################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:20:55 2021 # Report_file: c_0233_5.html ################################################################################################ #==================================== # Aligned_structures: 15 # 1: usage_00054.pdb # 2: usage_00055.pdb # 3: usage_00056.pdb # 4: usage_00057.pdb # 5: usage_00058.pdb # 6: usage_00059.pdb # 7: usage_00060.pdb # 8: usage_00061.pdb # 9: usage_00062.pdb # 10: usage_00082.pdb # 11: usage_00084.pdb # 12: usage_00085.pdb # 13: usage_00086.pdb # 14: usage_00087.pdb # 15: usage_00088.pdb # # Length: 185 # Identity: 53/185 ( 28.6%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 155/185 ( 83.8%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 29/185 ( 15.7%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00054.pdb 1 -KVLLKVIILGDSGVGKTSLMNQYVNKKFSN------IG--ADFLTKEVMVDDRLVTMQI 51 usage_00055.pdb 1 --VLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-KAT--IGADFLTKEVMVDDRLVTMQI 55 usage_00056.pdb 1 -KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-KAT--IGADFLTKEVMVDDRLVTMQI 56 usage_00057.pdb 1 --VLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-KAT--IGADFLTKEVMVDDRLVTMQI 55 usage_00058.pdb 1 --VLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-KAT--IGADFLTKEVMVDDRLVTMQI 55 usage_00059.pdb 1 -KVLLKVIILGDSGVGKTSLMNQYVNKKFSN------IG--ADFLTKEVMVDDRLVTMQI 51 usage_00060.pdb 1 -KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQY----IG--ADFLTKEVMVDDRLVTMQI 53 usage_00061.pdb 1 -KVLLKVIILGDSGVGKTSLMNQYVNKKFSN------IG--ADFLTKEVMVDDRLVTMQI 51 usage_00062.pdb 1 -KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQY----IG--ADFLTKEVMVDDRLVTMQI 53 usage_00082.pdb 1 --VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTI-G--VDFLERQIQVNDEDVRLML 55 usage_00084.pdb 1 -KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-KAT--IGADFLTKEVMVDDRLVTMQI 56 usage_00085.pdb 1 -KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-KAT--IGADFLTKEVMVDDRLVTMQI 56 usage_00086.pdb 1 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-KAT--IGADFLTKEVMVDDRLVTMQI 57 usage_00087.pdb 1 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-KAT--IGADFLTKEVMVDDRLVTMQI 57 usage_00088.pdb 1 -KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-KAT--IGADFLTKEVMVDDRLVTMQI 56 VllKviilGdsgVGKtSlmnqYvnkkFsn aDFLtkevmVdDrlVtmqi usage_00054.pdb 52 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 111 usage_00055.pdb 56 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 115 usage_00056.pdb 57 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 116 usage_00057.pdb 56 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 115 usage_00058.pdb 56 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 115 usage_00059.pdb 52 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 111 usage_00060.pdb 54 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 113 usage_00061.pdb 52 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 111 usage_00062.pdb 54 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 113 usage_00082.pdb 56 WDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG---D--IPTA 110 usage_00084.pdb 57 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 116 usage_00085.pdb 57 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 116 usage_00086.pdb 58 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 117 usage_00087.pdb 58 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 117 usage_00088.pdb 57 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 116 WDTAGQErFqslgvAfYRGAdcCVLVFdvTapntFktldSWRdefliqas p fPfv usage_00054.pdb 112 VLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 170 usage_00055.pdb 116 VLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 174 usage_00056.pdb 117 VLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 175 usage_00057.pdb 116 VLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 174 usage_00058.pdb 116 VLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 174 usage_00059.pdb 112 VLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQET-- 168 usage_00060.pdb 114 VLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 172 usage_00061.pdb 112 VLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE--- 167 usage_00062.pdb 114 VLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 172 usage_00082.pdb 111 LVQNKIDLLDDSCIKNEEAEGLAKR-LKLRFYRTSVKEDLNVSEVFKYLAEKHLQ----- 164 usage_00084.pdb 117 VLGNKIDF-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE- 174 usage_00085.pdb 117 VLGNKIDF-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 175 usage_00086.pdb 118 VLGNKIDF-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE- 175 usage_00087.pdb 118 VLGNKIDF-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 176 usage_00088.pdb 117 VLGNKIDF-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQET-- 173 vlgNKID enrqvatkrAqawcys nnipyfeTSaKEaiNVeqaFqtiArnaLk usage_00054.pdb 171 ELYN- 174 usage_00055.pdb 175 ELYNE 179 usage_00056.pdb 176 ELY-- 178 usage_00057.pdb 175 ELYN- 178 usage_00058.pdb 175 ELYNE 179 usage_00059.pdb ----- usage_00060.pdb ----- usage_00061.pdb ----- usage_00062.pdb 173 E---- 173 usage_00082.pdb ----- usage_00084.pdb ----- usage_00085.pdb ----- usage_00086.pdb ----- usage_00087.pdb ----- usage_00088.pdb ----- #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # 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