################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:10:05 2021 # Report_file: c_1422_13.html ################################################################################################ #==================================== # Aligned_structures: 10 # 1: usage_00035.pdb # 2: usage_00038.pdb # 3: usage_00267.pdb # 4: usage_00337.pdb # 5: usage_00362.pdb # 6: usage_00363.pdb # 7: usage_00524.pdb # 8: usage_00552.pdb # 9: usage_01099.pdb # 10: usage_01131.pdb # # Length: 58 # Identity: 2/ 58 ( 3.4%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 18/ 58 ( 31.0%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 25/ 58 ( 43.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00035.pdb 1 SEETIRNAFGMFDELDTKKLNIEYIKDLLENMGDNF----NKDEM--RMT-------- 44 usage_00038.pdb 1 SEETIRNAFGMFDELDTKKLNIEYIKDLLENMGDNF----NKDEM--RMT-------- 44 usage_00267.pdb 1 SEETIRNAFGMFDEDATKKLNIEYIKDLLENMGDNF----NKDEM--RMT-------- 44 usage_00337.pdb 1 SEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNF----NKDEM--RMT---F---- 45 usage_00362.pdb 1 --DALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNF----SKEEI--KNV---WK--- 44 usage_00363.pdb 1 --DALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNF----SKEEI--KNV---WK--- 44 usage_00524.pdb 1 SEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNF----NKDEM--RMT---FK--- 46 usage_00552.pdb 1 -EETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNF----NKDEM--RMT---FKEA- 47 usage_01099.pdb 1 SEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNF----NKDEM--RMT-------- 44 usage_01131.pdb 1 TGVTARRIFALAWS-----SSATMIVIGFIAS----ILEGATLPAFAIVFGRMFQVFT 49 RnaF mfde y kdllenm k e #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################