################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:32:33 2021 # Report_file: c_0468_4.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00012.pdb # 2: usage_00013.pdb # 3: usage_00016.pdb # 4: usage_00041.pdb # 5: usage_00042.pdb # 6: usage_00053.pdb # 7: usage_00062.pdb # 8: usage_00064.pdb # 9: usage_00087.pdb # 10: usage_00088.pdb # 11: usage_00089.pdb # # Length: 84 # Identity: 5/ 84 ( 6.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 7/ 84 ( 8.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 24/ 84 ( 28.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00012.pdb 1 -GFARIAIAN-EPPFTAVGADGKVSGAAPDVAREIFKRLGVADVVASISEYGAMIPGLQA 58 usage_00013.pdb 1 ---------------------GKVSGAAPDVAREIFKRLGVADVVASISEYGAMIPGLQA 39 usage_00016.pdb 1 ---IKFATEATYPPYVY-G--GQVEGFGADIVKAVCKQ-QA-VCTISNQPWDSLIPSLKL 52 usage_00041.pdb 1 -GEIRIGTEGAFPPFNYFDERNQLTGFEVDLGNAIAERLGL-KPRWIAQSFDTLLIQLNQ 58 usage_00042.pdb 1 -GEIRIGTEGAFPPFNYFDERNQLTGFEVDLGNAIAERLGL-KPRWIAQSFDTLLIQLNQ 58 usage_00053.pdb 1 ARTLHFGTSATYAPYEFVDADNKIVGFDIDVANAVCKEMQA-ECSFTNQSFDSLIPSLRF 59 usage_00062.pdb 1 ---ITIATEGSYAPYNFKDAGGKLIGFDIDLGNDLCKRMNI-ECKFVEQAWDGIIPSLTA 56 usage_00064.pdb 1 ---ITIATEGSYAPYNFKDAGGKLIGFDIDLGNDLCKRMNI-ECKFVEQAWDGIIPSLTA 56 usage_00087.pdb 1 ---ITIATEGSYAPYNFKDAGGKLIGFDIDLGNDLCKRMNI-ECKFVEQAWDGIIPSLTA 56 usage_00088.pdb 1 -KSITIATEGSYAPYNFKDAGGKLIGFDIDLGNDLCKRMNI-ECKFVEQAWDGIIPSLTA 58 usage_00089.pdb 1 -KSITIATEGSYAPYNFKDAGGKLIGFDIDLGNDLCKRMNI-ECKFVEQAWDGIIPSLTA 58 G D L usage_00012.pdb 59 GRHDAITAGLFMKPERCAAVAYSQ 82 usage_00013.pdb 40 GRHDAITAGLFMKPERCAAVAYSQ 63 usage_00016.pdb 53 GKFDALFGG-NITTARQKEVDFTD 75 usage_00041.pdb 59 GRFDFVIASHGITEERARAVDFTN 82 usage_00042.pdb 59 GRFDFVIASHGITEERARAVDFTN 82 usage_00053.pdb 60 KKFDAVIAGMDMTPKREQQVSFSQ 83 usage_00062.pdb 57 GRYDAIMAAMGIQPAREKVIAFSR 80 usage_00064.pdb 57 GRYDAIMAAMGIQPAREKVIAFSR 80 usage_00087.pdb 57 GRYDAIMAAMGIQPAREKVIAFSR 80 usage_00088.pdb 59 GRYDAIMAAMGIQPAREKVIAFSR 82 usage_00089.pdb 59 GRYDAIMAAMGIQPAREKVIAFSR 82 g D a R #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################