################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:22:44 2021 # Report_file: c_1060_3.html ################################################################################################ #==================================== # Aligned_structures: 24 # 1: usage_00004.pdb # 2: usage_00008.pdb # 3: usage_00011.pdb # 4: usage_00025.pdb # 5: usage_00026.pdb # 6: usage_00027.pdb # 7: usage_00029.pdb # 8: usage_00038.pdb # 9: usage_00039.pdb # 10: usage_00050.pdb # 11: usage_00051.pdb # 12: usage_00060.pdb # 13: usage_00061.pdb # 14: usage_00076.pdb # 15: usage_00079.pdb # 16: usage_00089.pdb # 17: usage_00092.pdb # 18: usage_00106.pdb # 19: usage_00109.pdb # 20: usage_00110.pdb # 21: usage_00114.pdb # 22: usage_00116.pdb # 23: usage_00142.pdb # 24: usage_00152.pdb # # Length: 40 # Identity: 9/ 40 ( 22.5%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 10/ 40 ( 25.0%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 18/ 40 ( 45.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00004.pdb 1 RSEDTATYYCTR--------------M-DYWGQGTTVTVS 25 usage_00008.pdb 1 RAEDTAVYYCTRGFG---D-GG---YF-DVWGQGTLVTVS 32 usage_00011.pdb 1 KSEDTAMYYCARGRG---Y--V---WF-AYWGQGTTVTVS 31 usage_00025.pdb 1 RAEDTAVYYCARGRW---Y-RR---AL-DYWGQGTLVTVS 32 usage_00026.pdb 1 RAEDTAVYYCARGRW---Y-RR---AL-DYWGQGTLVTVS 32 usage_00027.pdb 1 RAEDTAVYYCARGRW---Y-RR---AL-DYWGQGTLVTVS 32 usage_00029.pdb 1 TSEDTAVYFCARDY-------E---GF-AYWGQGTLVTV- 28 usage_00038.pdb 1 RSEDTALYYCARGQ------------GRPYWGQGTSVTV- 27 usage_00039.pdb 1 RSEDTALYYCARGQ------------GRPYWGQGTSVTV- 27 usage_00050.pdb 1 SSEDTATYYCSYFDS---DD-Y---A-MEYWGQGTSVTVS 32 usage_00051.pdb 1 -NEDTATYFFTRG-------------T-DYWGQGTTLTVS 25 usage_00060.pdb 1 RSEDTALYYCARLLR---Y-FY---AL-DYWGQGASVTVS 32 usage_00061.pdb 1 RSEDTALYYCARLLR---Y-FY---AL-DYWGQGASVTVS 32 usage_00076.pdb 1 KPEDTAVYYCNANIE---AG-TYYGPGRDYWGQGTQVTVS 36 usage_00079.pdb 1 -AEDTAVYYCARFYD---S------FF-DIWGQGTMVTV- 28 usage_00089.pdb 1 TAVDTAVYYCARKDS---G--N---YF-PYWGQGTLVTV- 30 usage_00092.pdb 1 -SEDSAVYYCAREGS---N-NN---AL-AYWGQGTLVTVS 31 usage_00106.pdb 1 -SEDSAVYYCVSG-------------M-EYWGQGTSVTVS 25 usage_00109.pdb 1 -AEDTAVYYCARFAG---G-WG---AY-DVWGQGTLVTV- 30 usage_00110.pdb 1 -AEDSATYYCARDGY---Y-AD---AM-DYWGQGTSVTV- 30 usage_00114.pdb 1 RAEDTAVYYCARGLGKGSK-RG---AM-DYWGQGTLVTV- 34 usage_00116.pdb 1 TSEDTAVYYCGRSK-----------YF-DSWGQGTTLTVS 28 usage_00142.pdb 1 TAADTAVYYCARERL------G---IG-DYWGQGTLVTVS 30 usage_00152.pdb 1 TTEDTATYYCARY-------------G-GYWGQGTSVTVA 26 D A Y c WGQG TV #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################