################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:33:04 2021 # Report_file: c_0615_5.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00014.pdb # 2: usage_00034.pdb # 3: usage_00049.pdb # 4: usage_00073.pdb # 5: usage_00074.pdb # 6: usage_00086.pdb # 7: usage_00106.pdb # 8: usage_00107.pdb # 9: usage_00108.pdb # 10: usage_00109.pdb # 11: usage_00178.pdb # # Length: 146 # Identity: 6/146 ( 4.1%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 11/146 ( 7.5%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 81/146 ( 55.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00014.pdb 1 --------------------------M---IPA-KKGSIVFTASISSFTAG--EGVS-HV 27 usage_00034.pdb 1 --------------APWQC----AQEVVQHIKAERKGSIINITSILSQSTN--LG-V-SP 38 usage_00049.pdb 1 -----------------------APHM---AEA-GWGRVLFIGSVTTFTAGGPVP-I-PA 31 usage_00073.pdb 1 -----------------------MRAM---MKK-RHGRIITIGSV------------VAN 21 usage_00074.pdb 1 -----------------------MRAM---MKK-RHGRIITIGSV------------V-- 19 usage_00086.pdb 1 TEEKFEKVINANLTGAFRVAQRASRSM---QRN-KFGRMIFIGSVSGLWGI--GN-Q-AN 52 usage_00106.pdb 1 -----------------LCTQAVAPHM---IAA-KYGRILNASSVVGLYGN--FG-Q-TN 35 usage_00107.pdb 1 AEAQFDAVISVNLKGVFLCTQAVAPHM---IAA-KYGRILNASSVVGLYGN--FG-Q-TN 52 usage_00108.pdb 1 -----------------LCTQAVAPHM---IAA-KYGRILNASSVVGLYGN--FG-Q-TN 35 usage_00109.pdb 1 -----------------LCTQAVAPHM---IAA-KYGRILNASSVVGLYGN--FG-Q-TN 35 usage_00178.pdb 1 -----------------------FPYM---KKQ-NYGRIIMTSSNSGIYGN--FG-Q-VN 29 m G S usage_00014.pdb 28 YTATKHAVLGLTTSLCTELGEYGIRVNCVSPYI--VASPLLTDVFG---V--DSSRVEEL 80 usage_00034.pdb 39 YCASKAGLRHLTEV-AVELARFGINVNAIAPGY---ITEI------NEEYLT--SEVGQQ 86 usage_00049.pdb 32 YTTAKTALLGLTRALAKEWARLGIRVNLLCPGY--VETEF------TLPLRQ-NPELYEP 82 usage_00073.pdb 22 YAAAKAGLIGFSKSLAREVASRGITVNVVAPGF--IET----------AL---SDDQRAG 66 usage_00074.pdb 20 -AAAKAGLIGFSKSLAREVASRGITVNVVAPGF--IETDM------TRAL---SDDQRAG 67 usage_00086.pdb 53 YAASKAGVIGMARSIARELSKANVTANVVAPGY--IDTDM------TRAL---DERIQQG 101 usage_00106.pdb 36 YVAAKSGVIGMTKVWARELGRYGITVNAIAPGF--IATEM------VQQM---PERVLEA 84 usage_00107.pdb 53 YVAAKSGVIGMTKVWARELGRYGITVNAIAPGF--IATEM------VQQM---PERVLEA 101 usage_00108.pdb 36 YVAAKSGVIGMTKVWARELGRYGITVNAIAPGF--IATEM------VQQM---PERVLEA 84 usage_00109.pdb 36 YVAAKSGVIGMTKVWARELGRYGITVNAIAPGF--IATEM------VQQM---PERVLEA 84 usage_00178.pdb 30 YTAAKMGLIGLANTVAIEGARNNVLCNVIV-PTEG-------------IL---PDILFNE 72 a K g a E N usage_00014.pdb 81 AHQAANLKGTLLRAEDVADAVAYL-- 104 usage_00034.pdb 87 LLKKIP-TRKFVEFDDLNGPLLLLA- 110 usage_00049.pdb 83 ITARIP-MGRWARPEEIARVAAVLCG 107 usage_00073.pdb 67 ILAQVP-AGRLGGAQEIANAVAFLAS 91 usage_00074.pdb 68 ILAQVP-AGRLGGAQEIANAVAFLAS 92 usage_00086.pdb 102 ALQFIP-AKRVGTPAEVAGVVSFLAS 126 usage_00106.pdb 85 MVARTP-VGRIGDPVDIARAYLFLAS 109 usage_00107.pdb 102 MVARTP-VGRIGDPVDIARAYLFLA- 125 usage_00108.pdb 85 MVARTP-VGRIGDPVDIARAYLFLAS 109 usage_00109.pdb 85 MVARTP-VGRIGDPVDIARAYLFLAS 109 usage_00178.pdb 73 -----------LKPKLIAPVVAYLCH 87 a L #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################