################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 04:47:27 2021 # Report_file: c_0118_12.html ################################################################################################ #==================================== # Aligned_structures: 35 # 1: usage_00007.pdb # 2: usage_00023.pdb # 3: usage_00024.pdb # 4: usage_00025.pdb # 5: usage_00037.pdb # 6: usage_00126.pdb # 7: usage_00182.pdb # 8: usage_00183.pdb # 9: usage_00192.pdb # 10: usage_00196.pdb # 11: usage_00224.pdb # 12: usage_00254.pdb # 13: usage_00255.pdb # 14: usage_00271.pdb # 15: usage_00295.pdb # 16: usage_00358.pdb # 17: usage_00393.pdb # 18: usage_00407.pdb # 19: usage_00408.pdb # 20: usage_00409.pdb # 21: usage_00410.pdb # 22: usage_00429.pdb # 23: usage_00436.pdb # 24: usage_00457.pdb # 25: usage_00458.pdb # 26: usage_00459.pdb # 27: usage_00460.pdb # 28: usage_00472.pdb # 29: usage_00481.pdb # 30: usage_00505.pdb # 31: usage_00531.pdb # 32: usage_00548.pdb # 33: usage_00556.pdb # 34: usage_00557.pdb # 35: usage_00561.pdb # # Length: 147 # Identity: 20/147 ( 13.6%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 29/147 ( 19.7%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 37/147 ( 25.2%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00007.pdb 1 -QLVQSGGGVVQPRRSLRLSCAASGFTFSSY-AMHWVRQAPGKGLEWVAVISYDGRNKYY 58 usage_00023.pdb 1 VQLVESGGGVVQPGRSLRLSCAASGFTFSNH-GMHWVRQAPGKRLEWVAVISYDGRHEHY 59 usage_00024.pdb 1 VQLVESGGGVVQPGRSLRLSCAASGFTFSNH-GMHWVRQAPGKRLEWVAVISYDGRHEHY 59 usage_00025.pdb 1 VQLVESGGGVVQPGRSLRLSCAASGFTFSNH-GMHWVRQAPGKRLEWVAVISYDGRHEHY 59 usage_00037.pdb 1 -QLVESGGGLVQPGGSLRLSCAVSGYSITSGYSWNWIRQAPGKGLEWVASITYDG-STNY 58 usage_00126.pdb 1 -RLVESGGGVVQPGSSLRLSCAASGFDFSRQ-GMHWVRQAPGQGLEWVAFIKYDGSEKYH 58 usage_00182.pdb 1 VQLVESGGGVVQPGRSLRLSCAASGFTFRNY-AMHWVRQAPGKGLEWVALIKYDGRNKYY 59 usage_00183.pdb 1 VQLVESGGGVVQPGRSLRLSCAASGFTFRNY-AMHWVRQAPGKGLEWVALIKYDGRNKYY 59 usage_00192.pdb 1 VQLVESGGGVVQPGRSLRLSCAASGFTFSGY-GMHWVRQAPGKGLEWVALISYDESNKYY 59 usage_00196.pdb 1 -QLVESGGGVVQPGRSLRLSCAASGFSFSHY-AMHWVRQAPGKGLEWVAVISYDGENTYY 58 usage_00224.pdb 1 VQLVESGGGLVQPGGSRKLSCAASGFTFSSF-GMHWVRQAPEKGLEWVAYISSGSSTLHY 59 usage_00254.pdb 1 VQLVESGGGVVQPGRSLRLSCAASGFTFSVY-GMNWVRQAPGKGLEWVAIIWYDGDNQYY 59 usage_00255.pdb 1 