################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:44:23 2021 # Report_file: c_0182_1.html ################################################################################################ #==================================== # Aligned_structures: 12 # 1: usage_00001.pdb # 2: usage_00002.pdb # 3: usage_00009.pdb # 4: usage_00010.pdb # 5: usage_00011.pdb # 6: usage_00023.pdb # 7: usage_00031.pdb # 8: usage_00032.pdb # 9: usage_00033.pdb # 10: usage_00034.pdb # 11: usage_00035.pdb # 12: usage_00036.pdb # # Length: 199 # Identity: 98/199 ( 49.2%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 98/199 ( 49.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 52/199 ( 26.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 -SRFVETLVVADDKMAAFHGAGLKRYLLTVMAAAAKAFKHPSIRNPVSLVVTRLVIL--- 56 usage_00002.pdb 1 -SRFVETLVVADDKMAAFHGAGLKRYLLTVMAAAAKAFKHPSIRNPVSLVVTRLVIL--- 56 usage_00009.pdb 1 -SRFVETLVVADDKMAAFHGAGLKRYLLTVMAAAAKAFKHPSIRNPVSLVVTRLVIL--- 56 usage_00010.pdb 1 -SRFVETLVVADDKMAAFHGAGLKRYLLTVMAAAAKAFKHPSIRNPVSLVVTRLVIL--- 56 usage_00011.pdb 1 -SRFVETLVVADDKMAAFHGAGLKRYLLTVMAAAAKAFKHPSIRNPVSLVVTRLVIL--- 56 usage_00023.pdb 1 ------TMLVADQSMAEFHGSGLKHYLLTLFSVAARLYKHPSIRNSVSLVVVKILVIHDE 54 usage_00031.pdb 1 -SRFVETLVVADDKMAAFHGAGLKRYLLTVMAAAAKAFKHPSIRNPVSLVVTRLVIL--- 56 usage_00032.pdb 1 LSRFVETLVVADDKMAAFHGAGLKRYLLTVMAAAAKAFKHPSIRNPVSLVVTRLVIL--- 57 usage_00033.pdb 1 --RFVETLVVADDKMAAFHGAGLKRYLLTVMAAAAKAFKHPSIRNPVSLVVTRLVIL--- 55 usage_00034.pdb 1 -SRFVETLVVADDKMAAFHGAGLKRYLLTVMAAAAKAFKHPSIRNPVSLVVTRLVILGSG 59 usage_00035.pdb 1 -SRFVETLVVADDKMAAFHGAGLKRYLLTVMAAAAKAFKHPSIRNPVSLVVTRLVILGSG 59 usage_00036.pdb 1 SHRYVETMLVADQSMAEFHGSGLKHYLLTLFSVAARLYKHPSIRNSVSLVVVKILVIHDE 60 T VAD MA FHG GLK YLLT AA KHPSIRN VSLVV usage_00001.pdb 57 --GPQVGPSAAQTLRSFCAWQRGLNTPEDSDPDHFDTAILFTRQDLCGVSTCDTLGMADV 114 usage_00002.pdb 57 --GPQVGPSAAQTLRSFCAWQRGLNTPEDSDPDHFDTAILFTRQDLCGVSTCDTLGMADV 114 usage_00009.pdb 57 -EGPQVGPSAAQTLRSFCAWQRGLNTPEDSDPDHFDTAILFTRQDLCGVSTCDTLGMADV 115 usage_00010.pdb 57 -EGPQVGPSAAQTLRSFCAWQRGLNTPEDSDPDHFDTAILFTRQDLCGVSTCDTLGMADV 115 usage_00011.pdb 57 --GPQVGPSAAQTLRSFCAWQRGLNTPEDSDPDHFDTAILFTRQDLCGVSTCDTLGMADV 114 usage_00023.pdb 55 QKGPEVTSNAALTLRNFCNWQKQHNPPSDRDAEHYDTAILFTRQDLCGSQTCDTLGMADV 114 usage_00031.pdb 57 --GPQVGPSAAQTLRSFCAWQRGLNTPEDSDPDHFDTAILFTRQDLCGVSTCDTLGMADV 114 usage_00032.pdb 58 --GPQVGPSAAQTLRSFCAWQRGLNTPEDSDPDHFDTAILFTRQDLCGVSTCDTLGMADV 115 usage_00033.pdb 56 ---PQVGPSAAQTLRSFCAWQRGLNTPEDSDPDHFDTAILFTRQDLCGVSTCDTLGMADV 112 usage_00034.pdb 60 EEGPQVGPSAAQTLRSFCAWQRGLNTPEDSDPDHFDTAILFTRQDLCGVSTCDTLGMADV 119 usage_00035.pdb 60 EEGPQVGPSAAQTLRSFCAWQRGLNTPEDSDPDHFDTAILFTRQDLCGVSTCDTLGMADV 119 usage_00036.pdb 61 QKGPEVTSNAALTLRNFCNWQKQHNPPSDRDAEHYDTAILFTRQDLCGSQTCDTLGMADV 120 P V AA TLR FC WQ N P D D H DTAILFTRQDLCG TCDTLGMADV usage_00001.pdb 115 GTVCDPARSCAIVEDDGLQSAFTAAHELGHVFNMLHDNSKPCISLN-------------- 160 usage_00002.pdb 115 GTVCDPARSCAIVEDDGLQSAFTAAHELGHVFNMLHDNSKPCISL--------------- 159 usage_00009.pdb 116 GTVCDPARSCAIVEDDGLQSAFTAAHQLGHVFNMLHDNSKPCISL--------------- 160 usage_00010.pdb 116 GTVCDPARSCAIVEDDGLQSAFTAAHQLGHVFNMLHDNSKPCISL--------------- 160 usage_00011.pdb 115 GTVCDPARSCAIVEDDGLQSAFTAAHQLGHVFNMLHDNSKPCISLN-------------- 160 usage_00023.pdb 115 GTVCDPSRSCSVIEDDGLQAAFTTAHELGHVFNMPHDDA--------------------- 153 usage_00031.pdb 115 GTVCDPARSCAIVEDDGLQSAFTAAHQLGHVFNMLHDNSKPCISL--------------- 159 usage_00032.pdb 116 GTVCDPARSCAIVEDDGLQSAFTAAHQLGHVFNMLHDNSKPCISL--------------- 160 usage_00033.pdb 113 GTVCDPARSCAIVEDDGLQSAFTAAHQLGHVFNMLHDNSKPCISLN-------------- 158 usage_00034.pdb 120 GTVCDPARSCAIVEDDGLQSAFTAAHQLGHVFNMLHDNSKPCISL--------------- 164 usage_00035.pdb 120 GTVCDPARSCAIVEDDGLQSAFTAAHQLGHVFNMLHDNSKPCISL--------------- 164 usage_00036.pdb 121 GTVCDPSRSCSVIEDDGLQAAFTTAHELGHVFNMPHDDAKQCASLNSHMMASMLSNLDHS 180 GTVCDP RSC EDDGLQ AFT AH LGHVFNM HD usage_00001.pdb ------------------- usage_00002.pdb ------------------- usage_00009.pdb ------------------- usage_00010.pdb ------------------- usage_00011.pdb ------------------- usage_00023.pdb ------------------- usage_00031.pdb ------------------- usage_00032.pdb ------------------- usage_00033.pdb 159 ------------------G 159 usage_00034.pdb ------------------- usage_00035.pdb ------------------- usage_00036.pdb 181 QPWSPCSAYMITSFLDNG- 198 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################