################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:43:25 2021 # Report_file: c_1121_59.html ################################################################################################ #==================================== # Aligned_structures: 7 # 1: usage_00208.pdb # 2: usage_00316.pdb # 3: usage_00355.pdb # 4: usage_00409.pdb # 5: usage_00420.pdb # 6: usage_00421.pdb # 7: usage_00512.pdb # # Length: 155 # Identity: 6/155 ( 3.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 14/155 ( 9.0%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 86/155 ( 55.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00208.pdb 1 MYLRITNIVE--SSFFTKFIIYLIVLNGITMGLETSKTFM---------QSFGVYTTLFN 49 usage_00316.pdb 1 ----------GPARIIAIVSVMVILISIVSFCLETLPIFR--FHTYSQT----DPFFIVE 44 usage_00355.pdb 1 ------------SSFFTKFIIYLIVLNMVTMMVEKE----GQS------QHMTEVLYWIN 38 usage_00409.pdb 1 ---------------FEYLMFALIMLNTICLGMQHY----HQS------EEMNHISDILN 35 usage_00420.pdb 1 ------------NRIFQFTVVSIIILNAVLI----GATTYELD------PLFLETIHLLD 38 usage_00421.pdb 1 -------------RIFQFTVVSIIILNAVLIGATTY----ELD------PLFLETIHLLD 37 usage_00512.pdb 1 ------------SSFFTKFIIYLIVLNGITMGLETSKTFM---------QSFGVYTTLFN 39 f I ln usage_00208.pdb 50 QIVITIFTIEIILRIYVHR---ISF-FKDPWSLFDFFVVAISLV---P--------TSS- 93 usage_00316.pdb 45 TLCIIWWSFEFLV-------------T-NIMNIIDIVAIIPYYV---TIFSNKSRV---- 83 usage_00355.pdb 39 VVFIILFTIEIILRIYVHR---ISF-FKDPWSLFDFVVVIISIV---G------------ 79 usage_00409.pdb 36 VAFTIIFTLEMILKLLAFK---ARGYFGDPWNVFDFLIVIGSII---D------------ 77 usage_00420.pdb 39 YGITIFFVIEILIRFIGEKQKA------SGWNIFDTVIVAISLIPIPN--------NSS- 83 usage_00421.pdb 38 YGITIFFVIEILI----------------GWNIFDTVIVAISLI---P-----------S 67 usage_00512.pdb 40 QIVITIFTIEIILRIYVHR---ISF-FKDPWSLFDFFVVAISLV---P--------TSS- 83 f E w fD v s usage_00208.pdb 94 G--------------FEILRVLRVLRLFRLVTAV- 113 usage_00316.pdb 84 ---------------VQIFRIMRILRIFKLSRH-- 101 usage_00355.pdb 80 --MFLADLIETYPTLFRVIRLARIGRILRLVTA-- 110 usage_00409.pdb 78 --VILSEIDTF-RISSAFFRLFRVMRLIKLLSRAE 109 usage_00420.pdb 84 FL------------VLRLLRIFRVLRLISVI---- 102 usage_00421.pdb 68 FL------------VLRLLRIFRVLRLISVI---- 86 usage_00512.pdb 84 G--------------FEILRVLRVLRLFRLVTAV- 103 R R R #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################