################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:21:43 2021 # Report_file: c_0383_1.html ################################################################################################ #==================================== # Aligned_structures: 15 # 1: usage_00004.pdb # 2: usage_00005.pdb # 3: usage_00006.pdb # 4: usage_00007.pdb # 5: usage_00008.pdb # 6: usage_00009.pdb # 7: usage_00010.pdb # 8: usage_00018.pdb # 9: usage_00019.pdb # 10: usage_00020.pdb # 11: usage_00040.pdb # 12: usage_00041.pdb # 13: usage_00042.pdb # 14: usage_00043.pdb # 15: usage_00044.pdb # # Length: 100 # Identity: 37/100 ( 37.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 40/100 ( 40.0%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 20/100 ( 20.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00004.pdb 1 NEINVIIEIPMNSGPIKYEFDKESGALFVDRFMQTT--MSYPCNYGFIPDTLSNDGDPVD 58 usage_00005.pdb 1 NEINVIIEIPMNSGPIKYEFDKESGALFVDRFMQTT--MSYPCNYGFIPDTLSNDGDPVD 58 usage_00006.pdb 1 -EINVIIEIPMNSGPIKYEFDKESGALFVDRFMQTT--MSYPCNYGFIPDTLSNDGDPVD 57 usage_00007.pdb 1 NEINVIIEIPMNSGPIKYEFDKESGALFVDRFMQTT--MSYPCNYGFIPDTLSNDGDPVD 58 usage_00008.pdb 1 NEINVIIEIPMNSGPIKYEFDKESGALFVDRFMQTT--MSYPCNYGFIPDTLSNDGDPVD 58 usage_00009.pdb 1 NEINVIIEIPMNSGPIKYEFDKESGALFVDRFMQTT--MSYPCNYGFIPDTLSNDGDPVD 58 usage_00010.pdb 1 -EINVIIEIPMNSGPIKYEFDKESGALFVDRFMQTT--MSYPCNYGFIPDTLSNDGDPVD 57 usage_00018.pdb 1 --FNVIIEIPANGGEVKYEYDKELGFLTVDRF----PTSRYPCNYGFVPSTLAQDGDPLD 54 usage_00019.pdb 1 --FNVIIEIPANGGEVKYEYDKELGFLTVDRF----PTSRYPCNYGFVPSTLAQDGDPLD 54 usage_00020.pdb 1 --FNVIIEIPANGGEVKYEYDKELGFLTVDRF----PTSRYPCNYGFVPSTLAQDGDPLD 54 usage_00040.pdb 1 --VNVVIEVSQDSHPVKYEFDEKNGALWVDRFLPTA--MYYPCNYGFIPNTIAGDGDPVD 56 usage_00041.pdb 1 --VNVVIEVSQDSHPVKYEFDEKNGALWVDRFLPTA--MYYPCNYGFIPNTIAGDGDPVD 56 usage_00042.pdb 1 --INVIIEISQNSCPVKYEFDKEKNLFCVDRFLPTS--MYYPCNYGFIPHTCAGDGDPVD 56 usage_00043.pdb 1 NEINVIIEIPMNSGPIKYEFDKESGALFVDRFMQTT--MSYPCNYGFIPDTLSNDGDPVD 58 usage_00044.pdb 1 NEINVIIEIPMNSGPIKYEFDKESGALFVDRFMQTT--MSYPCNYGFIPDTLSNDGDPVD 58 NV IE KYE D g l VDRF YPCNYGF P T DGDP D usage_00004.pdb 59 VLVVAHHPVVPGSVIKCRAIGVLM-MEDESGLDEKIIAVP 97 usage_00005.pdb 59 VLVVAHHPVVPGSVIKCRAIGVLM-MEDESGLDEKIIAVP 97 usage_00006.pdb 58 VLVVAHHPVVPGSVIKCRAIGVLM-MEDESGLDEKIIAVP 96 usage_00007.pdb 59 VLVVAHHPVVPGSVIKCRAIGVLM-MEDESGLDEKIIAVP 97 usage_00008.pdb 59 VLVVAHHPVVPGSVIKCRAIGVLM-MEDESGLDEKIIAVP 97 usage_00009.pdb 59 VLVVAHHPVVPGSVIKCRAIGVLM-MEDESGLDEKIIAVP 97 usage_00010.pdb 58 VLVVAHHPVVPGSVIKCRAIGVLM-MEDESGLDEKIIAVP 96 usage_00018.pdb 55 VLVLTPVPVQPGVLR-VRALG---IKEDEAGEDSKVLAVP 90 usage_00019.pdb 55 VLVLTPVPVQPGVLR-VRALG---IKEDEAGEDSKV---- 86 usage_00020.pdb 55 VLVLTPVPVQPGVLR-VRALG---IKEDEAGEDSKV---- 86 usage_00040.pdb 57 VLVLARFPVMPGAVICVRPVGVLM-MNDEKGEDAKVLAV- 94 usage_00041.pdb 57 VLVLARFPVMPGAVICVRPVGVLM-MNDEKGEDAKVLAV- 94 usage_00042.pdb 57 VLVASRFPVMSGAVIRARPVGVLV-MHDED---VKILA-- 90 usage_00043.pdb 59 VLVVAHHPVVPGSVIKCRAIGVLM-MEDESGLDEKIIAVP 97 usage_00044.pdb 59 VLVVAHHPVVPGSVIKCRAIGVLM-MEDESGLDEKIIAVP 97 VLV PV pG R G DE K #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################