################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 02:09:42 2021 # Report_file: c_0171_2.html ################################################################################################ #==================================== # Aligned_structures: 19 # 1: usage_00005.pdb # 2: usage_00042.pdb # 3: usage_00136.pdb # 4: usage_00208.pdb # 5: usage_00209.pdb # 6: usage_00210.pdb # 7: usage_00211.pdb # 8: usage_00212.pdb # 9: usage_00213.pdb # 10: usage_00214.pdb # 11: usage_00215.pdb # 12: usage_00216.pdb # 13: usage_00217.pdb # 14: usage_00218.pdb # 15: usage_00219.pdb # 16: usage_00220.pdb # 17: usage_00221.pdb # 18: usage_00222.pdb # 19: usage_00265.pdb # # Length: 201 # Identity: 29/201 ( 14.4%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 78/201 ( 38.8%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 64/201 ( 31.8%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00005.pdb 1 -DYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEV--ENKKIKAQIW 57 usage_00042.pdb 1 --FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVML--GTAAVKAQIW 56 usage_00136.pdb 1 ATLRCKVAVVGEATVGKSALISMFTS---------------VVAPVTIPDTTVSVELFLL 45 usage_00208.pdb 1 --YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV--DGKTIKAQIW 56 usage_00209.pdb 1 --YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV--DGKTIKAQIW 56 usage_00210.pdb 1 --YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV--DGKTIKAQIW 56 usage_00211.pdb 1 -DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV--DGKTIKAQIW 57 usage_00212.pdb 1 -DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV--DGKTIKAQIW 57 usage_00213.pdb 1 -DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV--DGKTIKAQIW 57 usage_00214.pdb 1 -DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV--DGKTIKAQIW 57 usage_00215.pdb 1 -DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV--DGKTIKAQIW 57 usage_00216.pdb 1 -DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV--DGKTIKAQIW 57 usage_00217.pdb 1 -DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV--DGKTIKAQIW 57 usage_00218.pdb 1 -DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV--DGKTIKAQIW 57 usage_00219.pdb 1 -DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV--DGKTIKAQIW 57 usage_00220.pdb 1 -DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV--DGKTIKAQIW 57 usage_00221.pdb 1 -DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV--DGKTIKAQIW 57 usage_00222.pdb 1 -DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV--DGKTIKAQIW 57 usage_00265.pdb 1 -DYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEV--ENKKIKAQIW 57 fK vliG sgVGKsnLlSrFT tr kaqiw usage_00005.pdb 58 DTA---GLERYRAITS---AYYRGAVGALIVYDISKSSSYENCNHWLTELRENA-DD--N 108 usage_00042.pdb 57 DTA---GLERYRAITS---AYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA-EA--T 107 usage_00136.pdb 46 DTAGSD-LYKEQIS-QYWN----GVYYAILVFDVSSMESFESCKAWFELLKSARPDRERP 99 usage_00208.pdb 57 DTA---GLERYRAITS---AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA-DS--N 107 usage_00209.pdb 57 DTA---GLERYRAITS---AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA-DS--N 107 usage_00210.pdb 57 DTA---GLERYRAITS---AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA-DS--N 107 usage_00211.pdb 58 DTA---GLERYRAITS---AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA-DS--N 108 usage_00212.pdb 58 DTA---GLERYRAITS---AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA-DS--N 108 usage_00213.pdb 58 DTA---GLERYRAITS---AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA-DS--N 108 usage_00214.pdb 58 