################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:13:29 2021 # Report_file: c_1484_327.html ################################################################################################ #==================================== # Aligned_structures: 13 # 1: usage_00967.pdb # 2: usage_02986.pdb # 3: usage_03258.pdb # 4: usage_03331.pdb # 5: usage_03332.pdb # 6: usage_03603.pdb # 7: usage_03893.pdb # 8: usage_04055.pdb # 9: usage_04056.pdb # 10: usage_04057.pdb # 11: usage_04139.pdb # 12: usage_04415.pdb # 13: usage_04854.pdb # # Length: 45 # Identity: 5/ 45 ( 11.1%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 32/ 45 ( 71.1%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 11/ 45 ( 24.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00967.pdb 1 -LEDNMETLNDNLKVIEKA---DNAAQVKDALTKMRAAALDAQKA 41 usage_02986.pdb 1 DLEDNMETLNDNLKVIEKA---DNAAQVKDALTKMAAAAADAW-- 40 usage_03258.pdb 1 --EDNMETLNDNLKVIEKA---DNAAQVKDALTKMRAAALDAQKA 40 usage_03331.pdb 1 -LEDNMETLNDNLKVIEKA---DNAAQVKDALTKMRAAALDAQ-- 39 usage_03332.pdb 1 -LEDNMETLNDNLKVIEKA---DNAAQVKDALTKMRAAALDAQ-- 39 usage_03603.pdb 1 --EDNMETLNDNLKVIEKA---DNAAQVKDALTKMAAAAADA--- 37 usage_03893.pdb 1 -LEDNMETLNDNLKVIEKA---DNAAQVKDALTKMAAAAADAWSA 41 usage_04055.pdb 1 DLEDNMETLNDNLKVIEKA---DNAAQVKDALTKMAAAACDAW-- 40 usage_04056.pdb 1 --EDNMETLNDNLKVIEKA---DNAAQVKDALTKMAAAACD---- 36 usage_04057.pdb 1 DLEDNMETLNDNLKVIEKA---DNAAQVKDALTKMAAAACDA--- 39 usage_04139.pdb 1 ----MADGGSERADGRIVKMEVDYSATVDQRLPECAKLAKEG--- 38 usage_04415.pdb 1 -LEDNMETLNDNLKVIEKA---DNAAQVKDALTKMAAAAADA--- 38 usage_04854.pdb 1 -LEDNMETLNDNLKVIEKA---DNAAQVKDALTKMAAAAADAW-- 39 nmetlndnlkvieka DnaAqVkdaLtkm aaA d #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################