################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:18:59 2021 # Report_file: c_0004_21.html ################################################################################################ #==================================== # Aligned_structures: 10 # 1: usage_00083.pdb # 2: usage_00084.pdb # 3: usage_00126.pdb # 4: usage_00127.pdb # 5: usage_00142.pdb # 6: usage_00196.pdb # 7: usage_00210.pdb # 8: usage_00211.pdb # 9: usage_00212.pdb # 10: usage_00213.pdb # # Length: 312 # Identity: 6/312 ( 1.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 15/312 ( 4.8%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 98/312 ( 31.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00083.pdb 1 -IAELRH---P-FALS-TNQVTCLAWS-H-DGNSIVTGVENGELRLWNK----T-----G 43 usage_00084.pdb 1 -YRVISG---H----L--GWVRCIAVE-P-GNQWFVTGSADRTIKIWDLA---S-----G 40 usage_00126.pdb 1 -VASHVG--LHS---ASIPGILALDLC-PSDTNKILTGGADKNVVVFDKS---S-----E 45 usage_00127.pdb 1 TQLVLRHCV-P----S-NKDVTSLDWN-S-EGTLLATGSYDGFARIWTK----D-----G 43 usage_00142.pdb 1 --KSLKL---Y----K--EKIWSFDFS---Q-GILATGSTDRKIKLVSVKYDDF------ 39 usage_00196.pdb 1 --QKLDS---H----V--GKIGAIDWHPD-SNNQMISCAEDGLIKNFQY----SNEEGGL 44 usage_00210.pdb 1 -LQTLTG---H----S--SSVWGVAFS-P-DGQTIASASDDKTVKLWNR----N-----G 39 usage_00211.pdb 1 -LQTLTG---H----S--SSVWGVAFS-P-DGQTIASASDDKTVKLWNR----N-----G 39 usage_00212.pdb 1 -LQTLTG---H----S--SSVWGVAFS-P-DGQTIASASDDKTVKLWNR----N-----G 39 usage_00213.pdb 1 -LQTLTG---H----S--SSVWGVAFS-P-DGQTIASASDDKTVKLWNR----N-----G 39 d usage_00083.pdb 44 ALLNVLNFHR-----APIVSVKWNKDGTHIISMDVENVTILWNVIS-GTVMQHFELK--G 95 usage_00084.pdb 41 KLKLSLTGHI-----STVRGVIVSTRSPYLFSCGEDKQVKCWDLEY-NKVIRHYHGHLS- 93 usage_00126.pdb 46 QILATLKGHT-----KKVTSVVFHPSQDLVFSASPDATIRIWSVPN-ASCVQVVRAHES- 98 usage_00127.pdb 44 NLASTLGQHK-----GPIFALKWNKKGNFILSAGVDKTTIIWDAHT-GEAKQQFPFHSA- 96 usage_00142.pdb 40 TLIDVLD---ETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKF-EMDLLAIIE----- 90 usage_00196.pdb 45 RLLGDLVGHE-----RRISDVKYHPSGKFIGSASHDMTWRLWDAST-HQELLLQEGHDK- 97 usage_00210.pdb 40 QLLQTLTGHS-----SSVRGVAFSPDGQTIASASDDKTVKLWNR-N-GQLLQTLTGHSS- 91 usage_00211.pdb 40 QLLQTLTGHS-----SSVRGVAFSPDGQTIASASDDKTVKLWNR-N-GQLLQTLTGHSS- 91 usage_00212.pdb 40 QLLQTLTGHS-----SSVRGVAFSPDGQTIASASDDKTVKLWNR-N-GQLLQTLTGHSS- 91 usage_00213.pdb 40 QLLQTLTGHS-----SSVRGVAFSPDGQTIASASDDKTVKLWNR-N-GQLLQTLTGHSS- 91 l L v s d W usage_00083.pdb 96 SLGVDVEWVD-DDKFVIPGPKGAIFVYQIT----EKTPTGKLIG--HHGPISVLEFND-T 147 usage_00084.pdb 94 -AVYGLDLHPTIDVLVTCSRDSTARIWDVR----TKASVHTLSG--HTNAVATVRCQAAE 146 usage_00126.pdb 99 -AVTGLSLHATGDYLLSSSDDQYWAFSDIQ----TGRVLTKVTDETSGCSLTCAQFHP-D 152 usage_00127.pdb 97 -PALDVDWQ-SNNTFASCSTDMCIHVCKLG----QDRPIKTFQG--HTNEVNAIKWDP-T 