################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:26:02 2021 # Report_file: c_0785_71.html ################################################################################################ #==================================== # Aligned_structures: 15 # 1: usage_00108.pdb # 2: usage_00178.pdb # 3: usage_00271.pdb # 4: usage_00272.pdb # 5: usage_00318.pdb # 6: usage_00319.pdb # 7: usage_00320.pdb # 8: usage_00321.pdb # 9: usage_00322.pdb # 10: usage_00323.pdb # 11: usage_00325.pdb # 12: usage_00735.pdb # 13: usage_00736.pdb # 14: usage_00737.pdb # 15: usage_00738.pdb # # Length: 99 # Identity: 10/ 99 ( 10.1%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 29/ 99 ( 29.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 41/ 99 ( 41.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00108.pdb 1 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD--E-------------RGIDV 45 usage_00178.pdb 1 SFLFAGPTGVGKTEVTVQLSKALG-I----ELLRFDMSEYMERHTVSRLIGAPP-GYVGF 54 usage_00271.pdb 1 SFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYME-----------K-HAVSR 46 usage_00272.pdb 1 SFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYME-----------K-HAVSR 46 usage_00318.pdb 1 SFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKHSTSRLVGSP-PGYVGY 57 usage_00319.pdb 1 SFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKHSTSRLVGS-PPGYVGY 57 usage_00320.pdb 1 SFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKHSTSRLVGSPP-GYVGY 57 usage_00321.pdb 1 SFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKHSTSRLVGSPP-GYVGY 57 usage_00322.pdb 1 SFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKHSTSRLVGSPP-GYVGY 57 usage_00323.pdb 1 SFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKHSTSRLVGSPP-GYVGY 57 usage_00325.pdb 1 SFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKHSTSRLVGSPP-GYVGY 57 usage_00735.pdb 1 SFLFLGPTGVGKTELAKTLAATLFDT--EEAI-RIDTEY--E-----------K-HAVSR 43 usage_00736.pdb 1 SFLFLGPTGVGKTELAKTLAATLFDT--EEAI-RIDTEY--E-----------K-HAVSR 43 usage_00737.pdb 1 SFLFLGPTGVGKTELAKTLAATLFDT--EEAI-RIDTEY--E-----------K-HAVSR 43 usage_00738.pdb 1 SFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYME-----------K-HAVSR 46 sf F GPtGvGKTe a La f r d E v usage_00108.pdb 46 VR------------HKIKEFARTAPIGGAP-FKIIFLD- 70 usage_00178.pdb 55 DQG-----------GLLTDAVIKH------PHAVLLLDE 76 usage_00271.pdb 47 LIGAPPG-------GQLTEAVRRR------PYSVILFDE 72 usage_00272.pdb 47 LIGAPPG------GGQLTEAVRRR------PYSVILFD- 72 usage_00318.pdb 58 DEG-----------GQLTEKVRRK------PYSVVLLD- 78 usage_00319.pdb 58 DEG-----------GQLTEKVRRK------PYSVVLLDA 79 usage_00320.pdb 58 DEG-----------GQLTEKVRRK------PYSVVLLD- 78 usage_00321.pdb 58 DEG-----------GQLTEKVRRK------PYSVVLLD- 78 usage_00322.pdb 58 DEG-----------GQLTEKVRRK------PYSVVLLDE 79 usage_00323.pdb 58 DEG-----------GQLTEKVRRK------PYSVVLLDE 79 usage_00325.pdb 58 DEG-----------GQLTEKVRRK------PYSVVLLD- 78 usage_00735.pdb 44 LIGAPPGYVGYEEGGQLTEAVRRR------PYSVILFD- 75 usage_00736.pdb 44 LIGAPPGYVGYEEGGQLTEAVRRR------PYSVILFD- 75 usage_00737.pdb 44 LIGAPPGYVGYEEGGQLTEAVRRR------PYSVILFDA 76 usage_00738.pdb 47 LIGAPPGYVGYEEGGQLTEAVRRR------PYSVILFD- 78 g lte vr v l D #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################