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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Wed Jan 20 23:04:32 2021
# Report_file: c_0270_29.html
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#====================================
# Aligned_structures: 4
#   1: usage_00261.pdb
#   2: usage_00264.pdb
#   3: usage_00266.pdb
#   4: usage_00269.pdb
#
# Length:        221
# Identity:      117/221 ( 52.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    119/221 ( 53.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          102/221 ( 46.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00261.pdb         1  ---------------------------TVFLDRLAVIFRHTNPIVHPCQKVIQEIWPVLS   33
usage_00264.pdb         1  PLDKITECLSELCSVQVM--ALKKLDPTVFLDRLAVIFRHTNPIVHPCQKVIQEIWPVLS   58
usage_00266.pdb         1  PLDKITECLSELCSVQVM--ALKKLDPTVFLDRLAVIFRHTNPIVHPCQKVIQEIWPVLS   58
usage_00269.pdb         1  --------LSELCSVQVALK----KDPTVFLDRLAVIFRH---------------WPVLS   33
                                                      TVFLDRLAVIFRH               WPVLS

usage_00261.pdb        34  ETLNKHRADNRIVERCCRCLRFAVRCVGKGSAALLQPLVTQMVNVYHVHQHSCFLYLGSI   93
usage_00264.pdb        59  ETLNKHRADNRIVERCCRCLRFAVRCVGKGSAALLQPLVTQMVNVYHVHQHSCFLYLGSI  118
usage_00266.pdb        59  ETLNKHRADNRIVERCCRCLRFAVRCVGKGSAALLQPLVTQMVNVYHVHQHSCFLYLGSI  118
usage_00269.pdb        34  ETLNKHRADNRIVERCCRCLRFAVR-----------PLVT-QVNVYHVHQHSCFLYLGS-   80
                           ETLNKHRADNRIVERCCRCLRFAVR           PLVT mVNVYHVHQHSCFLYLGS 

usage_00261.pdb        94  LVDEYGMEEGCRQGLLD-MLQALCIPTFQLLEQQNGLQNHPDTVDDLFRLATRFIQRSPV  152
usage_00264.pdb       119  LVDEYGMEEGCRQGLLD-MLQALCIPTFQLLEQQNGLQNHPDTVDDLFRLATRFIQRSPV  177
usage_00266.pdb       119  LVDEYGMEEGCRQGLLD-MLQALCIPTFQLLEQQNGLQNHPDTVDDLFRLATRFIQRSPV  177
usage_00269.pdb        81  -----------------LDLQALCIPTFQLLEQQNGLQNHPDTVDDLFRLATRFIQRSP-  122
                                             mLQALCIPTFQLLEQQNGLQNHPDTVDDLFRLATRFIQRSP 

usage_00261.pdb       153  TLLRSQ-VVIPILQWAIASTTLDHRDANCSVMRFLRDLIHT  192
usage_00264.pdb       178  TLLRSQ-VVIPILQWAIAST---------------------  196
usage_00266.pdb       178  TLLRSQ-VVIPILQWAIAST---------------------  196
usage_00269.pdb       123  ------VVVIPILQWAIAST---------------------  136
                                  VVIPILQWAIAST                     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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