VQLVESGGGVVQPGRSLRLSCAASGFTFSVY-GMNWVRQAPGKGLEWVAIIWYDGDNQYY 59 usage_00271.pdb 1 VQLVESGGGVVQPGKSVRLSCVVSDFPFSKY-PMYWVRQAPGKGLEWVAAISGDAWHVVY 59 usage_00295.pdb 1 VKLLESGGGLAQPGGSLKLSCAASGFDFRRY-WMTWVRQAPGKGLEWIGEINPDSRTINY 59 usage_00358.pdb 1 EQLVESGGGVVQPGGSLRLSCLASGFTFHKY-GMHWVRQAPGKGLEWVALISDDGMRKYH 59 usage_00393.pdb 1 -QLVQSGGGVKKPGTSVTISCLASEYTFNEF-VIHWIRQAPGQGPVWLGLIKRSG-RLMT 57 usage_00407.pdb 1 VQLVESGGGVVQPGRSLRLSCAASGFTFSTY-AMHWVRQAPGKGLEWVAIISYDGSKKYY 59 usage_00408.pdb 1 VQLVESGGGVVQPGRSLRLSCAASGFTFSTY-AMHWVRQAPGKGLEWVAIISYDGSKKYY 59 usage_00409.pdb 1 VQLVESGGGVVQPGRSLRLSCAASGFTFSSY-GMHWVRQAPGKGLEWVAVIWYDGSNKYY 59 usage_00410.pdb 1 VQLVESGGGVVQPGRSLRLSCAASGFTFSSY-GMHWVRQAPGKGLEWVAVIWYDGSNKYY 59 usage_00429.pdb 1 VQLLESGGGVVQPGRSLRLSCTASGFTFNNY-GMHWVRQTPGKGLEWLAVIWFDENNKYY 59 usage_00436.pdb 1 -QLVESGGGLVQPGGSLRLSCAASGFTFSSH-DMHWVRQATGKGLEWVSGIGTAG-DTYY 57 usage_00457.pdb 1 VQLVESGGGVVQPGGSLRLSCVASGFSFSDF-GMNWVRQAPGKGLEWVAFVPFDRRINYY 59 usage_00458.pdb 1 VQLVESGGGVVQPGGSLRLSCVASGFSFSDF-GMNWVRQAPGKGLEWVAFVPFDRRINYY 59 usage_00459.pdb 1 VQLVESGGGVVQPGGSLRLSCVASGFSFSDF-GMNWVRQAPGKGLEWVAFVPFDRRINYY 59 usage_00460.pdb 1 VQLVESGGGVVQPGGSLRLSCVASGFSFSDF-GMNWVRQAPGKGLEWVAFVPFDRRINYY 59 usage_00472.pdb 1 -QLVESGGGLVKPGGSLRLSCAASGFTFSSY-SMNWVRQAPGRGLEWVSSISNTSTYIYY 58 usage_00481.pdb 1 VQLVESGGGVVQPGRSLRLSCAASGFTFSVY-GMNWVRQAPAKGLEWVAIIWYDGDNQYY 59 usage_00505.pdb 1 VQLVESGGGLVQPGGSLRLSCAASGFTFSSY-WMSWVRQAPGKGLEWVANIKPDGSEKYY 59 usage_00531.pdb 1 VSLVESGGGTVEPGSTLRLSCAASGFTFGSY-AFHWVRQAPGDGLEWVAFISYNGSSKYY 59 usage_00548.pdb 1 -QLVQSGGGLKKPGTSVTISCLASEYTFNEF-VIHWIRQAPGQGPLWLGLIKRSG-RLMT 57 usage_00556.pdb 1 VQLVESGGNVVQPGGSLRLSCTASGFSFDDS-TMHWVRQAPGKGLQWVSLISWNGGRTYY 59 usage_00557.pdb 1 VQLVESGGNVVQPGGSLRLSCTASGFSFDDS-TMHWVRQAPGKGLQWVSLISWNGGRTYY 59 usage_00561.pdb 1 VQLVESGGGLVQPGKSLKLSCEASGFTFSGY-GMHWVRQAPGRGLESVAYITSSSINIKY 59 L SGG Pg s SC S f W RQap w usage_00007.pdb 59 ADSVKGRFTVSRDNSKNTLYLQMNSLRAEDTSVYYCARELLMDYY--------------- 103 usage_00023.pdb 60 ADLVKGRFTISRDNSKNTLYLQMNSLRAEDRALYFCAREGL---S--R------------ 102 usage_00024.pdb 60 ADLVKGRFTISRDNSKNTLYLQMNSLRAEDRALYFCAREGL---S--R------------ 102 usage_00025.pdb 60 ADLVKGRFTISRDNSKNTLYLQMNSLRAEDRALYFCAREGL---S--R------------ 102 usage_00037.pdb 59 NPSVKGRITISRDDSKNTFYLQMNSLRAEDTAVYYCARGSH---Y--F------------ 