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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Wed Jan 20 23:12:16 2021
# Report_file: c_0635_8.html
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#====================================
# Aligned_structures: 5
#   1: usage_00005.pdb
#   2: usage_00009.pdb
#   3: usage_00010.pdb
#   4: usage_00016.pdb
#   5: usage_00017.pdb
#
# Length:        125
# Identity:       34/125 ( 27.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     46/125 ( 36.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           14/125 ( 11.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00005.pdb         1  GAGNVTKLANQVIVALNIAA-SEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPV-D   58
usage_00009.pdb         1  -DGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQAL-GGFASSRILEVHGERIN   58
usage_00010.pdb         1  --GQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQAL-GGFASSRILEVHGERIN   57
usage_00016.pdb         1  GSGQLTKLANQ-IVGITIGAVAEALLFATKGGAD-AKVKEAITGGFADSRVLQLHGQRVE   58
usage_00017.pdb         1  -SGQLTKLANQ-IVGITIGAVAEALLFATKGGAD-AKVKEAITGGFADSRVLQLHGQRVE   57
                             Gq  K ANQ IV   I A  EAL fA K Gad   V  A  GGfA Sr L  hg r  

usage_00005.pdb        59  RNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAV-E--QALRADGHGNDDHSALACYY  115
usage_00009.pdb        59  RTFEPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSA-VQAL  117
usage_00010.pdb        58  RTFEPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSA-VQAL  116
usage_00016.pdb        59  RDFAPRARLSIQLKD-RNALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLFVEL  117
usage_00017.pdb        58  RDFAPRARLSIQLKD-RNALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLFVEL  116
                           R F P        KD   AL  a       P T             G   lD S     l

usage_00005.pdb       116  EKLA-  119
usage_00009.pdb       118  ELA--  120
usage_00010.pdb       117  ELA--  119
usage_00016.pdb       118  ASR--  120
usage_00017.pdb       117  ASRNG  121
                                


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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