################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:13:00 2021 # Report_file: c_1371_138.html ################################################################################################ #==================================== # Aligned_structures: 9 # 1: usage_00004.pdb # 2: usage_00252.pdb # 3: usage_00253.pdb # 4: usage_00254.pdb # 5: usage_00284.pdb # 6: usage_00285.pdb # 7: usage_01323.pdb # 8: usage_01514.pdb # 9: usage_01515.pdb # # Length: 103 # Identity: 8/103 ( 7.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 25/103 ( 24.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 49/103 ( 47.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00004.pdb 1 SMMQEKILSELAYLRQSIDNFDITLIHILAERFRCTQAIGRLKARYNLPAVDPLREQYQI 60 usage_00252.pdb 1 --------ERIQALRKEVDRVNREILRLLSERGRLVQEIGRLQTELGLPHYDPKREEEML 52 usage_00253.pdb 1 --------ERIQALRKEVDRVNREILRLLSERGRLVQEIGRLQTELGLPHYDPKREEEML 52 usage_00254.pdb 1 --------ERIQALRKEVDRVNREILRLLSERGRLVQEIGRLQTELGLPHYDPKREEEML 52 usage_00284.pdb 1 -------------LRTQVDQLNIDLLELISKRANLVQEIGKIK-----LRFDPLREREML 42 usage_00285.pdb 1 -----------EELRTQVDQLNIDLLELISKRANLVQ-----------------E-REML 31 usage_01323.pdb 1 --------------RTQVDQLNIDLLELISKRANLVQEIGKIK-----GRFDPLREREML 41 usage_01514.pdb 1 -------NERLDELRARVDEINLQLLKLINERGRLVQEIGKIKEAQGTHRYDPVRERKML 53 usage_01515.pdb 1 ---------RLDELRARVDEINLQLLKLINERGRLVQEIGKIKEAQGTHRYDPVRERKML 51 R vD n l l R lvQ r ml usage_00004.pdb 61 KRLRKLAIDTHFDPDFAEKFLKFIIKEVVHQHEVIAEKQKIKK 103 usage_00252.pdb 53 AYLTAEN-PGPFPDETIRKLFKEIFKASL-------------- 80 usage_00253.pdb 53 AYLTAEN-PGPFPDETIRKLFKEIFKASLDLE----------- 83 usage_00254.pdb 53 AYLTAEN-PGPFPDETIRKLFKEIFKASLDLEER--------- 85 usage_00284.pdb 43 NTILAAN-EGPFEDSTVQKLFKEIFKAGLELQ----------- 73 usage_00285.pdb 32 NTILAAN-EGPFEDSTVQKLFKEIFKA---------------- 57 usage_01323.pdb 42 NTILAAN-EGPFEDSTVQKLFKEIFKAGLELQ----------- 72 usage_01514.pdb 54 DLISEHN-DGPFETSTLQHIFKEIFKAALELQEDDHRKAL--- 92 usage_01515.pdb 52 DLISEHN-DGPFETSTLQHIFKEIFKAALEL------------ 81 n gpF t fKeIfKa #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################