################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 22:59:56 2021 # Report_file: c_1260_134.html ################################################################################################ #==================================== # Aligned_structures: 4 # 1: usage_00065.pdb # 2: usage_00202.pdb # 3: usage_00203.pdb # 4: usage_00259.pdb # # Length: 55 # Identity: 8/ 55 ( 14.5%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 16/ 55 ( 29.1%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 13/ 55 ( 23.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00065.pdb 1 EECVIMGGAVDVRGNVFLPSTDGTAEWNIYWDPASAKTVFGCPGLR--RIMF-S- 51 usage_00202.pdb 1 -GIVIMNGTSE---S-KGNSN-MAAEFNSHCDPEAGVVVLQHKGWKCPVQLVNW- 48 usage_00203.pdb 1 -GIVIMNGTSE---S-KGNSN-MAAEFNSHCDPEAGVVVLQHKGWKCPVQLVNW- 48 usage_00259.pdb 1 KKVWVMGGAVF---G-IGNIT-PVAEFNIWVDPDAAKIVFNAGFD-----ITMIP 45 viM G gns AEfN DP a V g #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################