################################################################################################
# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Thu Jan 21 08:53:57 2021
# Report_file: c_0112_10.html
################################################################################################
#====================================
# Aligned_structures: 63
#   1: usage_00001.pdb
#   2: usage_00002.pdb
#   3: usage_00026.pdb
#   4: usage_00054.pdb
#   5: usage_00056.pdb
#   6: usage_00058.pdb
#   7: usage_00062.pdb
#   8: usage_00063.pdb
#   9: usage_00064.pdb
#  10: usage_00068.pdb
#  11: usage_00074.pdb
#  12: usage_00075.pdb
#  13: usage_00078.pdb
#  14: usage_00079.pdb
#  15: usage_00080.pdb
#  16: usage_00081.pdb
#  17: usage_00082.pdb
#  18: usage_00083.pdb
#  19: usage_00084.pdb
#  20: usage_00093.pdb
#  21: usage_00094.pdb
#  22: usage_00117.pdb
#  23: usage_00118.pdb
#  24: usage_00119.pdb
#  25: usage_00132.pdb
#  26: usage_00139.pdb
#  27: usage_00140.pdb
#  28: usage_00142.pdb
#  29: usage_00143.pdb
#  30: usage_00146.pdb
#  31: usage_00147.pdb
#  32: usage_00148.pdb
#  33: usage_00149.pdb
#  34: usage_00150.pdb
#  35: usage_00151.pdb
#  36: usage_00155.pdb
#  37: usage_00157.pdb
#  38: usage_00160.pdb
#  39: usage_00169.pdb
#  40: usage_00173.pdb
#  41: usage_00174.pdb
#  42: usage_00180.pdb
#  43: usage_00181.pdb
#  44: usage_00190.pdb
#  45: usage_00194.pdb
#  46: usage_00195.pdb
#  47: usage_00201.pdb
#  48: usage_00202.pdb
#  49: usage_00203.pdb
#  50: usage_00220.pdb
#  51: usage_00221.pdb
#  52: usage_00222.pdb
#  53: usage_00224.pdb
#  54: usage_00229.pdb
#  55: usage_00230.pdb
#  56: usage_00254.pdb
#  57: usage_00257.pdb
#  58: usage_00258.pdb
#  59: usage_00261.pdb
#  60: usage_00262.pdb
#  61: usage_00264.pdb
#  62: usage_00273.pdb
#  63: usage_00274.pdb
#
# Length:        115
# Identity:       32/115 ( 27.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     46/115 ( 40.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            8/115 (  7.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00001.pdb         1  --VMTQSPVSLPVSLGDQASISCRSSQSLG-HSSGNTYLHWFLQKPGQSPKLLIYKVSNR   57
usage_00002.pdb         1  --VMTQSPVSLPVSLGDQASISCRSSQSLG-HSSGNTYLHWFLQKPGQSPKLLIYKVSNR   57
usage_00026.pdb         1  -IELTQTPLSLPVSLGDQASISCRSSQSIVHSN-GNTYLEWYLQKPGQSPKLLIYKVSNR   58
usage_00054.pdb         1  ELVMTQTPLSLPVSLGDQASISCRSSQSIVHSN-GNTYLEWYLQKPGQSPKLLIYKVSNR   59
usage_00056.pdb         1  --VMTQTPLSLPVSLGNQASISCRSSQSLVHSN-GNTYLHWYLQKPGQSPKLLIYKVSNR   57
usage_00058.pdb         1  -VVMTQTPLSLPVSLGDQASISCRSSQSLVHSN-GNTYLYWYLQKPGQSPKPLIYRVSNR   58
usage_00062.pdb         1  -VVMTQTPLSLPVSLGNQASISCRSSQSLVHSN-GNTYLHWYLQKPGQSPKLLIYKVSNR   58
usage_00063.pdb         1  -VLMTQTPLSLPVSLGDQASISCRSSQTIVHSN-GDTYLDWFLQKPGQSPKLLIYKVSNR   58
usage_00064.pdb         1  -VLMTQTPLSLPVSLGDQASISCRSSQTIVHSN-GDTYLDWFLQKPGQSPKLLIYKVSNR   58
