################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:13:35 2021 # Report_file: c_0545_98.html ################################################################################################ #==================================== # Aligned_structures: 14 # 1: usage_00169.pdb # 2: usage_00234.pdb # 3: usage_00345.pdb # 4: usage_00457.pdb # 5: usage_00458.pdb # 6: usage_00459.pdb # 7: usage_00460.pdb # 8: usage_00480.pdb # 9: usage_00734.pdb # 10: usage_00839.pdb # 11: usage_00981.pdb # 12: usage_00982.pdb # 13: usage_01004.pdb # 14: usage_01005.pdb # # Length: 228 # Identity: 12/228 ( 5.3%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 96/228 ( 42.1%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 99/228 ( 43.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00169.pdb 1 -CGEQNMIGMTPTVIAVHYLDQTEQWEKFG-LEKRQEALELIKKGYTQQL-AFKQPISAY 57 usage_00234.pdb 1 GAGEQNMIGMTPTVIAVHYLDETEQWEKFG-LEKRQGALELIKKGYTQQL-AFRQPSSAF 58 usage_00345.pdb 1 -STWL-------TAYVVKVFSLAV--NLIAI------DSQVLCGAVKWLILEKQKPDGVF 44 usage_00457.pdb 1 ---EQNMIGMTPTVIAVHYLDETEQWEKFG-LEKRQGALELIKKGYTQQL-AFRQPSSAF 55 usage_00458.pdb 1 ---EQNMIGMTPTVIAVHYLDETEQWEKFG-LEKRQGALELIKKGYTQQL-AFRQPSSAF 55 usage_00459.pdb 1 ---EQNMIGMTPTVIAVHYLDETEQWEKFG-LEKRQGALELIKKGYTQQL-AFRQPSSAF 55 usage_00460.pdb 1 -AGEQNMIGMTPTVIAVHYLDETEQWEKFG-LEKRQGALELIKKGYTQQL-AFRQPSSAF 57 usage_00480.pdb 1 ------------TVIAVHYLDETEQWEKFG-LEKRQGALELIKKGYTQQL-AFRQPSSAF 46 usage_00734.pdb 1 GAGEQNMIGMTPTVIAVHYLDETEQWEKFG-LEKRQGALELIKKGYTQQL-AFRQPSSAF 58 usage_00839.pdb 1 -CGEQNMIGMTPTVIAVHYLDSTDQWEKFG-LEKRQESLELIRKGYTQQL-AFRQKSSAY 57 usage_00981.pdb 1 ---EQNMIGMTPTVIAVHYLDETEQWEKFG-LEKRQGALELIKKGYTQQL-AFRQPSSAF 55 usage_00982.pdb 1 ---EQNMIGMTPTVIAVHYLDETEQWEKFG-LEKRQGALELIKKGYTQQL-AFRQPSSAF 55 usage_01004.pdb 1 GAGEQNMIGMTPTVIAVHYLDETEQWEKFG-LEKRQGALELIKKGYTQQL-AFRQPSSAF 58 usage_01005.pdb 1 ------------TVIAVHYLDETEQWEKFG-LEKRQGALELIKKGYTQQL-AFRQPSSAF 46 TviaVhyld t ekfg leli kgytqql af qp sa usage_00169.pdb 58 AAF-----NNRP-P-------STWLTAYVSRVFSLAANLIA-I---DSQVLCGAVKWLIL 100 usage_00234.pdb 59 AAF-----VKRA-P-------STWLTAYVVKVFSLAVNLIA-I---DSQVLCGAVKWLIL 101 usage_00345.pdb 45 QEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEA 104 usage_00457.pdb 56 AAF-----VKRA-P-------STWLTAYVVKVFSLAVNLIA-I---DSQVLCGAVKWLIL 98 usage_00458.pdb 56 AAF-----VKRA-P-------STWLTAYVVKVFSLAVNLIA-I---DSQVLCGAVKWLIL 98 usage_00459.pdb 56 AAF-----VKRA-P-------STWLTAYVVKVFSLAVNLIA-I---DSQVLCGAVKWLIL 98 usage_00460.pdb 58 AAF-----VKRA-P-------STWLTAYVVKVFSLAVNLIA-I---DSQVLCGAVKWLIL 100 usage_00480.pdb 47 AAF-----VKRA-P-------STWLTAYVVKVFSLAVNLIA-I---DSQVLCGAVKWLIL 89 usage_00734.pdb 59 AAF-----VKRA-P-------STWLTAYVVKVFSLAVNLIA-I---DSQVLCGAVKWLIL 101 usage_00839.pdb 58 