################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:17:43 2021 # Report_file: c_0765_8.html ################################################################################################ #==================================== # Aligned_structures: 10 # 1: usage_00048.pdb # 2: usage_00135.pdb # 3: usage_00152.pdb # 4: usage_00168.pdb # 5: usage_00169.pdb # 6: usage_00170.pdb # 7: usage_00171.pdb # 8: usage_00303.pdb # 9: usage_00304.pdb # 10: usage_00390.pdb # # Length: 96 # Identity: 11/ 96 ( 11.5%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 21/ 96 ( 21.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 42/ 96 ( 43.8%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00048.pdb 1 --VSVLIPAAG----------GPKAFLQV-GGRTLLEWTLAAFRD---AAEVLVALPPGA 44 usage_00135.pdb 1 LDVCAVVPAAG---------ECPKQYLSI-GNQTILEHSVHALLAHPRVKRVVIAISPGD 50 usage_00152.pdb 1 ---CAVVPAAGF-GRRMQT-ECPKQYLSI-GNQTILEHSVHALLAHPRVKRVVIAISPGD 54 usage_00168.pdb 1 LDVCAVVPAA------------PKQYLSI-GNQTILEHSVHALLAHPRVKRVVIAIS--- 44 usage_00169.pdb 1 LDVCAVVPAAGFG---------PKQYLSI-GNQTILEHSVHALLAHPRVKRVVIAISPGD 50 usage_00170.pdb 1 LDVCAVVPA------------CPKQYLSI-GNQTILEHSVHALLAHPRVKRVVIAISPGD 47 usage_00171.pdb 1 --KYVIIPAAG--I-----GDIPKQYYKLNNGKTILDNTLVKFIDNPLFDKIFVAI---- 47 usage_00303.pdb 1 --VCAVVPAA---------------------NQTILEHSVHALLAHPRVKRVVIAI---- 33 usage_00304.pdb 1 LDVCAVVPAAG------------KQYLSI-GNQTILEHSVHALLAHPRVKRVVIAISPGD 47 usage_00390.pdb 1 -DVCAVVPAA-------------KQYLSI-GNQTILEHSVHALLAHPRVKRVVIAISPGD 45 PA TiLe a v Ai usage_00048.pdb 45 EP-------PKG-LGAVFLEGGATRQASVARLLEAA 72 usage_00135.pdb 51 --SRFAQLPLANHPQITVVDGGDERADSVLTGLKAA 84 usage_00152.pdb 55 --SRFAQLPLANHPQITVVDGGDERADSVLAGLKAA 88 usage_00168.pdb 45 --SRFAQLPLANHPQITVVDGGDERADSVLAGLKAA 78 usage_00169.pdb 51 --SRFAQLPLANHPQITVVDGGDERADSVLAGLKAA 84 usage_00170.pdb 48 --SRFAQLPLANHPQITVVDGGDERADSVLAGLKAA 81 usage_00171.pdb 48 ---FWNNSLYYNHDKIVVCNGGETRFNSVYNALNVI 80 usage_00303.pdb 34 --------PLANHPQITVVDGGDERADSVLAGLKAA 61 usage_00304.pdb 48 --SRFAQLPLANHPQITVVDGGDERADSVLAGLKAA 81 usage_00390.pdb 46 --SRFAQLPLANHPQITVVDGGDERADSVLAGLKAA 79 n i v GG R SV L aa #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################