################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:57:52 2021 # Report_file: c_0412_3.html ################################################################################################ #==================================== # Aligned_structures: 13 # 1: usage_00012.pdb # 2: usage_00018.pdb # 3: usage_00038.pdb # 4: usage_00081.pdb # 5: usage_00101.pdb # 6: usage_00102.pdb # 7: usage_00103.pdb # 8: usage_00133.pdb # 9: usage_00258.pdb # 10: usage_00320.pdb # 11: usage_00321.pdb # 12: usage_00506.pdb # 13: usage_00561.pdb # # Length: 84 # Identity: 6/ 84 ( 7.1%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 7/ 84 ( 8.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 22/ 84 ( 26.2%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00012.pdb 1 DSIAIGDITVTKQILAYVDNVRGPTAEQSPNADIFLDGLFGAAYPDNTAMEAEYGST-YN 59 usage_00018.pdb 1 DTVSVGGGSDPNQELGESQTEPGPFQAA---A--PFDGILGLAYPSIAAA------G-AV 48 usage_00038.pdb 1 DSVTIGDLVVKEQDFIEATDEADNVFLH---R--LFDGILGLSFQ--T--------I-SV 44 usage_00081.pdb 1 DTVTVSNIVDIQQTVGLSTQEPGDVFTY---A--EFDGILGMAYPSLASE------Y-SI 48 usage_00101.pdb 1 DTVQVGGISDTNQIFGLSETEPGSFLYY---A--PFDGILGLAYPSISAS------G-AT 48 usage_00102.pdb 1 DTVQVGGISDTNQIFGLSETEPGSFLYY---A--PFDGILGLAYPSISSS------G-AT 48 usage_00103.pdb 1 DTVQVGGISDTNQIFGLSETEPGSFLYY---A--PFDGILGLAYPSISSS------G-AT 48 usage_00133.pdb 1 DTVQVGGISDTNQIFGLSETEPGSFLYY---A--PFDGILGLAYPSISSS------G-AT 48 usage_00258.pdb 1 DNVNLGGLLIKGQTIELAKREAA-SFAS---G--PNDGLLGLGFDTITTV------RGVK 48 usage_00320.pdb 1 DSITVGGATVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAAYPDNTAMEAEYGDT-YN 59 usage_00321.pdb 1 DTVQVGGISDTNQIFGLSETEPGSFLYY---A--PFDGILGLAYPSISAS------G-AT 48 usage_00506.pdb 1 DKVTIGGFSVNTQGVESATRVSTEFVQD---T--VISGLVGLAFDSGNQV---RPHP-QK 51 usage_00561.pdb 1 DTVTVSNIVDIQQTVGLSTQEPGDVFTY---A--EFDGILGMAYPSLASE------Y-SI 48 D Q dG G usage_00012.pdb 60 TVHVNLYKQGLISSPLFSVYMNT- 82 usage_00018.pdb 49 PVFDNMGSQSLVEKDLFSFYLSG- 71 usage_00038.pdb 45 PVWYNMLNQGLVKERRFSFWLN-- 66 usage_00081.pdb 49 PVFDNMMNRHLVAQDLFSVYM--- 69 usage_00101.pdb 49 PVFDNLWDQGLVSQDLFSVYLSSN 72 usage_00102.pdb 49 PVFDNIWNQGLVSQDLFSVYLSAD 72 usage_00103.pdb 49 PVFDNIWNQGLVSQDLFSVYLSAD 72 usage_00133.pdb 49 PVFDNIWNQGLVSQDLFSVYLS-- 70 usage_00258.pdb 49 TPMDNLISQGLISRPIFGVYLGK- 71 usage_00320.pdb 60 TVHVNLYKQGLISSPVFSVYMNT- 82 usage_00321.pdb 49 PVFDNLWDQGLVSQDLFSVYLSSN 72 usage_00506.pdb 52 TWFSNAAS-S-LAEPLFTADLRH- 72 usage_00561.pdb 49 PVFDNMMNRHLVAQDLFSVYMD-- 70 N F #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################