################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:03:20 2021 # Report_file: c_1108_21.html ################################################################################################ #==================================== # Aligned_structures: 13 # 1: usage_00033.pdb # 2: usage_00144.pdb # 3: usage_00145.pdb # 4: usage_00154.pdb # 5: usage_00155.pdb # 6: usage_00187.pdb # 7: usage_00258.pdb # 8: usage_00283.pdb # 9: usage_00319.pdb # 10: usage_00330.pdb # 11: usage_00350.pdb # 12: usage_00400.pdb # 13: usage_00425.pdb # # Length: 96 # Identity: 11/ 96 ( 11.5%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 14/ 96 ( 14.6%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 48/ 96 ( 50.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00033.pdb 1 -----SCDMWSLGVIMYILLCGYPPFYS------------------GQYEF-PNPEWSEV 36 usage_00144.pdb 1 --------VWSLGVILYTLVSGSLPFD-G-LRERV-----------LRGKYRI---PFYM 36 usage_00145.pdb 1 ----PEVDVWSLGVILYTLVSGSLPFD------------------------RI---PFYM 29 usage_00154.pdb 1 TFYDKRCDLWSLGVVLYIMLSGYPPF--------------------GKYEF-PDKDWAHI 39 usage_00155.pdb 1 TFYDKRCDLWSLGVVLYIMLSGYPPF------------------------------WAHI 30 usage_00187.pdb 1 -----SCDMWSLGVIMYILLCGYPPFY--------------------------------- 22 usage_00258.pdb 1 EKYDKSCDMWSLGVIMYILLCGYPPFY-S------PGMKTRI-R-MGQYEF-PNPEWSEV 50 usage_00283.pdb 1 -KYDKSCDMWSLGVIMYILLCGYPPFY-S------PGMKTRI-R-MGQYEF-PNPEWSEV 49 usage_00319.pdb 1 -------DVWSLGCMFYTLLIGRPPFD-T----------DTV-KV-VLADYEM---PSFL 37 usage_00330.pdb 1 EKYDKSCDMWSLGVIMYILLCGYPPFY-S-----------NHGR-MGQYEF-PNPEWSEV 46 usage_00350.pdb 1 ----RSAAVWSLGILLYDMVCGDIPFE-HD--EEI-----------IRGQVFF---RQRV 39 usage_00400.pdb 1 -----SCDMWSLGVIMYILLCGYPPFYS------------------GQYEF-PNPEWSEV 36 usage_00425.pdb 1 -KYDKKCDIWSSGVIMYTLLCGYPPFY---------------------CF--YENDWGSI 36 WSlG Y G PF usage_00033.pdb 37 SEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQ--- 69 usage_00144.pdb 37 STDCENLLKKLLVLNP--RGSLEQIMKDRWMNV--- 67 usage_00145.pdb 30 STDCENLLKKLLVLNPIKRGSLEQIMKDRWMNV--- 62 usage_00154.pdb 40 SSEAKDLISKLLVRDAKQRLSAAQVLQHPWVQ---- 71 usage_00155.pdb 31 SSEAKDLISKLLVRDAKQRLSAAQVLQHPWVQ---- 62 usage_00187.pdb 23 SEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQ--- 55 usage_00258.pdb 51 SEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQ--- 83 usage_00283.pdb 50 SEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQ--- 82 usage_00319.pdb 38 SIEAKDLIHQLLRRNPADRLSLSSVLDHPFMS---- 69 usage_00330.pdb 47 SEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQ--- 79 usage_00350.pdb 40 SSECQHLIRWCLALRPSDRPTFEEIQNHPWMQ---- 71 usage_00400.pdb 37 SEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQ--- 69 usage_00425.pdb 37 SSDAKNLITKLLTYNPNERCTIEEALNHPWITQMTK 72 S L lL R w #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################