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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Wed Jan 20 23:37:47 2021
# Report_file: c_1081_1.html
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#====================================
# Aligned_structures: 7
#   1: usage_00046.pdb
#   2: usage_00047.pdb
#   3: usage_00048.pdb
#   4: usage_00049.pdb
#   5: usage_00050.pdb
#   6: usage_00254.pdb
#   7: usage_00418.pdb
#
# Length:         80
# Identity:        0/ 80 (  0.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     16/ 80 ( 20.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           35/ 80 ( 43.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00046.pdb         1  ------NLKNEVMSYVAALARLSEKHVNTKIIN-VNRLILLTGPPGTGKTSLCK---GLA   50
usage_00047.pdb         1  ------NLKNEVMSYVAALARLSEKHVNTKIIN-VNRLILLTGPPGTGKTSLCK---GLA   50
usage_00048.pdb         1  -------LKNEVMSYVAALARLSEKHVNTKIIN-VNRLILLTGPPGTGKTSLCK---GLA   49
usage_00049.pdb         1  -------LKNEVMSYVAALARLSEKHVNTKIIN-VNRLILLTGPPGTGKTSLCK---GLA   49
usage_00050.pdb         1  -------LKNEVMSYVAALARLSEKHVNTKIIN-VNRLILLTGPPGTGKTSLCK---GLA   49
usage_00254.pdb         1  NKELLDKLVEIQQFKDRR-ADVLVHH-------VNKVLLLA-------GSYHTSKKIGIP   45
usage_00418.pdb         1  ---------GGALAVLSKFLEAVVST----NVI--NATLVVYAEKGAGKTSFLS---TYA   42
                                              a     h         n l l        kts      g a

usage_00046.pdb        51  QHLSIRMNDKYSKSVMLE--   68
usage_00047.pdb        51  QHLSIRMNDKYSKSVMLEIN   70
usage_00048.pdb        50  QHLSIRMNDKYSKSVMLEIN   69
usage_00049.pdb        50  QHLSIRMNDKYSKSVMLEIN   69
usage_00050.pdb        50  QHLSIRMNDKYSKSVMLEIN   69
usage_00254.pdb        46  LHIQDFK--SSKKIVVVN--   61
usage_00418.pdb        43  EQLSLASG--Q-VVGHLS--   57
                            hls        k v l   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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