################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:54:50 2021 # Report_file: c_0009_5.html ################################################################################################ #==================================== # Aligned_structures: 13 # 1: usage_00003.pdb # 2: usage_00004.pdb # 3: usage_00005.pdb # 4: usage_00030.pdb # 5: usage_00042.pdb # 6: usage_00043.pdb # 7: usage_00044.pdb # 8: usage_00045.pdb # 9: usage_00048.pdb # 10: usage_00049.pdb # 11: usage_00050.pdb # 12: usage_00065.pdb # 13: usage_00072.pdb # # Length: 331 # Identity: 49/331 ( 14.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 75/331 ( 22.7%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 60/331 ( 18.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00003.pdb 1 -AAEDAQTLRKAMKGLGTDEDAIINVLAYRSTAQRQEIRTAYKTTIGRDLMDDLKSELSG 59 usage_00004.pdb 1 --AEDAQTLRKAMKGLGTDEDAIINVLAYRSTAQRQEIRTAYKTTIGRDLMDDLKSELSG 58 usage_00005.pdb 1 -PDADAKALRKAMKGLGTDEDTIIDIITHRSNAQRQQIRQTFKSHFGRDLMADLKSELSG 59 usage_00030.pdb 1 -AAEDAQTLRKAMKGLGTDEDAIINVLAYRSTAQRQEIRTAYKTTIGRDLMDDLKSELSG 59 usage_00042.pdb 1 -ASADAERLHRSMKGPGTNELAIINILARRTNYERQEICQSYKSLYKQDLKDDLKSDTSG 59 usage_00043.pdb 1 SASADAERLHRSMKGPGTNELAIINILARRTNYERQEICQSYKSLYKQDLKDDLKSDTSG 60 usage_00044.pdb 1 ---PDAETLYKAMKGIGTNEQAIIDVLTKRSNTQRQQIAKSFKAQFGKDLTETLKSELSG 57 usage_00045.pdb 1 --DPDAETLYKAMKGIGTNEQAIIDVLTKRSNTQRQQIAKSFKAQFGKDLTETLKSELSG 58 usage_00048.pdb 1 -ATEDAQVLRKAMKGLGTDEDAIIGVLACRNTAQRQEIRTAYKSTIGRDLLEDLKSELSS 59 usage_00049.pdb 1 -AMEDAQTLRKAMKGLGTDEDAIISVLAYRNTAQRQEIRTAYKSTIGRDLIDDLKSELSG 59 usage_00050.pdb 1 --MEDAQTLRKAMKGLGTDEDAIISVLAYRNTAQRQEIRTAYKSTIGRDLIDDLKSELSG 58 usage_00065.pdb 1 -PSVDAEAIQKAIRGIGTDEKMLISILTERSNAQRQLIVKEYQAAYGKELKDDLKGDLSG 59 usage_00072.pdb 1 --DPDAETLYKAMKGIGTNEQAIIDVLTKRSNTQRQQIAKSFKAQFGKDLTETLKSELSG 58 DA l mkG GT E iI l R RQ I k dL LKs Sg usage_00003.pdb 60 NFEQVILGMMTPTVLYDVQELRKAMKGAGTDEGCLIEILASRTPEEIRRINQTYQLQYG- 118 usage_00004.pdb 59 NFEQVILGMMTPTVLYDVQEVRKAMKGAGTDEGCLIEILASRTPEEIRRINQTYQLQYG- 117 usage_00005.pdb 60 DLARLILGLMMPPAHYDAKQLKKAMEGAGTDEKALIEILATRTNAEIQAINKAYKEDYH- 118 usage_00030.pdb 60 NFEQVILGMMTPTVLYDVQELRKAMKGAGTDEGCLIEILASRTPEEIRRINQTYQLQYG- 118 usage_00042.pdb 60 DFRKVLCQLIVDTPYMLAKSLYYAMKGLGTNDRVLIEIFTTLWNDEMKAVADAYKQVLKD 119 usage_00043.pdb 61 DFRKVLCQLIVDTPYMLAKSLYYAMKGLGTNDRVLIEIFTTLWNDEMKAVADAYKQVLKD 120 usage_00044.pdb 