################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:51:22 2021 # Report_file: c_0610_70.html ################################################################################################ #==================================== # Aligned_structures: 17 # 1: usage_00001.pdb # 2: usage_00220.pdb # 3: usage_00221.pdb # 4: usage_00222.pdb # 5: usage_00223.pdb # 6: usage_00224.pdb # 7: usage_00225.pdb # 8: usage_00226.pdb # 9: usage_00227.pdb # 10: usage_00228.pdb # 11: usage_00254.pdb # 12: usage_00255.pdb # 13: usage_00402.pdb # 14: usage_00403.pdb # 15: usage_00572.pdb # 16: usage_00659.pdb # 17: usage_00660.pdb # # Length: 70 # Identity: 24/ 70 ( 34.3%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 54/ 70 ( 77.1%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 8/ 70 ( 11.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 DPKARLMQEEIFGPVVAFSKVS--SFDEALE-VANNTEYGLTGAVITKNRDHINRAKQEF 57 usage_00220.pdb 1 ---EPIMKEEIFGPVLSVYVYPDDKYKETLQLVDSTTSYGLTGAVFSQDKDVVQEATKVL 57 usage_00221.pdb 1 ---EPIMKEEIFGPVLSVYVYPDDKYKETLQLVDSTTSYGLTGAVFSQDKDVVQEATKVL 57 usage_00222.pdb 1 ---EPIMKEEIFGPVLSVYVYPDDKYKETLQLVDSTTSYGLTGAVFSQDKDVVQEATKVL 57 usage_00223.pdb 1 ---EPIMKEEIFGPVLSVYVYPDDKYKETLQLVDSTTSYGLTGAVFSQDKDVVQEATKVL 57 usage_00224.pdb 1 ---EPIMKEEIFGPVLSVYVYPDDKYKETLQLVDSTTSYGLTGAVFSQDKDVVQEATKVL 57 usage_00225.pdb 1 ---EPIMKEEIFGPVLSVYVYPDDKYKETLQLVDSTTSYGLTGAVFSQDKDVVQEATKVL 57 usage_00226.pdb 1 ---EPIMKEEIFGPVLSVYVYPDDKYKETLQLVDSTTSYGLTGAVFSQDKDVVQEATKVL 57 usage_00227.pdb 1 DPQEPIMKEEIFGPVLSVYVYPDDKYKETLQLVDSTTSYGLTGAVFSQDKDVVQEATKVL 60 usage_00228.pdb 1 DPQEPIMKEEIFGPVLTVYVYPDDKYRETLKLVDSTTSYGLTGAVFAQDKAIVQEATRML 60 usage_00254.pdb 1 DPQEPIMKEEIFGPVLTVYVYPDDKYRETLKLVDSTTSYGLTGAVFAQDKAIVQEATRML 60 usage_00255.pdb 1 DPQEPIMKEEIFGPVLTVYVYPDDKYRETLKLVDSTTSYGLTGAVFAQDKAIVQEATRML 60 usage_00402.pdb 1 ---EPIMKEEIFGPVLSVYVYPDDKYKETLQLVDSTTSYGLTGAVFSQDKDVVQEATKVL 57 usage_00403.pdb 1 ---EPIMKEEIFGPVLSVYVYPDDKYKETLQLVDSTTSYGLTGAVFSQDKDVVQEATKVL 57 usage_00572.pdb 1 DPQEPIMKEEIFGPVLTVYVYPDDKYRETLKLVDSTTSYGLTGAVFAQDKAIVQEATRML 60 usage_00659.pdb 1 DPQEPIMKEEIFGPVLTVYVYPDDKYRETLKLVDSTTSYGLTGAVFAQDKAIVQEATRML 60 usage_00660.pdb 1 DPQEPIMKEEIFGPVLTVYVYPDDKYRETLKLVDSTTSYGLTGAVFAQDKAIVQEATRML 60 epiMkEEIFGPVl vyvyp ky EtL VdstTsYGLTGAVf qdk vqeAt l usage_00001.pdb 58 -H-VGNLYFN 65 usage_00220.pdb 58 RNAAGNFYIN 67 usage_00221.pdb 58 RNAAGNFYIN 67 usage_00222.pdb 58 RNAAGNFYIN 67 usage_00223.pdb 58 RNAAGNFYIN 67 usage_00224.pdb 58 RNAAGNFYIN 67 usage_00225.pdb 58 RNAAGNFYIN 67 usage_00226.pdb 58 RNAAGNFYIN 67 usage_00227.pdb 61 RNAAGNFYIN 70 usage_00228.pdb 61 RNAAGNFYIN 70 usage_00254.pdb 61 RNAAGNFYIN 70 usage_00255.pdb 61 RNAAGNFYIN 70 usage_00402.pdb 58 RNAAGNFYIN 67 usage_00403.pdb 58 RNAAGNFYIN 67 usage_00572.pdb 61 RNAAGNFYIN 70 usage_00659.pdb 61 RNAAGNFYIN 70 usage_00660.pdb 61 RNAAGNFYIN 70 n aGNfYiN #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################