################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:49:17 2021 # Report_file: c_0143_12.html ################################################################################################ #==================================== # Aligned_structures: 17 # 1: usage_00001.pdb # 2: usage_00007.pdb # 3: usage_00053.pdb # 4: usage_00105.pdb # 5: usage_00121.pdb # 6: usage_00137.pdb # 7: usage_00199.pdb # 8: usage_00232.pdb # 9: usage_00248.pdb # 10: usage_00249.pdb # 11: usage_00322.pdb # 12: usage_00331.pdb # 13: usage_00340.pdb # 14: usage_00341.pdb # 15: usage_00352.pdb # 16: usage_00362.pdb # 17: usage_00363.pdb # # Length: 116 # Identity: 20/116 ( 17.2%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 61/116 ( 52.6%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 15/116 ( 12.9%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 DIVLTQSPASLSASVGETVTITCRASG-NIHNYLAWYQQKQGKSPQLLVYY--TTTLADG 57 usage_00007.pdb 1 DIVLTQSPASLSASVGETVTITCRASG-NIHNYLAWYQQKQGKSPQLLVYY--TTTLADG 57 usage_00053.pdb 1 -IQMTQSPASLSASVGETVTITCRPSE-NIYSYLAWYQQKQGKSPQLLVYK--AKTLPEG 56 usage_00105.pdb 1 DIVLTQSPASLSASVGETVTITCRASG-NIHNYLAWYQQKQGKSPQLLVYY--TTTLADG 57 usage_00121.pdb 1 -IVMTQSPASLSASVGDTVTITCRASE-FIYSSLTWYQQKQGGSPQLLVYA--ATNLADA 56 usage_00137.pdb 1 DIQMTQSPASLSASVGETVTITCRASG-NIHNYLAWYQQKQGKSPQLLVYN--AKTLADG 57 usage_00199.pdb 1 -LQMTQSPASLSASVGETVTITCRASE-NIYSYLAWYQQKQGKSPQLLVYN--AKTLAEG 56 usage_00232.pdb 1 -LNVEQSPQSLHVQEGDSTNFTCSFPSSNFY-ALHWYRWETAKSPEALFVMTLNGD--EK 56 usage_00248.pdb 1 -IQMTQSPASLSVSVGETVTITCRASE-NIYSNLVWYQQKQGKSPQVLVYA--ATNLPDG 56 usage_00249.pdb 1 -IQMTQSPASLSVSVGETVTITCRASE-NIYSNLVWYQQKQGKSPQVLVYA--ATNLPDG 56 usage_00322.pdb 1 -IQMTQSPASLSASVGETVTITCRASE-NIYSYLAWYQQKQGKSPQLLVYN--AKTLIEG 56 usage_00331.pdb 1 -IELTQTPVSLSASVGETVTITCRASE-NIYSYLAWYQQKQGKSPQFLVYN--AKTLGEG 56 usage_00340.pdb 1 -IVLTQSPASLSASVGETVTITCRASG-NIHNYLAWYQQKQGKSPQLLVYY--TTTLADG 56 usage_00341.pdb 1 -IVLTQSPASLSASVGETVTITCRASG-NIHNYLAWYQQKQGKSPQLLVYY--TTTLADG 56 usage_00352.pdb 1 -IVLTQSPASLSASVGETVTITCRASG-NIHNYLAWYQQKQGKSPQLLVYY--TTTLADG 56 usage_00362.pdb 1 -IQMTQSPASLSVSVGETVTITCRASE-NIYSNLVWYQQKQGKSPQVLVYA--ATNLPDG 56 usage_00363.pdb 1 -IQMTQSPASLSVSVGETVTITCRASE-NIYSNLVWYQQKQGKSPQVLVYA--ATNLPDG 56 tQsP SLs svG tvtiTCr s ni L WYqqkqgkSPq Lvy usage_00001.pdb 58 VPSRFSGSGSG--TQYSLKINSLQPEDFGSYYCQHFWSTPRTFGGGTKLEI----- 106 usage_00007.pdb 58 VPSRFSGSGSG--TQYSLKINSLQPDDFGSYYCQHFWSTPTFGGGTKLEI------ 105 usage_00053.pdb 57 VPSRFSGSGSG--THFSLKISSVQPEDFGTYYCQHHNGPPLTFGAGTKLEL----- 105 usage_00105.pdb 58 VPSRFSGSGSG--TQYSLKINSLQPEDFGSYYCQHFSSTPRTFGGGTKLEI----- 106 usage_00121.pdb 57 VPSRFSGSGSG--TQFSLKINRLQPEDFGTYYCQHFYGSTWAFGGGTKLEI----- 105 usage_00137.pdb 58 VPSRFSGSGSG--TQYSLKINSLQPEDFGSYYCQHFWSTPRTFGGGTKLEI----- 106 usage_00199.pdb 57 VPSRFSGSGSG--TQFSLKINSLQPEDFGSYYCQHHYGTPLTFGAGTKLEL----- 105 usage_00232.pdb 57 KKGRISATLNTKEGYSYLYIKGSQPEDSATYLCAFITGNQFYFGTGTSLTVIPNIQ 112 usage_00248.pdb 57 VPSRFSGSGSG--TQYSLKINSLQSEDSGSYYCQHFWETPFTFGSGTKLEI----- 105 usage_00249.pdb 57 VPSRFSGSGSG--TQYSLKINSLQSEDSGSYYCQHFWETPFTFGSGTKLEI----- 105 usage_00322.pdb 57 VPSRFSGSGSG--TQFSLKINSLQPEDFGSYFCQHHFGTPFTFGSGTELEI----- 105 usage_00331.pdb 57 VPSRFSGSGSG--TQFSLKINSLLPEDFGSYYCQHHYGTPPLTFGGGTKLEI---- 106 usage_00340.pdb 57 VPSRFSGSGSG--TQYSLKINSLQPEDFGSYYCQHFHSTPRTFGGGTKLEI----- 105 usage_00341.pdb 57 VPSRFSGSGSG--TQYSLKINSLQPEDFGSYYCQHFVSTPRTFGGGTKLEI----- 105 usage_00352.pdb 57 VPSRFSGSGSG--TQYSLKINSLQPEDFGSYYCQHFWSTPRTFGGGTKLEI----- 105 usage_00362.pdb 57 VPSRFSGSGSG--TQYSLKINSLQSEDSGSYYCQHFWETPFTFGSGTKLEI----- 105 usage_00363.pdb 57 VPSRFSGSGSG--TQYSLKINSLQSEDSGSYYCQHFWETPFTFGSGTKLEIKRA-- 108 vpsRfSgsgsg t sLkI q eD g Y Cqh g g #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################