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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Wed Jan 20 23:18:13 2021
# Report_file: c_1138_23.html
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#====================================
# Aligned_structures: 5
#   1: usage_00296.pdb
#   2: usage_00297.pdb
#   3: usage_00298.pdb
#   4: usage_00299.pdb
#   5: usage_00664.pdb
#
# Length:        154
# Identity:       30/154 ( 19.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    111/154 ( 72.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           43/154 ( 27.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00296.pdb         1  --VKRIFYFNFFVYCLYMIIFTAAAYYRPVEG---------------------LPPYKLK   37
usage_00297.pdb         1  --VKRIFYFNFFVYCLYMIIFTAAAYYRPVEG---------------------LPPYKLK   37
usage_00298.pdb         1  --VKRIFYFNFFVYCLYMIIFTAAAYYRPVEG---------------------LPPYKLK   37
usage_00299.pdb         1  --VKRIFYFNFFVYCLYMIIFTAAAYYRPVEG---------------------LPPYKLK   37
usage_00664.pdb         1  RYGRPYFCVLGAIYVLYIICFTMCCVYRPLK-PRITNRTNPRDNTLLQQKLLQEAY----   55
                             vkriFyfnffvYcLYmIiFTaaayYRPve                      lpp    

usage_00296.pdb        38  NTV-GDYFRVTGEILSVSGGVYFFFRGIQYFLQRRPSVD-----SYSEILFFVQSLFMLV   91
usage_00297.pdb        38  NTV-GDYFRVTGEILSVSGGVYFFFRGIQYFLQRRPSVD-----SYSEILFFVQSLFMLV   91
usage_00298.pdb        38  NTV-GDYFRVTGEILSVSGGVYFFFRGIQYFLQRRPSVD-----SYSEILFFVQSLFMLV   91
usage_00299.pdb        38  NTV-GDYFRVTGEILSVSGGVYFFFRGIQYFLQRRPSVD-----SYSEILFFVQSLFMLV   91
usage_00664.pdb        56  -VTPKDDLRLVGELVSIVGAVIILLVEIPDIFR------QTILGGPFHVIIVTYAFMVLV  108
                            tv gDyfRvtGEilSvsGgVyfffrgIqyflq           syseilffvqslfmLV

usage_00296.pdb        92  SVVLYFSQRKEYVASMVFSLAMGWTNMLYYTR--  123
usage_00297.pdb        92  SVVLYFSQRKEYVASMVFSLAMGWTNMLYYTR--  123
usage_00298.pdb        92  SVVLYFSQRKEYVASMVFSLAMGWTNMLYYTR--  123
usage_00299.pdb        92  SVVLYFSQRKEYVASMVFSLAMGWTNMLYYTR--  123
usage_00664.pdb       109  TMVMRLTNSDGEVVPMSFALVLGWCNVMYFARGF  142
                           svVlyfsqrkeyVasMvFsLamGWtNmlYytR  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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