################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:36:42 2021 # Report_file: c_0547_13.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00035.pdb # 2: usage_00044.pdb # 3: usage_00045.pdb # 4: usage_00056.pdb # 5: usage_00065.pdb # 6: usage_00069.pdb # 7: usage_00104.pdb # 8: usage_00205.pdb # 9: usage_00206.pdb # 10: usage_00207.pdb # 11: usage_00208.pdb # # Length: 159 # Identity: 32/159 ( 20.1%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 44/159 ( 27.7%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 45/159 ( 28.3%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00035.pdb 1 SEEQEALVLKSWAILKKDSANIALRFFLKIFEVAPSASQMFSFLRN--SD-VPL---EKN 54 usage_00044.pdb 1 -EEQEALVLKSWAVMKKDAANLGLRFFLKVFEIAPSAKQMF---------------LEKN 44 usage_00045.pdb 1 -EEQEALVLKSWAVMKKDAANLGLRFFLKVFEIAPSAKQMF---------------SEKN 44 usage_00056.pdb 1 -EKQDALVSSSFEAFKANIPQYSVVFYTSILEKAPAAKDLFS----FLANGV----DPTN 51 usage_00065.pdb 1 -ESQAALVKSSWEEFNANIPKHTHRFFILVLEIAPAAKDLFS----FLKG-TSE-VPQNN 53 usage_00069.pdb 1 -ESQAALVKSSWEEFNANIPKHTHRFFILVLEIAPAAKDLFS----FLKG-TSE-VPQNN 53 usage_00104.pdb 1 TEEQEALVVKSWSVMKKNSAELGLKLFIKIFEIAPTTKKMFS--F--LRD-SPIP-AEQN 54 usage_00205.pdb 1 --------------MKKNSAELGLKFFLKIFEIAPSAKNLFS----YLKS-P-IP-LEQN 39 usage_00206.pdb 1 TEEQEALVVKSWAVMKKNSAELGLKFFLKIFEIAPSAKNLFS----YLKP-I--P-LEQN 52 usage_00207.pdb 1 TEEQEALVVKAWAVMKKNSAELGLQFFLKIFEIAPSAKNLFS----YLK----P---EQN 49 usage_00208.pdb 1 TEEQEALVVKAWAVMKKNSAELGLQFFLKIFEIAPSAKNLFS----YLKS-V----LEQN 51 ff E AP ak F N usage_00035.pdb 55 PKLKTHAMSVFVMTCEAAAQLRKAGKVTVRDT-TLKRLGATHLKYGVGDAHFEVVKFALL 113 usage_00044.pdb 45 PKLKTHAMSVFVMTCEAAAQLRKAGKVTVR-ETTLKRLGATHLRYGVADGHFEVTGFALL 103 usage_00045.pdb 45 PKLKTHAMSVFVMTCEAAAQLRKAGKVTVRET-TLKRLGATHLRYGVADGHFEVTGFALL 103 usage_00056.pdb 52 PKLTGHAEKLFALVRDSAGQLKASGTVVADAA-LGSVH----AQKAVTDPQFVVVKEALL 106 usage_00065.pdb 54 PELQAHAGKVFKLVYEAAIQLEVTGVVVT-DA-TLKNLGSVHVSKGVADAHFPVVKEAIL 111 usage_00069.pdb 54 PELQAHAGKVFKLVYEAAIQLEVTGVVVT-DA-TLKNLGSVHVSKGVADAHFPVVKEAIL 111 usage_00104.pdb 55 PKLKPHAMSVFVMCCESAVQLRKTGKVTVRET-TLKRLGASHSKYGVVDEHFEVAKYALL 113 usage_00205.pdb 40 PKLKPHAMTVFVMTCESAVQLRKAGKVTVRES-NLKRLGAIHFKNGVVNEHFEVTRFALL 98 usage_00206.pdb 53 PKLKPHAMTVFVMTCESAVQLRKAGKVTVRES-NLKRLGAIHFKNGVVNEHFEVTRFALL 111 usage_00207.pdb 50 PKLKPHATTVFVMTCESAVQLRKAGKVTVKES-DLKRIGAIHFKTGVVNEHFEVTRFALL 108 usage_00208.pdb 52 PKLKPHATTVFVMTCESAVQLRKAGKVTVKES-DLKRIGAIHFKTGVVNEHFEVTRFALL 110 P L HA vF e A QL G V lk gV hF V A L usage_00035.pdb 114 DTIKEEVPADMWSPAMKSAWSEAYDHLVAAIKQEMK--- 149 usage_00044.pdb 104 ETIKEALPADMWSLEMKKAWAEAYSQLVAAIKREMK--- 139 usage_00045.pdb 104 ETIKEALPADMWSLEMKKAWAEAYSQLVAAIKREMK--- 139 usage_00056.pdb 107 KTIKAAV-GDKWSDELSRAWEVAYDELAAAIK------- 137 usage_00065.pdb 112 KTIKEVV-GAKWSEELNSAWTIAYDELAIVIKKEMDDAA 149 usage_00069.pdb 112 KTIKEVV-GAKWSEELNSAWTIAYDELAIVIKKEMDD-- 147 usage_00104.pdb 114 ETIKEAV-PEMWSPEMKVAWGQAYDHLVAAIKAEMNLS- 150 usage_00205.pdb 99 ETIKEAV-PEMWSPEMKNAWGEAYDQLVAAIKSEM---- 132 usage_00206.pdb 112 ETIKEAV-PEMWSPEMKNAWGEAYDQLVAAIKSEM---- 145 usage_00207.pdb 109 ETIKEAV-PEMWSPEMKNAWGVAYDQLVAAIKFEM---- 142 usage_00208.pdb 111 ETIKEAV-PEMWSPEMKNAWGVAYDQLVAAIKFEM---- 144 TIKe WS e AW AY L IK #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################