58 KFERLIVALMYPPYRYEAKELHDAMKGLGTKEGVIIEILASRTKNQLREIMKAYEEDYG- 116 usage_00045.pdb 59 KFERLIVALMYPPYRYEAKELHDAMKGLGTKEGVIIEILASRTKNQLREIMKAYEEDYG- 117 usage_00048.pdb 60 NFEQVILGMMTPTVLYDVQELRRAMKGAGTDEGCLIEILASRNPEEIRRINQTYQQQYG- 118 usage_00049.pdb 60 NFEQVIVGMMTPTVLYDVQELRRAMKGAGTDEGCLIEILASRTPEEIRRISQTYQQQYG- 118 usage_00050.pdb 59 NFEQVIVGMMTPTVLYDVQELRRAMKGAGTDEGCLIEILASRTPEEIRRISQTYQQQYG- 117 usage_00065.pdb 60 HFEHLMVALVTPPAVFDAKQLKKSMKGAGTNEDALIEILTTRTSRQMKDISQAYYTVYK- 118 usage_00072.pdb 59 KFERLIVALMYPPYRYEAKELHDAMKGLGTKEGVIIEILASRTKNQLREIMKAYEEDYG- 117 f l aMkG GT IEI Y usage_00003.pdb 119 -------RSLEDDIR--SDTSFMFQRVLVSLSAGGRD-ES---------------NYLDD 153 usage_00004.pdb 118 -------RSLEDDIR--SDTSFMFQRVLVSLSAGGRD-ES---------------NYLDD 152 usage_00005.pdb 119 -------KTLEDALS--SDTSGHFKRILISLATGNRE-EG---------------G-EDR 152 usage_00030.pdb 119 -------RSLEDDIR--SDTSFMFQRVLVSLSAGGRD-ES---------------NYLDD 153 usage_00042.pdb 120 KGSEESERSLVTDMKKE-T-CGDYEYALLSLVQAERD-DIPILQLKAIPDKGVNS-IINH 175 usage_00043.pdb 121 KGSEESERSLVTDMKKE-T-CGDYEYALLSLVQAERD-DIPILQLKAIPDKGVNS-IINH 176 usage_00044.pdb 117 -------SSLEEDIQ--ADTSGYLERILVCLLQGSRDDVS---------------SFVDP 152 usage_00045.pdb 118 -------SSLEEDIQ--ADTSGYLERILVCLLQGSRDDVS---------------SFVDP 153 usage_00048.pdb 119 -------RSLEEDIC--SDTSFMFQRVLVSLTAGGRD-EG---------------NYLDD 153 usage_00049.pdb 119 -------RSLEDDIR--SDTSFMFQRVLVSLSAGGRD-EG---------------NYLDD 153 usage_00050.pdb 118 -------RSLEDDIR--SDTSFMFQRVLVSLSAGGRD-EG---------------NYLDD 152 usage_00065.pdb 119 -------KSLGDDIS--SETSGDFRKALLTLADGRRD-ES---------------LKVDE 153 usage_00072.pdb 118 -------SSLEEDIQ--ADTSGYLERILVCLLQGSRDDVS---------------SFVDP 153 sL d L L Rd usage_00003.pdb 154 ALMRQDAQDLYEAGEKK-WGTDEVKFLTVLCSRNRNHLLHVFDEYKRIAQKDIEQSIKSE 212 usage_00004.pdb 153 ALMRQDAQDLYEAGEKK-WGTDEVKFLTVLCSRNRNHLLHVFDEYKRIAQKDIEQSIKSE 211 usage_00005.pdb 153 ERAREDAQVAAEIL---------TRFMMILCTRSYPDLRRVFQEFVKMTNYDVEHTIKKE 203 usage_00030.pdb 154 ALMRQDAQDLYEAGEKK-WGTDEVKFLTVLCSRNRNHLLHVFDEYKRIAQKDIEQSIKSE 212 usage_00042.pdb 176 ELAEADAKDLYASGAGRVGTS-ERRITRVICNRTPYQLYLTSEIYFKMYGKTLLEHIESE 234 usage_00043.pdb 177 ELAEADAKDLYASGAGRVGTS-ERRITRVICNRTPYQLYLTSEIYFKMYGKTLLEHIESE 235 usage_00044.pdb 153 ALALQDAQDLYAAGEKI-RGTDEMKFITILCTRSATHLLRVFEEYEKIANKSIEDSIKSE 211 usage_00045.pdb 154 ALALQDAQDLYAAGEKI-RGTDEMKFITILCTRSATHLLRVFEEYEKIANKSIEDSIKSE 