################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:01:15 2021 # Report_file: c_0514_44.html ################################################################################################ #==================================== # Aligned_structures: 13 # 1: usage_00033.pdb # 2: usage_00174.pdb # 3: usage_00175.pdb # 4: usage_00176.pdb # 5: usage_00177.pdb # 6: usage_00260.pdb # 7: usage_00281.pdb # 8: usage_00369.pdb # 9: usage_00400.pdb # 10: usage_00442.pdb # 11: usage_00550.pdb # 12: usage_00623.pdb # 13: usage_00640.pdb # # Length: 112 # Identity: 10/112 ( 8.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 19/112 ( 17.0%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 24/112 ( 21.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00033.pdb 1 FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYA----SE-NVNKLLVGNKSD 55 usage_00174.pdb 1 ----TTAYYRGA-GIILVYDITDERTFTNIKQWFKTVNEHA----ND-EAQLLLVGNKSD 50 usage_00175.pdb 1 ----TTAYYRGA-GIILVYDITDERTFTNIKQWFKTVNEHA----ND-EAQLLLVGNKSD 50 usage_00176.pdb 1 -RTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA----ND-EAQLLLVGNKSD 54 usage_00177.pdb 1 -RTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA----ND-EAQLLLVGNKSD 54 usage_00260.pdb 1 -GKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESET--QPLVALVGNKID 57 usage_00281.pdb 1 ---LTTAFFRDA-GFLL-FDLTSQQSFLNVRNW-SQLQANA----YCENPDIVLIGNKAD 50 usage_00369.pdb 1 -RSLTTAFFRDA-GFLL-FDLTSQQSFLNVRNW-SQLQANA----YCENPDIVLIGNKAD 52 usage_00400.pdb 1 YHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQA----SP-NIVIALAGNKAD 55 usage_00442.pdb 1 ---ITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNA----DS-NIVILLVGNKSD 52 usage_00550.pdb 1 -HTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHA----NE-DVERMLLGNKCD 54 usage_00623.pdb 1 ----TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA----DS-NIVIMLVGNKSD 51 usage_00640.pdb 1 ----TRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHS----NS-NMVIMLIGNKSD 51 r A g D t W L GNK D usage_00033.pdb 56 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG-- 105 usage_00174.pdb 51 --ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKID-- 98 usage_00175.pdb 51 --ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKID-- 98 usage_00176.pdb 55 M-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKID-- 103 usage_00177.pdb 55 M-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKID-- 103 usage_00260.pdb 58 LEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILG----- 104 usage_00281.pdb 51 LPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIK------ 96 usage_00369.pdb 53 LPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIKREK--- 101 usage_00400.pdb 56 LASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL------- 100 usage_00442.pdb 53 LKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQ-- 102 usage_00550.pdb 55 MDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKT--- 103 usage_00623.pdb 52 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK 103 usage_00640.pdb 52 LESRREVKKEEGEAFARE--LIFMETSAKTASNVEEAFINTAKEIY------ 95 r a e SA nv i #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################