################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:11:36 2021 # Report_file: c_1326_46.html ################################################################################################ #==================================== # Aligned_structures: 9 # 1: usage_00282.pdb # 2: usage_00415.pdb # 3: usage_00416.pdb # 4: usage_00417.pdb # 5: usage_00418.pdb # 6: usage_00419.pdb # 7: usage_00420.pdb # 8: usage_00421.pdb # 9: usage_00422.pdb # # Length: 62 # Identity: 6/ 62 ( 9.7%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 20/ 62 ( 32.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 25/ 62 ( 40.3%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00282.pdb 1 -KDVKERILEYLAVRQLTQGLDVR-------NKAPILVLVGP--PGVGKTSLGRSIARS- 49 usage_00415.pdb 1 --KEIQRVIEVLSR---------R-------TK-NNPVLIGE--PGVGKTAIAEGLAQQI 39 usage_00416.pdb 1 RSKEIQRVIEVLSR---------R-------TK-NNPVLIGE--PGVGKTAIAEGLAQQI 41 usage_00417.pdb 1 ---EIQRVIEVLSR---------R-------TK-NNPVLIGE--PGVGKTAIAEGLAQQI 38 usage_00418.pdb 1 -DEAVVAVAKAVRR---------ARAGLKDPKR-PIGSFIFLGPTGVGKTELARALAESI 49 usage_00419.pdb 1 --KEIQRVIEVLSR---------R-------TK-NNPVLIGE--PGVGKTAIAEGLAQQI 39 usage_00420.pdb 1 --KEIQRVIEVLSR---------R-------TK-NNPVLIGE--PGVGKTAIAEGLAQQI 39 usage_00421.pdb 1 RSKEIQRVIEVLSR---------R-------TK-NNPVLIGE--PGVGKTAIAEGLAQQI 41 usage_00422.pdb 1 RSKEIQRVIEVLSR---------R-------TK-NNPVLIGE--PGVGKTAIAEGLAQQI 41 rv e l r r k vlig pGVGKT a lA usage_00282.pdb -- usage_00415.pdb 40 IN 41 usage_00416.pdb 42 IN 43 usage_00417.pdb 39 IN 40 usage_00418.pdb 50 FG 51 usage_00419.pdb 40 IN 41 usage_00420.pdb 40 IN 41 usage_00421.pdb 42 IN 43 usage_00422.pdb 42 IN 43 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################