################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:16:42 2021 # Report_file: c_1131_15.html ################################################################################################ #==================================== # Aligned_structures: 14 # 1: usage_00001.pdb # 2: usage_00009.pdb # 3: usage_00010.pdb # 4: usage_00064.pdb # 5: usage_00099.pdb # 6: usage_00161.pdb # 7: usage_00265.pdb # 8: usage_00266.pdb # 9: usage_00267.pdb # 10: usage_00268.pdb # 11: usage_00336.pdb # 12: usage_00348.pdb # 13: usage_00574.pdb # 14: usage_00598.pdb # # Length: 88 # Identity: 34/ 88 ( 38.6%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 49/ 88 ( 55.7%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 14/ 88 ( 15.9%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 --LINLLMSIEPDVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHI 58 usage_00009.pdb 1 PIFLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHV 60 usage_00010.pdb 1 -IFLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHV 59 usage_00064.pdb 1 -IFLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHV 59 usage_00099.pdb 1 -PLINLLMSIEPDVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHI 59 usage_00161.pdb 1 -PLINLLMSIEPDVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHI 59 usage_00265.pdb 1 -PLINLLMSIEPDVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHI 59 usage_00266.pdb 1 -PLINLLMSIEPDVIYAGHDN----TSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHI 55 usage_00267.pdb 1 -PLINLLMSIEPDVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHI 59 usage_00268.pdb 1 -PLINLLMSIEPDVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHI 59 usage_00336.pdb 1 --PVMVLENIEPEIVYAGY-----DTAENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPL 53 usage_00348.pdb 1 -PLINLLMSIEPDVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHI 59 usage_00574.pdb 1 -PLINLLMSIEPDVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHI 59 usage_00598.pdb 1 PIFLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHV 60 n L IEP v AGh LL sLN LgerQl VVKW K LPGFrNLh usage_00001.pdb 59 DDQITLIQYSWMSLMVFGLGWRSYK--- 83 usage_00009.pdb 61 DDQMAVIQYSWMGLMVFAMGWRSFTNVN 88 usage_00010.pdb 60 DDQMAVIQYSLMGLMVFAMGWRSFTNVN 87 usage_00064.pdb 60 DDQMAVIQYSWMGLMVFAMGWRSFT--- 84 usage_00099.pdb 60 DDQITLIQYSWMSLMVFGLGWRSYK--- 84 usage_00161.pdb 60 DDQITLIQYSWMSLMVFGLGWRSYK--- 84 usage_00265.pdb 60 DDQITLIQYSWMSLMVFGLGWRSYK--- 84 usage_00266.pdb 56 DDQITLIQYSWMSLMVFGLGWRSYK--- 80 usage_00267.pdb 60 DDQITLIQYSWMSLMVFGLGWRSYK--- 84 usage_00268.pdb 60 DDQITLIQYSWMSLMVFGLGWRSYK--- 84 usage_00336.pdb 54 EDQITLIQYSWMCLLSFALSWRSYK--- 78 usage_00348.pdb 60 DDQITLIQYSWMSLMVFGLGWR------ 81 usage_00574.pdb 60 DDQITLIQYSWMSLMVFGLGWRSYK--- 84 usage_00598.pdb 61 DDQMAVIQYSWMGLMVFAMGWRSFT--- 85 dDQ IQYSwM LmvF gWR #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################