################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:50:35 2021 # Report_file: c_0642_12.html ################################################################################################ #==================================== # Aligned_structures: 12 # 1: usage_00013.pdb # 2: usage_00015.pdb # 3: usage_00017.pdb # 4: usage_00042.pdb # 5: usage_00045.pdb # 6: usage_00048.pdb # 7: usage_00051.pdb # 8: usage_00054.pdb # 9: usage_00057.pdb # 10: usage_00113.pdb # 11: usage_00116.pdb # 12: usage_00118.pdb # # Length: 96 # Identity: 5/ 96 ( 5.2%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 9/ 96 ( 9.4%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 29/ 96 ( 30.2%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00013.pdb 1 --DDFLKLSTNIFGNYLVQSVIGISLATNDDG-YTKRQEKLKNFIS-S---QMTDMCLDK 53 usage_00015.pdb 1 STTLFVGLCHSRNGNFIVQKLVELA--------TPAEQRELLRQMI-DG--GLLAMCKDK 49 usage_00017.pdb 1 -KDDFLKLSTNIFGNYLVQSVIGISLATNDDG-YTKRQEKLKNFIS-S---QMTDMCLDK 54 usage_00042.pdb 1 --DDFLKLSTNIFGNYLVQSVIGISLATNDDG-YTKRQEKLKNFIS-S---QMTDMCLDK 53 usage_00045.pdb 1 --DDFLKLSTNIFGNYLVQSVIGISLATNDDG-YTKRQEKLKNFIS-S---QMTDMCLDK 53 usage_00048.pdb 1 --DDFLKLSTNIFGNYLVQSVIGISLATNDDG-YTKRQEKLKNFIS-S---QMTDMCLDK 53 usage_00051.pdb 1 ----LMKFAVDKTGCQFLEKAVKGS-------LTSYQKFQLFEQVIGR-KDDFLKLSTNI 48 usage_00054.pdb 1 --DDFLKLSTNIFGNYLVQSVIGISLATNDDG-YTKRQEKLKNFIS-S---QMTDMCLDK 53 usage_00057.pdb 1 --DDFLKLSTNIFGNYLVQSVIGISLATNDDG-YTKRQEKLKNFIS-S---QMTDMCLDK 53 usage_00113.pdb 1 ----LMKFAVDKTGCQFLEKAVKGS-------LTSYQKFQLFEQVIGR-KDDFLKLSTNI 48 usage_00116.pdb 1 --DDFLKLSTNIFGNYLVQSVIGISLATNDDG-YTKRQEKLKNFIS-S---QMTDMCLDK 53 usage_00118.pdb 1 --DDFLKLSTNIFGNYLVQSVIGISLATNDDG-YTKRQEKLKNFIS-S---QMTDMCLDK 53 k G s L usage_00013.pdb 54 FACRVIQSSLQNMD-------LSLACKLVQA----- 77 usage_00015.pdb 50 FACRVVQLALQKFD-------HSNVFQLIQELS--- 75 usage_00017.pdb 55 FACRVIQSSLQNMD-------LSLACKLVQ------ 77 usage_00042.pdb 54 FACRVIQSSLQNMD-------LSLACKLVQAL---- 78 usage_00045.pdb 54 FACRVIQSSLQNMD-------LSLACKLVQAL---- 78 usage_00048.pdb 54 FACRVIQSSLQNMD-------LSLACKLVQAL---- 78 usage_00051.pdb 49 FGNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQ- 83 usage_00054.pdb 54 FACRVIQSSLQNMD-------LSLACKLVQAL---- 78 usage_00057.pdb 54 FACRVIQSSLQNMD-------LSLACKLVQAL---- 78 usage_00113.pdb 49 FGNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQM 84 usage_00116.pdb 54 FACYVIQSSLQNMD-------LSLACKLVQA----- 77 usage_00118.pdb 54 FACYVIQSSLQNMD-------LSLACKLVQAL---- 78 F Qs kL #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################