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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Wed Jan 20 22:56:07 2021
# Report_file: c_0126_12.html
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#====================================
# Aligned_structures: 3
#   1: usage_00027.pdb
#   2: usage_00052.pdb
#   3: usage_00079.pdb
#
# Length:        169
# Identity:      127/169 ( 75.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    132/169 ( 78.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           37/169 ( 21.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00027.pdb         1  --NYMPGYHSKKDFIATQGPLPNTLKDFWRMVWEKNVYAIIMLT------------EYWP   46
usage_00052.pdb         1  --NYMPGYHSKKDFIATQGPLPNTLKDFWRMVWEKNVYAIVMLT-KCVEQGRTKCEEYWP   57
usage_00079.pdb         1  NANYMPGYHSKKDFIATQGPLPNTLKDFWRMVWEKNVYAIIMLTK-----------EYWP   49
                             NYMPGYHSKKDFIATQGPLPNTLKDFWRMVWEKNVYAIiMLT            EYWP

usage_00027.pdb        47  S--AQDYGDITVAMTSEIVL--WTIRDFTVKNIQ--ESHPLRQFHFT---------TTDL   91
usage_00052.pdb        58  SKQAQDYGDITVAMTSEVVLPEWTIRDFVVKNMQSSESHPLRQFHFTSWPDHGVPDTTDL  117
usage_00079.pdb        50  SKQAQDYGDITVAMTSEIVLPEWTIRDFTVKNIQTSESHPLRQFHFTSWPDHGVPDTTDL  109
                           S  AQDYGDITVAMTSEiVL  WTIRDFtVKNiQ  ESHPLRQFHFT         TTDL

usage_00027.pdb        92  LINFRYLVRDY--------PILVHCSAGVGRTGTFIAIDRLIYQIENEN  132
usage_00052.pdb       118  LINFRYLVRDYMKQIPPESPILVHCSAGVGRTGTFIAIDRLIYQIENEN  166
usage_00079.pdb       110  LINFRYLVRDYM-----ESPILVHSSAGVGRTGTFIAIDRLIYQIENEN  153
                           LINFRYLVRDY        PILVHcSAGVGRTGTFIAIDRLIYQIENEN


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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