################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:26:18 2021 # Report_file: c_1109_10.html ################################################################################################ #==================================== # Aligned_structures: 10 # 1: usage_00031.pdb # 2: usage_00087.pdb # 3: usage_00249.pdb # 4: usage_00250.pdb # 5: usage_00271.pdb # 6: usage_00319.pdb # 7: usage_00320.pdb # 8: usage_00321.pdb # 9: usage_00322.pdb # 10: usage_00349.pdb # # Length: 144 # Identity: 34/144 ( 23.6%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 34/144 ( 23.6%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 49/144 ( 34.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00031.pdb 1 -------------------VG------------------AMAIGTARAAFEEALVFAKSD 23 usage_00087.pdb 1 --------------------G------------------AMAIGTARAAFEEALVFAKSD 22 usage_00249.pdb 1 PAGQGAKVAFGAFDGSAVLVG------------------AMGVGLMRAAFDAALKFAKED 42 usage_00250.pdb 1 PAGQGAKVAFGAFDGSAVLVG------------------AMGVGLMRAAFDAALKFAKED 42 usage_00271.pdb 1 -------------------VG------------------AMAIGTARAAFEEALVFAKSD 23 usage_00319.pdb 1 --------------------------------------VGAAIGTARAAFEEALVFAKSD 22 usage_00320.pdb 1 --------------------------------------VGAAIGTARAAFEEALVFAKSD 22 usage_00321.pdb 1 --------------------------------------VGAAIGTARAAFEEALVFAKSD 22 usage_00322.pdb 1 ---------------------GLKAQGLVETAFASAALVGAAIGTARAAFEEALVFAKSD 39 usage_00349.pdb 1 --------------------G------------------AMAIGTARAAFEEALVFAKSD 22 G RAAF AL FAK D usage_00031.pdb 24 TRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYT 83 usage_00087.pdb 23 TRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYT 82 usage_00249.pdb 43 NRGGAVPLLERQAFADLLSGVKIQTEAARALTWKAAHAMENGPGDYDARRELALAAKVFC 102 usage_00250.pdb 43 NRGGAVPLLERQAFADLLSGVKIQTEAARALTWKAAHAMENGPGDYDARRELALAAKVFC 102 usage_00271.pdb 24 TRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYT 83 usage_00319.pdb 23 TRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLE-A-QTKIYT 80 usage_00320.pdb 23 TRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLE-A-QTKIYT 80 usage_00321.pdb 23 TRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLE-A-QTKIYT 80 usage_00322.pdb 40 TRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLE-A-QTKIYT 97 usage_00349.pdb 23 TRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYT 82 RGG E Q AD L KI E R L WKA E E A K usage_00031.pdb 84 TDVAVECVIDAMKAVGMKSYA--- 104 usage_00087.pdb 83 TDVAVECVIDAMKAVGMKSYA--- 103 usage_00249.pdb 103 SEAAVKACTDVINAVGISAYD--- 123 usage_00250.pdb 103 SEAAVKACTDVINAVGISAYD--- 123 usage_00271.pdb 84 TDVAVECVIDAMKAVGMKSYA--- 104 usage_00319.pdb 81 TDVAVECVIDAKAVG-K----SYA 99 usage_00320.pdb 81 TDVAVECVIDAKAVG-K----SYA 99 usage_00321.pdb 81 TDVAVECVIDAKAVG-K----SYA 99 usage_00322.pdb 98 TDVAVECVIDAKAVG-K----SYA 116 usage_00349.pdb 83 TDVAVECVIDAMKAVGMKSYA--- 103 AV D #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################