################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:41:01 2021 # Report_file: c_0785_112.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00001.pdb # 2: usage_00119.pdb # 3: usage_00192.pdb # 4: usage_00287.pdb # 5: usage_00428.pdb # 6: usage_00472.pdb # 7: usage_00604.pdb # 8: usage_00607.pdb # 9: usage_00768.pdb # 10: usage_00815.pdb # 11: usage_00892.pdb # # Length: 75 # Identity: 2/ 75 ( 2.7%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 5/ 75 ( 6.7%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 31/ 75 ( 41.3%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 -V-IMFVGFN-GSGKTTTIAKLANWLKNHGFSVVIAASDTF-RAGAIEQL---EEHAKRI 53 usage_00119.pdb 1 FV-ILMVGVN-GVGKTTTIGKLARQFEQQGKSVMLAAGDTF-RAAAVEQL---QVWGQRN 54 usage_00192.pdb 1 -V-ILMVGVN-GVGKTTTIGKLARQFEQQGKSVMLAAGDTF-RAAAVEQL---QVWGQRN 53 usage_00287.pdb 1 VA-VNIMGAI-GSGKTLLIERTIERIGN-EVKIGAMLGDVV-----SKAD---YERVRRF 49 usage_00428.pdb 1 AV-LMIVGVNGG-GKTTTLGKLANRFKKEGVKVLMAAGDT---AAAGEQL---EVWAQRT 52 usage_00472.pdb 1 -I-FMLVGVNGT-GKTTSLAKMANYYAELGYKVLIAAADTF-RAGATQQL---EEWIKTR 53 usage_00604.pdb 1 --LILEVGN----NKIYNIGQIIKKGN--FKRVSLYFGEGIYE-LFGETI---EKSIKSS 48 usage_00607.pdb 1 FV-ILMVGVN-GVGKTTTIGKLARQFEQQGKSVMLAAGDTF-RAAAVEQL---QVWGQRN 54 usage_00768.pdb 1 AV-IMIVGVN-GGGKTTSLGKLAHRLKNEGTKVLMAAGDTF-RAAASDQL---EIWAERT 54 usage_00815.pdb 1 -R-VGITGVP-GVGKSTTIDALGSLLTAAGHKVAVLAVDP----------SSRMARLAID 47 usage_00892.pdb 1 AV-IMIVGVN-GGGKTTSLGKLAHRLKNEGTKVLMAAGDTF-RAAASDQL---EIWAERT 54 G gK v d usage_00001.pdb 54 -GV---KVIK----- 59 usage_00119.pdb 55 -NI---PVIA-QH-- 62 usage_00192.pdb 54 -NI---PVIA-QH-- 61 usage_00287.pdb 50 -GI---KAEA--I-- 56 usage_00428.pdb 53 -GS---EIVM-A--- 59 usage_00472.pdb 54 -LNNKVDLVK----- 62 usage_00604.pdb 49 -NI---EIEA----- 54 usage_00607.pdb 55 -NI---PVIA----- 60 usage_00768.pdb 55 -GC---EIVV-A--- 61 usage_00815.pdb 48 RNA---FIRPSPSSG 59 usage_00892.pdb 55 -GC---EIVV-A--- 61 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################