################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 05:39:37 2021 # Report_file: c_0152_3.html ################################################################################################ #==================================== # Aligned_structures: 41 # 1: usage_00001.pdb # 2: usage_00005.pdb # 3: usage_00012.pdb # 4: usage_00029.pdb # 5: usage_00035.pdb # 6: usage_00052.pdb # 7: usage_00059.pdb # 8: usage_00074.pdb # 9: usage_00083.pdb # 10: usage_00084.pdb # 11: usage_00096.pdb # 12: usage_00099.pdb # 13: usage_00104.pdb # 14: usage_00105.pdb # 15: usage_00114.pdb # 16: usage_00115.pdb # 17: usage_00116.pdb # 18: usage_00117.pdb # 19: usage_00127.pdb # 20: usage_00128.pdb # 21: usage_00129.pdb # 22: usage_00130.pdb # 23: usage_00131.pdb # 24: usage_00132.pdb # 25: usage_00137.pdb # 26: usage_00138.pdb # 27: usage_00139.pdb # 28: usage_00140.pdb # 29: usage_00153.pdb # 30: usage_00154.pdb # 31: usage_00158.pdb # 32: usage_00171.pdb # 33: usage_00180.pdb # 34: usage_00197.pdb # 35: usage_00198.pdb # 36: usage_00210.pdb # 37: usage_00212.pdb # 38: usage_00223.pdb # 39: usage_00226.pdb # 40: usage_00233.pdb # 41: usage_00234.pdb # # Length: 120 # Identity: 13/120 ( 10.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 28/120 ( 23.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 30/120 ( 25.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 ----VMTQSPSSLTVTTGEKVTMTCKSSQSLLNSRTQK--NYLTWYQQKPGQSPKLLIYW 54 usage_00005.pdb 1 ----VMTQSPSSLTVTAGEKVTMSCKSSQSLLNSGNQK--NYLTWYQQKPGQPPKLLIYW 54 usage_00012.pdb 1 -L--VMTQTPLSLPVSLGDQASISCRSSQSLVHS-NGN--TYLHWYLQKPGQSPKFLIYK 54 usage_00029.pdb 1 -I--VMSQSPSSLAVSAGEKVTMSCKSSQSLLN----K--NYLAWYQQKPGQSPTKLIYW 51 usage_00035.pdb 1 -I--VLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQK--NYLAWYQQKPGQSPKLLISW 55 usage_00052.pdb 1 ----VMSQSPSSLAVSVGEKVTMTCKSSQSLLYSSNQM--NYLAWYQQKPGQSPKLLIYW 54 usage_00059.pdb 1 DI--QMTQSPSSLAVSPGEKVTMSCRSSQSLFNSRTRK--NYLAWYQQKPGQSPTKLIYW 56 usage_00074.pdb 1 -I--VMTQSPSSLSVSAGERVTMSCKSSQSLLNSGNQK--NFLAWYQQKPGQPPKLLIYG 55 usage_00083.pdb 1 -I--VMSQSPSSLAVSVGEKVSMSCKSSQSLFYSSYQK--DLLAWYQQKPGQSPKLLIYW 55 usage_00084.pdb 1 -I--VMSQSPSSLAVSVGEKVSMSCKSSQSLFYSSYQK--DLLAWYQQKPGQSPKLLIYW 55 usage_00096.pdb 1 ----VMTQSPDSLAVSLGERATINCKSSQSVLYSSNSK--NYLAWYQQKPGQPPKLLIYW 54 usage_00099.pdb 1 -I--VMTQSPDSLAVSLGERATINCKSSQSVTF--NYK--NYLAWYQQKPGQPPKLLIYW 53 usage_00104.pdb 1 -I--VMSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRK--NYLAWYQQKPGQSPKVLIYW 55 usage_00105.pdb 1 ----VMTQTPSSLAMSVGQKVTMSCKSSQSLLNISNQK--NYLAWYQQKPGQSPKLLVYF 54 usage_00114.pdb 1 QI--VMTQSPSSLTVTAGEKVTMSCKSSQSLLNSGNQK--NYLTWYQQKPGQPPKLLIYW 56 usage_00115.pdb 1 -P--SALTQPPSASGSLGQSVTISCTGTSSDVG-----GYNYVSWYQQHAGKAPKVIIYE 52 usage_00116.pdb 1 ----VMSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRK--NYLAWYQQKPGQSPKLLIYW 54 usage_00117.pdb 1 ----VMSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRK--NYLAWYQQKPGQSPKLLIYW 54 usage_00127.pdb 1 DI--VMTQSPSSLAVSAGEKVTMSCRSSQSLYYSGIKK--NLLAWYQLKPGQSPKLLIYY 56 usage_00128.pdb 1 ----VMSQSPDSLAVSLGERVTLNCKSSQSLLYSGNQK--NYLAWYQQKPGQSPKLLIYW 54 usage_00129.pdb 1 ----VMSQSPDSLAVSLGERVTLNCKSSQSLLYSGNQK--NYLAWYQQKPGQSPKLLIYW 54 usage_00130.pdb 1 DI--VMSQSPDSLAVSLGERVTLNCKSSQSLLYSGNQK--NYLAWYQQKPGQSPKLLIYW 56 usage_00131.pdb 1 DI--VMSQSPDSLAVSLGERVTLNCKSSQSLLYSGNQK--NYLAWYQQKPGQSPKLLIYW 56 usage_00132.pdb 1 ----LLTQSPDSLAVTLGETATITCRSSRNILHSLNNK--NYLAWYQQRPGQAPKLLVIW 54 usage_00137.pdb 1 -I--VMSQSPSSLAVSVGEKVTMSCKSSQSLLYNNNQK--NYLAWYQQKPGQSPKLLIYW 55 usage_00138.pdb 1 -L--VMSQSPSSLAVSAGEKVTMSCKSSQSLFNSRTRK--NYLAWYQQKPGQSPKLLIYW 55 usage_00139.pdb 1 -L--VMSQSPSSLAVSAGEKVTMSCKSSQSLFNSRTRK--NYLAWYQQKPGQSPKLLIYW 55 usage_00140.pdb 1 ----EMTQSPLTLSVTTGQPASISCKSSQSLLDS-DGK--TYLNWLLQRPGQSPKRLIYL 53 usage_00153.pdb 1 --EL-VTQSPDSLAVSLGERATINCKSSQSVLYSSNNK--SYLAWYQQKPGQPPKLLIYW 55 usage_00154.pdb 1 --EL-VTQSPDSLAVSLGERATINCKSSQSVLYSSNNK--SYLAWYQQKPGQPPKLLIYW 55 usage_00158.pdb 1 ----VMTQSPSSLAVSAGEKVTMSCKSSQSLFKSRNQK--NYLAWYQQKPGQSPKLLIYW 54 usage_00171.pdb 1 DI--VMTQSPDSLAVSLGERATINCKSSQSVLYSSNNK--NYLAWYQQKPGQPPKLLIYW 56 usage_00180.pdb 1 -I--EMTQSPSSLGVSVGEKVTMSCKSSQNLLYSSNQK--NYLAWYQQKPGQSPKLLIYW 55 usage_00197.pdb 1 -I--VMTQSPSSLSVSAGEKVTLSCKSSQSLLHSGNQK--NYLAWYQQKPGQAPKLLIYG 55 usage_00198.pdb 1 ----VMSQSPSSLAVSVGEKITMSCKSSQSLLYSNNEK--NYLAWYQQKPGQSPKLLIYW 54 usage_00210.pdb 1 ----VMTQSPDSLAVSLGERATINCKSSQSVLYSSNSK--NYLAWYQDKPGQPPKLLIYW 54 usage_00212.pdb 1 -I--VMTQSPFSLAVSEGEMVTINCKSSQSLLSSGNQK--NYLAWYQQKPGQSPKLLIYY 55 usage_00223.pdb 1 -I--VMTQSPLTLSVTIGQPASISCKSSQSLLYS-NGK--TYLNWLLQRPGQSPKRLIHL 54 usage_00226.pdb 1 DI--VMTQAAPSVPVTPGESVSISCRSSKSLLH---GN--TYLYWFLQRPGQSPQLL--- 50 usage_00233.pdb 1 -I--VLTQSPSSLAVSAGERVTMSCKSSQSLFKSRNQK--NYLAWYQQKPGQSPKLLIYW 55 usage_00234.pdb 1 ----VMSQSPSSLAVSVGEKVTMSCKSSQSLLYSSNEK--NYLAWYQQKPGQSPKLLIYW 54 q p G C ss l W pGq P l usage_00001.pdb 55 ASTRESGVPDRFTGSGSGTDFTLSISGVQAEDLAVYYCQNNYNYPLTFGAG-TKLELKRA 113 usage_00005.pdb 55 ASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCQNDYSYPLTFGAG-TKLEP--- 110 usage_00012.pdb 55 VSNRFSGVPDRFGGSGSGTDFILKISRVEAEDLGVYFCFQSTHFFPTFGGG-TKLE---- 109 usage_00029.pdb 52 ASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYDLPTFGAG--TKLELKRS 109 usage_00035.pdb 56 AFTRKSGVPDRFTGSGSGTDFTLTIGSVKAEDLAVYYCQQYSNYPWTFGGG-TRLEI--- 111 usage_00052.pdb 55 ASTRESGVPDRFTGSGSGTDFTLTISSVEAEDLAVYYCQQYHSYPFTFGSG-TKLEIKRA 113 usage_00059.pdb 57 ASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAIYYCKQSYDLPTFGAGT-KLEL---- 111 usage_00074.pdb 56 ASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCQNDHSYPLTFGAG-TKLEL--- 111 usage_00083.pdb 56 ASTRESGVPDRFTGSGSGTDFTLTISSVKAEDLAVYFCQQYYTYPLTFGAG-TKLEL--- 111 usage_00084.pdb 56 ASTRESGVPDRFTGSGSGTDFTLTISSVKAEDLAVYFCQQYYTYPLTFGAG-TKLEL--- 