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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Wed Jan 20 23:00:28 2021
# Report_file: c_0008_3.html
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#====================================
# Aligned_structures: 4
#   1: usage_00044.pdb
#   2: usage_00047.pdb
#   3: usage_00056.pdb
#   4: usage_00057.pdb
#
# Length:        306
# Identity:      222/306 ( 72.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    245/306 ( 80.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           45/306 ( 14.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00044.pdb         1  ---GVIPALTPCRQDRTPDFDALVRKGKELIADG-SAVVYCGS-GDWPLLTDEQR-EGVE   54
usage_00047.pdb         1  GVIPAL--MTPCKPDRSPDFDALVRKGQELIGDGMSAVVYCGSMGDWPLLTDAQRMEGVE   58
usage_00056.pdb         1  GVIPAL--MTPGREDRTPDFDALVRKGKALIADGMSAVVYCGSMGDWPLLTDAQRMEGVE   58
usage_00057.pdb         1  GVIPAL--MTPGREDRTPDFDALVRKGKALIADGMSAVVYCGSMGDWPLLTDAQRMEGVE   58
                              pal  mTP r DRtPDFDALVRKGk LIaDG SAVVYCGS GDWPLLTDaQR EGVE

usage_00044.pdb        55  RLVKAGIPVIVGTGAVNTASAVAHAVHAQKVGAKGL-VIPRVLSRGSVIAAQKAHFKAIL  113
usage_00047.pdb        59  RLVKAGIPVIVGTGAVNTASAVAHAAHAQKVGAKGLMVIPRVLSRGSAIAAQKAYFKAIL  118
usage_00056.pdb        59  RLVKAGVPVIVGTGAVNTALAAAHAAHAQKVGAQGLMVIPRVLSRGPSIVAQKAHFKAIL  118
usage_00057.pdb        59  RLVKAGVPVIVGTGAVNTALAAAHAAHAQKVGAQGLMVIPRVLSRGPSIVAQKAHFKAIL  118
                           RLVKAG PVIVGTGAVNTA A AHAaHAQKVGA GL VIPRVLSRG  I AQKAhFKAIL

usage_00044.pdb       114  SAAPEIPAVIYNSPYYGFATRADLFFALRAEHKNLVGFKEFGGPAD-RYAAENITSRDDE  172
usage_00047.pdb       119  SAAPDLPAVIYNSPYYGFATRADLFFDLRAEHPNLVGFKEFGGPADMRYAAENITSRDDG  178
usage_00056.pdb       119  AAAPDLPSVIYNSPYYGFATRADLFFALRAEHPNLVGFKEFGGNADMRYAAEHITSRDDG  178
usage_00057.pdb       119  AAAPDLPSVIYNSPYYGFATRADLFFALRAEHPNLVGFKEFGGNADMRYAAEHITSRDDG  178
                            AAPdlP VIYNSPYYGFATRADLFFaLRAEHpNLVGFKEFGG AD RYAAE ITSRDDg

usage_00044.pdb       173  VTL-IGVDTAVVHGFVNCGATGAITGIGNVLPKEVIHLCKLSQAAAKGDADARARALELE  231
usage_00047.pdb       179  VSLMIGVDTAVFHGFVNCGATGAITGIGNVLPKEVIHLCNLSQAAALGDVDARQRAQELE  238
usage_00056.pdb       179  VSLMIGVDTAVFHGFVNCGATGAITGIGNVLPKEVIHLCNLSRAAAAGDVDARQRAQELE  238
usage_00057.pdb       179  VSLMIGVDTAVFHGFVNCGATGAITGIGNVLPKEVIHLCNLSRAAAAGDVDARQRAQELE  238
                           VsL IGVDTAVfHGFVNCGATGAITGIGNVLPKEVIHLCnLS AAA GDvDARqRAqELE

usage_00044.pdb       232  QALAVLSSFDEGPDLVLYFKY--VLKGDKEYTLHFNETDALTDSQRGYVEAQFKLFNSWY  289
usage_00047.pdb       239  QALAVLSSFDEGPDLVLYFKHMMVLKGDKEYTLH--------------------------  272
usage_00056.pdb       239  QALAVLSSFDEGPDLVLYFKHMMVLKGDKEYTLHFNETDALTESQRGYVEAQFKLFNTWY  298
usage_00057.pdb       239  QALAVLSSFDEGPDLVLYFKHMMVLKGDKEYTLHFNETDALTESQRGYVEAQFKLFNTWY  298
                           QALAVLSSFDEGPDLVLYFKh  VLKGDKEYTLH                          

usage_00044.pdb       290  ADW---  292
usage_00047.pdb            ------     
usage_00056.pdb       299  AEW---  301
usage_00057.pdb       299  AEWSKL  304
                                 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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