################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:32:15 2021 # Report_file: c_1413_18.html ################################################################################################ #==================================== # Aligned_structures: 6 # 1: usage_00965.pdb # 2: usage_00976.pdb # 3: usage_00977.pdb # 4: usage_00978.pdb # 5: usage_00979.pdb # 6: usage_01209.pdb # # Length: 68 # Identity: 43/ 68 ( 63.2%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 43/ 68 ( 63.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 24/ 68 ( 35.3%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00965.pdb 1 PTNLVQSFFVFVNELFF------------------NLPQPWSNWLYAVWQEPVERWNFVL 42 usage_00976.pdb 1 -TNLVQSFFVFVNELFF------------------NLPQPWSNWLYAVWQEPVERWNFVL 41 usage_00977.pdb 1 -TNLVQSFFVFVNELF-------------------NLPQPWSNWLYAVWQEPVERWNFVL 40 usage_00978.pdb 1 -TNLVQSFFVFVNELFF------------------NLPQPWSNWLYAVWQEPVERWNFVL 41 usage_00979.pdb 1 PTNLVQSFFVFVNELF--------------------LPQPWSNWLYAVWQEPVERWNFAL 40 usage_01209.pdb 1 ---LVQSFFVFVNELF-AENKSWNGFWRSAPVHPFNLPQPWSNWLYAVWQEPVERWNFAL 56 LVQSFFVFVNELF LPQPWSNWLYAVWQEPVERWNF L usage_00965.pdb 43 LLALFEK- 49 usage_00976.pdb 42 LLALFEK- 48 usage_00977.pdb 41 LLALFEK- 47 usage_00978.pdb 42 LLALFEK- 48 usage_00979.pdb 41 LLALFEKK 48 usage_01209.pdb 57 LLALFEK- 63 LLALFEK #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################