usage_00068.pdb         1  --VMTQTPLSLPVSLGDQASISCRSSQSLVHSN-GNTYLHWYLQKPGQSPKLLIYTVSNR   57
usage_00074.pdb         1  DIVMTQTPLSLSVTPGQPASISCRSSQSIVHSD-GNIYLEWYLQKPGQSPKLLIYKVSYR   59
usage_00075.pdb         1  DIVMTQTPLSLSVTPGQPASISCRSSQSIVHSD-GNIYLEWYLQKPGQSPKLLIYKVSYR   59
usage_00078.pdb         1  DIVMTQTPLSLSVTPGQPASISCRSSQSIVHSD-GNIYLEWYLQKPGQSPKLLIYKVSYR   59
usage_00079.pdb         1  DIVMTQTPLSLSVTPGQPASISCRSSQSIVHSD-GNIYLEWYLQKPGQSPKLLIYKVSYR   59
usage_00080.pdb         1  DIVMTQTPLSLSVTPGQPASISCRSSQSIVHSD-GNIYLEWYLQKPGQSPKLLIYKVSYR   59
usage_00081.pdb         1  -IVMTQTPLSLSVTPGQPASISCRSSQSIVHSD-GNIYLEWYLQKPGQSPKLLIYKVSYR   58
usage_00082.pdb         1  DIVMTQTPLSLSVTPGQPASISCRSSQSIVHSD-GNIYLEWYLQKPGQSPKLLIYKVSYR   59
usage_00083.pdb         1  DIVMTQTPLSLSVTPGQPASISCRSSQSIVHSD-GNIYLEWYLQKPGQSPKLLIYKVSYR   59
usage_00084.pdb         1  DIVMTQTPLSLSVTPGQPASISCRSSQSIVHSD-GNIYLEWYLQKPGQSPKLLIYKVSYR   59
usage_00093.pdb         1  --LMTQTPLSLPVSLGDQASISCRSSQSIVHSN-GNTYLEWYLQKPGQSPKLLIYKVSNR   57
usage_00094.pdb         1  --LMTQTPLSLPVSLGDQASISCRSSQSIVHSN-GNTYLEWYLQKPGQSPKLLIYKVSNR   57
usage_00117.pdb         1  DIELTQSPATLSVTPGNSVSISCRASQSLVNED-GNTYLFWYQQKSHESPRLLIKYASQS   59
usage_00118.pdb         1  -VVMTQTPLSLSVSLGDQASISCRSSQSLVHSN-GNTFLQWYLQKPGQSPKLLIYKVSNR   58
usage_00119.pdb         1  -VVMTQTPLSLSVSLGDQASISCRSSQSLVHSN-GNTFLQWYLQKPGQSPKLLIYKVSNR   58
usage_00132.pdb         1  -VVMTQTPLSLPVSLGDQASISCRSSQSLVHSN-GNTYLHWYLQKPGQSPNLLIYKVSNR   58
usage_00139.pdb         1  -ILMNQTPLSLPVSLGDQASISCRSSQYIVHRN-GNTYLEWYLQKPGQSPKLLIYKVSNR   58
usage_00140.pdb         1  -ILMNQTPLSLPVSLGDQASISCRSSQYIVHRN-GNTYLEWYLQKPGQSPKLLIYKVSNR   58
usage_00142.pdb         1  -VLMTQTPLSLPVSLGDQASISCRSSQSIVHSN-GNTYLEWYLQKPGQSPKLLIYKVSNR   58
usage_00143.pdb         1  -VLMTQTPLSLPVSLGDQASISCRSSQSIVHSN-GNTYLEWYLQKPGQSPKLLIYKVSNR   58
usage_00146.pdb         1  -VLMTQTPLSLPVSLGDQASISCRSSQSIVHSN-GNTYLEWYLQKPGQSPKLLIYKVSNR   58
usage_00147.pdb         1  -VLMTQTPLSLPVSLGDQASISCRSSQSIVHSN-GNTYLEWYLQKPGQSPKLLIYKVSNR   58
usage_00148.pdb         1  -VLMTQTPLSLPVSLGDQASISCRSSQSIVHSN-GNTYLEWYLQKPGQSPKLLIYKVSNR   58
usage_00149.pdb         1  -VLMTQTPLSLPVSLGDQASISCRSSQSIVHSN-GNTYLEWYLQKPGQSPKLLIYKVSNR   58
usage_00150.pdb         1  --VMTQSPLSLPVSLGDQASISCRSSQSLVHSN-GNTYLHWYLQKPGQSPKLLIYKVSNR   57
usage_00151.pdb         1  --VMTQSPLSLPVSLGDQASISCRSSQSLVHSN-GNTYLHWYLQKPGQSPKLLIYKVSNR   57
usage_00155.pdb         1  -ILMTQTPLYLPVSLGDQASISCRSSQTIVHNN-GNTYLEWYLQKPGQSPQLLIYKVSNR   58
usage_00157.pdb         1  --LMTQTPLSLPVSLGDQASISCRSSQSIVHGN-GNTYLEWYLQKPGQSPKLLIYKISNR   57
usage_00160.pdb         1  -VVMTQTPLSLPVSLGNQASISCRSSQSLVHSN-GNTYLHWYLQKPGQSPKLLIYKVSNR   58
usage_00169.pdb         1  --LLTQIPLSLPVSLGDQASISCRSSQSIVHSN-GNTYLEWYLQKPGQSPKLLIYKVSTR   57
usage_00173.pdb         1  -VVLTQTPLSLPVRLGDQASISCRSSQSLLHSD-GNTYLHWYLQKPGQSPKLLIYKVSNR   58
