################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 02:07:31 2021 # Report_file: c_0031_7.html ################################################################################################ #==================================== # Aligned_structures: 19 # 1: usage_00009.pdb # 2: usage_00010.pdb # 3: usage_00018.pdb # 4: usage_00023.pdb # 5: usage_00024.pdb # 6: usage_00026.pdb # 7: usage_00028.pdb # 8: usage_00034.pdb # 9: usage_00038.pdb # 10: usage_00050.pdb # 11: usage_00051.pdb # 12: usage_00063.pdb # 13: usage_00064.pdb # 14: usage_00065.pdb # 15: usage_00066.pdb # 16: usage_00074.pdb # 17: usage_00075.pdb # 18: usage_00120.pdb # 19: usage_00146.pdb # # Length: 252 # Identity: 5/252 ( 2.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 11/252 ( 4.4%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 69/252 ( 27.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00009.pdb 1 ----IALVV-STLNNPFFVSLK-DGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVR- 53 usage_00010.pdb 1 --DTIALVV-STLNNPFFVSLK-DGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVR- 55 usage_00018.pdb 1 --DTIALVV-STLNNPFFVSLK-DGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVR- 55 usage_00023.pdb 1 --DTIALVV-STLNNPFFVSLK-DGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVR- 55 usage_00024.pdb 1 --DTIALVV-STLNNPFFVSLK-DGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVR- 55 usage_00026.pdb 1 --DTIALVV-STLNNPFFVSLK-DGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVR- 55 usage_00028.pdb 1 ----LACSF-RSLTNPYYTAFN-KGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQK- 53 usage_00034.pdb 1 --TSVVFLNPGNSTETFWVSYSQ-F-QAAARDLGLDLRILYAERDPQNTLQQARELFQGR 56 usage_00038.pdb 1 GALKIGFSQ-ATQQSPFYVALT-DAAKAEAQAQGDELFYADANGDITKQNNDVQDLITR- 57 usage_00050.pdb 1 -QETIALTV-STLDNPFFVSLK-DGAQKKATELGYKLVVLDSQNDPSKELSNVEDLTVR- 56 usage_00051.pdb 1 ----IALVV-STLNNPFFVSLK-DGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVR- 53 usage_00063.pdb 1 ----IALVV-STLNNPFFVSLK-DGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVR- 53 usage_00064.pdb 1 --DTIALVV-STLNNPFFVSLK-DGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVR- 55 usage_00065.pdb 1 --DTIALVV-STLNNPFFVSLK-DGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVR- 55 usage_00066.pdb 1 ----IALVV-STLNNPFFVSLK-DGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVR- 53 usage_00074.pdb 1 --KTIGLVI-STLNNPFFVTLK-NGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQ- 55 usage_00075.pdb 1 --KTIGLVI-STLNNPFFVTLK-NGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQ- 55 usage_00120.pdb 1 --VRIALVR-EVGEGSFFERYL-AGAQSMARELGVTLLEATAHGDMARMVTMIENFITQ- 55 usage_00146.pdb 1 ----YALVQ-INQQALFFNL-N-KGAQDAAKASGKDLVIFNSNDNPVAQNDAIENYIQQ- 52 f A G usage_00009.pdb 54 -G-T-KILLINPTRSDAVGNAVKMANQANIPVITLDRQATKG-----E-------VVSHI 