AAF-----QYRP-P-------STWLTAYVVKVFALAANLIA-I---DSKDLCETVKWLIL 100 usage_00981.pdb 56 AAF-----VKRA-P-------STWLTAYVVKVFSLAVNLIA-I---DSQVLCGAVKWLIL 98 usage_00982.pdb 56 AAF-----VKRA-P-------STWLTAYVVKVFSLAVNLIA-I---DSQVLCGAVKWLIL 98 usage_01004.pdb 59 AAF-----VKRA-P-------STWLTAYVVKVFSLAVNLIA-I---DSQVLCGAVKWLIL 101 usage_01005.pdb 47 AAF-----VKRA-P-------STWLTAYVVKVFSLAVNLIA-I---DSQVLCGAVKWLIL 89 aaf r p stwLTAyV vf lA nlia i ds lc avkwLil usage_00169.pdb 101 EKQKPDGVFQEDGPVIHQEMIGGFRNTK-----EADVSLTAFVLIALQEAR---DICEGQ 152 usage_00234.pdb 102 EKQKPDGVFQEDAPVIHQEMIGGLRNNN-----EKDMALTAFVLISLQEAK---DICEEQ 153 usage_00345.pdb 105 NYM---------------------NL-Q-------RSYTVAIAGYALAQMGRLK------ 129 usage_00457.pdb 99 EKQKPDGVFQEDAPVIHQEMIGGLRNNN-----EKDMALTAFVLISLQEAK---DICEEQ 150 usage_00458.pdb 99 EKQKPDGVFQEDAPVIHQEMIGGLRNNN-----EKDMALTAFVLISLQEAK---DICEEQ 150 usage_00459.pdb 99 EKQKPD--FQEDAPVIHQEMIGGLRN-------EKDMALTAFVLISLQEAK---DICEEQ 146 usage_00460.pdb 101 EKQKPDGVFQEDAPVIHQEMIGGLRNNN-----EKDMALTAFVLISLQEAK---DICEEQ 152 usage_00480.pdb 90 EKQKPDGVFQEDAPVIHQEMIGGLRNNN-----EKDMALTAFVLISLQEAK---DICEEQ 141 usage_00734.pdb 102 EKQKPDGVFQEDAPVIHQEMIGGLRNNN-----EKDMALTAFVLISLQEAK---DICEEQ 153 usage_00839.pdb 101 EKQKPDGIFQEDGPV----IHQEMIG-GFRDTREKDVSLTAFVLIALHEAK---DICEAQ 152 usage_00981.pdb 99 EKQKPDGVFQEDAPVIHQEMIGGLRNNN-----EKDMALTAFVLISLQEAK---DICEEQ 150 usage_00982.pdb 99 EKQKPDGVFQEDAPVIHQEMIGGLRNNN-----EKDMALTAFVLISLQEAK---DICEEQ 150 usage_01004.pdb 102 EKQKPDGVFQEDAPVIHQEMIGGLRNNN-----EKDMALTAFVLISLQEAK---DICEEQ 153 usage_01005.pdb 90 EKQKPDGVFQEDAPVIHQEMIGGLRNNN-----EKDMALTAFVLISLQEAK---DICEEQ 141 ekq d ltAfvli L ea usage_00169.pdb 153 VNSLPGSINKAGE-YLEASYL----NLQRPYTVAIAGYALAL----MN 191 usage_00234.pdb 154 VNSLPGSITKAGD-FLEANYM----NLQRSYTVAIAGYALAQ----MG 192 usage_00345.pdb 130 -GPLLNKFLTTAKD------KNRWEDPGKQLYNVEATSYALLALLQLK 170 usage_00457.pdb 151 VNSLPGSITKAGD-FLEANYM----NLQRSYTVAIAGYALAQ------ 187 usage_00458.pdb 151 VNSLPGSITKAGD-FLEANYM----NLQRSYTVAIAGYA--------- 184 usage_00459.pdb 147 VNSLPGSITKAGD-FLEANYM----NLQRSYTVAIAGYA--------- 180 usage_00460.pdb 153 VNSLPGSITKAGD-FLEANYM----NLQRSYTVAIAGYA--------- 186 usage_00480.pdb 142 VNSLPGSITKAGD-FLEANYM----NLQRSYTVAIAGYALAQ----MG 180 usage_00734.pdb 154 VNSLPGSITKAGD-FLEANYM----NLQRSYTVAIAGYALAQ----MG 192 usage_00839.pdb 153 VNSLGRSIAKAGD-FLENHYR----ELRRPYTVAIAAYALAL----LG 191 usage_00981.pdb 151 VNSLPGSITKAGD-FLEANYM----NLQRSYTVAIAGYALAQ----MG 189 usage_00982.pdb 151 VNSLPGSITKAGD-FLEANYM----NLQRSYTVAIAGYALAQ----MG 189 usage_01004.pdb 154 VNSLPGSITKAGD-FLEANYM----NLQRSYTVAIAGYALAQ----MG 192 usage_01005.pdb 142 VNSLPGSITKAGD-FLEANYM----NLQRSYTVAIAGYALAQ----MG 180 nsL si kag l r ytvaiA ya #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################