################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:59:13 2021 # Report_file: c_0340_6.html ################################################################################################ #==================================== # Aligned_structures: 18 # 1: usage_00027.pdb # 2: usage_00028.pdb # 3: usage_00036.pdb # 4: usage_00037.pdb # 5: usage_00039.pdb # 6: usage_00040.pdb # 7: usage_00048.pdb # 8: usage_00051.pdb # 9: usage_00052.pdb # 10: usage_00059.pdb # 11: usage_00084.pdb # 12: usage_00085.pdb # 13: usage_00086.pdb # 14: usage_00087.pdb # 15: usage_00099.pdb # 16: usage_00100.pdb # 17: usage_00107.pdb # 18: usage_00110.pdb # # Length: 122 # Identity: 13/122 ( 10.7%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 24/122 ( 19.7%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 38/122 ( 31.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00027.pdb 1 -GLNLTSTFLRKNQCETKIMVLQPAGAPGHYTY--S------SPHS-GSIHSVSVVEANY 50 usage_00028.pdb 1 KSYNVTSVLFRKKKCDYWIRTFVPGSQPGEFTL--G-NI---KSYPGLTSYLVRVVSTNY 54 usage_00036.pdb 1 KSYNVTSVLFR--KCDYWIRTFVPGSQPGEFTL--G-NI---KSYPGLTSYLVRVVSTNY 52 usage_00037.pdb 1 KSYNVTSVLFRKKKCDYWIRTFVPGSQPGEFTL--G-NI---KSYPGLTSYLVRVVSTNY 54 usage_00039.pdb 1 KSYNVTSVLFRKKKCDYWIRTFVPGSQPGEFTL--G-NI---KSYPGLTSYLVRVVSTNY 54 usage_00040.pdb 1 KSYNVTSVLFRKKKCDYWIRTFVPGSQPGEFTL--G-NI---KSYPGLTSYLVRVVSTNY 54 usage_00048.pdb 1 ---NVTSVGFGTKKCHYKIRTFVPGSQPGEFTL--GRI-KSR---PGRTSALVRVVSTNY 51 usage_00051.pdb 1 KSYNVTSVLFRKKKCDYWIRTFVPGSQPGEFTL--G-NI---KSYPGLTSYLVRVVSTNY 54 usage_00052.pdb 1 KSYNVTSVLFRKKKCDYWIRTFVPGSQPGEFTL--G-NI---KSYPGLTSYLVRVVSTNY 54 usage_00059.pdb 1 ---NLTSTFLRKNQCETRTMLLQPAGSLGSYSY--R------SPHW-GSTYSVSVVETDY 48 usage_00084.pdb 1 KSYNVTSVISSHKKCEYTIATFVPGSQPGEFTL--G-N----------TSYLVRVVSTDY 47 usage_00085.pdb 1 KSYNVTSVISS--KCEYTIATFVPGSQPGEFTL--G-------------SYLVRVVSTDY 43 usage_00086.pdb 1 KSYNVTSVISS-HKCEYTIATFVPGSQPGEFTL--G-------------SYLVRVVSTDY 44 usage_00087.pdb 1 KSYNVTSVLFRKKKCDYAIATFVPGSQPGEFTL--G-NI---KSYPGLTSYLVRVVSTNY 54 usage_00099.pdb 1 ---SMTSTRWRKGVCEETSGAYEKTDTDGKFLYHKS-------K-W-NITMESYVVHTNY 48 usage_00100.pdb 1 KSYNVTNVRFVHKKCNYRIWTFVPGSQPGEFTL--G-NI---KSWPGLTSWLVRVVSTNY 54 usage_00107.pdb 1 ---NVTSVLFRKKKCDYAIRTFVPGCQPGEFTL--G-NI---KSYPGLTSYLVRVVSTNY 51 usage_00110.pdb 1 KSYNVTSVLFRKKKCDYWIRTFVPGSQPGEFTL--G-NI---KSYPGLTSYLVRVVSTNY 54 n Ts C p G v VV t Y usage_00027.pdb 51 DEYALLFSRGTKG-P---GQ-DFRMATLYSRTQTLKDELKEKFTTFSKAQGLTEEDIVFL 105 usage_00028.pdb 55 NQHAMVFFKKV-S-Q---NR-EYFKITLYGRTKELTSELKENFIRFSKSLGLPENHIVFP 108 usage_00036.pdb 53 --HAMVFFKAV-S-Q---NR-EYFAITLYGRTKE---ELKENFIRFSKSLGLPENHIVFP 101 usage_00037.pdb 55 NQHAMVFFKKV-S-Q---NR-EYFKITLYGRTKELTSELKENFIRFSKSLGLPENHIVFP 108 usage_00039.pdb 55 NQHAMVFFKKV-S-Q---NR-EYFKITLYGRTKELTSELKENFIRFSKSLGLPENHIVFP 108 usage_00040.pdb 55 NQHAMVFFKKV-S-Q---NR-EYFKITLYGRTKELTSELKENFIRFSKSLGLPENHIVFP 108 usage_00048.pdb 52 NQHAMVFFKVV-Q-Q---NR-ESFNITLYGRTKELTSELKENFIRFSKSLGLPENHIVFP 105 usage_00051.pdb 55 NQHAMVFFKKV-S-Q---NR-EYFKITLYGRTKELTSELKENFIRFSKSLGLPENHIVFP 108 usage_00052.pdb 55 NQHAMVFFKKV-S-Q---NR-EYFKITLYGRTKELTELKEN-FIRFSKSLGLPENHIVFP 107 usage_00059.pdb 49 DQYALLYSQGS---KGPG-E-DFRMATLYSRTQTPRAELKEKFTAFCKAQGFTEDTIVFL 103 usage_00084.pdb 48 NQYAVVFFKLA-D------NAEFFAITIYGRTKELASELKENFIRFSKSLGLPENHIVFP 100 usage_00085.pdb 44 NQYAVVFFKLA----------EFFAITIYGRTKELASELKENFIRFSKSLGLPENHIVFP 93 usage_00086.pdb 45 NQYAVVFFKLA-E--------EFFAITIYGRTKELASELKENFIRFSKSLGLPENHIVFP 95 usage_00087.pdb 55 NQHAMVFFKKV-S-Q---NR-EYFKITLYGRTKELTSELKENFIRFSKSLGLPENHIVFP 108 usage_00099.pdb 49 DEYAIFLTKKF-SRH---HG-PTITAKLYGRAPQLRETLLQDFRVVAQGVGIPEDSIFTM 103 usage_00100.pdb 55 NQHAMVFFKRV-Y-Q---NR-ELFEITLYGRTKELTNELKENFIRFSKSLGLPENHIVFP 108 usage_00107.pdb 52 NQHAMVFFKKV-S-Q---NR-EYFKITLYGRTKELTSELKNNFIRFSKSLGLPENHIVFP 105 usage_00110.pdb 55 NQHAMVFFKAV-S-Q---NR-EYFKITLYGRTKELTS-E-N-FIRFSKSLGLPENHIVFP 105 A t Y Rt F f k G E Ivf usage_00027.pdb 106 PQ 107 usage_00028.pdb 109 VP 110 usage_00036.pdb 102 VP 103 usage_00037.pdb 109 VP 110 usage_00039.pdb 109 VP 110 usage_00040.pdb 109 VP 110 usage_00048.pdb 106 VP 107 usage_00051.pdb 109 VP 110 usage_00052.pdb 108 VP 109 usage_00059.pdb 104 PQ 105 usage_00084.pdb 101 VP 102 usage_00085.pdb 94 VP 95 usage_00086.pdb 96 VP 97 usage_00087.pdb 109 VP 110 usage_00099.pdb 104 AD 105 usage_00100.pdb 109 VP 110 usage_00107.pdb 106 VP 107 usage_00110.pdb 106 VP 107 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################