################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:03:14 2021 # Report_file: c_1081_38.html ################################################################################################ #==================================== # Aligned_structures: 13 # 1: usage_00419.pdb # 2: usage_00525.pdb # 3: usage_00610.pdb # 4: usage_00611.pdb # 5: usage_00612.pdb # 6: usage_00613.pdb # 7: usage_00614.pdb # 8: usage_00615.pdb # 9: usage_00623.pdb # 10: usage_00624.pdb # 11: usage_00625.pdb # 12: usage_00731.pdb # 13: usage_00821.pdb # # Length: 63 # Identity: 21/ 63 ( 33.3%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 27/ 63 ( 42.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 8/ 63 ( 12.7%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00419.pdb 1 RKQLAQIKEMVELPLRHPALFK-AI-GVKPPRGILLYGPPGTGKTLIARAVANETGAFFF 58 usage_00525.pdb 1 -KQLAQIKEMVELPLRHPALFK-AI-GVKPPRGILLYGPPGTGKTLIARAVANETGAFFF 57 usage_00610.pdb 1 ---LAQIKEMVELPLRHPALFK-AI-GVKPPRGILLYGPPGTGKTLIARAVANETGAFFF 55 usage_00611.pdb 1 ---LAQIKEMVELPLRHPALFK-AI-GVKPPRGILLYGPPGTGKTLIARAVANETGAFFF 55 usage_00612.pdb 1 ---LAQIKEMVELPLRHPALFK-AI-GVKPPRGILLYGPPGTGKTLIARAVANETGAFFF 55 usage_00613.pdb 1 ---LAQIKEMVELPLRHPALFK-AI-GVKPPRGILLYGPPGTGKTLIARAVANETGAFFF 55 usage_00614.pdb 1 ---LAQIKEMVELPLRHPALFK-AI-GVKPPRGILLYGPPGTGKTLIARAVANETGAFFF 55 usage_00615.pdb 1 ---LAQIKEMVELPLRHPALFK-AI-GVKPPRGILLYGPPGTGKTLIARAVANETGAFFF 55 usage_00623.pdb 1 -EQLGKIREMIELPLKHPELFER-L-GITPPKGVILYGPPGTGKTLIARAVANESGANFL 57 usage_00624.pdb 1 SEQLGKIREMIELPLKHPELFERLG--ITPPKGVILYGPPGTGKTLIARAVANESGANFL 58 usage_00625.pdb 1 EDVKREIKETVELPLL-KPDVF-KRLGIRPSKGFLLYGPPGVGKTLLAKAVATESNANFI 58 usage_00731.pdb 1 DKQIKEIKEVIELPVKHPELFE-AL-GIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFI 58 usage_00821.pdb 1 DNQIQEIKESVELPLTHPEYYE-EM-GIKPPKGVILYGPPGTGKTLLAKAVANQTSATFL 58 I E ELPl p pp G LYGPPGtGKTL A AVA a F usage_00419.pdb 59 LIN 61 usage_00525.pdb 58 LIN 60 usage_00610.pdb 56 LIN 58 usage_00611.pdb 56 LIN 58 usage_00612.pdb 56 LIN 58 usage_00613.pdb 56 LIN 58 usage_00614.pdb 56 LIN 58 usage_00615.pdb 56 LIN 58 usage_00623.pdb 58 SIN 60 usage_00624.pdb 59 SIN 61 usage_00625.pdb 59 SIK 61 usage_00731.pdb 59 RVS 61 usage_00821.pdb 59 RVV 61 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################