147 usage_00142.pdb 91 -EVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE--HSQDVKHVIWHP-S 146 usage_00196.pdb 98 -GVFSLSFQCDGSLVCSGGMDSLSMLWDIR----SGSKVMTLAG--HSKPIYTVAWSP-N 149 usage_00210.pdb 92 -SVWGVAFSPDGQTIASASDDKTVKLWNRN-----GQLLQTLTG--HSSSVWGVAFSP-D 142 usage_00211.pdb 92 -SVWGVAFSPDDQTIASASDDKTVKLWNRN-----GQLLQTLTG--HSSSVRGVAFSP-D 142 usage_00212.pdb 92 -SVWGVAFSPDGQTIASASDDKTVKLWNRN-----GQLLQTLTG--HSSSVWGVAFSP-D 142 usage_00213.pdb 92 -SVWGVAFSPDDQTIASASDDKTVKLWNRN-----GQLLQTLTG--HSSSVRGVAFSP-D 142 d h usage_00083.pdb 148 NKLLLSASDDGTLRIWHG--GNG-N-SQNCFYGHSQSIVSASWVG------------D-- 189 usage_00084.pdb 147 P-QIITGSHDTTIRLWDL--VAG-K-TRVTLTNHKKSVRAVVLHP-R----------H-- 188 usage_00126.pdb 153 GLIFGTGTMDSQIKIWDL--KER-T-NVANFPGHSGPITSIAFSE-N----------G-- 195 usage_00127.pdb 148 GNLLASCSDDMTLKIWSM--KQD-N-CVHDLQAHNKEIYTIKWSPTGPGTNNPNAN---- 199 usage_00142.pdb 147 EALLASSSYDDTVRIWKDYDDDW-E-CVAVLNGHEGTVWSSDFDK-------------TE 191 usage_00196.pdb 150 GYQVATGGGDGIINVWDI--RKRDEGQLNQILAHRNIVTQVRFSKED---------GG-- 196 usage_00210.pdb 143 GQTIASASDDKTVKLWNR---NG-Q-LLQTLTGHSSSVRGVAFSP-D----------G-- 184 usage_00211.pdb 143 GQTIASASDDKTVKLWNR---NG-Q-LLQTLTGHSSSVRGVAFSP-D----------G-- 184 usage_00212.pdb 143 GQTIASASDDKTVKLWNR---NG-Q-LLQTLTGHSSSVRGVAFSP-D----------G-- 184 usage_00213.pdb 143 GQTIASASDDKTVKLWNR---NG-Q-LLQTLTGHSSSVRGVAFSP-D----------G-- 184 D W H usage_00083.pdb 190 --DKVISCSMDGSVRLWSLK--------QNTLLALSIV-DG-VPIFAGRISQDGQKYAVA 237 usage_00084.pdb 189 --YTFASGSPDNIKQWKFP---------DGSFIQNLSG-HN-AIINTLTVNSDGV-LVSG 234 usage_00126.pdb 196 --YYLATAADDSSVKLWDLR--------KLKNFKTLQL-DNNFEVKSLIFDQSGTYLALG 244 usage_00127.pdb 200 --LMLASASFDSTVRLWDVD--------RGICIHTMTK-HQ-EPVYSVAFSPDGRYLASG 247 usage_00142.pdb 192 GVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK-RQVYNVAWGFNGL-IASV 249 usage_00196.pdb 197 --KKLVSCGYDNLINVYSSD--------TWLKMGSLAG-HT-DKIISLDISNNSHFLVSG 244 usage_00210.pdb 185 --QTIASASDDKTVKLWNR---------NGQLLQTLTG-HS-SSVNGVAFRPDGQTIASA 231 usage_00211.pdb 185 --QTIASASDDKTVKLWNR---------NGQLLQTLTG-HS-SSVWGVAFSPDGQTIASA 231 usage_00212.pdb 185 --QTIASASDDKTVKLWNR---------NGQLLQTLTG-HS-SSVNGVAFRPDGQTIASA 231 usage_00213.pdb 185 --QTIASASDDKTVKLWNR---------NGQLLQTLTG-HS-SSVWGVAFSPDGQTIASA 231 s D g usage_00083.pdb 238 FMDGQVNVYDLK 249 usage_00084.pdb 235 ADNGTMHLWD-- 244 usage_00126.pdb 245 GTDV-QIYI--- 252 usage_00127.pdb 248 SFDKCVHIWN-- 257 usage_00142.pdb 250 G----------- 250 usage_00196.pdb 245 GWDRSIKLWN-- 254 usage_00210.pdb 232 SDDKTVKLWN-- 241 usage_00211.pdb 232 SSDKTVKLWN-- 241 usage_00212.pdb 232 SDDKTVKLWN-- 241 usage_00213.pdb 232 SSDKTVKLWN-- 241 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################