111 usage_00096.pdb 55 ASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTPYSFGQG-TKLEI--- 110 usage_00099.pdb 54 ASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQHYRTPPTFGQG-TKVEI--- 109 usage_00104.pdb 56 ASTRESGVPDRFTGRGSGTDFTLTISSVQAEDQAVYYCKQAYIPPLTFGAG-TKLEL--- 111 usage_00105.pdb 55 ASTRESGVPDRFIGSGSGTDFTLTISSVQAEDQADYFCQQHYRAPRTFGGG-TKLEIK-- 111 usage_00114.pdb 57 ASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCQNDYSYPLTFGAG-TKLELKRA 115 usage_00115.pdb 53 VNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVLG- 111 usage_00116.pdb 55 ASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSFYLRTFGGGT-KLDI---- 109 usage_00117.pdb 55 ASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSFYLRTFGGGT-KLDIK-RA 112 usage_00127.pdb 57 ASTLFTGVPDRFTGSGSGTDYTLTITSVQAEDMGQYFCQQGISNPYTFGAG-TKLEIKRA 115 usage_00128.pdb 55 ASARESGVPDRFSGSGSGTDFTLTISSVQAEDVAVYYCQQYYSYPLTFGAG-TKLELKRT 113 usage_00129.pdb 55 ASARESGVPDRFSGSGSGTDFTLTISSVQAEDVAVYYCQQYYSYPLTFGAG-TKLELKRT 113 usage_00130.pdb 57 ASARESGVPDRFSGSGSGTDFTLTISSVQAEDVAVYYCQQYYSYPLTFGAG-TKLELKRT 115 usage_00131.pdb 57 ASARESGVPDRFSGSGSGTDFTLTISSVQAEDVAVYYCQQYYSYPLTFGAG-TKLEL--- 112 usage_00132.pdb 55 ASMRVSGVADRFSGSGSGTDFALTISSLQPEDAAVYYCQHYYTTHRTFGQG-TRVEIRRT 113 usage_00137.pdb 56 ASTRESGVPDRFTGSGSGTDFTLTISSVKAEDLAVYYCQQYYSYPFTFGSG-TKLEIKRA 114 usage_00138.pdb 56 ASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYHMYTFGSG-TKLEI--- 111 usage_00139.pdb 56 ASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYHMYTFGSG-TKLEI--- 111 usage_00140.pdb 54 VSKVDSGVPDRFTGSGSGTDFTLKISRVEAEDLGVYYCWQGTHSPLTFGAG-TKLEL--- 109 usage_00153.pdb 56 ASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSAPLTFGGG-TKVEI--- 111 usage_00154.pdb 56 ASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSAPLTFGGG-TKVEI--- 111 usage_00158.pdb 55 ASTRESGVPDRFTGSGSGTDFTLTINGVQAEDLAVYYCKQSYNLRTFGGGT-KLEL---- 109 usage_00171.pdb 57 ASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTPLTFGQG-TKVEI--- 112 usage_00180.pdb 56 ASTRESGVPDRFTGTGSGTDFTLTISSVKAEDLAVYYCQQYYSYPLTFGAG-TKLEL--- 111 usage_00197.pdb 56 ASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCQNDHSYPLTFGAG-TKLEL--- 111 usage_00198.pdb 55 ASARDSGVPDRFTGSGSGTDFTLTISSVKAEDLAVFYCQQYYSYPYTFGGG-TKLEI--- 110 usage_00210.pdb 55 ASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTPYSFGQG-TKLEI--- 110 usage_00212.pdb 56 ASTGQSGVPDRFIGSGSGTDFTLTISDVQAEDLADYYCLQHYISPPTFGAG-TKLEL--- 111 usage_00223.pdb 55 VSKLDSGVPDRITGSGSGTDFTLKISRVEAADLGVYYCVQGTHFPYTFGGG-TKLEI--- 110 usage_00226.pdb 51 ---------DRFSGSGSGTAFTLRISRVEAEDVGVYYCMQHLEYPYTFGGG-TRLEV--- 97 usage_00233.pdb 56 ASTRESGVPDRFTGSGSGTDFTLTINGVQAEDLAVYYCKQSYNLRTFGGGT-KLELK--- 111 usage_00234.pdb 55 ASTRESGVPDRFTGSGSGTDFTLTISSVKAEDLAVYYCQQYYSYPYTFGGG-TKLEI--- 110 DRf G gSGt L i aeD y C #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################