################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:09:10 2021 # Report_file: c_0479_7.html ################################################################################################ #==================================== # Aligned_structures: 14 # 1: usage_00001.pdb # 2: usage_00005.pdb # 3: usage_00007.pdb # 4: usage_00008.pdb # 5: usage_00012.pdb # 6: usage_00013.pdb # 7: usage_00015.pdb # 8: usage_00018.pdb # 9: usage_00019.pdb # 10: usage_00025.pdb # 11: usage_00027.pdb # 12: usage_00029.pdb # 13: usage_00042.pdb # 14: usage_00044.pdb # # Length: 96 # Identity: 3/ 96 ( 3.1%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 4/ 96 ( 4.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 39/ 96 ( 40.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 -----KFVGGLSWDTSKKDLKDYFTKFGEVVDCTIK-DPNTGRSRGFGFILFKDAASVEK 54 usage_00005.pdb 1 ----KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDE 56 usage_00007.pdb 1 ----KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 56 usage_00008.pdb 1 ----KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQT 55 usage_00012.pdb 1 ---KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 57 usage_00013.pdb 1 ---NTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQK 56 usage_00015.pdb 1 ----RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQD 56 usage_00018.pdb 1 ----TVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQK 56 usage_00019.pdb 1 ----KIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAER 56 usage_00025.pdb 1 ---KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 57 usage_00027.pdb 1 -KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVK 59 usage_00029.pdb 1 ----KIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAER 56 usage_00042.pdb 1 ----KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDK 56 usage_00044.pdb 1 E---GKFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 57 f G G F usage_00001.pdb 55 VLDQK-------E-------HRLD----GRVIDPKK 72 usage_00005.pdb 57 VVKTQ-------H--------ILD----GKVIDPKR 73 usage_00007.pdb 57 VLASR-------P-------HTLD----GRNIDPKP 74 usage_00008.pdb 56 AIKAM-------HQAQTMEG---C----SSPMVVK- 76 usage_00012.pdb 58 IVIQK-------Y-------HTVN----GHNCEVRK 75 usage_00013.pdb 57 IVESQ----------------INF---H-------- 65 usage_00015.pdb 57 AVSSMN------L-------FDLG------------ 67 usage_00018.pdb 57 CLAAASLEAEGGG-----------LKLDGRQLKVDL 81 usage_00019.pdb 57 ACKDP-------N-------PIID----GRKANVN- 73 usage_00025.pdb 58 IVIQK-------Y-------HTVN----GHNCEVRK 75 usage_00027.pdb 60 VMSQR-------H--------MID----GRWCDCKL 76 usage_00029.pdb 57 ACKDP-------N-------PIID----GRKANVNL 74 usage_00042.pdb 57 VLAQS-------R-------HELD------------ 66 usage_00044.pdb 58 VDQKE-------H--------KLN----GKVIDPKR 74 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################