101 usage_00126.pdb 59 ADSVWGRLSISRDNSKDTLYLQMNSLRVEDTATYFCVREAG---G--P-DYRNGYN-DFY 111 usage_00182.pdb 60 ADSVKGRFSISRDNSKNTLYLEMNSLRAEDTAVYYCARDIG---LK-GE---------H- 105 usage_00183.pdb 60 ADSVKGRFSISRDNSKNTLYLEMNSLRAEDTAVYYCARDIG---LK-GE---------H- 105 usage_00192.pdb 60 ADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKVKF---Y--------------- 101 usage_00196.pdb 59 ADSVKGRFSISRDNSKNTVSLQMNSLRPEDTALYYCARDRI---V--------------- 100 usage_00224.pdb 60 ADTVKGRFTISRDNPKNTLFLQMTSLRSEDTGMYYCARWGN---Y--------------- 101 usage_00254.pdb 60 ADSVKGRFTISRDNSKNTLYLQMNGLRAEDTAVYYCARDLR------------------- 100 usage_00255.pdb 60 ADSVKGRFTISRDNSKNTLYLQMNGLRAEDTAVYYCARDLR------------------- 100 usage_00271.pdb 60 SNSVQGRFLVSRDNVKNTLYLEMNSLKIEDTAVYRCARMFQ---E-SG-PPR-----LDR 109 usage_00295.pdb 60 MPSLKDKFIISRDNAKNSLYLQLSRLRSEDSALYYCVRLDF---D--V------------ 102 usage_00358.pdb 60 SDSMWGRVTISRDNSKNTLYLQFSSLKVEDTAMFFCAREAG---G--P-IWHDDVKYDFN 113 usage_00393.pdb 58 SYKFQDRLSLRRDRSTGTVFMELRGLRLDDTAVYYCARDGL---G--E---------VA- 102 usage_00407.pdb 60 ADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARASI---A--------------- 101 usage_00408.pdb 60 ADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARASI---A--------------- 101 usage_00409.pdb 60 ADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDPR---G--A---------TL- 104 usage_00410.pdb 60 ADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDPR---G--A---------TL- 104 usage_00429.pdb 60 ADSVRGRFTISRDNSKNTLFLQMNSLKTEDTAMYYCARDIS---L--V------------ 102 usage_00436.pdb 58 PDSVKGRFTISRENAKNSLYLQMNSLRAGDTAVYYCARDRY---S--P------------ 100 usage_00457.pdb 60 AESVRGRFTISRDDSKNTVFLQMDSLRPEDTAIYYCAKHRSQWNF--------------- 104 usage_00458.pdb 60 AESVRGRFTISRDDSKNTVFLQMDSLRPEDTAIYYCAKHRSQWNF--------------- 104 usage_00459.pdb 60 AESVRGRFTISRDDSKNTVFLQMDSLRPEDTAIYYCAKHRSQWNF--------------- 104 usage_00460.pdb 60 AESVRGRFTISRDDSKNTVFLQMDSLRPEDTAIYYCAKHRSQWNF--------------- 104 usage_00472.pdb 59 ADSVEGRFTLSRDNAKNSLYLQMNSLRAEDTAVYYCARANQ---H--F-DWL-----LSL 107 usage_00481.pdb 60 ADSVKGRFTISRDNSKNTLYLQMNGLRAEDTAVYYCARDLR------------------- 100 usage_00505.pdb 60 VDSVKGRFTISRDNAKNSVYLQMNSLRAEDTAVYYCARVSR------------------- 100 usage_00531.pdb 60 ASFVSGRFTISRDNSSNTLSLQMNSLKASDTAVYYCARAPD---C--A------------ 