################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:56:59 2021 # Report_file: c_0220_2.html ################################################################################################ #==================================== # Aligned_structures: 13 # 1: usage_00002.pdb # 2: usage_00040.pdb # 3: usage_00041.pdb # 4: usage_00052.pdb # 5: usage_00053.pdb # 6: usage_00054.pdb # 7: usage_00064.pdb # 8: usage_00068.pdb # 9: usage_00079.pdb # 10: usage_00080.pdb # 11: usage_00092.pdb # 12: usage_00107.pdb # 13: usage_00127.pdb # # Length: 104 # Identity: 60/104 ( 57.7%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 77/104 ( 74.0%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 2/104 ( 1.9%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00002.pdb 1 -LYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECGLEVGEFIHTFGDAH 59 usage_00040.pdb 1 -MFQFYVNEGKLSCQLYQRSADVFLGVPFNIASYALLTHLIAHETGLEVGEFVHTLGDAH 59 usage_00041.pdb 1 -MFQFYVNEGKLSCQLYQRSADVFLGVPFNIASYALLTHLIAHETGLEVGEFVHTLGDAH 59 usage_00052.pdb 1 TLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECGLEVGEFIHTFGDAH 60 usage_00053.pdb 1 -LYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECGLEVGEFIHTFGDAH 59 usage_00054.pdb 1 -LYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECGLEVGEFIHTFGDAH 59 usage_00064.pdb 1 TLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECGLEVGEFIHTFGDAH 60 usage_00068.pdb 1 TMFQFYVNEGKLSCQLYQRSADVFLGVPFNIASYALLTHLIAHETGLEVGEFVHTLGDAH 60 usage_00079.pdb 1 -LYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECGLEVGEFIHTFGDAH 59 usage_00080.pdb 1 TLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECGLEVGEFIHTFGDAH 60 usage_00092.pdb 1 -MFQFYVQDGKLSCQLYQRSADIFLGVPFNIASYALLTHLIAKECGLEVGEFVHTFGDAH 59 usage_00107.pdb 1 -MFQFYVNEGKLSCQLYQRSADVFLGVPFNIASYALLTHLIAHETGLEVGEFVHTLGDAH 59 usage_00127.pdb 1 TLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECGLEVGEFIHTFGDAH 60 QFYVn GKLS QLYQRSAD FLGVPFNIASYALLTHL AhE GLEVGEF HT GDAH usage_00002.pdb 60 LYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLN 103 usage_00040.pdb 60 LYQNHVEQMQEQLSREVRSFPTLVLNPDKASVFDFDMEDIKVEG 103 usage_00041.pdb 60 LYQNHVEQMQEQLSREVRSFPTLVLNPDKASVFDFDMEDIKVEG 103 usage_00052.pdb 61 LYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLN 104 usage_00053.pdb 60 LYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLN 103 usage_00054.pdb 60 LYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLN 103 usage_00064.pdb 61 LYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLN 104 usage_00068.pdb 61 LYQNHVEQMQEQLSREVRSFPTLVLNPDKASVFDFDMEDIKVEG 104 usage_00079.pdb 60 LYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLN 103 usage_00080.pdb 61 LYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLN 104 usage_00092.pdb 60 IYSNHIDAIQTQLARESFNPPTLKINSDKSIFDINYEDLEIVD- 102 usage_00107.pdb 60 LYQNHVEQMQEQLSREVRSFPTLVLNPDKASVFDFDMEDIKVEG 103 usage_00127.pdb 61 LYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLN 104 lY NH q eQLsR r PTL lNpDK fdfdm dik #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################