################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:35:52 2021 # Report_file: c_0313_6.html ################################################################################################ #==================================== # Aligned_structures: 7 # 1: usage_00004.pdb # 2: usage_00006.pdb # 3: usage_00019.pdb # 4: usage_00020.pdb # 5: usage_00034.pdb # 6: usage_00035.pdb # 7: usage_00036.pdb # # Length: 176 # Identity: 20/176 ( 11.4%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 66/176 ( 37.5%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 22/176 ( 12.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00004.pdb 1 --GLDSTRLQSELAKHFGIKQSLVTNTRTYGGHGEQMAVFASTAKVNGTPLTDLIGTDKL 58 usage_00006.pdb 1 -GVLDTARFRTFIAQELNLSVKDIT-GFVLGGHGDDMVPLVRYSYAGGIPLETL-----I 53 usage_00019.pdb 1 AGVLDSSRFRTFIAQHFGVNASDVS-ANVIGGHGDGMVPATSSVSVGGVPLSSFIKQGLI 59 usage_00020.pdb 1 AGVLDSSRFRTFIAQHFGVNASDVS-ANVIGGHGDGMVPATSSVSVGGVPLSSFIKQGLI 59 usage_00034.pdb 1 ---LDSSRFRYFLAEKLNVSPNDVQ-AMVIGGHGDTMVPLTRYCTVGGIPLTEFIKQGWI 56 usage_00035.pdb 1 AGVLDSSRFRYFLAEKLNVSPNDVQ-AMVIGGHGDTMVPLTRYCTVGGIPLTEFIKQGWI 59 usage_00036.pdb 1 ---LDSSRFRYFLAEKLNVSPNDVQ-AMVIGGHGDTMVPLTRYCTVGGIPLTEFIKQGWI 56 LDs Rfr f A dv v GGHGd Mvp vgG PL i usage_00004.pdb 59 TNEQWAELKQRVVKGGANIIKLRGR-SSFQSPSYVSIEMIRAAMGGEAFRWPAGCYVNV- 116 usage_00006.pdb 54 PKERLEAIVERTRKGGGEIVGLLGNGSAYYAPAASLVEMTEAILKDQRRVLPAIAYLEGE 113 usage_00019.pdb 60 TQEQIDEIVCHTRIAWKEVADNLKTGTAYFAPAAAAVKMAEAYLKDKKAVVPCSAFCSNH 119 usage_00020.pdb 60 TQEQIDEIVCHTRIAWKEVADNLKTGTAYFAPAAAAVKMAEAYLKDKKAVVPCSAFCSNH 119 usage_00034.pdb 57 TQEEIDEIVERTRNAGGEIVNLLKTGSAYFAPAASAIEMAESYLKDKKRILPCSAYLEGQ 116 usage_00035.pdb 60 TQEEIDEIVERTRNAGGEIVNLLKTGSAYFAPAASAIEMAESYLKDKKRILPCSAYLEGQ 119 usage_00036.pdb 57 TQEEIDEIVERTRNAGGEIVNLLKTGSAYFAPAASAIEMAESYLKDKKRILPCSAYLEGQ 116 t E eiv tr e l ay aPaa M e lkd P a usage_00004.pdb 117 PGFEHIMMAMETTITKDGVKH-SDINQLGNEAERAALKESYSHLAKLRDEVIAM-- 169 usage_00006.pdb 114 YGYSDLYLGVPVILGGNGIEKIIEL--ELLADEKEALDRSVESVRNVMK------- 160 usage_00019.pdb 120 YGVKGIYMGVPTIIGKNGVEDILEL--DLTPLEQKLLGESINEVNTISKVL----- 168 usage_00020.pdb 120 YGVKGIYMGVPTIIGKNGVEDILEL--DLTPLEQKLLGESINEVNTIS-------- 165 usage_00034.pdb 117 YGVKDLFVGVPVIIGKNGVEKIIEL--ELTEEEQEMFDKSVESVRELVETVKKLNA 170 usage_00035.pdb 120 YGVKDLFVGVPVIIGKNGVEKIIEL--ELTEEEQEMFDKSVESVRELVETVKK--- 170 usage_00036.pdb 117 YGVKDLFVGVPVIIGKNGVEKIIEL--ELTEEEQEMFDKSVESVRELVETVKKLN- 169 yG gvp iigknGve el l E S v #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################