################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:47:23 2021 # Report_file: c_0882_1.html ################################################################################################ #==================================== # Aligned_structures: 12 # 1: usage_00002.pdb # 2: usage_00003.pdb # 3: usage_00004.pdb # 4: usage_00005.pdb # 5: usage_00006.pdb # 6: usage_00007.pdb # 7: usage_00008.pdb # 8: usage_00009.pdb # 9: usage_00020.pdb # 10: usage_00026.pdb # 11: usage_00028.pdb # 12: usage_00031.pdb # # Length: 94 # Identity: 6/ 94 ( 6.4%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 29/ 94 ( 30.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 23/ 94 ( 24.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00002.pdb 1 --DSVNGAKIFSANCASCHA-GGKNLVQAQKTLKKA--DLEKYGMYSAEAIIAQVTN--G 53 usage_00003.pdb 1 --DSVNGAKIFSANCASCHA-GGKNLVQAQKTLKKA--DLEKYGMYSAEAIIAQVTN--G 53 usage_00004.pdb 1 --DSVNGAKIFSANCASCHA-GGKNLVQAQKTLKKA--DLEKYGMYSAEAIIAQVTN--G 53 usage_00005.pdb 1 --DSVNGAKIFSANCASCHA-GGKNLVQAQKTLKKA--DLEKYGMYSAEAIIAQVTN--G 53 usage_00006.pdb 1 --DSVNGAKIFSANCASCHA-GGKNLVQAQKTLKKA--DLEKYGMYSAEAIIAQVTN--G 53 usage_00007.pdb 1 --DSVNGAKIFSANCASCHA-GGKNLVQAQKTLKKA--DLEKYGMYSAEAIIAQVTN--G 53 usage_00008.pdb 1 --DSVNGAKIFSANCASCHA-GGKNLVQAQKTLKKA--DLEKYGMYSAEAIIAQVTN--G 53 usage_00009.pdb 1 --DSVNGAKIFSANCASCHA-GGKNLVQAQKTLKKA--DLEKYGMYSAEAIIAQVTN--G 53 usage_00020.pdb 1 TASIEAGAKLYDGYCSQCHGIHAVSGG--VLP-DLRKLTPE-----KHQMFLGILFGGRV 52 usage_00026.pdb 1 -----QGAQIFEAHCAGCHL-NGGNIVRRGKNLKKR--AMAKNGYTSVEAIANQVTQ--G 50 usage_00028.pdb 1 ----ATGAKVFSANCAACHA-GGINLVNAEKTLKKE--ALEKFGMNSIVAITTQVTN--G 51 usage_00031.pdb 1 -----QGAQIFEAHCAGCHL-NGGNIVRRGKNLKKR--AMAKNGYTSVEAIANLVTQ--G 50 GA f a Ca CH g n v k kk s ai vt g usage_00002.pdb 54 KNAMPAFKGRLKPEQIEDVAAYVLGKADA----- 82 usage_00003.pdb 54 KNAMPAFKGRLKPEQIEDVAAYVLGKADA----- 82 usage_00004.pdb 54 KNACPAFKGRLKPEQIEDVAAYVLGKADA----- 82 usage_00005.pdb 54 KNACPAFKGRLKPEQIEDVAAYVLGKADA----- 82 usage_00006.pdb 54 KNACPAFKGRLKPEQIEDVAAYVLGKADADWK-- 85 usage_00007.pdb 54 KNACPAFKGRLKPEQIEDVAAYVLGKADA----- 82 usage_00008.pdb 54 KNACPAFKGRLKPEQIEDVAAYVLGKADAD---- 83 usage_00009.pdb 54 KNAHPAFKGRLKPEQIEDVAAYVLGKADAD---- 83 usage_00020.pdb 53 PDGMPSFADAFTPEQVDQIHQYLIKRAHDLH-QE 85 usage_00026.pdb 51 KGNMSAYGDKLSSEEIQAVSQYVLQQSQTD---- 80 usage_00028.pdb 52 KAGMPAFKGRLTDDQIAAVAAYVLDQAEKG---- 81 usage_00031.pdb 51 KGNMSAYGDKLSSEEIQAVSQYVLQQSQTD---- 80 k a l e i v Yvl #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################