################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:10:42 2021 # Report_file: c_0050_3.html ################################################################################################ #==================================== # Aligned_structures: 5 # 1: usage_00005.pdb # 2: usage_00006.pdb # 3: usage_00009.pdb # 4: usage_00010.pdb # 5: usage_00015.pdb # # Length: 237 # Identity: 67/237 ( 28.3%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 88/237 ( 37.1%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 24/237 ( 10.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00005.pdb 1 -QLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVC 59 usage_00006.pdb 1 -QLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVC 59 usage_00009.pdb 1 -QLYLEAAIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELVS 59 usage_00010.pdb 1 -QLYLEAAIFGLEKVWSLTPSFRAE------HLTEFWHLELEAAWMDLWDIMKVEEELVS 53 usage_00015.pdb 1 SQLYLESVIASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDLLNHLEDLVC 60 QLYLE I L v S RAE HL E H E E l D m EeLV usage_00005.pdb 60 DTVDRLLADEEAKKLLEHINPKFQ----PPERPFLRMEYKDAIKWLQEHNVENEFG-NTF 114 usage_00006.pdb 60 DTVDRLLADEEAKKLLEHINPKFQ----PPERPFLRMEYKDAIKWLQEHNVENEFG-NTF 114 usage_00009.pdb 60 YMVQRTLEL--RKKEIEMFRDDLTTLKN-TEPPFPRISYDEAIDILQSKGV-------NV 109 usage_00010.pdb 54 YMVQRTLEL--RKKEIEMFRDDLTTLKN-TEPPFPRISYDEAIDILQSKGV-------NV 103 usage_00015.pdb 61 TVIDNVMAV--HGDKIRKMNPHLK----LPTRPFKRMTYADAIKYCNDHGILN--KDKPF 112 v r l kk e e PF R Y AI lq v usage_00005.pdb 115 TYGEDIAEAAERFMTDTINKPILLNRFPSEIKAFYMQRDAQDNTLTESVDLLMPG-VGEI 173 usage_00006.pdb 115 TYGEDIAEAAERFMTDTINKPILLNRFPSEIKAFYMQRDAKDNTLTESVDLLMPG-VGEI 173 usage_00009.pdb 110 EWGDDLGADEERVLTEEFDRPFFVYGYPKHIKAFYMKEDPNDPRKVLASDMLAPEGYGEI 169 usage_00010.pdb 104 EWGDDLGADEERVLTEEFDRPFFVYGYPKHIKAFYMKEDPNDPRKVLASDMLAPEGYGEI 163 usage_00015.pdb 113 EYGEDISEKPERQMTDEIGCPIFMIHFPSKMKAFYMSKVPGHPDLTESVDLLMPG-VGEI 171 G D ER T P P iKAFYM d d D L P GEI usage_00005.pdb 174 VGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLERFICWLTN 230 usage_00006.pdb 174 VGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLERFICWLTN 230 usage_00009.pdb 170 IGGSQREDDYDKLLNRILEEGMDPKDYEWYLDLRRYGSVPHSGFGLGVERLVAWVL- 225 usage_00010.pdb 164 IGGSQREDDYDKLLNRILEEGMDPKDYEWYLDLRRYGSVPHSGFGLGVERLVAWVL- 219 usage_00015.pdb 172 VGGSMRIWNYDELMGAYKANGLNPDPYYWYTQQRKYGSCPHGGYGLGVERLVMWL-- 226 GGS R D L dPk Y WYld R YG PH G GLG ER W #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################