################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:32:42 2021 # Report_file: c_0521_7.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00003.pdb # 2: usage_00004.pdb # 3: usage_00011.pdb # 4: usage_00012.pdb # 5: usage_00013.pdb # 6: usage_00020.pdb # 7: usage_00025.pdb # 8: usage_00026.pdb # 9: usage_00031.pdb # 10: usage_00032.pdb # 11: usage_00085.pdb # # Length: 88 # Identity: 41/ 88 ( 46.6%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 41/ 88 ( 46.6%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 22/ 88 ( 25.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00003.pdb 1 --------------PLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDDARL 46 usage_00004.pdb 1 --------------------VTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDDARL 40 usage_00011.pdb 1 --------------------VTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDDARL 40 usage_00012.pdb 1 ---------------------TARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDDARL 39 usage_00013.pdb 1 PEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDDARL 60 usage_00020.pdb 1 PEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDDARL 60 usage_00025.pdb 1 --------------------VTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDDARL 40 usage_00026.pdb 1 --------------------VTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDDARL 40 usage_00031.pdb 1 ---------------------GPRLAEIKAQTLIVWGRNDRFVPMDAGLRLLSGIAGSEL 39 usage_00032.pdb 1 ---------------------GPRLAEIKAQTLIVWGRNDRFVPMDAGLRLLSGIAGSEL 39 usage_00085.pdb 1 ---------------------TARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDDARL 39 RL EIKA T I WGR DRFVP D GL LL I L usage_00003.pdb 47 HVFSKCGHWAQWEHADEFNRLVIDFLR- 73 usage_00004.pdb 41 HVFSKCGHWAQWEHADEFNRLVIDFLR- 67 usage_00011.pdb 41 HVFSKCGHWAQWEHADEFNRLVIDFLR- 67 usage_00012.pdb 40 HVFSKCGHWAQWEHADEFNRLVIDFLRH 67 usage_00013.pdb 61 HVFSKCGHWAQWEHADEFNRLVIDFLR- 87 usage_00020.pdb 61 HVFSKCGHWAQWEHADEFNRLVIDFLR- 87 usage_00025.pdb 41 HVFSKCGQWAQWEHADEFNRLVIDFLR- 67 usage_00026.pdb 41 HVFSKCGQWAQWEHADEFNRLVIDFLR- 67 usage_00031.pdb 40 HIFRDCGHWAQWEHADAFNQLVLNFLAR 67 usage_00032.pdb 40 HIFRDCGHWAQWEHADAFNQLVLNFLAR 67 usage_00085.pdb 40 HVFSKCGAWAQWEHADEFNRLVIDFLR- 66 H F CG WAQWEHAD FN LV FL #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################