################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:23:44 2021 # Report_file: c_0812_6.html ################################################################################################ #==================================== # Aligned_structures: 6 # 1: usage_00002.pdb # 2: usage_00018.pdb # 3: usage_00019.pdb # 4: usage_00033.pdb # 5: usage_00043.pdb # 6: usage_00044.pdb # # Length: 81 # Identity: 10/ 81 ( 12.3%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 20/ 81 ( 24.7%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 25/ 81 ( 30.9%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00002.pdb 1 ---ALMQLNEIK-----P---G-LQYMLLSQT--GPVHAPLFVMSVEVNGQ--VFEGSGP 44 usage_00018.pdb 1 ---PVMILNELR-----P---G-LKYDFLSES--GESHAKSFVMSVVVDGQ--FFEGSGR 44 usage_00019.pdb 1 PKNALMQLNEIK-----P---G-LQYMLLSQT--GPVHAPLFVMSVEVNGQ--VFEGSGP 47 usage_00033.pdb 1 ---AKRQLYSLI-----GYASLRLHYVTVKKPTA---VDPNSIVECRVGDGTVLGTGVGR 49 usage_00043.pdb 1 ---PVMILNELR-----P---G-LKYDFLSES--GESHAKSFVMSVVVDGQ--FFEGSGR 44 usage_00044.pdb 1 ---PISRLAQIQQARKEK---E-PDYILLSER--GMPRRREFVMQVKVGNE--VATGTGP 49 L l Y ls fvm v V G G usage_00002.pdb 45 TKKKAKLHAAEKALRSFVQ-- 63 usage_00018.pdb 45 NKKLAKARAAQSALATVFN-- 63 usage_00019.pdb 48 TKKKAKLHAAEKALRS----- 63 usage_00033.pdb 50 NIKIAGIRAAENALR------ 64 usage_00043.pdb 45 NKKLAKARAAQSALATVFNLH 65 usage_00044.pdb 50 NKKIAKKNAAEAMLLQLG--- 67 kK Ak AA aL #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################