################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:01:47 2021 # Report_file: c_1484_341.html ################################################################################################ #==================================== # Aligned_structures: 5 # 1: usage_00778.pdb # 2: usage_03263.pdb # 3: usage_04413.pdb # 4: usage_04576.pdb # 5: usage_04613.pdb # # Length: 65 # Identity: 5/ 65 ( 7.7%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 15/ 65 ( 23.1%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 13/ 65 ( 20.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00778.pdb 1 ---HDAAIQNILTELQNH------A-AAWPFLQPVNKE--EVPDYYDFIKEPMDLSTMEI 48 usage_03263.pdb 1 --PMQQKLNEVYEAVKNYTDKRGRR-LSAIFLRLPSRS--ELPDYYLTIKKPMDMEKIRS 55 usage_04413.pdb 1 --SMNDQIWQLLDTLSRH------E-NAWPFRKPVSIG--EASDYYEIIKEPTDIQTMKR 49 usage_04576.pdb 1 PEELRQALMPTLEALYRQ------DPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKR 54 usage_04613.pdb 1 ---DLALCSMILTEMETH------E-DAWPFLLPVNLK--LVPGYKKVIKKPMDFSTIRE 48 l pF pv pdY iK PmD t usage_00778.pdb 49 KLESN 53 usage_03263.pdb 56 HMMA- 59 usage_04413.pdb 50 KAKNK 54 usage_04576.pdb 55 KLDTG 59 usage_04613.pdb 49 KLSSG 53 k #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################