################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:59:23 2021 # Report_file: c_0118_22.html ################################################################################################ #==================================== # Aligned_structures: 13 # 1: usage_00040.pdb # 2: usage_00127.pdb # 3: usage_00128.pdb # 4: usage_00204.pdb # 5: usage_00205.pdb # 6: usage_00235.pdb # 7: usage_00247.pdb # 8: usage_00276.pdb # 9: usage_00442.pdb # 10: usage_00469.pdb # 11: usage_00551.pdb # 12: usage_00552.pdb # 13: usage_00553.pdb # # Length: 136 # Identity: 46/136 ( 33.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 59/136 ( 43.4%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 22/136 ( 16.2%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00040.pdb 1 QVQLVQSGAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNY 60 usage_00127.pdb 1 VQLLEQSGAEVKKPGSSVKVSCQVFGDTFSRYTIQWLRQAPGQGPEWMGNIIPVYNTPNY 60 usage_00128.pdb 1 VQLLEQSGAEVKKPGSSVKVSCQVFGDTFSRYTIQWLRQAPGQGPEWMGNIIPVYNTPNY 60 usage_00204.pdb 1 QVQLVQSGAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNY 60 usage_00205.pdb 1 -VQLVQSGAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNY 59 usage_00235.pdb 1 -VQLVQSGAEVKKPGESLKISCKGSGYSFTSYWIGWVRQAPGQGLEWMGWISAYNGNTNY 59 usage_00247.pdb 1 -VQLVQSGVEVKKPGASVKVSCKASGYTFTNYYMYWVRQAPGQGLEWMGGINPSNGGTNF 59 usage_00276.pdb 1 QVQLVQSGAEVKKPGSSVKVSCEASGVTSSSYTISWVRLAPGQGLEWMGRITPIFDITNY 60 usage_00442.pdb 1 -VQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANY 59 usage_00469.pdb 1 QVQLVQSGAEVKKPGSSVKVSCKSSGGTSNNYAISWVRQAPGQGLDWMGGISPIFGSTAY 60 usage_00551.pdb 1 QVQLVQSGAEVKKPGSSVKVSCKASGGNFNTYTISWVRQAPGQGLEWMGRIIPIFGIVNP 60 usage_00552.pdb 1 QVQLVQSGAEVKKPGSSVKVSCKASGGNFNTYTISWVRQAPGQGLEWMGRIIPIFGIVNP 60 usage_00553.pdb 1 QVQLVQSGAEVKKPGSSVKVSCKASGGNFNTYTISWVRQAPGQGLEWMGRIIPIFGIVNP 60 L QSGaEVK PG Sv vSC G Y W RqAPG G eWMG p n usage_00040.pdb 61 APRFQGRITITADRSTSTAYLELNSLRPEDTAVYYCAREGTT-G-W-LG-KPI------- 109 usage_00127.pdb 61 AQKFQGRLSITADDSTSTAYMELSSLRSEDTAVYFCARVVIPNA-I-RHTMG-------- 110 usage_00128.pdb 61 AQKFQGRLSITADDSTSTAYMELSSLRSEDTAVYFCARVVIPNA-I-RHTMG-------- 110 usage_00204.pdb 61 APRFQGRITITADRSTSTAYLELNSLRPEDTAVYYCAREGTT-GWGWLG-KPI------- 111 usage_00205.pdb 60 APRFQGRITITADRSTSTAYLELNSLRPEDTAVYYCAREGTT-GWGWLG-KPI------- 110 usage_00235.pdb 60 AQKLQGRVTMTTDTSTSTAYMELRSLRSDDTAVYYCAREG----------D--------- 100 usage_00247.pdb 60 NEKFKNRVTLTTDSSTTTAYMELKSLQFDDTAVYYCARRDYR--------FD-------- 103 usage_00276.pdb 61 AQKFQGRVTLTADKSTGTTYMELSSLRSDDTAVYYCARDKSD------V-VVVTSIRPAY 113 usage_00442.pdb 60 AQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCARYDGI--------Y--------- 102 usage_00469.pdb 61 AQKFQGRVTISADIFSNTAYMELNSLTSEDTAVYFCARHGNY------Y-YY-------- 105 usage_00551.pdb 61 AQKFPGRVTINVDKSTNTAYMELSSLRSEDTAVYYCATSGVG------L-HF-------- 105 usage_00552.pdb 61 AQKFPGRVTINVDKSTNTAYMELSSLRSEDTAVYYCATSGVG------L-HF-------- 105 usage_00553.pdb 61 AQKFPGRVTINVDKSTNTAYMELSSLRSEDTAVYYCATSGVG------L-HF-------- 105 a f gR D st TaY EL SL DTAVY CA usage_00040.pdb 110 -GAFAHWGQGTLVTVS 124 usage_00127.pdb 111 -YYFDYWGQGTLVTVS 125 usage_00128.pdb 111 -YYFDYWGQGTLVTVS 125 usage_00204.pdb 112 -GAFAHWGQGTLVTVS 126 usage_00205.pdb 111 -GAFAHWGQGTLVTVS 125 usage_00235.pdb 101 -GAFDYWGQGTLVTVS 115 usage_00247.pdb 104 -MGFDYWGQGTTVTV- 117 usage_00276.pdb 114 YYGMDVWGQGTTVTVS 129 usage_00442.pdb 103 -GELDFWGQGTLVTV- 116 usage_00469.pdb 106 -SGMDVWGQGTTVTVS 120 usage_00551.pdb 106 -GYFDYWGQGTQVTVS 120 usage_00552.pdb 106 -GYFDYWGQGTQVTV- 119 usage_00553.pdb 106 -GYFDYWGQGTQVTVS 120 WGQGT VTV #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################