################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:26:03 2021 # Report_file: c_0171_17.html ################################################################################################ #==================================== # Aligned_structures: 6 # 1: usage_00002.pdb # 2: usage_00060.pdb # 3: usage_00132.pdb # 4: usage_00133.pdb # 5: usage_00194.pdb # 6: usage_00195.pdb # # Length: 190 # Identity: 44/190 ( 23.2%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 112/190 ( 58.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 53/190 ( 27.9%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00002.pdb 1 GKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWD 60 usage_00060.pdb 1 ---SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWD 57 usage_00132.pdb 1 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDT----TIGVEFLNKDLEVDGHFVTMQIWD 56 usage_00133.pdb 1 ---SLFKVILLGDGGVGKSSLMNRYVTNKFDT----TIGVEFLNKDLEVDGHFVTMQIWD 53 usage_00194.pdb 1 ---SLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWD 57 usage_00195.pdb 1 ---RFIKCVTVGDGAVGKTCLLISYTSNTFP-----------FSANVV-------LGLWD 39 l K illGDGgVGKssLmnrYvtNkFd ln dle qiWD usage_00002.pdb 61 TAGQERFKSLRTPFYRGADCCLLTFSVDD----RQSFE-NLGNWQKEFIYYADVKDPEHF 115 usage_00060.pdb 58 TAGQERFRSLRTPFYRGSDCCLLTFSVDD----SQSFQ-NLSNWKKEFIYYADV-P-ESF 110 usage_00132.pdb 57 TAGQERFRSLRTPFYRGSDCCLLTFSVDD----SQSFQ-NLSNWKKEFIYYADVKEPESF 111 usage_00133.pdb 54 TAGQERFRSLRTPFYRGSDCCLLTFSVDD----SQSFQ-NLSNWKKEFIYYAD----ESF 104 usage_00194.pdb 58 TAGLERFRSLRTPFYRGSDCCLLTFSVDD----SQSFQ-NLSNWKKEFIYYADVKEPESF 112 usage_00195.pdb 40 T-AGEDYNRLRPLSYRGADVFILAFSLISKASY----ENVSKKWIPELKHY-----APGV 89 T g Erf sLRtpfYRG DcclLtFSvdd nl nW kEfiyY e f usage_00002.pdb 116 PFVVLGNKVDKE-----------DRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFE 164 usage_00060.pdb 111 PFVILGNKIDIS-----------ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFE 159 usage_00132.pdb 112 PFVILGNKIDIS-----------ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFE 160 usage_00133.pdb 105 PFVILGNKIDIS-----------ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFE 153 usage_00194.pdb 113 PFVILGNKTDIK-----------ERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFE 161 usage_00195.pdb 90 PIVLVGTKLDLRDDKQFFIDHAV--PITTVQGEELKKLIGAPAYIECSSKSQENVKGVFD 147 PfV lGnK D qv Teeaq wc nGdypY EtSaKd tNV aFe usage_00002.pdb 165 EAVRQVLA-- 172 usage_00060.pdb 160 EAVRRVLA-- 167 usage_00132.pdb 161 EAVRRVLA-- 168 usage_00133.pdb 154 EAVRRVLAT- 162 usage_00194.pdb 162 EAVRRILATE 171 usage_00195.pdb 148 AAIRVVL--- 154 eAvR vL #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################