################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:11:19 2021 # Report_file: c_1442_65.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00895.pdb # 2: usage_05196.pdb # 3: usage_07209.pdb # 4: usage_07216.pdb # 5: usage_07218.pdb # 6: usage_07219.pdb # 7: usage_07223.pdb # 8: usage_14576.pdb # 9: usage_14578.pdb # 10: usage_15844.pdb # 11: usage_16974.pdb # # Length: 39 # Identity: 3/ 39 ( 7.7%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 4/ 39 ( 10.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 30/ 39 ( 76.9%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00895.pdb 1 -LVTIGNDAWA-----T-------GSSLMFLKPGMQ-VP 25 usage_05196.pdb 1 DLVTVSEHAWR-----T----G---GSRMFIKVGSQ-VS 26 usage_07209.pdb 1 DMVTVGKDAWATGNPAL---RG---SSVMFLKPGDQ-VS 32 usage_07216.pdb 1 DMVTVGKDAWATGNPAL---RG---SSVMFLKPGDQ-VS 32 usage_07218.pdb 1 -MVTVGKDAW-----------------VMFLKPGDQ-VS 20 usage_07219.pdb 1 DMVTVGKDAP-----------------------GDQ-VS 15 usage_07223.pdb 1 DMVTVGKDAWATGNPAL---RG---SSVMFLKPGDQ-VS 32 usage_14576.pdb 1 -IVTVGRDAWAKDNPVF---VG---SSLMFLKEGDR-VS 31 usage_14578.pdb 1 -IVTVGRDAWAKDNPVF---VG---SSLMFLKEGDR-VS 31 usage_15844.pdb 1 DLVTIGNDAWA-----TGNKGASL-----FLKPGQVP-- 27 usage_16974.pdb 1 -LVTIGN---------------------MFLKPGMQ-VP 16 VT g G #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################