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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Thu Jan 21 00:37:14 2021
# Report_file: c_0615_11.html
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#====================================
# Aligned_structures: 11
#   1: usage_00071.pdb
#   2: usage_00112.pdb
#   3: usage_00113.pdb
#   4: usage_00114.pdb
#   5: usage_00115.pdb
#   6: usage_00116.pdb
#   7: usage_00117.pdb
#   8: usage_00188.pdb
#   9: usage_00189.pdb
#  10: usage_00203.pdb
#  11: usage_00204.pdb
#
# Length:        128
# Identity:       54/128 ( 42.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     62/128 ( 48.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           40/128 ( 31.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00071.pdb         1  ---------------------AKPLLQAR-QGCLLTLTYQGSERVMPNYNVMGMAKASLE   38
usage_00112.pdb         1  ------------YSFIALAKAGREMMKGR-NGSLLTLSYLGAERTMPNYNVMGMAKASLE   47
usage_00113.pdb         1  REGFRIAHDISAYSFIALAKAGREMMKGR-NGSLLTLSYLGAERTMPNYNVMGMAKASLE   59
usage_00114.pdb         1  ------------YSFIALAKAGREMMKGR-NGSLLTLSYLGAERTMPNYNVMGMAKASLE   47
usage_00115.pdb         1  ------------YSFIALAKAGREMMKGR-NGSLLTLSYLGAERTMPNYNVMGMAKASLE   47
usage_00116.pdb         1  ------------YSFIALAKAGREMMKGR-NGSLLTLSYLGAERTMPNYNVMGMAKASLE   47
usage_00117.pdb         1  ------------YSFIALAKAGREMMKGR-NGSLLTLSYLGAERTMPNYNVMGMAKASLE   47
usage_00188.pdb         1  --------------FPALAKAALPML--SDDASLLTLSYLGAERAIPNYNTMGLAKAALE   44
usage_00189.pdb         1  -----------AYSFPALAKAALPML--SDDASLLTLSYLGAERAIPNYNTMGLAKAALE   47
usage_00203.pdb         1  ------------YSFIALAKAGREMMKGR-NGSLLTLSYLGAERTMPNYNVMGMAKASLE   47
usage_00204.pdb         1  ------------YSFIALAKAGREMMKGR-NGSLLTLSYLGAERTMPNYNVMGMAKASLE   47
                                                   m       sLLTLsYlGaER  PNYN MG AKA LE

usage_00071.pdb        39  AGVRYLASSLGVDGIRVNAISAGPIRT-LAASGIKSFRKMLDANEKVAPLKRNVTIEEVG   97
usage_00112.pdb        48  AGVRYLAGSLGAEGTRVNAVSAGPI---------------LAANERQTPLRRNVTIEEVG   92
usage_00113.pdb        60  AGVRYLAGSLGAEGTRVNAVSAGPI-------------M-LAANERQTPLRRNVTIEEVG  105
usage_00114.pdb        48  AGVRYLAGSLGAEGTRVNAVSAGPI---------------LAANERQTPLRRNVTIEEVG   92
usage_00115.pdb        48  AGVRYLAGSLGAEGTRVNAVSAGPIR-----------RKMLAANERQTPLRRNVTIEEVG   96
usage_00116.pdb        48  AGVRYLAGSLGAEGTRVNAVSAGPI---------------LAANERQTPLRRNVTIEEVG   92
usage_00117.pdb        48  AGVRYLAGSLGAEGTRVNAVSAGPIR-------------MLAANERQTPLRRNVTIEEVG   94
usage_00188.pdb        45  ASVRYLAVSLGAKGVRVNAISAGPIKTL----GIKSFGKILDFVESNSPLKRNVTIEQVG  100
usage_00189.pdb        48  ASVRYLAVSLGAKGVRVNAISAGPIKT------IKSFGKILDFVESNSPLKRNVTIEQVG  101
usage_00203.pdb        48  AGVRYLAGSLGAEGTRVNAVSAGPIRT-LAASGIKSFRKMLAANERQTPLRRNVTIEEVG  106
usage_00204.pdb        48  AGVRYLAGSLGAEGTRVNAVSAGPIRT-LAASGIKSFRKMLAANERQTPLRRNVTIEEVG  106
                           A VRYLA SLGa G RVNA SAGPI               L   E   PL RNVTIE VG

usage_00071.pdb        98  NAALFLC-  104
usage_00112.pdb        93  NAGAFLC-   99
usage_00113.pdb       106  NAGAFLCS  113
usage_00114.pdb        93  NAGAFLCS  100
usage_00115.pdb        97  NAGAFLCS  104
usage_00116.pdb        93  NAGAFLCS  100
usage_00117.pdb        95  NAGAFLCS  102
usage_00188.pdb       101  NAGAFLLS  108
usage_00189.pdb       102  NAGAFLLS  109
usage_00203.pdb       107  NAGAFLCS  114
usage_00204.pdb       107  NAGAFLCS  114
                           NAgaFL  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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