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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Wed Jan 20 23:30:45 2021
# Report_file: c_1101_20.html
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#====================================
# Aligned_structures: 6
#   1: usage_00004.pdb
#   2: usage_00005.pdb
#   3: usage_00344.pdb
#   4: usage_00345.pdb
#   5: usage_00765.pdb
#   6: usage_00782.pdb
#
# Length:        160
# Identity:      111/160 ( 69.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    115/160 ( 71.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           39/160 ( 24.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00004.pdb         1  ---AWLLMAFTALALELTALWFQHVMLLKPCVLCIYERVALFGVLGAALIGAIAPKT--P   55
usage_00005.pdb         1  ---AWLLMAFTALALELTALWFQHVMLLKPCVLCIYERVALFGVLGAALIGAIAPKT--P   55
usage_00344.pdb         1  GRGAWLLMAFTALALELTALWFQHVMLLKPSVLCIYERVALFGVLGAALIGA--IAPKTP   58
usage_00345.pdb         1  GRGAWLLMAFTALALELTALWFQHVMLLKPSVLCIYERVALFGVLGAALIGA--IAPKTP   58
usage_00765.pdb         1  -RGAWLLMAFTALALELTALWFQHVMLLKPCVLSIYERAALFGVLGAALIGA--IAPKTP   57
usage_00782.pdb         1  GRGAWLLMAFTALALELTALWFQHVMLLKPSVLCIYERVALFGVLGAALIGA--IAPKTP   58
                              AWLLMAFTALALELTALWFQHVMLLKP VLcIYERvALFGVLGAALIGA       P

usage_00004.pdb        56  LRYVAMVIWLYSAFRGVQLTYEHTMLQLYPSP--FATCDFMVRFPEWLPLDKWVP--QVF  111
usage_00005.pdb        56  LRYVAMVIWLYSAFRGVQLTYEHTMLQLYPSP--FATCDFMVRFPEWLPLDKWVP--QVF  111
usage_00344.pdb        59  LRYVAMVIWLYSAFRGVQLTYEHTMLQLYPSP--FATCDFMV-----LPLDKWVPQVFVA  111
usage_00345.pdb        59  LRYVAMVIWLYSAFRGVQLTYEHTMLQLYPSP--FATCDFMV-----LPLDKWVPQVFVA  111
usage_00765.pdb        58  LRYVAMVIWLYSAFRGVQLTYEHTMLQLYPSPFAT-S-DFMVRFPEWLPLDKWVPQVFVA  115
usage_00782.pdb        59  LRYVAMVIWLYSAFRGVQLTYEHTMLQLYPSP--FATCDFMV-----LPLDKWVPQVFVA  111
                           LRYVAMVIWLYSAFRGVQLTYEHTMLQLYPSP  f t DFMV     LPLDKWVP   V 

usage_00004.pdb       112  ---------------VAMPQWLLGIFIAYLIVAVLVVI--  134
usage_00005.pdb       112  ---------------VAMPQWLLGIFIAYLIVAVLVVI--  134
usage_00344.pdb       112  SGDCAERQWDFLGLE--MPQWLLGIFIAYLIVAVLV----  145
usage_00345.pdb       112  SGDCAERQWDFLGLE--MPQWLLGIFIAYLIVAVLVVI--  147
usage_00765.pdb       116  SGDCAERQWDFLGLE--MPQWLLGIFIAYLIVAVLVVISQ  153
usage_00782.pdb       112  SGDCAERQWDFLGLE--MPQWLLGIFIAYLIVAVLVVI--  147
                                            MPQWLLGIFIAYLIVAVLV    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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