################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:50:00 2021 # Report_file: c_0209_17.html ################################################################################################ #==================================== # Aligned_structures: 17 # 1: usage_00008.pdb # 2: usage_00049.pdb # 3: usage_00050.pdb # 4: usage_00051.pdb # 5: usage_00052.pdb # 6: usage_00053.pdb # 7: usage_00054.pdb # 8: usage_00055.pdb # 9: usage_00080.pdb # 10: usage_00096.pdb # 11: usage_00107.pdb # 12: usage_00108.pdb # 13: usage_00109.pdb # 14: usage_00194.pdb # 15: usage_00224.pdb # 16: usage_00388.pdb # 17: usage_00417.pdb # # Length: 120 # Identity: 24/120 ( 20.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 75/120 ( 62.5%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 30/120 ( 25.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00008.pdb 1 -IQMTQSPSSLSASVGDRVTITCRASQSV--SS-AVAWYQQKPGKAPKLLIYSASSLYSG 56 usage_00049.pdb 1 ---MTQSPSSLSASVGDRVTITCRA-V----SS-AVAWYQQKPGKAPKLLIYSTSSLYSG 51 usage_00050.pdb 1 -IQMTQSPSSLSASVGDRVTITCRASQSV--SS-AVAWYQQKPGKAPKLLIYSASSLYSG 56 usage_00051.pdb 1 DIQMTQSPSSLSASVGDRVTITCRASQSV--SS-AVAWYQQKPGKAPKLLIYSASSLYSG 57 usage_00052.pdb 1 -IQMTQSPSSLSASVGDRVTITCRASQSV--SS-AVAWYQQKPGKAPKLLIYSASSLYSG 56 usage_00053.pdb 1 -IQMTQSPSSLSASVGDRVTITCRASQSV--SS-AVAWYQQKPGKAPKLLIYSASSLYSG 56 usage_00054.pdb 1 -IQMTQSPSSLSASVGDRVTITCRASQSV--SS-AVAWYQQKPGKAPKLLIYSASSLYSG 56 usage_00055.pdb 1 -IQMTQSPSSLSASVGDRVTITCRASQSV--SS-AVAWYQQKPGKAPKLLIYSASSLYSG 56 usage_00080.pdb 1 -IQMTQSPSSLSASVGDRVTITCRASQSV--SS-AVAWYQQKPGKAPKLLIYSASSLYSG 56 usage_00096.pdb 1 -IQMTQSPSSLSASVGDRVTITCRASQDV--NT-AVAWYQQKPGKAPKLLIYSASFLYSG 56 usage_00107.pdb 1 -IQMTQSPSTLSASVGDRVTITCRASQSI--SS-WLAWYQQRPGKAPKLLIYKASSLESG 56 usage_00108.pdb 1 -IQMTQSPSSLSASVGDRVTITCKASQDV--SI-GVAWYQQKPGKAPKLLIYSASYRYTG 56 usage_00109.pdb 1 -IQMTQSPSSLSASVGDRVTITCKASQDV--SI-GVAWYQQKPGKAPKLLIYSASYRYTG 56 usage_00194.pdb 1 ---MIQPEKLLLVTVGKTATLHCTVTSLLP--VGPVLWFRGVGP-GRELIYNQKE----G 50 usage_00224.pdb 1 ---MTQSPSSLSASVGDRVTITCRA-V----SS-AVAWYQQKPGKAPKLLIYS-SSLYSG 50 usage_00388.pdb 1 ---MTQSPSSLSASVGDRVTITCRA-S---SS--AVAWYQQKPGKAPKLLIYSTSSLYSG 51 usage_00417.pdb 1 DIQMTQSPSSLSASVGDRVTITCRASQSV--SS-AVAWYQQKPGKAPKLLIYSASSLYSG 57 MtQsps LsasVGdrvTitC a vaWyqq pg apkLliy s G usage_00008.pdb 57 VPSRFSGSG------SGTDFTLTISSLQPEDFATYYCQQYSYSL--LTFGQGTKVEI--- 105 usage_00049.pdb 52 VPSRFSGSR------S-TDFTLTISSLQPEDFATYYCQQSSPSFL-ITFGQGTKVEI--- 100 usage_00050.pdb 57 VPSRFSGSR------SGTDFTLTISSLQPEDFATYYCQQYPYYSSLITFGQGTKVEI--- 107 usage_00051.pdb 58 VPSRFSGSR------SGTDFTLTISSLQPEDFATYYCQQYPYYSSLITFGQGTKVEI--- 108 usage_00052.pdb 57 VPSRFSGSR------SGTDFTLTISSLQPEDFATYYCQQYPYYSSLITFGQGTKVEI--- 107 usage_00053.pdb 57 VPSRFSGSR------SGTDFTLTISSLQPEDFATYYCQQYPYYSSLITFGQGTKVEI--- 107 usage_00054.pdb 57 VPSRFSGSR------SGTDFTLTISSLQPEDFATYYCQQYPYYSSLITFGQGTKVEI--- 107 usage_00055.pdb 57 VPSRFSGSR------SGTDFTLTISSLQPEDFATYYCQQYPYYSSLITFGQGTKVEI--- 107 usage_00080.pdb 57 VPSRFSGSR------SGTDFTLTISSLQPEDFATYYCQQYKYVP--VTFGQGTKVEI--- 105 usage_00096.pdb 57 VPSRFSGSR------SGTDFTLTISSLQPEDFATYYCQQHYTTP--PTFGQGTKVEI--- 105 usage_00107.pdb 57 VPSRFSGSG------SGTEFTLTISSLQPDDFATYYCQHYNSYSPGYTFGQGTKVEI--- 107 usage_00108.pdb 57 VPSRFSGSG------SGTDFTLTISSLQPEDFATYYCQQYYIYP--YTFGQGTKVEI--- 105 usage_00109.pdb 57 VPSRFSGSG------SGTDFTLTISSLQPEDFATYYCQQYYIYP--YTFGQGTKVEI--- 105 usage_00194.pdb 51 HFPRVTTVSDLTKRN-NMDFSIRISSITPADVGTYYCVKFRKNVE-FKSGPGTEMAL--- 105 usage_00224.pdb 51 VPSRFSGSR------SGTDFTLTISSLQPEDFATYYCQQSSPSFL-ITFGQGTKVEI--- 100 usage_00388.pdb 52 VPSRFSGSR------SGTDFTLTISSLQPEDFATYYCQQSSPSFL-ITFGQGTKVEIKRT 104 usage_00417.pdb 58 VPSRFSGSR------SGTDFTLTISSLQPEDFATYYCQQSSSSL--ITFGQGTKVEI--- 106 vpsRfsgs tdFtltISSlqP DfaTYYCq tfGqGTkvei #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################