################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:10:27 2021 # Report_file: c_1012_48.html ################################################################################################ #==================================== # Aligned_structures: 9 # 1: usage_00179.pdb # 2: usage_00338.pdb # 3: usage_00339.pdb # 4: usage_00365.pdb # 5: usage_00366.pdb # 6: usage_00540.pdb # 7: usage_00541.pdb # 8: usage_00616.pdb # 9: usage_00617.pdb # # Length: 71 # Identity: 16/ 71 ( 22.5%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 16/ 71 ( 22.5%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 31/ 71 ( 43.7%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00179.pdb 1 -----RVVLIGEQGVGKSTLANIFAG-------VHDSMDSD-----LG-EDTYERTLMVD 42 usage_00338.pdb 1 --ALYRVVLLGDPGVGKTSLASLFAG-------K---------HEQLG-EDVYERTLTVD 41 usage_00339.pdb 1 --ALYRVVLLGDPGVGKTSLASLFAG-------KQER----DLHEQLG-EDVYERTLTVD 46 usage_00365.pdb 1 --GVFKVMLLGESGVGKSTLAGTFG-------------------------DTYERRIMVD 33 usage_00366.pdb 1 --GVFKVMLLGESGVGKSTLAGTFGG-----------------------EDTYERRIMVD 35 usage_00540.pdb 1 --TYYRVVLIGEQGVGKSTLANIFAGVHDSEVL--------------G-EDTYERTLMVD 43 usage_00541.pdb 1 GMTYYRVVLIGEQGVGKSTLANIFAG-------V---------------EDTYERTLMVD 38 usage_00616.pdb 1 -----KVLLLGAPGVGKSALARIFGG-------VE-------------DGHTYDRSIVVD 35 usage_00617.pdb 1 --SVYKVLLLGAPGVGKSALARIFGG-------V---------------GHTYDRSIVVD 36 V L G GVGK LA F Y R VD usage_00179.pdb 43 GESATIILLD- 52 usage_00338.pdb 42 GEDTTLVVVDT 52 usage_00339.pdb 47 GEDTTLVVVD- 56 usage_00365.pdb 34 KEEVTLIVYD- 43 usage_00366.pdb 36 KEEVTLIVYD- 45 usage_00540.pdb 44 GESATIILLDM 54 usage_00541.pdb 39 GESATIILLDM 49 usage_00616.pdb 36 GEEASLMVYD- 45 usage_00617.pdb 37 GEEASLMVYD- 46 E D #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################