################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:56:48 2021 # Report_file: c_0210_5.html ################################################################################################ #==================================== # Aligned_structures: 13 # 1: usage_00006.pdb # 2: usage_00007.pdb # 3: usage_00009.pdb # 4: usage_00012.pdb # 5: usage_00020.pdb # 6: usage_00021.pdb # 7: usage_00022.pdb # 8: usage_00027.pdb # 9: usage_00028.pdb # 10: usage_00029.pdb # 11: usage_00036.pdb # 12: usage_00037.pdb # 13: usage_00038.pdb # # Length: 115 # Identity: 27/115 ( 23.5%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 33/115 ( 28.7%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 13/115 ( 11.3%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00006.pdb 1 -IVLTQSPATLSLSPGERATLSCGASQS-VS-S----N--YLAWYQQKPGQAPRLLIYDA 51 usage_00007.pdb 1 --VLTQSPATLSLSPGERATLSCGASQS-VS-S----N--YLAWYQQKPGQAPRLLIYDA 50 usage_00009.pdb 1 DIQMTQSPSSLSASVGDRVTITCRASQD-VS------T--AVAWYQQKPGKAPKLLIYSA 51 usage_00012.pdb 1 -IVLTQSHKFMSTSVGDRVSITCKASQD-VG------T--AVAWYQQKPGQSPKLLIYWA 50 usage_00020.pdb 1 DIVMTQSPDSLAVSLGERATINCKSSQS-VLYSSNSKN--YLAWYQQKPGQPPKLLIYWA 57 usage_00021.pdb 1 DIVLTQSPATLSLSPGERATLSCRASQS-VS-S----S--YLAWYQQKPGQAPRLLIYGA 52 usage_00022.pdb 1 -IVLTQSPATLSLSPGERATLSCRASQS-VS-S----S--YLAWYQQKPGQAPRLLIYGA 51 usage_00027.pdb 1 ALQLTQSPSSLSASVGDRITITCRASQG-VT------S--ALAWYRQKPGSPPQLLIYDA 51 usage_00028.pdb 1 -IQMTQSPSSLSASVGDRVTITCRASQS-VS------S--AVAWYQQKPGKAPKLLIYSA 50 usage_00029.pdb 1 DIQMTQSPSSLSASVGDRVTITCRASQS-VS------S--AVAWYQQKPGKAPKLLIYSA 51 usage_00036.pdb 1 -TTLTQSPGTLSLSPGERATLSCRASQT-IS-N----N--FVAWYQQKPGQAPRLLIYGA 51 usage_00037.pdb 1 QA-VVTQESALTSSPGETVTLTCRSSTGAVT------TSNYANWVQEKPDHLFTGVIGGT 53 usage_00038.pdb 1 QA-VVTQESALTSSPGETVTLTCRSSTGAVT------TSNYANWVQEKPDHLFTGVIGGT 53 l S G t C S v W q KP I usage_00006.pdb 52 SSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSPLTFGGGTKVEI 106 usage_00007.pdb 51 SSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSPLTFGGGTKVE- 104 usage_00009.pdb 52 SFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEI 106 usage_00012.pdb 51 STRHTGVPDRFTGSGSGTDFTLTISNVQSEDLADYFCQQYSSYPLTFGAGTKLE- 104 usage_00020.pdb 58 STRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTPYSFGQGTKLEI 112 usage_00021.pdb 53 SSRATGVPARFSGSGSGTDFTLTISSLEPEDFATYYCLQIYNMPITFGQGTKVEI 107 usage_00022.pdb 52 SSRATGVPARFSGSGSGTDFTLTISSLEPEDFATYYCLQIYNMPITFGQGTKVEI 106 usage_00027.pdb 52 SSLESGVPSRFSGSGSGTEFTLTISTLRPEDFATYYCQQLHFYPHTFGGGTRVDV 106 usage_00028.pdb 51 SSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSQWYPITFGQGTKVEI 105 usage_00029.pdb 52 SSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSQWYPITFGQGTKVEI 106 usage_00036.pdb 52 STRATGIPDRFSGSGSGTDFTLTISSLEPEDFAVYYCQQYGSSPYTFGQGTKVDI 106 usage_00037.pdb 54 NNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYFCALWYSNHWVFGGGTKLT- 107 usage_00038.pdb 54 NNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYFCALWYSNHWVFGGGTKLT- 107 G P RFsGS G LTI ED A Y C FG GTk #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################