################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:14:11 2021 # Report_file: c_0109_21.html ################################################################################################ #==================================== # Aligned_structures: 5 # 1: usage_00005.pdb # 2: usage_00038.pdb # 3: usage_00066.pdb # 4: usage_00067.pdb # 5: usage_00154.pdb # # Length: 233 # Identity: 41/233 ( 17.6%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 69/233 ( 29.6%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 49/233 ( 21.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00005.pdb 1 PAGDQDTFHAWSNALLGD--WQ---QVVEKEAATVSLVNYFGELIAVKRENPADDLISEL 55 usage_00038.pdb 1 ----RHSMHTWTQLILSSSHG-AEV----SERAKNEMNAYFSDLIGLRSDSAGEDVTSLL 51 usage_00066.pdb 1 ----VARFRGWADTMVSL----TGYSMEDWTAARDALESYLDGLVAAKRENPGSDLLSAL 52 usage_00067.pdb 1 ----VARFRGWADTMVSL----TGYSMEDWTAARDALESYLDGLVAAKRENPGSDLLSAL 52 usage_00154.pdb 1 -----DRFTRWSGAFLS---T-AEVTAEEMQEAAEQAYAYMGDLIDRRRKEPTDDLVSAL 51 f W s A Y L r p Dl S L usage_00005.pdb 56 IAISDGD----S-------TLTEREIIAL-SIGILSAGHETTANQISMFLVTLLHNPEEL 103 usage_00038.pdb 52 GAAVGR-----DEITLSEA-------VGLA-VLLQIG-GEAVTNNSGQMFHLLLSRPELA 97 usage_00066.pdb 53 VATAAED----N-------ELTDHDVRSL-SLILLLAGYEPASNQLGSSVLTLLRFPDRL 100 usage_00067.pdb 53 VATAAED----N-------ELTDHDVRSL-SLILLLAGYEPASNQLGSSVLTLLRFPDRL 100 usage_00154.pdb 52 VQA----RDQQD-------SLSEQELLDL-AIGLLVAGYESTTTQIADFVYLLMTRPELR 99 a L ll a E nq Ll P usage_00005.pdb 104 DKLRDNREAIPKAVDELLRFVPLTTTGGIIPRLTTAEVELSGGQVLPAGAVVLPAVATAN 163 usage_00038.pdb 98 ERLRSEPEIRPRAIDELLRWIPHRN-AVGLSRIALEDVEIK-GVRIRAGDAVYVSYLAAN 155 usage_00066.pdb 101 AELRRDPGLLPSAVEELMRYAPAGD--GALFRVTLEDVTIG-DTHIPANSAVLASTQAAN 157 usage_00067.pdb 101 AELRRDPGLLPSAVEELMRYAPAGD--GALFRVTLEDVTIG-DTHIPANSAVLASTQAAN 157 usage_00154.pdb 100 RQLLDRPELIPSAVEELTRWVPLGV-GTAFPRYAVEDVTLR-GVTIRAGEPVLASTGAAN 157 Lr p P Av EL R P R edV i A Vl s aAN usage_00005.pdb 164 RDPEVFEDGERLNVTRENNPHLAFGAGIHHCLGAQLARIELQEALGAILDRMP 216 usage_00038.pdb 156 RDPEVFPDPDRIDFER--NPHVSFGFGPHYCPGGMLARLESELLVDAVLDR-- 204 usage_00066.pdb 158 WDPRRFDDPTGLRLDRPDNQHTALGHGIHFCLGAALARVELQVAIGALLRRF- 209 usage_00067.pdb 158 WDPRRFDDPTGLRLDRPDNQHTALGHGIHFCLGAALARVELQVAIGALLRR-- 208 usage_00154.pdb 158 RDQAQFPDADRIDVDRTPNQHLGFGHGVHHCLGAPLARVELQVALEVLLQR-- 208 Dp F D R N H G G H ClGa LAR Elq a a L R #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################