################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Fri Jan 22 10:40:36 2021 # Report_file: c_0875_107.html ################################################################################################ #==================================== # Aligned_structures: 10 # 1: usage_00129.pdb # 2: usage_00303.pdb # 3: usage_00700.pdb # 4: usage_00701.pdb # 5: usage_00702.pdb # 6: usage_00703.pdb # 7: usage_00704.pdb # 8: usage_01006.pdb # 9: usage_01007.pdb # 10: usage_01008.pdb # # Length: 118 # Identity: 3/118 ( 2.5%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 20/118 ( 16.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 51/118 ( 43.2%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00129.pdb 1 -------------------VFYSNISACYISTGDLEKVIEFTTKALEIKPD----HSKAL 37 usage_00303.pdb 1 -----------------KLNKLIESAEELIRDGRYTDATSKYESVK-TEPSVAEYTVRSK 42 usage_00700.pdb 1 AEEAIKYMRKAVSLDPNNIKTLSNLANLLAQEGKAEEAIKYMRKAVSLDPN----NIKTL 56 usage_00701.pdb 1 -----------------SIKTLSNLANLLAQEGKAEEAIKYMRKAVSLDPN----NIKTL 39 usage_00702.pdb 1 AEEAIKYMRKAVSLDPNNIKTLSNLANLLAQEGKAEEAIKYMRKAVSLDPN----NIKTL 56 usage_00703.pdb 1 -----------------SIKTLSNLANLLAQEGKAEEAIKYMRKAVSLDPN----NIKTL 39 usage_00704.pdb 1 --N--------------SIKTLSNLANLLAQEGKAEEAIKYMRKAVSLDPN----NIKTL 40 usage_01006.pdb 1 AEEAIKYMRKAVSLDPNNIKTLSNLANLLAQEGKAEEAIKYMRKAVSLDPN----NIKTL 56 usage_01007.pdb 1 ------------------IKTLSNLANLLAQEGKAEEAIKYMRKAVSLDPN----NIKTL 38 usage_01008.pdb 1 -----------------SIKTLSNLANLLAQEGKAEEAIKYMRKAVSLDPN----NIKTL 39 lsn a l G e ai ka P k l usage_00129.pdb 38 LRRASANESLGNFTDAMFDLSVLSPMLERNLNKQAMK--------------VLNEN-- 79 usage_00303.pdb 43 ERICHCFSKDEKPVEAIRICSEVL-----------QE-PDNVNALKDRAEAYLIEE-- 86 usage_00700.pdb 57 SNLAVLLAQEGKAEEAIKYMRKAV-----------SL--------------IDKAAKG 89 usage_00701.pdb 40 SNLANLLAQEGKAEEAIKYMRKAV-----------SLDPNNIKTLSNLAVLLAQEG-- 84 usage_00702.pdb 57 SNLAVLLAQEGKAEEAIKYMRKAV-----------SL--------------IDKAA-- 87 usage_00703.pdb 40 SNLANLLAQEGKAEEAIKYMRKAV-----------SLDPNNIKTLSNLAVLLAQEG-- 84 usage_00704.pdb 41 SNLANLLAQEGKAEEAIKYMRKAV-----------SLDPNNIKTLSNLAVLLAQEG-- 85 usage_01006.pdb 57 SNLAVLLAQEGKAEEAIKYMRKAV-----------SL--------------IDKAAK- 88 usage_01007.pdb 39 SNLANLLAQEGKAEEAIKYMRKAV-----------SLDPNNIKTLSNLAVLLAQEG-- 83 usage_01008.pdb 40 SNLANLLAQEGKAEEAIKYMRKAV-----------SLDPNNIKTLSNLAVLLAQEG-- 84 a gk eAi #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################