################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:21:51 2021 # Report_file: c_0121_25.html ################################################################################################ #==================================== # Aligned_structures: 10 # 1: usage_00082.pdb # 2: usage_00087.pdb # 3: usage_00133.pdb # 4: usage_00180.pdb # 5: usage_00240.pdb # 6: usage_00299.pdb # 7: usage_00362.pdb # 8: usage_00391.pdb # 9: usage_00492.pdb # 10: usage_00493.pdb # # Length: 135 # Identity: 50/135 ( 37.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 64/135 ( 47.4%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 21/135 ( 15.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00082.pdb 1 --QLVESGGGLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTT 58 usage_00087.pdb 1 -VKLVESGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTT 59 usage_00133.pdb 1 -VKLVESGGGLVQPGGSLSLSCAASGFTFSDYYMTWVRQAPGKAPEWLALIRNKRNGDTA 59 usage_00180.pdb 1 EVKLQESGGGLVQPGGSMKLSCVASGFTFNNYWMSWVRQSPEKGLEWVAEIRLNSDNFAT 60 usage_00240.pdb 1 -VKLQESGGGLVQPGHSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGLIRNKANGYTK 59 usage_00299.pdb 1 -VKLVESGGGLVQPGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKADGYTT 59 usage_00362.pdb 1 --QLVESGGGLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTT 58 usage_00391.pdb 1 -VQLVESGGGLVQPGGSLRLSCAASGFNFNDYFMNWVRQAPGKGLEWVAQMRNKNYQYGT 59 usage_00492.pdb 1 -VQLVESGGGLVQPGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTT 59 usage_00493.pdb 1 -VQLVESGGGLVQPGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTT 59 L ESGGGLV pGgSl L C SGFtF d WVRQ PgK lEW i usage_00082.pdb 59 DYAASVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYSCTTDGFIMIRGVSED--YYY--- 113 usage_00087.pdb 60 EYSPSVKGRFTISRDNSQSILYLQMNTLRAEDSATYYCARDH------D-------GYYE 106 usage_00133.pdb 60 EYSASVKGRFTISRDYSRSILHLQMNALRTEDSATYYCVRQG------R-------G--- 103 usage_00180.pdb 61 HYAESVKGKFIISRDDSKSRLYLQMNSLRAEDTGIYYCVLRP------L-------F-YY 106 usage_00240.pdb 60 EYSASVKGRFTISRDNSQSILYLQMNALRAEDSATYYCVRDK-----GSYGNYE------ 108 usage_00299.pdb 60 EYSASVKGRFTISRDNSQSILYLQMNTLRAEDSATYYCTRDP------Y-------G--- 103 usage_00362.pdb 59 DYAASVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYSCTTDGFIMIRGVSED--YYY--- 113 usage_00391.pdb 60 YYAESLEGRFTISRDDSKNSLYLQMNSLKTEDTAVYYCARES------Y-------Y--- 103 usage_00492.pdb 60 EYSASVKGRFTISRDNSQSILYLQMNTLRAEDSATYYCARDG------S-------Y--- 103 usage_00493.pdb 60 EYSASVKGRFTISRDNSQSILYLQMNTLRAEDSATYYCARDG------S-------Y--- 103 Y SvkGrFtISRD S LyLQMN L ED a Y C usage_00082.pdb 114 YYMDVWGKGTTVTVS 128 usage_00087.pdb 107 RF-SYWGQGTLVTV- 119 usage_00133.pdb 104 YTLDYWGQGTSVTVS 118 usage_00180.pdb 107 AV-DYWGQGTSVTVS 120 usage_00240.pdb 109 AWFAYWGQGTTVTVS 123 usage_00299.pdb 104 PA-AYWGQGTLVTVS 117 usage_00362.pdb 114 YYMDVWGKGTTVTV- 127 usage_00391.pdb 104 GFTSYWGQGTLVTVS 118 usage_00492.pdb 104 AM-DYWGQGTSVTVS 117 usage_00493.pdb 104 AM-DYWGQGTSVTVS 117 WG GT VTV #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################