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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Wed Jan 20 23:30:37 2021
# Report_file: c_1070_32.html
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#====================================
# Aligned_structures: 6
#   1: usage_00002.pdb
#   2: usage_00003.pdb
#   3: usage_00312.pdb
#   4: usage_00313.pdb
#   5: usage_00551.pdb
#   6: usage_00552.pdb
#
# Length:         63
# Identity:       59/ 63 ( 93.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     59/ 63 ( 93.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            4/ 63 (  6.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00002.pdb         1  TLYIQGQDEYYARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHAL   60
usage_00003.pdb         1  -LYIQGQDEYYARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHAL   59
usage_00312.pdb         1  --YIQGQDEYYARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHAL   58
usage_00313.pdb         1  --YIQGQDEYYARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHAL   58
usage_00551.pdb         1  TLYIQGQDEYYARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHAL   60
usage_00552.pdb         1  ---IQGQDEYYARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHAL   57
                              IQGQDEYYARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHAL

usage_00002.pdb        61  RA-   62
usage_00003.pdb        60  RAG   62
usage_00312.pdb        59  RAG   61
usage_00313.pdb        59  RAG   61
usage_00551.pdb        61  RA-   62
usage_00552.pdb        58  RA-   59
                           RA 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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