################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:08:14 2021 # Report_file: c_1418_1.html ################################################################################################ #==================================== # Aligned_structures: 9 # 1: usage_00043.pdb # 2: usage_00238.pdb # 3: usage_00242.pdb # 4: usage_00243.pdb # 5: usage_00244.pdb # 6: usage_00638.pdb # 7: usage_00866.pdb # 8: usage_00959.pdb # 9: usage_01106.pdb # # Length: 93 # Identity: 4/ 93 ( 4.3%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 11/ 93 ( 11.8%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 46/ 93 ( 49.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00043.pdb 1 -GSLFKLSTVLSAYASK--HY-----------NTKQQMLDVGKYLGIIYQVIDDFV---D 43 usage_00238.pdb 1 --GLFRLTLRLMEALSP--SSHHGH-------SLVPFINLLGIIYQIRDDYLNLKD---F 46 usage_00242.pdb 1 --GLFRLTLRLMEALSP--SS--GH-------SLVPFINLLGIIYQIRDDYLNLKD---F 44 usage_00243.pdb 1 --GLFRLTLRLMEALSP--S----H-------SLVPFINLLGIIYQIRDDYLNLKD---F 42 usage_00244.pdb 1 --GLFRLTLRLMEALSP--S----H-------SLVPFINLLGIIYQIRDDYLNLKD---F 42 usage_00638.pdb 1 --GLFRLTLRLMEALSP--S----H-------SLVPFINLLGIIYQIRDDYLNLKD---F 42 usage_00866.pdb 1 AFYSFYLPIAAAMYMAGIDG-------EKEHANAKKILLEMGEFFQIQDDYLDLFGDPSV 53 usage_00959.pdb 1 AYYSFFLPIVCGMLLAGIA------VDNLIYKKIEDISMLMGEYFQIHDDYLDI------ 48 usage_01106.pdb 1 --GLFRLTLRLMEALSP--SH--GH-------SLVPFINLLGIIYQIRDDYLNLKD---F 44 F L G qI ddyl usage_00043.pdb 44 YKTK----KVE---EIDGSAKQ----L------ 59 usage_00238.pdb 47 QM----SFAEDITEGKLSFPI-VHALNFTKTKG 74 usage_00242.pdb 45 QMSSEKGFAEDITEGKLSFPI-VHALNFTKTK- 75 usage_00243.pdb 43 QMSS--GFAEDITEGKLSFPI-VHALNFTKTKG 72 usage_00244.pdb 43 QMS---GFAEDITEGKLSFPI-VHALNFTKTKG 71 usage_00638.pdb 43 Q------FAEDITEGKLSFPI-VHALNFTKTKG 68 usage_00866.pdb 54 TG----KIGTDIQDNKCSWLV-VQCLQR----- 76 usage_00959.pdb 49 ---------SDIQNNKLTWPL-IKTFE------ 65 usage_01106.pdb 45 QM----GFAEDITEGKLSFPI-VHALNFTKTKG 72 d k #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################