################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:36:55 2021 # Report_file: c_0608_1.html ################################################################################################ #==================================== # Aligned_structures: 7 # 1: usage_00099.pdb # 2: usage_00235.pdb # 3: usage_00252.pdb # 4: usage_00260.pdb # 5: usage_00317.pdb # 6: usage_00558.pdb # 7: usage_00591.pdb # # Length: 179 # Identity: 14/179 ( 7.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 19/179 ( 10.6%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 64/179 ( 35.8%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00099.pdb 1 TIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQ---PSFA-------ENGRLYDNGTL 50 usage_00235.pdb 1 TEQEFKEMCAAAEEYGIKVIVDAVINHTTFDY-AA---IS--------------NE-V-- 39 usage_00252.pdb 1 TMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDD---PSFA-------ENGRLYDNGNL 50 usage_00260.pdb 1 -RAQFIDMVNRCSAAGVDIYVDTLINHMAAGS--G----TGTAGNSF--GNKSFPI-Y-- 48 usage_00317.pdb 1 -ENEFRDMVTRCNNVGVRIYVDAVINHMCGSG--AAAGTGTTCGSYCNPGSREFPA-V-- 54 usage_00558.pdb 1 SFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETD---PTYA-------ENGRLYDNGTL 50 usage_00591.pdb 1 TMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDD---PSFA-------ENGRLYDNGNL 50 F D NH usage_00099.pdb 51 LGGYTNDTQNLFHH-N--GGTD--F--STTENGIYKNLGDLADLNHNNSTVDVYLKDAIK 103 usage_00235.pdb 40 K----S-IPNWTHGNT--QIKN--W--SDRWDVTQNSLLGLYDWNTQNTQVQSYLKRFLE 88 usage_00252.pdb 51 LGGYTNDTQNLFHH-Y--GGTD--F--STIENGIYKNLYDLADLNHNNSSVDVYLKDAIK 103 usage_00260.pdb 49 --SP-----QDFHE-S--CTINNSDYGNDRYRVQNCELVGLADLDTASNYVQNTIAAYIN 98 usage_00317.pdb 55 PYSAWDFNDGKCKT-ASGGIES--Y--NDPYQVRDCQLVGLLDLALEKDYVRSMIADYLN 109 usage_00558.pdb 51 LGGYTNDTNGYFHH-Y--GGTD--F--SSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIK 103 usage_00591.pdb 51 LGGYTNDTQNLFHH-Y--GGTD--F--STIENGIYKNLYDLADLNHNNSSVDVYLKDAIK 103 h L L Dl v usage_00099.pdb 104 MWLDLGIDGIRMDAVKHMPFG-------WQKSFMAAVNN--------YKPVFT-F-G-- 143 usage_00235.pdb 89 RALNDGADGFRFDAAKHIELPDDGSYGSQFWPNITNT-----------SAEFQYG---- 132 usage_00252.pdb 104 MWLDLGVDGIRVDAVKHMPFG-------WQKSFMATINN--------YKPVFT-F-GE- 144 usage_00260.pdb 99 DLQAIGVKGFRFDASKHVAAS-------DIQSLMAKVNG----------SPVV-FQ--- 136 usage_00317.pdb 110 KLIDIGVAGFRIDASKHMWPG-------DIKAVLDKLHNLNTNWFPAGSRPFI-F-Q-E 158 usage_00558.pdb 104 VWLDMGIDGIRLDAVKHMPFG-------WQKNFMDSILS--------YRPVFT-F-GE- 144 usage_00591.pdb 104 MWLDLGVDGIRVDAVKHMPFG-------WQKSFMATINN--------YKPVFT-F-GE- 144 G G R DA KH f f #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################