################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:45:25 2021 # Report_file: c_0149_3.html ################################################################################################ #==================================== # Aligned_structures: 17 # 1: usage_00002.pdb # 2: usage_00004.pdb # 3: usage_00005.pdb # 4: usage_00014.pdb # 5: usage_00017.pdb # 6: usage_00023.pdb # 7: usage_00026.pdb # 8: usage_00027.pdb # 9: usage_00028.pdb # 10: usage_00029.pdb # 11: usage_00037.pdb # 12: usage_00040.pdb # 13: usage_00041.pdb # 14: usage_00042.pdb # 15: usage_00043.pdb # 16: usage_00046.pdb # 17: usage_00048.pdb # # Length: 113 # Identity: 25/113 ( 22.1%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 42/113 ( 37.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 12/113 ( 10.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00002.pdb 1 QIQLTQSPSSLSASVGDRVTITCSASSQVN-----HMFWYQQKPGKAPKPWIYLTSYLAS 55 usage_00004.pdb 1 -IVMTQTPAIMSAFLGERVTMTCTATSSLS-S--SYLHWYQQKPGSSPKLWIYTTSNLAS 56 usage_00005.pdb 1 DIVMTQTPAIMSAFLGERVTMTCTATSSLS-S--SYLHWYQQKPGSSPKLWIYTTSNLAS 57 usage_00014.pdb 1 --VLTQSPGSLAVSLGQRATISCRASESVDDDGNSFLHWYQQKPGQPPKLLIYRSSNLIS 58 usage_00017.pdb 1 ---MTQTTSSLSASLGDRVTISCRASQDIS----NFLNWYQQKPDGTVKLLIYYTSTLHS 53 usage_00023.pdb 1 ---LTQSPAIMSASPGETVTMTCRATSSVS-S--TYLHWYQQKSGASPKLWIYSTSNLAS 54 usage_00026.pdb 1 EIVLTQSPGTLSLSPGERATLSCRASQGIS-R--SYLAWYQQKPGQAPSLLIYGASSRAT 57 usage_00027.pdb 1 -LVMTQTPAIMSASPGEKVTMTCSASSSVS-----SVHWYQQKSGTSPKRWIYDTSKLPS 54 usage_00028.pdb 1 -LVMTQTPAIMSASPGEKVTMTCSASSSVS-----SVHWYQQKSGTSPKRWIYDTSKLPS 54 usage_00029.pdb 1 --VLTQSPGIMSASPGEKVTITCSASSSVS-----YMYWFQQKPGTSPKLWIYSTSNLAS 53 usage_00037.pdb 1 -IQMTQSPSSLSASVGDRVTITCRASQSVS----SAVAWYQQKPGKAPKLLIYSASSLYS 55 usage_00040.pdb 1 QIVLTQSPAIMSASPGEKVTMTCSASSSVS-----YMHWYQQKSGTSPKRWIYDSSRLAS 55 usage_00041.pdb 1 -IQMTQSPSSLSASVGDRITITCRASQAFD----NYVAWYQQRPGKVPKLLISAASALHA 55 usage_00042.pdb 1 --VLTQSPDFQSVTPKEKVTITCRASQSIS----DHLHWYQQKPDQSPKLLIKYASHAIS 54 usage_00043.pdb 1 -IVLTQSPDFQSVTPKEKVTITCRASQSIS----DHLHWYQQKPDQSPKLLIKYASHAIS 55 usage_00046.pdb 1 DIELTQSPAIMSASPGEKVTMTCRASSTVS-F--HYLHWYQQKSGASPKLWIYATSNLAS 57 usage_00048.pdb 1 DIVLTQSPSSLSASLGDTITITCHASQNIN----LWLSWYQQRPGNIPKLLIYRASNLHT 56 TQ p s T C A WyQQ pk I S usage_00002.pdb 56 GVPSRFSGSGSGTDYTLTISSLQPEDFATYYCQQWSGNPWTFGQGTKVEI--- 105 usage_00004.pdb 57 GVPSRFSGSGSGTSYSLTISSMEAEDAATYYCHQFHHSPYTFGGGTKLEI--- 106 usage_00005.pdb 58 GVPSRFSGSGSGTSYSLTISSMEAEDAATYYCHQFHHSPYTFGGGTKLEI--- 107 usage_00014.pdb 59 GIPDRFSGSGSRTDFTLTINPVEADDVATYYCQQSNEDPLTFGAGTKLEI--- 108 usage_00017.pdb 54 GVPSRFSGSGSGTDYSLTISNLEQEDIATYFCQQGKTLPPTFGGGTKLEIKRA 106 usage_00023.pdb 55 GVPARFSGSGSGTSYSLTISSVEAEDAATYYCQQYINYPLTFGGGTKLELKRA 107 usage_00026.pdb 58 GIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQFGSSPWTFGQGTKVEI--- 107 usage_00027.pdb 55 GVPGRFSGSGSGTSYSLTISSMEAEDAATYYCQQWSSNPPTFGAGTKLEVKRA 107 usage_00028.pdb 55 GVPGRFSGSGSGTSYSLTISSMEAEDAATYYCQQWSSNPPTFGAGTKLEV--- 104 usage_00029.pdb 54 GVPARFRGSGSGTSYSLTISRMEAEDAATYYCQQRSGYPRTFGGGTKLEI--- 103 usage_00037.pdb 56 GVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYSYPYTFGQGTKVEIKRT 108 usage_00040.pdb 56 GVPSRFSGGGSGTSYSLTISNMEAEDAATYFCQNWRSSPTFGAGTKL-EL--- 104 usage_00041.pdb 56 GVPSRFSGSGSGTHFTLTISSLQPEDVATYYCQNYNSAPLTFGGGTKVEI--- 105 usage_00042.pdb 55 GVPSRFSGSGSGTDFTLTINSLEAEDAATYYCQQGHSFPLTFGGGTKVEIKRT 107 usage_00043.pdb 56 GVPSRFSGSGSGTDFTLTINSLEAEDAATYYCQQGHSFPLTFGGGTKVEIKRT 108 usage_00046.pdb 58 GVPARFSGSGSGTSYSLTISSVETEDAATYYCQHYSAYPRTFGGGTKLEIKRA 110 usage_00048.pdb 57 GVPSRFSGSGSATGFTLTISSLQPEDIATYYCQQGHSYPYTFGGGTKLDI--- 106 G P RFsGsgS T LTI eD AtY C P tfg gtk e #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################