98 usage_00010.pdb 56 -G-T-KILLINPTRSDAVGNAVKMANQANIPVITLDRQATKG-----E-------VVSHI 100 usage_00018.pdb 56 -G-T-KILLINPTDSDAVDNAVKMANQANIPVITLDRQATKG-----E-------VVSHI 100 usage_00023.pdb 56 -G-T-KILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG-----E-------VVSHI 100 usage_00024.pdb 56 -G-T-KILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG-----E-------VVSHI 100 usage_00026.pdb 56 -G-T-KILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG-----E-------VVSHI 100 usage_00028.pdb 54 -TGGNLVLNVDPNDSADARVIVEACSKAGAYVTTIWNKPKDL-----HPWDYNPNYVAHL 107 usage_00034.pdb 57 DK-P-DYLLV--NEQYVAPQILRLSQGSGIKLFIVNSPLTLDQRWIG------------S 100 usage_00038.pdb 58 -G-I-NVLVINPVDPKGVTPSLAAAEAAGIKVVTVDRPVESG-------------AASFV 101 usage_00050.pdb 57 -G-A-KVLLINPTDSAAVSNAVAIANRNKIPVITLDRGAAKG-----E-------VVSHI 101 usage_00051.pdb 54 -G-V-KILLINPVDSDAVGNAVKMANQANIPVITLDRQATKG-----E-------VVSHI 98 usage_00063.pdb 54 -G-T-KILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG-----E-------VVSHI 98 usage_00064.pdb 56 -G-T-KILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG-----E-------VVSHI 100 usage_00065.pdb 56 -G-T-KILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG-----E-------VVSHI 100 usage_00066.pdb 54 -G-T-KILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG-----E-------VVSHI 98 usage_00074.pdb 56 -K-V-DVLLINPVDSDAVVTAIKEANSKNIPVITIDRSANGG-----D-------VVCHI 100 usage_00075.pdb 56 -K-V-DVLLINPVDSDAVVTAIKEANSKNIPVITIDRSANGG-----D-------VVCHI 100 usage_00120.pdb 56 -R-V-DAIIIDHGRPDPLMPKIKEALDRGIRVVTFDLVVDDN-----R--------VPEI 99 usage_00146.pdb 53 -G-V-KGILVAAIDVNGI-PAVKEAAAANIPVIAIDAVLPAG-----P-------QAAQV 96 i v usage_00009.pdb 99 ASDNVLGGKIAGDYIAKKAG----E-----GAKVIELQGIAGTSAARERGEGFQQAVAAH 149 usage_00010.pdb 101 ASDNVLGGKIAGDYIAKKAG----E-----GAKVIELQGIAGTSAARERGEGFQQAVAAH 151 usage_00018.pdb 101 ASDNVLGGKIAGDYIAKKAG----E-----GAKVIELQGIAGTSAARERGEGFQQAVAAH 151 usage_00023.pdb 101 ASDNVLGGKIAGDYIAKKAG----E-----GAKVIELQGIARTSAARERGEGFQQAVAAH 151 usage_00024.pdb 101 ASDNVLGGKIAGDYIAKKAG----E-----GAKVIELQGTAATSAARERGEGFQQAVAAH 151 usage_00026.pdb 101 ASDNVLGGKIAGDYIAKKAG----E-----GAKVIELQGIAGTSAARERGEGFQQAVAAH 151 usage_00028.pdb 108 SYDGVAYGEETATQLFKS-G----G-----KGGVVALGGIFSNVPAIERKAGLDAALKKF 157 usage_00034.pdb 101 VGDDEEAGYR-LKELLHKLG----PVPAGHGIELLAFSGLKVTPAAQLRERGLRRALAEH 155 usage_00038.pdb 102 GRDNKA-GELVGKAAVDTLGP---D-----GGKIIEIQGDAGGAVARDRRDGFQAAVSGR 152 usage_00050.pdb 102 ASDNVAGGK-AGDFIAQKLG----D-----GAKVIQLEGLAGTSAARERGEGFKQAIEAH 151 usage_00051.pdb 99 ASDNVLGGKIAGDYIAKKAG----E-----GAKVIELQGIAGTSAARERGEGFQQAVAAH 149 usage_00063.pdb 99 ASDNVLGGKIAGDYIAKKAG----E-----GAKVIELQGIAGTSAARERGEGFQQAVAAH 149 usage_00064.pdb 101 ASDNVLGGKIAGDYIAKKAG----E-----GAKVIELQGIAGTSAARERGEGFQQAVAAH 151 usage_00065.pdb 101 ASDNVLGGKIAGDYIAKKAG----E-----GAKVIELQGIAGTSAARERGEGFQQAVAAH 