################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:26:08 2021 # Report_file: c_1071_22.html ################################################################################################ #==================================== # Aligned_structures: 10 # 1: usage_00055.pdb # 2: usage_00056.pdb # 3: usage_00068.pdb # 4: usage_00069.pdb # 5: usage_00084.pdb # 6: usage_00094.pdb # 7: usage_00134.pdb # 8: usage_00166.pdb # 9: usage_00176.pdb # 10: usage_00177.pdb # # Length: 80 # Identity: 5/ 80 ( 6.2%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 11/ 80 ( 13.8%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 30/ 80 ( 37.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00055.pdb 1 HPLYEYMKKTKPGI--LA-----------------TKAIKWNFTSFLIDRDGVPVERFSP 41 usage_00056.pdb 1 -DLYKFLKSRQHG---TL-----------------TNNIKWNFSKFLVDRQGQPVKRYSP 39 usage_00068.pdb 1 HPLFAFLREVLPTP-SDDATALMTDPKFITWSPVCRNDVSWNFEKFLVGPDGVPVRRYSR 59 usage_00069.pdb 1 HPLYEYMKKTKPGIL--K-----------------TKAIKWNFTSFLIDRDGVPVERFSP 41 usage_00084.pdb 1 -DLYKFLKSRQHG---TL-----------------TNNIKWNFSKFLVDRQGQPVKRYSP 39 usage_00094.pdb 1 -KVFSFLKHSCPHP--SE--IL-GTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSH 54 usage_00134.pdb 1 -PAFRFLVDSSK------------------------KEPRWNFWKYLVNPEGQVVKFWRP 35 usage_00166.pdb 1 DPVYKFLKSQKSGM--LG-----------------LRGIKWNFEKFLVDKKGKVYERYSS 41 usage_00176.pdb 1 HPLYEYMKKTKPGI--LA-----------------TKAIKWNFTSFLIDRDGVPVERFSP 41 usage_00177.pdb 1 HPLYEYMKKTKPGI--LA-----------------TKAIKWNFTSFLIDRDGVPVERFSP 41 WNF fL G v r s usage_00055.pdb 42 GASVKDIEEKLIPLLGS--- 58 usage_00056.pdb 40 TTAPYDIEGDIMELLEK--- 56 usage_00068.pdb 60 RFLTIDIEPDIETLLS---- 75 usage_00069.pdb 42 GASVKDIEKKLIPLLES--- 58 usage_00084.pdb 40 TTAPYDIEGDIMELLEK--- 56 usage_00094.pdb 55 RATVSSVKTDILAYLK---- 70 usage_00134.pdb 36 EEPIEVIRPDIAALVRQVII 55 usage_00166.pdb 42 LTKPSSLSETIEELLKE--- 58 usage_00176.pdb 42 GASVKDIEEKLIPLL----- 56 usage_00177.pdb 42 GASVKDIEEKLIPLL----- 56 ll #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################