################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:12:39 2021 # Report_file: c_0461_109.html ################################################################################################ #==================================== # Aligned_structures: 9 # 1: usage_00002.pdb # 2: usage_00893.pdb # 3: usage_00903.pdb # 4: usage_01161.pdb # 5: usage_01162.pdb # 6: usage_01199.pdb # 7: usage_01200.pdb # 8: usage_01201.pdb # 9: usage_01202.pdb # # Length: 97 # Identity: 2/ 97 ( 2.1%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 6/ 97 ( 6.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 35/ 97 ( 36.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00002.pdb 1 --IGLLLPDM-SNPFFTLIARGVEDVALAHGYQVLIGNSD-----NDI-KKAQGYLATFV 51 usage_00893.pdb 1 NVIAAVVSSVR-TNFAQQILDGIQEEAHKNGYNLIIVY-----------HALLT----AI 44 usage_00903.pdb 1 GNIGVLVSRV-TNPFFAGLFDAIERELHAHGYQVMITQTY-----DDP-EAEERFLKQLK 53 usage_01161.pdb 1 KLIAVIVANI-DDYFSTELFKGISSILESRGYIGVLFDAN-----ADI-EREKTLLRAIG 53 usage_01162.pdb 1 --IAVIVANI-DDYFSTELFKGISSILESRGYIGVLFDAN-----ADI-EREKTLLRAIG 51 usage_01199.pdb 1 KTIGVIVPDI-TNPFFAQLIRGIESVLYKENFILILCNADQDVTRE-H-EYLTE----LI 53 usage_01200.pdb 1 KTIGVIVPDI-TNPFFAQLIRGIESVLYKENFILILCNADQDVTRE-H-EYLTE----LI 53 usage_01201.pdb 1 KTIGVLVPDI-TNPFFSTL-RGIEDILYKQNFVTILCNAD-----S--IEYLAE----LT 47 usage_01202.pdb 1 KTIGLMVPNI-SNPFFNQMASVIEEYAKNKGYTLFLCNTD-----DDK-EKEKTYLEVLQ 53 I v F i usage_00002.pdb 52 SHNCTGMISTAF---NENIIENTLTDHH-I-PFVFID 83 usage_00893.pdb 45 ERPVGIL-LLSI--ANLQLLQSS--------PYCFLS 70 usage_00903.pdb 54 SRELDGVILAS-VE-APDRVMAVAKA-FPGRVVV-VN 86 usage_01161.pdb 54 SRGFDGLILQS-FS-NPQTVQEILHQ-Q-M-PVVSVD 85 usage_01162.pdb 52 SRGFDGLILQS-FS-NPQTVQEILHQ-Q-M-PVVSVD 83 usage_01199.pdb 54 RRSVDGFVIAS-SEISNQTINETLRAKK-I-PFIVLD 87 usage_01200.pdb 54 RRSVDGFVIAS-SEISNQTINETLRAKK-I-PFIVLD 87 usage_01201.pdb 48 RRGVDGFIIAT-SAVSTDAINENLKKQG-R-PFIVLD 81 usage_01202.pdb 54 SHRVAGIIASR-SQ-CEDEYANI----D-I-PVVAF- 81 g p #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################