151 usage_00066.pdb 99 ASDNVLGGKIAGDYIAKKAG----E-----GAKVIELQGIAGTSAARERGEGFQQAVAAH 149 usage_00074.pdb 101 ASDNVKGGEMAAEFIAKALK----G-----KGNVVELEGIPGASAARDRGKGFDEAIAKY 151 usage_00075.pdb 101 ASDNVKGGEMAAEFIAKALK----G-----KGNVVELEGIPGASAARDRGKGFDEAIAKY 151 usage_00120.pdb 100 EQDDLLIGYLISKQLAVDFA----G-----NANVIYVN-VGGFAPLDKRDKMWQIIKWRF 149 usage_00146.pdb 97 GVDNIEGGRIIGQYFVDYVQ-KEGG-----QARLGIVGA-LNSAIQNQRQKGFEETLKSN 149 D G R g usage_00009.pdb 150 K-FNVLASQP-ADF-DRIKGLNVMQNLLTA-HPDVQAVFAQNDEM--ALGALRALQTAGK 203 usage_00010.pdb 152 K-FNVLASQP-ADF-DRIKGLNVMQNLLTA-HPDVQAVFAQNDEM--ALGALRALQTAGK 205 usage_00018.pdb 152 K-FNVLASQP-ADF-DRIKGLNVMQNLLTA-HPDVQAVFAQNDEM--ALGALRALQTAGK 205 usage_00023.pdb 152 K-FNVLASQP-ADF-DRIKGLNVMQNLLTA-HPDVQAVFAQNDEM--ALGALRALQTAGK 205 usage_00024.pdb 152 K-FNVLASQP-ADF-DRIKGLNVMQNLLTA-HPDVQAVFAQNDEM--ALGALRALQTAGK 205 usage_00026.pdb 152 K-FNVLASQP-ADF-DRIKGLNVMQNLLTA-HPDVQAVFAQNDEM--ALGALRALQTAGK 205 usage_00028.pdb 158 PGIQLLDFQV-ADW-NSQKAFPIQ--AWTRFNSKIKGVWAANDD---ALGAIEALRAEGL 210 usage_00034.pdb 156 PQVHLRQLVY-GEW-NRERAYRQAQQLLKR-YPKTQLVWSANDEALG----AQAARELGR 208 usage_00038.pdb 153 PNITIVEGPY-CDY-IRSKAVTA-QDLLQA-HPDLKGVYAQNDDALG----AQVLAENNR 204 usage_00050.pdb 152 K-FDVLASQP-ADF-DRTKGLNVTENLLAS-KGSVQAIFAQNDEA--LGALRAISAAGKK 205 usage_00051.pdb 150 K-FNVLASQP-ADF-DRIKGLNVMQNLLTA-HPDVQAVFAQNDEM--ALGALRALQTAGK 203 usage_00063.pdb 150 K-FNVLASQP-ADF-DRIKGLNVMQNLLTA-HPDVQAVFAQNDEM--ALGALRALQTAGK 203 usage_00064.pdb 152 K-FNVLASQP-ADF-DRIKGLNVMQNLLTA-HPDVQAVFAQNDEM--ALGALRALQTAGK 205 usage_00065.pdb 152 K-FNVLASQP-ADF-DRIKGLNVMQNLLTA-HPDVQAVFAQNDEM--ALGALRALQTAGK 205 usage_00066.pdb 150 K-FNVLASQP-ADF-DRIKGLNVMQNLLTA-HPDVQAVFAQNDEM--ALGALRALQTAGK 203 usage_00074.pdb 152 PDIKIVAKQA-ADF-DRSKGLSVMENILQA-QPKIDAVFAQNDEM--ALGAIKAIEAANR 206 usage_00075.pdb 152 PDIKIVAKQA-ADF-DRSKGLSVMENILQA-QPKIDAVFAQNDEM--ALGAIKAIEAANR 206 usage_00120.pdb 150 PGIKEVAKIGAVTGSTAADTQTRMEAAMKE-KPEANAVLAMWDEF--AKGAVRAIMQAGK 206 usage_00146.pdb 150 PKITIANVVD-GQN-VQDKA-TAAENLITG-NPDLTAIYATGEPA--LLGAIAAVENQGR 203 a d usage_00009.pdb 204 SD---VMVV-GF 211 usage_00010.pdb 206 SD---VMVV-GF 213 usage_00018.pdb 206 SD---VMVV-GF 213 usage_00023.pdb 206 SD---VMVV-GF 213 usage_00024.pdb 206 SD---VMVV-GF 213 usage_00026.pdb 206 SD---VMVV-GF 213 usage_00028.pdb 211 AG---QIPV-TG 218 usage_00034.pdb 209 KPGTDLLFS-G- 218 usage_00038.pdb 205 TD---VKVF-GV 212 usage_00050.pdb 206 VL----VVG-FD 212 usage_00051.pdb 204 SD---VMVV-GF 211 usage_00063.pdb 204 SD---VMVV-GF 211 usage_00064.pdb 206 SD---VMVV-GF 213 usage_00065.pdb 206 SD---VMVV-GF 213 usage_00066.pdb 204 SD---VMVV-GF 211 usage_00074.pdb 207 QG---IIVV-GF 214 usage_00075.pdb 207 QG---IIVV-GF 214 usage_00120.pdb 207 SD---QFKV-YS 214 usage_00146.pdb 204 QK---DIKVFG- 211 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################