usage_00174.pdb         1  -VVLTQTPLSLPVRLGDQASISCRSSQSLLHSD-GNTYLHWYLQKPGQSPKLLIYKVSNR   58
usage_00180.pdb         1  -IVMTQTPLSLPVSLGDKASISCRSSQALVHSN-GNTYLHWYLQKPGQSPKLLIYKVSNR   58
usage_00181.pdb         1  -VVMTQTPLSLPVSLGDQASISCRSSQSLVHSN-GNTYLHWYLQKPGQSPKLLIYKVSNR   58
usage_00190.pdb         1  DVLMTQTPLSLPVSLGDQASISCRSSQSIVHNN-GNTYLDWSLQKPGQSPKLLIYKVSNR   59
usage_00194.pdb         1  --LMTQSPLSLPVSLGDQASISCRCSQSIVKSN-GHTYLEWYLQKPGRSPKLLIYKVSNR   57
usage_00195.pdb         1  --LMTQSPLSLPVSLGDQASISCRCSQSIVKSN-GHTYLEWYLQKPGRSPKLLIYKVSNR   57
usage_00201.pdb         1  -VVMTQTPLSLSVSLGDQASISCRSSQSLVHSN-GNTYLHWYLQKPGQSPKLLIYKVSNR   58
usage_00202.pdb         1  -VLMTQTPLSLPVSLGDQASISCRSSQSIVHNN-GNTYIEWYLQKPGQSPKLLIYKVSNR   58
usage_00203.pdb         1  -VLMTQTPLSLPVSLGDQASISCRSSQSIVHNN-GNTYIEWYLQKPGQSPKLLIYKVSNR   58
usage_00220.pdb         1  -VLMTQTPLSLPVSLGDQASISCRSSQSIVHSN-GNTYLEWYLQKPGQSPKLLIYKVSNR   58
usage_00221.pdb         1  -VVMTQTPLSLPVSLGDQASISCRSSQSLVHRN-GNTYLHWYLQKPGQSPKLLIHKVSNR   58
usage_00222.pdb         1  -VVMTQTPLSLPVSLGDQASISCRSSQSLVHRN-GNTYLHWYLQKPGQSPKLLIHKVSNR   58
usage_00224.pdb         1  -VVMTQIPLSLPVSLGDQASISCRSSQSLVHSN-GNTYLHWSLQKPGQSPNLLIYKVSNR   58
usage_00229.pdb         1  --VMTQTPLSLPVTPGEPASISCTSGQSLVHIN-GNTYLHWYLQKPGQSPKLLIYKVSNL   57
usage_00230.pdb         1  --VMTQTPLSLPVTPGEPASISCTSGQSLVHIN-GNTYLHWYLQKPGQSPKLLIYKVSNL   57
usage_00254.pdb         1  --LMTQTPLSLPVSLGDQASISCRSSQSIVHSN-GNTYLEWYLQKPGQSPKLLIYKVSNR   57
usage_00257.pdb         1  -VVVTQTPLSLPVSFGDQVSISCRSSQSLAKSY-GNTYLSWYLHKPGQSPQLLIYGISNR   58
usage_00258.pdb         1  DIVMTQATPSIPVTPGESVSISCRSNKSLLHSN-GNTYLYWFLQRPGQSPRLLIFRMSNL   59
usage_00261.pdb         1  -VVMTQTPLSLPVSLGDQASISCRSSQSLVHSN-GNTYLNWYLQKAGQSPKLLIYKVSNR   58
usage_00262.pdb         1  -ILMNQTPLSLPVSLGDQASISCRSSQYIVHRN-GNTYLEWYLQKPGQSPKLLIYKVSNR   58
usage_00264.pdb         1  --VMTQTPLSLPVSLGDQASISCRSSQSLVHSN-GNTYLHWYLQKPGQSPKLLIYKVSNR   57
usage_00273.pdb         1  --VMTQTPLSLPVTPGEPASISCTSGQSLVHIN-GNTYLHWYLQKPGQSPKLLIYKVSNL   57
usage_00274.pdb         1  -VVLTQTPLSLPVSLGDQASISCRSSQRLVHSN-GNIYLHWFLQKPGQSPKLLIYKLSSR   58
                                Q p  l V  G   SISC   q       G     W lqk g SP lLI   S  

usage_00001.pdb        58  FSGVPDRFSGSGSGTDFTFKISRVEAEDLGVYFCFQTTHDPYTFGGGTKLEI---  109
usage_00002.pdb        58  FSGVPDRFSGSGSGTDFTFKISRVEAEDLGVYFCFQTTHDPYTFGGGTKLEI---  109
usage_00026.pdb        59  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEI---  110
usage_00054.pdb        60  FSGVPDRFSGSGSGTDFTLKINRVEAEDLGVYYCFQGSHLPPTFGGGTKLEI---  111
usage_00056.pdb        58  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQSTHVPFTFGSGTKLE----  108
usage_00058.pdb        59  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCFQGTHVPYTFGGGTRLEI---  110
usage_00062.pdb        59  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQSTHVPFTFGSGTKLEI---  110
