################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:47:38 2021 # Report_file: c_0235_7.html ################################################################################################ #==================================== # Aligned_structures: 8 # 1: usage_00026.pdb # 2: usage_00027.pdb # 3: usage_00034.pdb # 4: usage_00061.pdb # 5: usage_00064.pdb # 6: usage_00065.pdb # 7: usage_00067.pdb # 8: usage_00075.pdb # # Length: 203 # Identity: 9/203 ( 4.4%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 15/203 ( 7.4%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 54/203 ( 26.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00026.pdb 1 KVVVITGASQGIGAGLVRAYRDRN-Y-RVVATSRSI-------KPSADPDIHTVAGDISK 51 usage_00027.pdb 1 KVVVITGASQGIGAGLVRAYRDRN-Y-RVVATSRSI-------KPSADPDIHTVAGDISK 51 usage_00034.pdb 1 KVAIVTGGSSGIGLAVVDALVRYG-A-KVVSVSLDE---------VN-V-SDHFKIDVTN 47 usage_00061.pdb 1 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELK-SIKDSRVHVLPLTVTC 59 usage_00064.pdb 1 -VIVVTGGNRGIGAAIVKLLQEMG-A-KVAFTDLAT-------D-GGNTEALGVVANVTD 49 usage_00065.pdb 1 KVCAVFGGSRGIGRAVAQLMARKG-Y-RLAVIARNL---------------EAFSCDVAK 43 usage_00067.pdb 1 ANYLVTGGSKGIGKAVVELLLQNKNH-TVINIDIQQ-------SF-SAENLKFIKADLTK 51 usage_00075.pdb 1 -VVIVTGGASGIGEATARAFIREG-A-KVVIADFSD--------------ALFIKTDVAD 43 tG GIG usage_00026.pdb 52 PETADRIVREGIERFG--RIDSLVNNAGVFLAKPFV--ETQEDYDHNLGVNVAGFFHITQ 107 usage_00027.pdb 52 PETADRIVREGIERFG--RIDSLVNNAGVFLAKPFV--ETQEDYDHNLGVNVAGFFHITQ 107 usage_00034.pdb 48 EEEVKEAVEKTTKKYG--RIDILVNNAGIEQYSPLH-LTPTEIWRRIIDVNVNGSYLMAK 104 usage_00061.pdb 60 DKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQ 119 usage_00064.pdb 50 LESMTAAAAEITDKLG--PVYGVVANAGITKDNFFP-KLTPADWDAVLNVNLKGVAYSIK 106 usage_00065.pdb 44 EHDVQNTFEELEKHLG--RVNFLVNAAGINRD-LV--RTKTEDMVSQLHTNLLGSMLTCK 98 usage_00067.pdb 52 QQDITNVLDIIK-N-V--SFDGIFLNAGILIKGSIF-DIDIESIKKVLDLNVWSSIYFIK 106 usage_00075.pdb 44 TRAVQALIARTVENYG--RLDIMFANAGIAADAPID-ELDEAAWQKTIDINLTGVYLCDK 100 g nAG N usage_00026.pdb 108 RAAAE-LKQG-----------SGHIVSITTSLVDQ---------PVGPSALASLTKGGLN 146 usage_00027.pdb 108 RAAAE-LKQG-----------SGHIVSITTSLVDQ---------PVGPSALASLTKGGLN 146 usage_00034.pdb 105 YTIPVMLAIG-----------HGSIINIASVQSYA---------ATKNAAAYVTSKHALL 144 usage_00061.pdb 120 KLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQ--FPVLAYRMSKAAIN 177 usage_00064.pdb 107 PFIEGMYERK-----------AGSIVAISSISGER---------GNVGQTNYSATKAGVI 146 usage_00065.pdb 99 AAMRTMIQQQ-----------GGSIVNVGSIVGLK---------GNSGQSVYSASKGGLV 138 usage_00067.pdb 107 GLENNLK--V-----------GASIVFNGSDQCFI---------AKPNSFAYTLSKGAIA 144 usage_00075.pdb 101 YAIDQMRSQG-----------GGVIVNCGSIHSHV---------GKSGVTAYAAAKGGVK 140 i K usage_00026.pdb 147 AVTRSLA-EFSRSGVRVNAVSPG 168 usage_00027.pdb 147 AVTRSLA-EFSRSGVRVNAVSPG 168 usage_00034.pdb 145 GLTRSVAIDYAPKIRCNAVCPG- 166 usage_00061.pdb 178 MFGRTLAVDLKDDNVLVVNFCPG 200 usage_00064.pdb 147 GMMKSLAREGARYGVRANAVAPG 169 usage_00065.pdb 139 GFSRALAKEVARKKIRVNVVAPG 161 usage_00067.pdb 145 Q-TKSLALDLAKYQIRVNTVCPG 166 usage_00075.pdb 141 LLTQTLAIDYGPQNIRVNAVCPG 163 lA p #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################