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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Thu Jan 21 00:45:12 2021
# Report_file: c_0276_5.html
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#====================================
# Aligned_structures: 12
#   1: usage_00004.pdb
#   2: usage_00018.pdb
#   3: usage_00025.pdb
#   4: usage_00029.pdb
#   5: usage_00030.pdb
#   6: usage_00031.pdb
#   7: usage_00033.pdb
#   8: usage_00034.pdb
#   9: usage_00040.pdb
#  10: usage_00041.pdb
#  11: usage_00050.pdb
#  12: usage_00051.pdb
#
# Length:        111
# Identity:       41/111 ( 36.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     65/111 ( 58.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            9/111 (  8.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00004.pdb         1  -IQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPS   59
usage_00018.pdb         1  -IQMTQSPSSLSASVGDRVTITCKASQDVSIGVAWYQDKPGKAPKLLIYSASYRYTGVPS   59
usage_00025.pdb         1  -VEMTQSPSSFSVSLGDRVTITCKASEDIYNRLAWYQQKPGNAPRLLISGATSLETEVPS   59
usage_00029.pdb         1  --QLTQSPSSLSASVGDRVTITCRASQSIGSYLNWYQQKPGKAPKLLIYAASTLQSGVPS   58
usage_00030.pdb         1  -IQLTQSPSSLSASVGDRVTITCSASSSVNH-MFWYQQKPGKAPKPWIYLTSNLASGVPS   58
usage_00031.pdb         1  -IQLTQSPSSLSASVGDRVTITCSASSSVNH-MFWYQQKPGKAPKPWIYLTSNLASGVPS   58
usage_00033.pdb         1  --QLTQSPSFLSASVADRVTITCRASQAVRSSLAWYQQKPGKAPQLLIYSASTLENGVSS   58
usage_00034.pdb         1  --QMTQSPSFLSASVGDRVTITCRASQGITTYLGWYQQRPGKAPQLLIYAASSLQSGVPP   58
usage_00040.pdb         1  -IQLTQSPSFLSASVGDKVTITCRASQGVRNELAWYQQKPGKAPNLLIYYASTLQSGVPS   59
usage_00041.pdb         1  -IQLTQSPSFLSASVGDKVTITCRASQGVRNELAWYQQKPGKAPNLLIYYASTLQSGVPS   59
usage_00050.pdb         1  -IQMTQSPSSLSASVGDRVTITCKASQDVSIGVAWYQQKPGKAPKLLIYSASYRYTGVPS   59
usage_00051.pdb         1  DIQMTQSPSSLSASVGDRVTITCKASQDVSIGVAWYQQKPGKAPKLLIYSASYRYTGVPS   60
                             q TQSPS lSaSvgD VTITC AS        WYQqkPGkAP   Iy  s    gVps

usage_00004.pdb        60  RFSGSRSGTDFTLTISSLQPEDFATYYCQQYYSYYYPFTFGQGTKVEIKRT  110
usage_00018.pdb        60  RFSGSGSGTDFTLTISSLQPEDFATYYCQQYYIYPYTFGQG--TKVEIKG-  107
usage_00025.pdb        60  RFSGSGSGKDYTLSITSLQTEDVATYYCQQYWSTWTFGGG---TKLEIKRA  107
usage_00029.pdb        59  RFSGSGSGTDFTLTISSLQPEDSATYYCQQSYSTPFTFGPG--TKVDIRRT  107
usage_00030.pdb        59  RFSGSGSGTDYTLTISSLQPEDFATYYCQQWSGNPWTFGQG--TKVEI---  104
usage_00031.pdb        59  RFSGSGSGTDYTLTISSLQPEDFATYYCQQWSGNPWTFGQG--TKVEI---  104
usage_00033.pdb        59  RFSGSGPGTEFTLTISSLQPEDVGTYYCQQLNTYPFTFGPG--TKVEIKRT  107
usage_00034.pdb        59  RFSGSGSGTEFTLTISSLQPEDFATYYCQQLNTYPYTFGPG--TRLEI---  104
usage_00040.pdb        60  RFSATGSGTHFTLTVSSLQPEDFATYFCQHMSSYPLTFGGG--TKVEI---  105
usage_00041.pdb        60  RFSATGSGTHFTLTVSSLQPEDFATYFCQHMSSYPLTFGGG--TKVEI---  105
usage_00050.pdb        60  RFSGSGSGTDFTLTISSLQPEDFATYYCQQYYIYPYTFGQG--TKVEIKG-  107
usage_00051.pdb        61  RFSGSGSGTDFTLTISSLQPEDFATYYCQQYYIYPYTFGQG--TKVEI---  106
                           RFS  gsGt  TLt sSLQpED aTY CQ        fg    Tk eI   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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