################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:04:28 2021 # Report_file: c_0270_21.html ################################################################################################ #==================================== # Aligned_structures: 4 # 1: usage_00008.pdb # 2: usage_00009.pdb # 3: usage_00010.pdb # 4: usage_00280.pdb # # Length: 270 # Identity: 11/270 ( 4.1%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 127/270 ( 47.0%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 143/270 ( 53.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00008.pdb 1 TTSERVVDLLNQAALITNDSKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKS---IE 57 usage_00009.pdb 1 -----------------------LYKVALQWMVKS--------------------RVISE 17 usage_00010.pdb 1 -----------------------LYKVALQWMVKS--------------------RVISE 17 usage_00280.pdb 1 -----------------------LYKVALQWMVKS---------------------VISE 16 lyKvalqwmvks sE usage_00008.pdb 58 VRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVA-LQ---- 112 usage_00009.pdb 18 LQEACWD-----------MVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSP-RMAD 65 usage_00010.pdb 18 LQEACWD-----------MVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSP-RMAD 65 usage_00280.pdb 17 LQEACWD-----------MVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSP-RMAD 64 lqeacwd mvsamagdiilLLdsdNdgirthAIkfvegLivtl p usage_00008.pdb 113 -----------WMVKSR-VI----SELQEACWDMVSAMAGDIILLLDS-DNDGIRTHAIK 155 usage_00009.pdb 66 SEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVH-P-AISSINLTTALG 123 usage_00010.pdb 66 SEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVH-P-AISSINLTTALG 123 usage_00280.pdb 65 SEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVH----ISSINLTTALG 120 sldrip dh ynvlweegkaaleqllkfmvh issinlTtAlg usage_00008.pdb 156 FVEGLIVTLSP--------------------RMADSEIPRRQEHDI-------------- 181 usage_00009.pdb 124 SLANIARQRP-MFMSEVIQAYETLHANLPPTLAKSQV--SSVRKN-LKLHLLSVLKHPAS 179 usage_00010.pdb 124 SLANIARQRP-MFMSEVIQAYETLHANLPPTLAKSQV--SSVRKN-LKLHLLSVLKHPAS 179 usage_00280.pdb 121 SLANIARQRP-MFMSEVIQAYETLHAN----LAKSQV--SSVRKN-LKLHLLSVLKHPAS 172 slaniarqrp laksqv ssvrkn usage_00008.pdb 182 ---------SLDRIPRD---HPYIQ----- 194 usage_00009.pdb 180 LEFQAQITTLLVDLGT-PQAE----IARNM 204 usage_00010.pdb 180 LEFQAQITTLLVDLGT-PQAE----IARNM 204 usage_00280.pdb 173 LEFQAQITTLLVDLGT-PQAE----IARNM 197 lLvdlgt e #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################