################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:30:06 2021 # Report_file: c_0055_8.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00231.pdb # 2: usage_00240.pdb # 3: usage_00308.pdb # 4: usage_00309.pdb # 5: usage_00310.pdb # 6: usage_00311.pdb # 7: usage_00312.pdb # 8: usage_00385.pdb # 9: usage_00386.pdb # 10: usage_00387.pdb # 11: usage_00388.pdb # # Length: 214 # Identity: 60/214 ( 28.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 108/214 ( 50.5%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 44/214 ( 20.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00231.pdb 1 SSFI------SKALAAYEGGAVGIRANTKEDILAIKETVDLPVIGIVKRDYDHSDVFITA 54 usage_00240.pdb 1 --------MPLMAKAAQEAGAVGIRANSVRDIKEIQAITDLPIIGIIKKDYPPQEPFITA 52 usage_00308.pdb 1 ----SSFIMGRMAIAAKQGGAAAIRAQGVNDINEIKEVTKLPIIGIIARNYDDSEIYITP 56 usage_00309.pdb 1 ----SSFIMGRMAIAAKQGGAAAIRAQGVNDINEIKEVTKLPIIGIIARNYDDSEIYITP 56 usage_00310.pdb 1 ----SSFIMGRMAIAAKQGGAAAIRAQGVNDINEIKEVTKLPIIGIIKRNYDDSEIYITP 56 usage_00311.pdb 1 ----SSFIMGRMAIAAKQGGAAAIRAQGVNDINEIKEVTKLPIIGIIKRNYDDSEIYITP 56 usage_00312.pdb 1 ----SSFIMGRMAIAAKQGGAAAIRAQGVNDINEIKEVTKLPIIGIIKRNYDDSEIYITP 56 usage_00385.pdb 1 ----SSFIMGRMAIAAKQGGAAAIRAQGVNDINEIKEVTKLPIIGIIKRNYDDSEIYITP 56 usage_00386.pdb 1 ----SSFIMGRMAIAAKQGGAAAIRAQGVNDINEIKEVTKLPIIGIIKRNYDDSEIYITP 56 usage_00387.pdb 1 ----SSFIMGRMAIAAKQGGAAAIRAQGVNDINEIKEVTKLPIIGIIKRNYDDSEIYITP 56 usage_00388.pdb 1 ----SSFIMGRMAIAAKQGGAAAIRAQGVNDINEIKEVTKLPIIGIIKRNYDDSEIYITP 56 mA AA gGA IRA v DI eIke t LPiIGIi r Yd se IT usage_00231.pdb 55 TSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHA-P-NVEIADIATVEEAKNA 112 usage_00240.pdb 53 TMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLVA 112 usage_00308.pdb 57 TMKEVDELLKTDCEMIALDATKRKRPNGENVKDLVDAIHAK-G-RLAMADISTLEEGIEA 114 usage_00309.pdb 57 TMKEVDELLKTDCEMIALDATKRKRPNGENVKDLVDAIHAK-G-RLAMADISTLEEGIEA 114 usage_00310.pdb 57 TMKEVDELLKTDCEMIALDATKRKRPNGENVKDLVDAIHAK-G-RLAMADISTLEEGIEA 114 usage_00311.pdb 57 TMKEVDELLKTDCEMIALDATKRKRPNGENVKDLVDAIHAK-G-RLAMADISTLEEGIEA 114 usage_00312.pdb 57 TMKEVDELLKTDCEMIALDATKRKRPNGENVKDLVDAIHAK-G-RLAMADISTLEEGIEA 114 usage_00385.pdb 57 TMKEVDELLKTDCEMIALDATKRKRPNGENVKDLVDAIHAK-G-RLAMADISTLEEGIEA 114 usage_00386.pdb 57 TMKEVDELLKTDCEMIALDATKRKRPNGENVKDLVDAIHAK-G-RLAMADISTLEEGIEA 114 usage_00387.pdb 57 TMKEVDELLKTDCEMIALDATKRKRPNGENVKDLVDAIHAK-G-RLAMADISTLEEGIEA 114 usage_00388.pdb 57 TMKEVDELLKTDCEMIALDATKRKRPNGENVKDLVDAIHAK-G-RLAMADISTLEEGIEA 114 TmkEVDeL ce IAlDaTkr Rp g k l mADIsT eEg A usage_00231.pdb 113 ARLGFDYIGTTLHGYTSYTQGQLLYQN----D-FQFLKDVLQSVDAKVIAEGNVITPDYK 167 usage_00240.pdb 113 HQAGIDFVGTTLSGYTPYSR-------QEAGPDVALIEALCKAG-IAVIAEGKIHSPEE- 163 usage_00308.pdb 115 EKLGFDCVSTTLSGYTPYSK-------QSNSVDFELLEELVKTVKIPVICEGRINTPEE- 166 usage_00309.pdb 115 EKLGFDCVSTTLSGYTPYSK-------QSNSVDFELLEELVKTVKIPVICEGRINTPEE- 166 usage_00310.pdb 115 EKLGFDCVSTTLSGYTPYSK-------QSNSVDFELLEELVKTVKIPVICEGRINTPEE- 166 usage_00311.pdb 115 EKLGFDCVSTTLSGYTPYSK-------QSNSVDFELLEELVKTVKIPVICEGRINTPEE- 166 usage_00312.pdb 115 EKLGFDCVSTTLSGYTPYSK-------QSNSVDFELLEELVKTVKIPVICEGRINTPEE- 166 usage_00385.pdb 115 EKLGFDCVSTTLSGYTPYSK-------QSNSVDFELLEELVKTVKIPVICEGRINTPEE- 166 usage_00386.pdb 115 EKLGFDCVSTTLSGYTPYSK-------QSNSVDFELLEELVKTVKIPVICEGRINTPEE- 166 usage_00387.pdb 115 EKLGFDCVSTTLSGYTPYSK-------QSNSVDFELLEELVKTVKIPVICEGRINTPEE- 166 usage_00388.pdb 115 EKLGFDCVSTTLSGYTPYSK-------QSNSVDFELLEELVKTVKIPVICEGRINTPEE- 166 lGfD v TTLsGYTpYs f lle l k v i VI EG i tPee usage_00231.pdb 168 R----VDLGVHCSVVGGAITR------------- 184 usage_00240.pdb 164 -AKKINDLGVAGIVVGGAITRPKEIAERFIEALK 196 usage_00308.pdb 167 -LKKALDLGAYSAVVGGAITR------------- 186 usage_00309.pdb 167 -LKKALDLGAYSAVVGGAITR------------- 186 usage_00310.pdb 167 -LKKALDLGAYSAVVGGAITRPQQITKRFTDIL- 198 usage_00311.pdb 167 -LKKALDLGAYSAVVGGAITRPQQITKRFTDIL- 198 usage_00312.pdb 167 -LKKALDLGAYSAVVGGAITRP------------ 187 usage_00385.pdb 167 -LKKALDLGAYSAVVGGAITRPQQITKRFTDIL- 198 usage_00386.pdb 167 -LKKALDLGAYSAVVGGAITRPQQITKRFTDIL- 198 usage_00387.pdb 167 -LKKALDLGAYSAVVGGAITR------------- 186 usage_00388.pdb 167 -LKKALDLGAYSAVVGGAITR------------- 186 DLG VVGGAITR #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################