################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:00:02 2021 # Report_file: c_1396_232.html ################################################################################################ #==================================== # Aligned_structures: 8 # 1: usage_00794.pdb # 2: usage_00795.pdb # 3: usage_00796.pdb # 4: usage_00859.pdb # 5: usage_01025.pdb # 6: usage_01026.pdb # 7: usage_01027.pdb # 8: usage_01028.pdb # # Length: 117 # Identity: 4/117 ( 3.4%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 53/117 ( 45.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 47/117 ( 40.2%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00794.pdb 1 -TLGTDAQWVVFAVMALAAIVFSIAVQF---------------RPLPLRLTYYVNIAICT 44 usage_00795.pdb 1 -TLGTDAQWVVFAVMALAAIVFSIAVQF---------------RPLPLRLTYYVNIAICT 44 usage_00796.pdb 1 -TLGTDAQWVVFAVMALAAIVFSIAVQF---------------RPLPLRLTYYVNIAICT 44 usage_00859.pdb 1 -----DASDYTGVSFWLVTAALLASTVFFFVERDRVSAKWKTS----LTVSGLVTGIAFW 51 usage_01025.pdb 1 TETGMIAQWIVFAIMAAAAIAFGVAVHF---------------RP--LKSAYYINIAICT 43 usage_01026.pdb 1 TETGMIAQWIVFAIMAAAAIAFGVAVHF---------------RP--LKSAYYINIAICT 43 usage_01027.pdb 1 TETGMIAQWIVFAIMAAAAIAFGVAVHF---------------RP--LKSAYYINIAICT 43 usage_01028.pdb 1 TETGMIAQWIVFAIMAAAAIAFGVAVHF---------------RP--LKSAYYINIAICT 43 Aqw vfa ma aai f av F L yy niaict usage_00794.pdb 45 IAATAYYAMAVNG--GDNKPTAGTGADERQVIYARYIDWVFTTPLLLLDLVLLT--- 96 usage_00795.pdb 45 IAATAYYAMAVNG--GDNKPTAGTGADERQVIYARYIDWVFTTPLLLLDLVLLT--- 96 usage_00796.pdb 45 IAATAYYAMAVNG--GDNKPTAGTGADERQVIYARYIDWVFTTPLLLLDLVLLT--- 96 usage_00859.pdb 52 HYMYMRGVWIETGDS------------------PTVFRYIDWLLTVPLLICEFYLIL 90 usage_01025.pdb 44 IAATAYYAMAVNY--QDLTM-NG----ERQVVYARYIDWVLTTPLLLLDLIVMT--- 90 usage_01026.pdb 44 IAATAYYAMAVNY--QDLTM-NG----ERQVVYARYIDWVLTTPLLLLDLIVMT--- 90 usage_01027.pdb 44 IAATAYYAMAVNY--QDLTM-NG----ERQVVYARYIDWVLTTPLLLLDLIVMT--- 90 usage_01028.pdb 44 IAATAYYAMAVNY--QDLTM-NG----ERQVVYARYIDWVLTTPLLLLDLIVMT--- 90 iaatayyamavn aryidwv ttplllLdl t #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################