usage_00063.pdb        59  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPPTFGGGTKLEI---  110
usage_00064.pdb        59  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPPTFGGGTKLEI---  110
usage_00068.pdb        58  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQSTHFPTFGGGTKLEI----  108
usage_00074.pdb        60  FSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQASHVPYTFGQGTKLEIKRT  114
usage_00075.pdb        60  FSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQASHVPYTFGQGTKLEIKRT  114
usage_00078.pdb        60  FSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQASHVPYTFGQGTKLEI---  111
usage_00079.pdb        60  FSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQASHVPYTFGQGTKLEI---  111
usage_00080.pdb        60  FSGVPDRFSGSGSGTGFTLKISRVEAEDVGVYYCFQASHVPYTFGGGTKLEI---  111
usage_00081.pdb        59  FSGVPDRFSGSGSGTGFTLKISRVEAEDVGVYYCFQASHVPYTFGGGTKLEI---  110
usage_00082.pdb        60  FSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQASHVPYTFGQGTKLEIKRT  114
usage_00083.pdb        60  FSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQASHVPYTFGQGTKLEIKRT  114
usage_00084.pdb        60  FSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQASHVPYTFGQGTKLEI---  111
usage_00093.pdb        58  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPWTFGGGTKLEI---  109
usage_00094.pdb        58  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPWTFGGGTKLEI---  109
usage_00117.pdb        60  ISGIPSRFSGSGSGTDFTLSINSVETEDLAVYFCQQITDWPFTFGGGTKLEIKRA  114
usage_00118.pdb        59  FSGVPDRFSGSGSGTDFTLKISRMEAEDLGIYFCSQTTHVPWTFGGGTKLEIKRA  113
usage_00119.pdb        59  FSGVPDRFSGSGSGTDFTLKISRMEAEDLGIYFCSQTTHVPWTFGGGTKLEI---  110
usage_00132.pdb        59  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQSTHVPFTFGSGTKLEI---  110
usage_00139.pdb        59  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEL---  110
usage_00140.pdb        59  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEL---  110
usage_00142.pdb        59  FSGVPDRFSGSGSGTDFTLKINRVEAEDLGIYYCLQGSHVPLTFGAGTTLEL---  110
usage_00143.pdb        59  FSGVPDRFSGSGSGTDFTLKINRVEAEDLGIYYCLQGSHVPLTFGAGTTLEL---  110
usage_00146.pdb        59  FSGVPDRFSGSGSGTDFTLKINRVEAEDLGIYYCLQGSHVPLTFGAGTTLEL---  110
usage_00147.pdb        59  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPLTFGAGTKLEL---  110
usage_00148.pdb        59  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPLTFGAGTKLEI---  110
usage_00149.pdb        59  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPLTFGAGTKLEI---  110
usage_00150.pdb        58  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQSTHVPPLTFGAGTKLEL--  110
usage_00151.pdb        58  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQSTHVPPLTFGAGTKLEL--  110
usage_00155.pdb        59  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEI---  110
