################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 02:03:56 2021 # Report_file: c_0728_21.html ################################################################################################ #==================================== # Aligned_structures: 18 # 1: usage_00022.pdb # 2: usage_00043.pdb # 3: usage_00056.pdb # 4: usage_00057.pdb # 5: usage_00060.pdb # 6: usage_00085.pdb # 7: usage_00114.pdb # 8: usage_00117.pdb # 9: usage_00147.pdb # 10: usage_00148.pdb # 11: usage_00156.pdb # 12: usage_00243.pdb # 13: usage_00244.pdb # 14: usage_00245.pdb # 15: usage_00246.pdb # 16: usage_00247.pdb # 17: usage_00294.pdb # 18: usage_00301.pdb # # Length: 71 # Identity: 5/ 71 ( 7.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 36/ 71 ( 50.7%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 21/ 71 ( 29.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00022.pdb 1 RRGFFVTKKKYAVIDEEDKITTRGLEIVRRDWSE-IAKETQARVLEAILKHGDVEEAVRI 59 usage_00043.pdb 1 VRGFFVTKKKYAVIDEEGKITTRGLEIVRRDWSE-IAKETQARVLEAILKHGDVEEAVRI 59 usage_00056.pdb 1 VRGFFVTKKKYAVIDEEGKITTRGLEIVRRDWSE-IAKETQARVLEAILKHGDVEEAVRI 59 usage_00057.pdb 1 KRGFFVTKKKYAVIDEEGKITTRGLEIVRRDWSE-IAKETQARVLEALLKDGDVEKAVRI 59 usage_00060.pdb 1 KFVAFS---NYFGVYQDGKVDIKGMLV----VKK-VFNEVKELMISIN--SPNDVKEIKR 50 usage_00085.pdb 1 KRGFFVTKKKYAVIDEEDKITTRGLEIVRRDWSE-IAKETQARVLEAILKHGDVEEAVRI 59 usage_00114.pdb 1 KRGFFVTKKRYAVIDEEGKVITRGLE------SE-IAKETQARVLETILKHGDVEEAVRI 53 usage_00117.pdb 1 -RGFFVTKKKYAVIDEEGKITTRGLEIVRRDWSE-IAKETQARVLEALLKDGDVEKAVRI 58 usage_00147.pdb 1 KRGFFVTKKRYAVIDEEGKVITRGLE--------IIAKETQARVLETILKHGDVEEAVRI 52 usage_00148.pdb 1 KRGFFVTKKRYAVIDEEGKVITRGLEI---DWSE-IAKETQARVLETILKHGDVEEAVRI 56 usage_00156.pdb 1 KRGFFVTKKRYAVIDEEGKVITRGLEIVRRDWSE-IAKETQARVLETILKHGDVEEAVRI 59 usage_00243.pdb 1 ARGFFVTKKKYALIDEEGKIVTRGLEIVRRDWSE-IAKETQAKVLEAILKHGNVDEAVKI 59 usage_00244.pdb 1 ARGFFVTKKKYALIDEEGKIVTRGLEIVRRDWSE-IAKETQAKVLEAILKHGNVDEAVKI 59 usage_00245.pdb 1 ARGFFVTKKKYALIDEEGKIVTRGLEIVRRDWSE-IAKETQAKVLEAILKHGNVDEAVKI 59 usage_00246.pdb 1 ARGFFVTKKKYALIDEEGKIVTRGLEIVRRDWSE-IAKETQAKVLEAILKHGNVDEAVKI 59 usage_00247.pdb 1 ARGFFVTKKKYALIDEEGKIVTRGLEIVRRDWSE-IAKETQAKVLEAILKHGNVDEAVKI 59 usage_00294.pdb 1 RRGFFVTKKKYAVIDEEDKITTRGLEIVRRDWSE-IAKETQARVLEAILKHGDVEEAVRI 59 usage_00301.pdb 1 KRGFFVTKKKYAVIDEEDKITTRGLEIVRRDWSE-IAKETQARVLEAILKHGDVEEAVRI 59 rgfFv Ya idee K trGle iakEtqa vle g v av i usage_00022.pdb 60 VKEVTEKLSRH 70 usage_00043.pdb 60 VKEVT------ 64 usage_00056.pdb 60 VKEVTEKLSKY 70 usage_00057.pdb 60 VKEVTEKLSKY 70 usage_00060.pdb 51 KIVDVVKGS-Y 60 usage_00085.pdb 60 VKEVTEKLSKY 70 usage_00114.pdb 54 VKEVIQKLA-- 62 usage_00117.pdb 59 VKEVTEKLSKY 69 usage_00147.pdb 53 VKEVIQKLA-- 61 usage_00148.pdb 57 VKEVIQKLANY 67 usage_00156.pdb 60 VKEVIQKLANY 70 usage_00243.pdb 60 VKEVTEKLSKY 70 usage_00244.pdb 60 VKEVTEKLSKY 70 usage_00245.pdb 60 VKEVTEKLSKY 70 usage_00246.pdb 60 VKEVTEKLSKY 70 usage_00247.pdb 60 VKEVTEKLSKY 70 usage_00294.pdb 60 VKEVTEKLSRH 70 usage_00301.pdb 60 VKEVTEKLSKY 70 vkev #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################