################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:16:38 2021 # Report_file: c_0715_56.html ################################################################################################ #==================================== # Aligned_structures: 5 # 1: usage_00001.pdb # 2: usage_00434.pdb # 3: usage_00435.pdb # 4: usage_00487.pdb # 5: usage_00591.pdb # # Length: 89 # Identity: 4/ 89 ( 4.5%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 10/ 89 ( 11.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 33/ 89 ( 37.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 --QVISETFSSGRLNRKQKIGIYKPEKY----TDR---QAYPLIVVLNAET-----LEPV 46 usage_00434.pdb 1 --TAKKITYYSKVTETERKMNVILPVGY----DEN---KKYPVVYYLH---GLMSYEDSM 48 usage_00435.pdb 1 --TAKKITYYSKVTETERKMNVILPVGY----DEN---KKYPVVYYLH---GLMSYEDSM 48 usage_00487.pdb 1 GGWHKQYTHSAVSTHCTMRFAVFLPPGA----SES---NKVPVLYWLS---GLTCTDENF 50 usage_00591.pdb 1 GGRLIKLSHNSNSTKTSMNVNIYLPKHYYAQDF--PRNKRIPTVFYLS---GLTCTPDNA 55 t s t lP y P L usage_00001.pdb 47 VS----VRYYEQ----FGE-PKCIVVGV- 65 usage_00434.pdb 49 LEDD-STLAIPTNLLKEGRAKEMIIVL-- 74 usage_00435.pdb 49 LEDD-STLAIPTNLLKEGRAKEMIIVL-- 74 usage_00487.pdb 51 MQK-AGAFKKAA-------ELGIAIVAPD 71 usage_00591.pdb 56 SEK-AFWQFQAD-------KYGFAIVFPD 76 iV #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################