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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Thu Jan 21 00:03:27 2021
# Report_file: c_0404_5.html
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#====================================
# Aligned_structures: 9
#   1: usage_00017.pdb
#   2: usage_00079.pdb
#   3: usage_00109.pdb
#   4: usage_00203.pdb
#   5: usage_00204.pdb
#   6: usage_00223.pdb
#   7: usage_00271.pdb
#   8: usage_00274.pdb
#   9: usage_00359.pdb
#
# Length:         97
# Identity:       47/ 97 ( 48.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     54/ 97 ( 55.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           29/ 97 ( 29.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00017.pdb         1  RQVKPEAWLSH---------QLVCHVSGFYPKPVWVMWMRGE------QRGDILPSADGT   45
usage_00079.pdb         1  KQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMRGEQEQQGTQPGDILPNADET   60
usage_00109.pdb         1  RQVKPEAWLSSGPSPGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWT   60
usage_00203.pdb         1  RQVKPEAWLSHGPSPGPGHLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQRGDILPSADGT   60
usage_00204.pdb         1  RQVKPEAWLSHGPSPGPGHLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQRGDILPSADGT   60
usage_00223.pdb         1  KQEKPVAWLSSVPSSAHGHRQLVCHVSGFYPKPVWVMWMRGDQEQQGTHRGDFLPNADET   60
usage_00271.pdb         1  KQVKPKAWLSRGPSP----LLLVCHVSGFYPKPVWVKWMR---QQ-GTQPGDILPNADET   52
usage_00274.pdb         1  KQVKPEAWLSSGPSPGPGRLLLVCHVSGFYPKPVRVMWMRGEQEEPGTRQGDVMPNADST   60
usage_00359.pdb         1  ---KPEAWLSSGPSPGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNAQGT   57
                              KP AWLS           LVCHVSGFYPKPVwV WMR          GD lP A  T

usage_00017.pdb        46  WYLRATLE-------DLSCRVKHSSLEGQDIVLYW--   73
usage_00079.pdb        61  WYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYW--   95
usage_00109.pdb        61  WYLRATLDVADGEAAGLSCRVKHSSLEGQDIILYW--   95
usage_00203.pdb        61  WYLRATLEVAAGEAADLSCRVKHSSLEGQDIVLYW--   95
usage_00204.pdb        61  WYLRATLEVAAGEAADLSCRVKHSSLEGQDIVLYW--   95
usage_00223.pdb        61  WYLQATLDVEAGEEAGLACRVKHSSLGGQDIILYW--   95
usage_00271.pdb        53  WYLRATLDVVA---AGLSCRVKHSSLEGQDIVLYW--   84
usage_00274.pdb        61  WYLRVTLDVAAGEVAGLSCQVKHSSLGDQDIILYW--   95
usage_00359.pdb        58  WYLRATLDVADGEAAGLSCRVKHSSLEGQDIILYWHH   94
                           WYLraTL         LsCrVKHSSL gQDI LYW  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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