usage_00157.pdb        58  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKRA  112
usage_00160.pdb        59  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQSTHVPFTFGSGTKLEI---  110
usage_00169.pdb        58  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPLTFGAGTQLEL---  109
usage_00173.pdb        59  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQTTHVPTFGGGTKLEI----  109
usage_00174.pdb        59  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQTTHVPTFGGGTKLEI----  109
usage_00180.pdb        59  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVFFCSQSTHVPRTFGGGTKLEI---  110
usage_00181.pdb        59  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQSTHVPRTFGGGTKLEIKRA  113
usage_00190.pdb        60  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPPTFGGGTKLEI---  111
usage_00194.pdb        58  FSGVPDRFSGSGSGTDFTLRISRVEAEDLGVYYCFQGSHIPWTFGGGTKLES---  109
usage_00195.pdb        58  FSGVPDRFSGSGSGTDFTLRISRVEAEDLGVYYCFQGSHIPWTFGGGTKLES---  109
usage_00201.pdb        59  FSGVPDRLSGSGSGTDFTLKISRVEAEDLAVYFCSQSTHVPPTFGGGTKLELKRA  113
usage_00202.pdb        59  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPFTFGSGTKLEIKRA  113
usage_00203.pdb        59  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPFTFGSGTKLEIKRA  113
usage_00220.pdb        59  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPWTFGGGTKLEI---  110
usage_00221.pdb        59  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQSTHVPPLTFGAGTKLEL--  111
usage_00222.pdb        59  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQSTHVPPLTFGAGTKLEL--  111
usage_00224.pdb        59  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQSTHDPWTFGGGTKLEIKRA  113
usage_00229.pdb        58  FSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYFCSQSTHFPFTFGQGTKLEI---  109
usage_00230.pdb        58  FSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYFCSQSTHFPFTFGQGTKLEI---  109
usage_00254.pdb        58  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPLTFGAGTKLEL---  109
usage_00257.pdb        59  FSGVPDRFSGSGSGTDFTLKISTIKPEDLGMYYCLQGTHQPYTFGGGTKLEI---  110
usage_00258.pdb        60  ASGVPDRFSGSGSGTAFTLRISRVEAADVGIYFCLQHLEYPFTFGAGTKLEL---  111
usage_00261.pdb        59  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYFCSQTTHVPPTFGGGTKLEI---  110
usage_00262.pdb        59  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEL---  110
usage_00264.pdb        58  FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQSTHVPRTFGGGTKLEI---  109
usage_00273.pdb        58  FSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYFCSQSTHFPFTFGQGTKLEI---  109
usage_00274.pdb        59  FSGVPDRFSGSGSGTDFTLKISRVESEDLGIYYCSQTTHVPYTFGGGTKLEI---  110
                            SGvPdRfSGSGSGT FT  I   e eD   y C Q    P              


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################