################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:55:06 2021 # Report_file: c_1408_39.html ################################################################################################ #==================================== # Aligned_structures: 17 # 1: usage_00010.pdb # 2: usage_00011.pdb # 3: usage_00089.pdb # 4: usage_00092.pdb # 5: usage_00093.pdb # 6: usage_00217.pdb # 7: usage_00538.pdb # 8: usage_00539.pdb # 9: usage_00540.pdb # 10: usage_01105.pdb # 11: usage_01106.pdb # 12: usage_01161.pdb # 13: usage_01162.pdb # 14: usage_01163.pdb # 15: usage_01240.pdb # 16: usage_01290.pdb # 17: usage_01490.pdb # # Length: 80 # Identity: 18/ 80 ( 22.5%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 47/ 80 ( 58.8%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 21/ 80 ( 26.2%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00010.pdb 1 SKRQIQAAYSILSEVQQAVSQGSSDSQILDLSNRFYTLIPHDFGMKKPPLLNNADSVQAK 60 usage_00011.pdb 1 SKRQIQAAYSILSEVQQAVSQGSSDSQILDLSNRFYTLIPHDFGMKKPPLLNNADSVQAK 60 usage_00089.pdb 1 SKRQIQAAYSILSEVQQAVSQGSSDSQILDLSNRFYTLIPHDFGMKKPPLLNNADSVQAK 60 usage_00092.pdb 1 -KRQIQSAYSILNEVQQAVSDGGSESQILDLSNRFYTLIPHDFGMKKPPLLSNLEYIQAK 59 usage_00093.pdb 1 -KRQIQSAYSILNEVQQAVSDGGSESQILDLSNRFYTLIPHDFGMKKPPLLSNLEYIQAK 59 usage_00217.pdb 1 -KRQIQSAYSILNEVQQAVSDGGSESQILDLSNRFYTLIPHDFGMKKPPLLSNLEYIQAK 59 usage_00538.pdb 1 -VAQIKAGYQSLKKIEDCIRAGQHGRALMEACNEFYTRIPHDFGLRTPPLIRTQKELSEK 59 usage_00539.pdb 1 --RQIQAAYSILSEVQQAVSQGSSDSQILDLSNRFYTLIPHDFGMKKPPLLNNADSVQAK 58 usage_00540.pdb 1 SKRQIQAAYSILSEVQQAVSQGSSDSQILDLSNRFYTLIPHD-----PPLLNNADSVQAK 55 usage_01105.pdb 1 --RQIQAAYSILSEVQQAVSQGSSDSQILDLSNRFYTLIPHDFGMKKPPLLNNADSVQAK 58 usage_01106.pdb 1 --RQIQAAYSILSEVQQAVSQGSSDSQILDLSNRFYTLIPHDFGMKKPPLLNNADSVQAK 58 usage_01161.pdb 1 ---QIQAAYSILSEVQQAVSQGSSDSQILDLSNRFYTLIPHDFGMKKPPLLNNADSVQAK 57 usage_01162.pdb 1 ---QIQAAYSILSEVQQAVSQGSSDSQILDLSNRFYTLIPHDFGMKKPPLLNNADSVQAK 57 usage_01163.pdb 1 SKRQIQAAYSILSEVQQAVSQGSSDSQILDLSNRFYTLIPHDFGMKKPPLLNNADSVQAK 60 usage_01240.pdb 1 -KRQIQSAYSILNEVQQAVSDGGSESQILDLSNRFYTLIPHDFGMKKPPLLSNLEYIQAK 59 usage_01290.pdb 1 -KRQIQAAYSILSEVQQAVSQGSSDSQILDLSNRFYTLIPHD------PLLNNADSVQAK 53 usage_01490.pdb 1 --RQIQAAYSILSEVQQAVSQGSSDSQILDLSNRFYTLIPHDFGMKKPPLLNNADSVQAK 58 QIq aYsiL evqqavs G s sqildlsNrFYTlIPHD PLl n qaK usage_00010.pdb 61 AEMLDNLLDIEVAYSLL--- 77 usage_00011.pdb 61 AEMLDNLLDIEVAYSLLRG- 79 usage_00089.pdb 61 AEMLDNLLDIEVAYSLLRG- 79 usage_00092.pdb 60 VQMLDNLL------------ 67 usage_00093.pdb 60 VQMLDNLL------------ 67 usage_00217.pdb 60 VQMLDNLL------------ 67 usage_00538.pdb 60 IQLLEALGDIEIAIKLV--- 76 usage_00539.pdb 59 VEMLDNLLDIEVAYSLLR-- 76 usage_00540.pdb 56 VEMLDNLLDIEVAYSLLRG- 74 usage_01105.pdb 59 AEMLDNLLDIEVAYSLLRG- 77 usage_01106.pdb 59 AEMLDNLLDIEVAYSLLRG- 77 usage_01161.pdb 58 AEMLDNLLDIEVAYSLLRG- 76 usage_01162.pdb 58 AEMLDNLLDIEVAYSLLR-- 75 usage_01163.pdb 61 AEMLDNLLDIEVAYSLLRG- 79 usage_01240.pdb 60 VQMLDNLL------------ 67 usage_01290.pdb 54 AEMLDNLLDIEVAYSLL--- 70 usage_01490.pdb 59 VEMLDNLLDIEVAYSLLRGG 78 mLdnLl #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################