 99 usage_00395.pdb 67 VGQIDDALKLANEGKVKEAQAAAE------------------------------------ 90 usage_00434.pdb 90 VGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYI---------------------QKYLE 128 usage_00441.pdb 91 VGQIDDALKLANEGKVKEAQAAAE------------------------------------ 114 usage_00442.pdb 80 VGQIDDALKLANEGKVKEAQAAA------------------------------------- 102 usage_00443.pdb 79 VGQIDDALKLANEGKVKEAQAAAE------------------------------------ 102 usage_00449.pdb 89 VGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYI-------------------------Q 123 usage_00494.pdb 85 VGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLRNRDTMMSLLKTVVIVLGAFII 144 usage_00544.pdb 95 VGQIDDALKLANEGKVKEAQAAAEQLKTTRNA---------------------------- 126 VGQIDDALKLANEGKVKEAQAAA usage_00112.pdb 145 CWTPGLVLLLLDCCC----------------------- 159 usage_00137.pdb -------------------------------------- usage_00226.pdb 103 KYLQTISNEQRASKVLGIVFFLFLLMWC---------- 130 usage_00291.pdb -------------------------------------- usage_00307.pdb -------------------------------------- usage_00322.pdb -------------------------------------- usage_00394.pdb -------------------------------------- usage_00395.pdb -------------------------------------- usage_00434.pdb 129 RARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTF 166 usage_00441.pdb -------------------------------------- usage_00442.pdb -------------------------------------- usage_00443.pdb -------------------------------------- usage_00449.pdb 124 KYLERARSTLSKI------------------------- 136 usage_00494.pdb 145 CWTPGLVLLLLDVCC----------------------- 159 usage_00544.pdb -------------------------------------- #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################