################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:31:17 2021 # Report_file: c_1148_43.html ################################################################################################ #==================================== # Aligned_structures: 6 # 1: usage_00934.pdb # 2: usage_01340.pdb # 3: usage_01341.pdb # 4: usage_01342.pdb # 5: usage_01343.pdb # 6: usage_02043.pdb # # Length: 62 # Identity: 1/ 62 ( 1.6%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 5/ 62 ( 8.1%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 44/ 62 ( 71.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00934.pdb 1 NTTA----NRLFWKNGSAEEA---IADGVEITSAD--------------GKVTRVHAK-- 37 usage_01340.pdb 1 --------AEILFHED----G---SVKGIATN---DVGIQKDGAPKTTFERGLELHAK-- 40 usage_01341.pdb 1 ---------EILFHED----G---SVKGIATN---DVGIQKDGAPKTTFERGLELHAK-- 39 usage_01342.pdb 1 --------AEILFHED----G---SVKGIATN---DVGIQKDGAPKTTFERGLELHAK-- 40 usage_01343.pdb 1 --------AEILFHED----G---SVKGIATN---DVGIQKDGAPKTTFERGLELHAK-- 40 usage_02043.pdb 1 ----AQISYVSKASAD----GTTSAVSGVAIT---DTGS------TGAGTA-------AG 36 d g v G a usage_00934.pdb -- usage_01340.pdb -- usage_01341.pdb -- usage_01342.pdb -- usage_01343.pdb -- usage_02043.pdb 37 TT 38 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################