################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:29:58 2021 # Report_file: c_0875_12.html ################################################################################################ #==================================== # Aligned_structures: 6 # 1: usage_00394.pdb # 2: usage_00427.pdb # 3: usage_00440.pdb # 4: usage_00441.pdb # 5: usage_00565.pdb # 6: usage_00962.pdb # # Length: 220 # Identity: 17/220 ( 7.7%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 31/220 ( 14.1%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 77/220 ( 35.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00394.pdb 1 KTFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMN 60 usage_00427.pdb 1 --------------VIIPTIGGNTLVILAVSLEKKLQYATNYFLMSLAVADLLVGLFVMP 46 usage_00440.pdb 1 --WQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTV 58 usage_00441.pdb 1 --WQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTV 58 usage_00565.pdb 1 --GLKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLL-TLP 57 usage_00962.pdb 1 --WQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTV 58 GN Vm i t tNyfl LA A usage_00394.pdb 61 LYTLYTVIG-YWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPV---- 115 usage_00427.pdb 47 IALLTIMFEAMWPLPLVLCPAWLFLDVLFSTASIWHLCAISVDRYIAIKKPIQA---NQY 103 usage_00440.pdb 59 VNFTYAVHN-EWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPL---QP--- 111 usage_00441.pdb 59 VNFTYAVHN-EWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPL---QP--- 111 usage_00565.pdb 58 FQGTDILLG-FWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPI-------- 108 usage_00962.pdb 59 VNFTYAVHN-EWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPL---QP--- 111 W g C aS a DRY ai P usage_00394.pdb 116 -KRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGVRT---VE---D-GE-CYIQFF--- 163 usage_00427.pdb 104 N--SRATAFIKITVVWLISIGIAIPVPIK-G-------IET--VDNPNNITCV-LTK--E 148 usage_00440.pdb 112 -RLSATATKVVICVIWVLALLLAFPQGYY-S-------TTET-MPSR-VV-CM-IEWPEH 158 usage_00441.pdb 112 -RLSATATKVVICVIWVLALLLAFPQGYY-S-------TTET-MPSR-VV-CM-IEWPEH 158 usage_00565.pdb 109 -VRTSSKAQAVNVAIWALASVVGVPVAIM-G-------SAQV-EDEE-IE-CL-VEI--P 153 usage_00962.pdb 112 -RLSATATKVVICVIWVLALLLAFPQGYY-S-------TTET-MPSR-VV-CM-IEWPEH 158 i W l P C usage_00394.pdb 164 ---------SNAAVTFGTAIAA------------------ 176 usage_00427.pdb 149 ---------RFGDFMLFGSLA------------------- 160 usage_00440.pdb 159 PNKI-----YEKVYHICVTVLIYFLPLLVIGYAYTVVG-- 191 usage_00441.pdb 159 PNKI-----YEKVYHICVTVLIYFLPLLVIGYAYTVVG-- 191 usage_00565.pdb 154 ----TPQDYWGPVFAICIFLFSFIVPVLVISVCYSLMIRR 189 usage_00962.pdb 159 PNKI-----YEKVYHICVTVLIYFLPLLVIGYAYTVVG-- 191 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################