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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Thu Jan 21 00:12:08 2021
# Report_file: c_1408_20.html
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#====================================
# Aligned_structures: 9
#   1: usage_00002.pdb
#   2: usage_00003.pdb
#   3: usage_00867.pdb
#   4: usage_00870.pdb
#   5: usage_01181.pdb
#   6: usage_01222.pdb
#   7: usage_01297.pdb
#   8: usage_01615.pdb
#   9: usage_01616.pdb
#
# Length:        116
# Identity:       61/116 ( 52.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     61/116 ( 52.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           55/116 ( 47.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00002.pdb         1  SQFCLQRIHQGLIFYEKLLGSDIFTGEPSLLPDSPVGQLHASLLGLSQLLQP--------   52
usage_00003.pdb         1  -QFCLQRIHQGLIFYEKLLGSDIFTGEPSLLPDSPVGQLHASLLGLSQLLQ---------   50
usage_00867.pdb         1  -QFCLQRIHQGLIFYEKLLGSDIFTGEPSLLPDSPVGQLHASLLGLSQLLQPEG-----H   54
usage_00870.pdb         1  SQFCLQRIHQGLIFYEKLLGSDIFTGEPSLLPDSPVGQLHASLLGLSQLLQPEG-----H   55
usage_01181.pdb         1  -QFCLQRIHQGLIFYEKLLGSDIFTGEPSLLPDSPVGQLHASLLGLSQLLQP--------   51
usage_01222.pdb         1  SQFCLQRIHQGLIFYEKLLGSDIFTGEP-----SPVGQLHASLLGLSQLLQP--------   47
usage_01297.pdb         1  SQFCLQRIHQGLIFYEKLLGSDIFTGEPSLLPDSPVGQLHASLLGLSQLLQPEG------   54
usage_01615.pdb         1  --FCLQRIHQGLIFYEKLLGSDIFTGEPSLLPDSPVGQLHASLLGLSQLLQPEGHHWETQ   58
usage_01616.pdb         1  --FCLQRIHQGLIFYEKLLGSDIFTGEPSLLPDSPVGQLHASLLGLSQLLQPEG-----H   53
                             FCLQRIHQGLIFYEKLLGSDIFTGEP     SPVGQLHASLLGLSQLLQ         

usage_00002.pdb        53  ---------------QP-------WQRLLLRFKILRSLQAFVAVAARVFAHGAAT-   85
usage_00003.pdb        51  ---------------QP-------WQRLLLRFKILRSLQAFVAVAARVFAHGAAT-   83
usage_00867.pdb        55  -H---------LSPSQP-------WQRLLLRFKILRSLQAF---------------   78
usage_00870.pdb        56  --HWETQQIPSLSPSQP-------WQRLLLRFKILRSLQAF---------------   87
usage_01181.pdb        52  ---------L--SPSQP-------WQRLLLRFKILRSLQAFVAVAARVFAHGAATL   89
usage_01222.pdb        48  -----------------EGHHWETWQRLLLRFKILRSLQAFVAVAARVFAHGAA--   84
usage_01297.pdb        55  -----------LSPSQP-------WQRLLLRFKILRSLQAFVAVAARVFAHGAATL   92
usage_01615.pdb        59  Q-------IPSLSPSQP-------WQRLLLRFKILRSLQAFVAVAARVFAHGAAT-   99
usage_01616.pdb        54  H--------PSLSPSQP-------WQRLLLRFKILRSLQAFVAVAARVFAHGAA--   92
                                                   WQRLLLRFKILRSLQAF               


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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