################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:24:50 2021 # Report_file: c_1411_9.html ################################################################################################ #==================================== # Aligned_structures: 6 # 1: usage_00308.pdb # 2: usage_00521.pdb # 3: usage_00743.pdb # 4: usage_00813.pdb # 5: usage_00839.pdb # 6: usage_00840.pdb # # Length: 104 # Identity: 16/104 ( 15.4%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 23/104 ( 22.1%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 35/104 ( 33.7%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00308.pdb 1 -QFLRWFQEWTENFCTKRNELYENMVTAC----------------E-CTEACKNYSNFIL 42 usage_00521.pdb 1 -QFLRWFQEWSENFCDRRQKLYDKLNSECI-SAECTNGS---VDNSKCTHACVNYKNYIL 55 usage_00743.pdb 1 DQSVSWFKEWGEQFCIERLRYEQNIREACTI-CINSKSGDKI--QGACKRKCEKYKKYIS 57 usage_00813.pdb 1 -QFFRWFSEWGDDYCQDKTKMIETLKVEC-------------CEDDNCKRKCNSYKEWIS 46 usage_00839.pdb 1 -QFFRWFSEWGDDYCQDKTKMIETLKVEC-----------------NCKRKCNSYKEWIS 42 usage_00840.pdb 1 -QFFRWFSEWGDDYCQDKTKMIETLKVEC-----------------NCKRKCNSYKEWIS 42 Qf rWF EW C C C C Yk I usage_00308.pdb 43 IKKKEYQSLNSQYDMNYKETKA--------EKKESPEYFKDKCN 78 usage_00521.pdb 56 TKKTEYEIQTNKYDNEFKNKNS--------NDKDAPDYLKEK-- 89 usage_00743.pdb 58 EKKQEWDKQKTKYENKY-------------VGKSASDLLKENY- 87 usage_00813.pdb 47 KKKEEYNKQAKQYQEYQ-KGN-NYKMYSEFKSIKPEVYLKK--- 85 usage_00839.pdb 43 KKKEEYNKQAKQYQEYQ-KGN-NYKMYSEFKSIKPEVYLKK--- 81 usage_00840.pdb 43 KKKEEYNKQAKQYQEYQ-KGN-NYKMYSEFKSIKPEVYLKK--- 81 KK Ey q Y ylK #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################