DTA---GLERYRAITS---AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA-DS--N 108 usage_00215.pdb 58 DTA---GLERYRAITS---AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA-DS--N 108 usage_00216.pdb 58 DTA---GLERYRAITS---AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA-DS--N 108 usage_00217.pdb 58 DTA---GLERYRAITS---AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA-DS--N 108 usage_00218.pdb 58 DTA---GLERYRAITS---AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA-DS--N 108 usage_00219.pdb 58 DTA---GLERYRAITS---AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA-DS--N 108 usage_00220.pdb 58 DTA---GLERYRAITS---AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA-DS--N 108 usage_00221.pdb 58 DTA---GLERYRAITS---AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA-DS--N 108 usage_00222.pdb 58 DTA---GLERYRAITS---AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA-DS--N 108 usage_00265.pdb 58 DTA---GLERYRAITS---AYYRGAVGALIVYDISKSSSYENCNHWLTELRENA-DD--N 108 DTA Leryrai s GavgAl V D k ye Wl eL a d usage_00005.pdb 109 VAVGLIGNK-----SDLAHLRAVPTDEAKNFAMENQMLFTETS--ALNSDNVDKAFRELI 161 usage_00042.pdb 108 IVVMLVGNK-----SDLSQAREVPTEEARMFAENNGLLFLETS--ALDSTNVELAFETVL 160 usage_00136.pdb 100 LRAVLVANKPPQRH-------QVRLDMAQDWATTNTLDFFDVSNP--PGKDADAPFLSIA 150 usage_00208.pdb 108 IVIMLVGNK-----SDLRHLRAVPTDEARAFAEKNGLSFIETS--ALDSTNVEAAFQTIL 160 usage_00209.pdb 108 IVIMLVGNK-----SDLRHLRAVPTDEARAFAEKNGLSFIETS--ALDSTNVEAAFQTIL 160 usage_00210.pdb 108 IVIMLVGNK-----SDLRHLRAVPTDEARAFAEKNGLSFIETS--ALDSTNVEAAFQTIL 160 usage_00211.pdb 109 IVIMLVGNK-----SDLRHLRAVPTDEARAFAEKNGLSFIETS--ALDSTNVEAAFQTIL 161 usage_00212.pdb 109 IVIMLVGNK-----SDLRHLRAVPTDEARAFAEKNGLSFIETS--ALDSTNVEAAFQTIL 161 usage_00213.pdb 109 IVIMLVGNK-----SDLRHLRAVPTDEARAFAEKNGLSFIETS--ALDSTNVEAAFQTIL 161 usage_00214.pdb 109 IVIMLVGNK-----SDLRHLRAVPTDEARAFAEKNGLSFIETS--ALDSTNVEAAFQTIL 161 usage_00215.pdb 109 IVIMLVGNK-----SDLRHLRAVPTDEARAFAEKNGLSFIETS--ALDSTNVEAAFQTIL 161 usage_00216.pdb 109 IVIMLVGNK-----SDLRHLRAVPTDEARAFAEKNGLSFIETS--ALDSTNVEAAFQTIL 161 usage_00217.pdb 109 IVIMLVGNK-----SDLRHLRAVPTDEARAFAEKNGLSFIETS--ALDSTNVEAAFQTIL 161 usage_00218.pdb 109 IVIMLVGNK-----SDLRHLRAVPTDEARAFAEKNGLSFIETS--ALDSTNVEAAFQTIL 161 usage_00219.pdb 109 IVIMLVGNK-----SDLRHLRAVPTDEARAFAEKNGLSFIETS--ALDSTNVEAAFQTIL 161 usage_00220.pdb 109 IVIMLVGNK-----SDLRHLRAVPTDEARAFAEKNGLSFIETS--ALDSTNVEAAFQTIL 161 usage_00221.pdb 109 IVIMLVGNK-----SDLRHLRAVPTDEARAFAEKNGLSFIETS--ALDSTNVEAAFQTIL 161 usage_00222.pdb 109 IVIMLVGNK-----SDLRHLRAVPTDEARAFAEKNGLSFIETS--ALDSTNVEAAFQTIL 161 usage_00265.pdb 109 VAVGLIGNK-----SDLAHLRAVPTDEAKNFAMENQMLFTETS--ALNSDNVDKAFRELI 161 L gNK VptdeA fA N F etS s nv aF usage_00005.pdb 162 VAIFQMV-------------- 168 usage_00042.pdb 161 KEIFAKV-------------- 167 usage_00136.pdb 151 TTFYRNYEDKVAAFQDACRNY 171 usage_00208.pdb 161 TEIYRIVS------------- 168 usage_00209.pdb 161 TEIYRIVSQKQMS-------- 173 usage_00210.pdb 161 TEIYRIVSQKQMS-------- 173 usage_00211.pdb 162 TEIYRIVS------------- 169 usage_00212.pdb 162 TEIYRIVS------------- 169 usage_00213.pdb 162 TEIYRIVS------------- 169 usage_00214.pdb 162 TEIYRIVS------------- 169 usage_00215.pdb 162 TEIYRIVS------------- 169 usage_00216.pdb 162 TEIYRIVS------------- 169 usage_00217.pdb 162 TEIYRIVS------------- 169 usage_00218.pdb 162 TEIYRIVS------------- 169 usage_00219.pdb 162 TEIYRIVS------------- 169 usage_00220.pdb 162 TEIYRIVS------------- 169 usage_00221.pdb 162 TEIYRIVS------------- 169 usage_00222.pdb 162 TEIYRIVS------------- 169 usage_00265.pdb 162 VAIFQMV-------------- 168 i v #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################