102 usage_00548.pdb 58 AYNFQDRLSLRRDRSTGTVFMELRGLRPDDTAVYYCARDGL---G--E---------VA- 102 usage_00556.pdb 60 ADSVKGRFTISRDNSKNSLYLQMNSLKTEDTAFYFCAKDKG---D--------------- 101 usage_00557.pdb 60 ADSVKGRFTISRDNSKNSLYLQMNSLKTEDTAFYFCAKDKG---D--------------- 101 usage_00561.pdb 60 ADAVKGRFTVSRDNAKNLLFLQMNILKSEDTAMYYCARFDW---D--------------- 101 r Rd L D y C usage_00007.pdb 104 ---DH--I--GYSPGPTWGQGTLVTVS 123 usage_00023.pdb 103 ---DN-SG-FTGL-IDYWGQGTMVTV- 122 usage_00024.pdb 103 ---DN-SG-FTGL-IDYWGQGTMVTV- 122 usage_00025.pdb 103 ---DN-SG-FTGL-IDYWGQGTMVTV- 122 usage_00037.pdb 102 ----G-----HWH-FAVWGQGTLVTV- 117 usage_00126.pdb 112 ----DGYY-NYHY-MDVWGKGTTVTV- 131 usage_00182.pdb 106 --YDI-L--TAYG-PDYWGQGALVTV- 125 usage_00183.pdb 106 --YDI-L--TAYG-PDYWGQGALVTV- 125 usage_00192.pdb 102 ---DP-----TAP-NDYWGQGTLVTVS 119 usage_00196.pdb 101 ---------YYYG-MDVWGQGATVTV- 116 usage_00224.pdb 102 ---------PYYA-MDYWGQGTSVTV- 117 usage_00254.pdb 101 ----------TGP-FDYWGQGTLVTV- 115 usage_00255.pdb 101 ----------TGP-FDYWGQGTLVTVS 116 usage_00271.pdb 110 -WSGR-NYYYYSG-MDVWGQGTTVTVS 133 usage_00295.pdb 103 ---YN----HYYV-LDYWGQGTSVTV- 120 usage_00358.pdb 114 ----DGYY-NYHY-MDVWGKGTTVTV- 133 usage_00393.pdb 103 ---PA----YLYG-IDAWGQGSTVIVT 121 usage_00407.pdb 102 ---------AARV-LDYWGRGTMVTVS 118 usage_00408.pdb 102 ---------AARV-LDYWGRGTMVTV- 117 usage_00409.pdb 105 ---YY----YYYG-MDVWGQGTTVTV- 122 usage_00410.pdb 105 ---YY----YYYG-MDVWGQGTTVTV- 122 usage_00429.pdb 103 ---RD----AFIY-FDFWGLGTLVTVS 121 usage_00436.pdb 101 ---TG----HYYG-MDVWGQGTTVTVS 119 usage_00457.pdb 105 ---WP----REGG-LDHWGQGTLVTV- 122 usage_00458.pdb 105 ---WP----REGG-LDHWGQGTLVTV- 122 usage_00459.pdb 105 ---WP----REGG-LDHWGQGTLVTV- 122 usage_00460.pdb 105 ---WP----REGG-LDHWGQGTLVTV- 122 usage_00472.pdb 108 LGGYH-----YYG-MDVWGQGTTVTVS 128 usage_00481.pdb 101 ----------TGP-FDYWGQGTLVTVS 116 usage_00505.pdb 101 ----------GGS-YSDWGQGTLVTV- 115 usage_00531.pdb 103 ---DA-DC-HKGA-FGYWGQGTLVTVS 123 usage_00548.pdb 103 ---PD----YRYG-IDVWGQGSTVIVT 121 usage_00556.pdb 102 ---SY-----FYY-MDGWGKGTTVTVS 119 usage_00557.pdb 102 ---SY-----FYY-MDGWGKGTTVTVS 119 usage_00561.pdb 102 ------------K--NYWGQGTMVTV- 113 WG G V V #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################