################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:46:24 2021 # Report_file: c_0435_6.html ################################################################################################ #==================================== # Aligned_structures: 12 # 1: usage_00011.pdb # 2: usage_00065.pdb # 3: usage_00102.pdb # 4: usage_00160.pdb # 5: usage_00249.pdb # 6: usage_00250.pdb # 7: usage_00353.pdb # 8: usage_00423.pdb # 9: usage_00462.pdb # 10: usage_00597.pdb # 11: usage_00653.pdb # 12: usage_00709.pdb # # Length: 138 # Identity: 34/138 ( 24.6%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 46/138 ( 33.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 67/138 ( 48.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00011.pdb 1 ---------DAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHG-G 50 usage_00065.pdb 1 ATAQGLIKSDAAMTVAVKMLKPSAHSTEREALMSELKVLSYLGNHENIVNLLGACTHG-G 59 usage_00102.pdb 1 ATAYGISKTGVSIQVAVKMLKE--S-SEREALMSELKMMTQLGSHENIVNLLGACTLS-G 56 usage_00160.pdb 1 ATAYGISKTGVSIQVAVKMLKE------REALMSELKMMTQLGSHENIVNLLGACTLS-G 53 usage_00249.pdb 1 ATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHG-G 59 usage_00250.pdb 1 ATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHG-G 59 usage_00353.pdb 1 ADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGG 60 usage_00423.pdb 1 ATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHG-G 59 usage_00462.pdb 1 ATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHG-G 59 usage_00597.pdb 1 GTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKS-G 59 usage_00653.pdb 1 ATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHG-G 59 usage_00709.pdb 1 ATAFGLG---AVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHG-G 56 VAVKMLK ALMSELK lG H NiVNLLGACT G usage_00011.pdb 51 PVLVITEYCCYGDLLNFLRRKAEA--------------DLDK-----EDG--RPLELRDL 89 usage_00065.pdb 60 PTLVITEYCCYGDLLNFLRRKRDSFHSSDTSPASMEDD-----------E--NALDLEDL 106 usage_00102.pdb 57 PIYLIFEYCCYGDLLNYLRSKR--------------------------------LTFEDL 84 usage_00160.pdb 54 PIYLIFEYCCYGDLLNYLRSKREK-----------------------------FLTFEDL 84 usage_00249.pdb 60 PVLVITEYCCYGDLLNFLRRKR-------------------------------QLSSRDL 88 usage_00250.pdb 60 PVLVITEYCCYGDLLNFLRRKSRVLE------------------------TDSTASTRDL 95 usage_00353.pdb 61 PLMVIVEFCKFGNLSTYLRSKRNEFVPY---------Y-----------K--DFLTLEHL 98 usage_00423.pdb 60 PVLVITEYCCYGDLLNFLRRKSRV-L--------------------------STLSTRDL 92 usage_00462.pdb 60 PVLVITEYCTYGDLLNFLRRKA-------------------------------------- 81 usage_00597.pdb 60 PIYIITEYCFYGDLVNYLHKNRDSFLSH-SMLD-----SEVKNLLSDDNS--EGLTLLDL 111 usage_00653.pdb 60 PVLVITEYCCYGDLLNFLRRKR-------------------------------QLSSRDL 88 usage_00709.pdb 57 PVLVITEYCCYGDLLNFLRR---------------------------------QLSSRDL 83 P I EyC yGdL n Lr usage_00011.pdb 90 LHFSSQVAQGMAFLASKN 107 usage_00065.pdb 107 LSFSYQVAKGMAFLASKN 124 usage_00102.pdb 85 LCFAYQVAKGMEFLEFKS 102 usage_00160.pdb 85 LCFAYQVAKGMEFLEFKS 102 usage_00249.pdb 89 LHFSSQVAQGMAFLASKN 106 usage_00250.pdb 96 LHFSSQVAQGMAFLASKN 113 usage_00353.pdb 99 ICYSFQVAKGMEFLAS-- 114 usage_00423.pdb 93 LHFSSQVAQGMAFLASKN 110 usage_00462.pdb 82 -----EAMLGPSL----- 89 usage_00597.pdb 112 LSFTYQVARGMEFLASKN 129 usage_00653.pdb 89 LHFSSQVAQGMAFLASKN 106 usage_00709.pdb 84 LHFSSQVAQGMAFLASKN 101 qva Gm f #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################