212 usage_00048.pdb 154 ALVKQDAQDLYEAGEKR-WGTDEVKFLSILCSRNRNHLLHVFDEYKRISQKDIEQSIKSE 212 usage_00049.pdb 154 ALVRQDAQDLYEAGEKK-WGTDEVKFLTVLCSRNRNHLLHVFDEYKRISQKDIEQSIKSE 212 usage_00050.pdb 153 ALVRQDAQDLYEAGEKK-WGTDEVKFLTVLCSRNRNHLLHVFDEYKRISQKDIEQSIKSE 211 usage_00065.pdb 154 HLAKQDAQILYKAGENR-WGTDEDKFTEILCLRSFPQLKLTFDEYRNISQKDIVDSIKGE 212 usage_00072.pdb 154 ALALQDAQDLYAAGEKI-RGTDEMKFITILCTRSATHLLRVFEEYEKIANKSIEDSIKSE 212 l DA ly g C R L y k I E usage_00003.pdb 213 TSGSFEDALLAIVKCMRNKSAYFAERLYKSMKGL-GT-DDDTLIRVMVSRAEIDMLDIRA 270 usage_00004.pdb 212 TSGSFEDALLAIVKCMRNKSAYFAERLYKSMKGL-GT-DDDTLIRVMVSRAEIDMLDIRA 269 usage_00005.pdb 204 MSGDVRDVFVAIVQSVKNKPLFFADKLYKSMKGA-GT-EEKTLTRIMVSRSEIDLLNIRR 261 usage_00030.pdb 213 TSGSFEDALLAIVKCMRNKSAYFAERLYKSMKGL-GT-DDDTLIRVMVSRAEIDMLDIRA 270 usage_00042.pdb 235 TSGDYRKLLVAVLRYAIDRPSLIAEWLHDSMAGLG-TK-DYALMRLLITRSEIDLQDIMD 292 usage_00043.pdb 236 TSGDYRKLLVAVLRYAIDRPSLIAEWLHDSMAGLG-TK-DYALMRLLITRSEIDLQDIMD 293 usage_00044.pdb 212 THGSLEEAMLTVVKCTQNLHSYFAERLYYAMKGA-GT-RDGTLIRNIVSRSEIDLNLIKC 269 usage_00045.pdb 213 THGSLEEAMLTVVKCTQNLHSYFAERLYYAMKGA-GT-RDGTLIRNIVSRSEIDLNLIKC 270 usage_00048.pdb 213 TSGSFEDALLAIVKCMRNKPAYFAERLYKSMKGL-GT-DDSTLIRVMVSRAEIDMLDIRA 270 usage_00049.pdb 213 TSGSFEDALLAIVKCMRNKSAYFAEKLYKSMKGL-GT-DDNTLIRVMVSRAEIDMLDIRA 270 usage_00050.pdb 212 TSGSFEDALLAIVKCMRNKSAYFAEKLYKSMKGL-GT-DDNTLIRVMVSRAEIDMLDIRA 269 usage_00065.pdb 213 LSGHFEDLLLAIVNCVRNTPAFLAERLHRALKGI-GT-DEFTLNRIMVSRSEIDLLDIRT 270 usage_00072.pdb 213 THGSLEEAMLTVVKCTQNLHSYFAERLYYAMKGA-GT-RDGTLIRNIVSRSEIDLNLIKC 270 G Ae L m G T L R R EID I usage_00003.pdb 271 NFKRLYGKSLYSFIKGDTSGDYRKVLLILCG 301 usage_00004.pdb 270 NFKRLYGKSLYSFIKGD-------------- 286 usage_00005.pdb 262 EFIEKYDKSLHQAIEGDTSGHFLKALLAICG 292 usage_00030.pdb 271 NFKRLYGKSLYSFIKGDTSGDYRKVLLILCG 301 usage_00042.pdb 293 AYESIYGKSLLNAVKDDTSGDYRRTLCVLMG 323 usage_00043.pdb 294 AYESIYGKSLLNAVKDDTSGDYRRTLCVLMG 324 usage_00044.pdb 270 HFKKMYGKTLSSMIMEDTSGDYKNALLSLVG 300 usage_00045.pdb 271 HFKKMYGKTLSSMIMEDTSGDYKNALLSLVG 301 usage_00048.pdb 271 NFKRLYGKSLYSFIKGDTSGDYRKVLLILCG 301 usage_00049.pdb 271 HFKRLYGKSLYSFIKGDTSGDYRKVLLVLCG 301 usage_00050.pdb 270 HFKRLYGKSLYSFIKGDTSGDYRKVLLVLCG 300 usage_00065.pdb 271 EFKKHYGYSLYSAIKSDTSGDYEITLLKICG 301 usage_00072.pdb 271 HFKKMYGKTLSSMIMEDTSGDYKNALLSLVG 301 Ygk L D #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################