################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:25:05 2021 # Report_file: c_0447_18.html ################################################################################################ #==================================== # Aligned_structures: 15 # 1: usage_00024.pdb # 2: usage_00025.pdb # 3: usage_00088.pdb # 4: usage_00090.pdb # 5: usage_00094.pdb # 6: usage_00095.pdb # 7: usage_00096.pdb # 8: usage_00112.pdb # 9: usage_00127.pdb # 10: usage_00137.pdb # 11: usage_00143.pdb # 12: usage_00144.pdb # 13: usage_00155.pdb # 14: usage_00232.pdb # 15: usage_00235.pdb # # Length: 124 # Identity: 4/124 ( 3.2%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 8/124 ( 6.5%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 69/124 ( 55.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00024.pdb 1 ---RILMVGLDAAGKTTILYKLK--LG---E-IVTTIPT-I---GFNVETVEYKNISFTV 47 usage_00025.pdb 1 GSMRILMVGLDAAGKTTILYKLK--LG---E-IVTTIPT-I---GFNVETVEYKNISFTV 50 usage_00088.pdb 1 ---RILILGLDGAGKTTILYRLQ--VG---E-VVTTIPT-I---GFNVETVTYKNLKFQV 47 usage_00090.pdb 1 GSMRILMVGLDAAGKTTILYKLK--LG---E-IVTTIPT-I---GFNVETVEYKNISFTV 50 usage_00094.pdb 1 GSMRILMVGLDAAGKTTILYKLK--LG---E-IVTTIPT-I---GFNVETVEYKNISFTV 50 usage_00095.pdb 1 GSMRILMVGLDAAGKTTILYKLK--LG---E-IVTTIPT-I---GFNVETVEYKNISFTV 50 usage_00096.pdb 1 GSMRILMVGLDAAGKTTILYKLK--LG---E-IVTTIPT-I---GFNVETVEYKNISFTV 50 usage_00112.pdb 1 -EMRILMVGLDGAGKTTVLYKLKLGEV---I-TT--IPTIG--FNVETVQYKN----ISF 47 usage_00127.pdb 1 GVASVGFVGFPSVGKSTLLSKLT--G----T-ESE---TTL--VTV-PGVIRYKGAKIQM 47 usage_00137.pdb 1 ---KVIIVGLDNAGKTTILYQFL--M----NEVVHTSPT-I-GSNVEEIVVKN----THF 45 usage_00143.pdb 1 --MRILMVGLDGAGKTTVLYKLK--------------PT-I---GFNVETVQYK---FTV 37 usage_00144.pdb 1 ----ILMVGLDGAGKTTVLYKLK--LG---E-VITTIPT-I---GFNVETVS-----FTV 41 usage_00155.pdb 1 ---RILMVGLDAAGKTTILYKLK--LGEIVT-TIP---TIG----FNVETVEYKNISFTV 47 usage_00232.pdb 1 --MRILILGLDGAGKTTILYRLQ--VG---E-VVTTIPT-I---GFNVETVTYKNLKFQV 48 usage_00235.pdb 1 --PVVAIVGRPNVGKSTIFNRIA--G-----ER--------I-S-RIYSSAEWLNYDFNL 41 G GK T l usage_00024.pdb 48 WDVGG-----LD-----KIRPLWRH-YFQNTQGLIFVVDSND-RER----V--------- 82 usage_00025.pdb 51 WDVGG-----LD-----KIRPLWRH-YFQNTQGLIFVVDSND-RER----V--------- 85 usage_00088.pdb 48 WDLGG-----LT-----SIRPYWRC-YYSNTDAVIYVVDSCD-RDR----IGISKSELVA 91 usage_00090.pdb 51 WDVGG-----LD-----KIRPLWRH-YFQNTQGLIFVVDSND-RER----VNEAREELMR 94 usage_00094.pdb 51 WDVGG-----LD-----KIRPLWRH-YFQNTQGLIFVVDSND-RER----V--------- 85 usage_00095.pdb 51 WDVGG-----LD-----KIRPLWRH-YFQNTQGLIFVVDSND-RER----VNEAREELMR 94 usage_00096.pdb 51 WDVGG-----LD-----KIRPLWRH-YFQNTQGLIFVVDSND-RER----V--------- 85 usage_00112.pdb 48 TVWDV-----GGQDR---IRSLWRH-YYRNTEGVIFVVDSND-RSR----IGEAREVMQR 93 usage_00127.pdb 48 LDLPGIIDG----------GKQVIA-VARTCNLLFIILDVNKPL---HH-KQIIEKELEG 92 usage_00137.pdb 46 LMWDI-----GG---QESLRSSWNT-YYSNTEFIILVVDSID-RER----LAITKEELYR 91 usage_00143.pdb 38 WDVGG-----LD-----RIRSLWRH-YYRNTEGVIFVVDSND-RSR----IGEAREVMQR 81 usage_00144.pdb 42 WDVGG-----LD-----RIRSLWRH-YYRNT-GVIFVVDSND-RSR----IGEAREVMQ- 83 usage_00155.pdb 48 WDVGG-----QD-----KIRPLWRH-YFQNTQGLIFVVDSND-RERV------------- 82 usage_00232.pdb 49 WDLGG-----LT-----SIRPYWRC-YYSNTDAVIYVVDSCD-RDR----I--------- 83 usage_00235.pdb 42 IDTGG----PFL-----AQIRQQAEIAMDEADVIIFMVNGRE-G-----VTAADEEVAKI 86 i vd usage_00024.pdb ---- usage_00025.pdb ---- usage_00088.pdb 92 LEE- 94 usage_00090.pdb 95 MLA- 97 usage_00094.pdb ---- usage_00095.pdb 95 MLAE 98 usage_00096.pdb ---- usage_00112.pdb 94 MLN- 96 usage_00127.pdb 93 VG-- 94 usage_00137.pdb 92 MLA- 94 usage_00143.pdb 82 MLNE 85 usage_00144.pdb ---- usage_00155.pdb ---- usage_00232.pdb ---- usage_00235.pdb 87 LY-- 88 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################