################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:30:48 2021 # Report_file: c_0116_1.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00070.pdb # 2: usage_00084.pdb # 3: usage_00085.pdb # 4: usage_00086.pdb # 5: usage_00087.pdb # 6: usage_00088.pdb # 7: usage_00089.pdb # 8: usage_00090.pdb # 9: usage_00095.pdb # 10: usage_00096.pdb # 11: usage_00135.pdb # # Length: 116 # Identity: 56/116 ( 48.3%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 68/116 ( 58.6%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 12/116 ( 10.3%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00070.pdb 1 -VLTQTPSSVSAAVGGTVTINCQASQSVYNKNYLAWYQQKPGQPPKRLIYSASTLASGVS 59 usage_00084.pdb 1 LVMTQTPSSVSEPVGGTVTIKCQASQSI--SSWLSWYQQKPGQPPKLLIYDASNLASGVP 58 usage_00085.pdb 1 LVMTQTPSSVSEPVGGTVTIKCQASQSI--SSWLSWYQQKPGQPPKLLIYDASNLASGVP 58 usage_00086.pdb 1 LVMTQTPSSVSEPVGGTVTIKCQASQSI--SSWLSWYQQKPGQPPKLLIYDASNLASGVP 58 usage_00087.pdb 1 LVMTQTPSSVSEPVGGTVTIKCQASQSI--SSWLSWYQQKPGQPPKLLIYDASNLASGVP 58 usage_00088.pdb 1 LVMTQTPSSVSEPVGGTVTIKCQASQSI--SSWLSWYQQKPGQPPKLLIYDASNLASGVP 58 usage_00089.pdb 1 LVMTQTPSSVSEPVGGTVTIKCQASQSI--SSWLSWYQQKPGQPPKLLIYDASNLASGVP 58 usage_00090.pdb 1 LVMTQTPSSVSEPVGGTVTIKCQASQSI--SSWLSWYQQKPGQPPKLLIYDASNLASGVP 58 usage_00095.pdb 1 -VLTQTTSPVSAAVGSTVTISCQSSQSVR-TNKLAWFQQKPGQPPKRLIYSASTLDFGVP 58 usage_00096.pdb 1 -VLTQTTSPVSAAVGSTVTISCQSSQSVR-TNKLAWFQQKPGQPPKRLIYSASTLDFGVP 58 usage_00135.pdb 1 -DMTQTPASVSAAVGGTVTISCQSSRSVWNNNFLSWYQQKPGQPPKLLISDASKLASGVP 59 v TQT s VS VG TVTI CQ SqS L W QQKPGQPPK LIy AS L GVp usage_00070.pdb 60 SRFKGSGSGTQFTLTISDVQCDDVATYYCLGSYDCNRA-EC-HAFGGGTKVVVEVR 113 usage_00084.pdb 59 SRFMGSGSGTEYTLTISGVQREDAATYYCLGGYPAASY-RT-AFGGG-TELEI--- 108 usage_00085.pdb 59 SRFMGSGSGTEYTLTISGVQREDAATYYCLGGYPAASY-RT-AFGGG-TELEI--- 108 usage_00086.pdb 59 SRFMGSGSGTEYTLTISGVQREDAATYYCLGGYPAASY-RT-AFGGG-TELEI--- 108 usage_00087.pdb 59 SRFMGSGSGTEYTLTISGVQREDAATYYCLGGYPAASY-RT-AFGGG-TELEI--- 108 usage_00088.pdb 59 SRFMGSGSGTEYTLTISGVQREDAATYYCLGGYPAASY-RT-AFGGG-TELEII-- 109 usage_00089.pdb 59 SRFMGSGSGTEYTLTISGVQREDAATYYCLGGYPAASY-RT-AFGGG-TELEII-- 109 usage_00090.pdb 59 SRFMGSGSGTEYTLTISGVQREDAATYYCLGGYPAASY-RT-AFGGG-TELEI--- 108 usage_00095.pdb 59 SRFSASGSGTQFTLTISDVQCDDAATYYCLGYFDCSIA-DCVAFGGG-TEVVV--- 109 usage_00096.pdb 59 SRFSASGSGTQFTLTISDVQCDDAATYYCLGYFDCSIA-DCVAFGGG-TEVVV--- 109 usage_00135.pdb 60 SRFKGSGSGTQFTLTISDLESDDAATYYCAGDLSD---WIH-TFGGG-TEVVV--- 107 SRF SGSGT TLTIS vq DaATYYClG fgGG Te #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################