################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:10:44 2021 # Report_file: c_0051_8.html ################################################################################################ #==================================== # Aligned_structures: 5 # 1: usage_00001.pdb # 2: usage_00027.pdb # 3: usage_00028.pdb # 4: usage_00050.pdb # 5: usage_00073.pdb # # Length: 220 # Identity: 50/220 ( 22.7%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 80/220 ( 36.4%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 29/220 ( 13.2%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 DKDMAKRVLRDARLAVAPFVCFDRHTA---AHADVDTLIAQL-GLPLFVKPANQGSSVGV 56 usage_00027.pdb 1 -KDLTKTVLRAGGIPVVDWHTLSPRDA---TEGVYQRLLDRW---ELFVKAVSLGSSVAT 53 usage_00028.pdb 1 -KDLTKTVLRAGGIPVVDWHTLSPRDA---TEGVYQRLLDRWGTSELFVKAVSLGSSVAT 56 usage_00050.pdb 1 DKDMAKRVLRDARLAVAPFVCFDRHTA----HADVDTLIAQL-GLPLFVKPANQ-V--GV 52 usage_00073.pdb 1 DKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKL-NYPVFVKPANLGSSVGI 59 Kd K vlr v a l lFVK s usage_00001.pdb 57 SQVRTADAFAAALALALAYDHKVLVEAAVAGREIECAVLGNAVPHASVCGEVV--VEIVI 114 usage_00027.pdb 54 LPVKTETEFTKAVKEVFRYDDRLMVEPRIRGREIECAVLGNGAPKASLPGEIIPHATTTT 113 usage_00028.pdb 57 LPVKTETEFTKAVKEVFRYDDRLMVEPRIRGREIECAVLGNGAPKASLPGEII--TTTT- 113 usage_00050.pdb 53 SQVRTADAFAAALALALAYDHKVLVEAAVAGREIECAVLGNAVPHASVCGEVV---EIVI 109 usage_00073.pdb 60 SKCNNEAELKEGIKEAFQFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVV--VQLKI 117 v t f a yD vE gREIEcAVLGN P As GE usage_00001.pdb 115 PADIDAQTQQRIQQIAVQAYQALGCAGMARVDVFLCADGRIVINEVNTLPGFTRISVYPK 174 usage_00027.pdb 114 SVDLSESVTKQIQQIAIDAFKMVHCSGMARVDFFVTPNNKVLVNEINTIPGFTNISMYPK 173 usage_00028.pdb 114 ----SESVTKQIQQIAIDAFKMVHCSGMARVDFFVTPNNKVLVNEINTIPGFTNISMYPK 169 usage_00050.pdb 110 PADIDAQTQQRIQQIAVQAYQALGCAGMARVDVFLCADGRIVINEVNTLPGFTRISVYPK 169 usage_00073.pdb 118 PADLDEDVQLTLRNMALEAFKETDCSGLVRADFFVTEDNQIYINETNAMPGFTAFSMYPK 177 iqqiA A C GmaRvD F NE Nt PGFT iS YPK usage_00001.pdb 175 LWQASGLDYRGLITRLIELALERHTDDQLL---------- 204 usage_00027.pdb 174 MWEASGLPCPNLLDQLIELAIDRHQEQQKLIRCYEVKARS 213 usage_00028.pdb 170 MWEASGLPCPNLLDQLIELAIDRHQEQQKLIRCYEVK--- 206 usage_00050.pdb 170 LWQASGLDYRGLITRLIELALERHTDDQLLRSA------- 202 usage_00073.pdb 178 LWENMGLSYPELITKLIELAKERHQDKQKNK--------- 208 W asGL L LIELA RH Q l #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################