################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:03:28 2021 # Report_file: c_0328_2.html ################################################################################################ #==================================== # Aligned_structures: 7 # 1: usage_00280.pdb # 2: usage_00540.pdb # 3: usage_00542.pdb # 4: usage_00544.pdb # 5: usage_00622.pdb # 6: usage_00654.pdb # 7: usage_00656.pdb # # Length: 249 # Identity: 6/249 ( 2.4%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 29/249 ( 11.6%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 149/249 ( 59.8%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00280.pdb 1 -TAEINCFMHLLVQLFLWDSKELEQ--LVEFNRKVVIPNLLCYYNL--------RSLNLI 49 usage_00540.pdb 1 --RPRTGKAASTPLLPEVEAYLQLLVV--IFMMNSKRYKEAQKISDDLMQKIS-TQNRRA 55 usage_00542.pdb 1 --RPRTGKAASTPLLPEVEAYLQLLVV--IFMMNSKRYKEAQKISDDLMQKIS-TQNRRA 55 usage_00544.pdb 1 ---DGQATLLNLLLRNYLHYSL--------Y---DQAEKLVSKS-----VFPEQ----A- 36 usage_00622.pdb ------------------------------------------------------------ usage_00654.pdb 1 LLPEVEAYLQLLVVIFMMNSKRYK-----EAQKISDDLMQKISTQ----------N-RRA 44 usage_00656.pdb 1 ----------STPLLPEVEAYLQLLVV--IFMMNSKRYKEAQKISDDLMQKIS-TQNRRA 47 usage_00280.pdb 50 NAKLWFYIYLSHETLARSSEEINS-----DNQ-NIILRSTMMKFLKIASL-KHDNETKAM 102 usage_00540.pdb 56 LDLVAAKCYYYHARVY---E---------FLDKLDVVRSFLHARLRTATL-RHDADGQAT 102 usage_00542.pdb 56 LDLVAAKCYYYHARVY---E---------FLDKLDVVRSFLHARLRTATL-RHDADGQAT 102 usage_00544.pdb 37 NNNEWARYLYYTGRIK---A---------IQLEYSEARRTMTNALRKAPQH-TAVGFKQT 83 usage_00622.pdb 1 -AKLWFYIYLSHETL-ARSS----EEINSDNQ-NIILRSTMMKFLKIASL-KHDNETKAM 52 usage_00654.pdb 45 LDLVAAKCYYYHARVY---E---------FLDKLDVVRSFLHARLRTATL-RHDADGQAT 91 usage_00656.pdb 48 LDLVAAKCYYYHARVY---E---------FLDKLDVVRSFLHARLRTATL-RHDADGQAT 94 y h Rs L A l hd a usage_00280.pdb 103 LINLILRDFLNNG---EVDSASDFIS-KLE--YPHTDVSSSLEARYFFYLSKINAIQLDY 156 usage_00540.pdb 103 LLNLLLRNYLHYS---LY--DQAEKL-VSKS-VFPEQANNNEWARYLYYTGRIKAIQLEY 155 usage_00542.pdb 103 LLNLLLRNYLHYS---LY--DQAEKL-VSKS-VFPEQANNNEWARYLYYTGRIKAIQLEY 155 usage_00544.pdb 84 VHKLLIVVELLLGEIP-D--RLQFRQPSLKRS------LMPYFLLTQAVRTG-------- 126 usage_00622.pdb 53 LINLILRDFLNNG---EVD-SASDFI-SKLE-YPHTDVSSSLEARYFFYLSKINAIQLDY 106 usage_00654.pdb 92 LLNLLLRNYLHYS---LYDQAEKLVS-KSV--FPE-QANNNEWARYLYYTGRIKAIQLEY 144 usage_00656.pdb 95 LLNLLLRNYLHYS---LY--DQAEKL-VSKS-VFPEQANNNEWARYLYYTGRIKAIQLEY 147 l nL lr L ary y usage_00280.pdb 157 STANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMG--------------------- 195 usage_00540.pdb 156 SEARRTMTNALRKAPQH-TAVGFKQTVHKLLIVVELLLG--------------------- 193 usage_00542.pdb 156 SEARRTMTNALRKAPQH-TAVGFKQTVHKLLIVVELLLG--------------------- 193 usage_00544.pdb 127 -NLAKFNQVLDQFGE------KFQADG--------------------------------- 146 usage_00622.pdb 107 STANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYY 166 usage_00654.pdb 145 SEARRTMTNALRKAPQH-TAVGFKQTVHKLLIVVELLLG--------------------- 182 usage_00656.pdb 148 SEARRTMTNALRKAPQH-TAVGFKQTVHKLLIVVELLLG--------------------- 185 a a rkap gF q usage_00280.pdb --------- usage_00540.pdb --------- usage_00542.pdb --------- usage_00544.pdb --------- usage_00622.pdb 167 HLTKAVKLG 175 usage_00654.pdb --------- usage_00656.pdb --------- #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################