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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Thu Jan 21 00:33:45 2021
# Report_file: c_1113_4.html
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#====================================
# Aligned_structures: 11
#   1: usage_00579.pdb
#   2: usage_00580.pdb
#   3: usage_00581.pdb
#   4: usage_00582.pdb
#   5: usage_00583.pdb
#   6: usage_00584.pdb
#   7: usage_00585.pdb
#   8: usage_00586.pdb
#   9: usage_00746.pdb
#  10: usage_00747.pdb
#  11: usage_00748.pdb
#
# Length:        104
# Identity:       73/104 ( 70.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     73/104 ( 70.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           18/104 ( 17.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00579.pdb         1  RMWPTVVPILGVTFCAASQAFWWVNFRLPFGAVFAALGLLIGEWINRYVNFWGWTYFPIS   60
usage_00580.pdb         1  RMWPTVVPILGVTFCAASQAFWWVNFRLPFGAVFAALGLLIGEWINRYVNFWGWTYFPIS   60
usage_00581.pdb         1  RMWPTVVPILGVTFCAASQAFWWVNFRLPFGAVFAALGLLIGEWINRYVNFWGWTYFPIS   60
usage_00582.pdb         1  -MWPTVVPILGVTFCAASQAFWWVNFRLPFGAVFAALGLLIGEWINRYVNFWGWTYFPIS   59
usage_00583.pdb         1  RMWPTVVPILGVTFCAASQAFWWVNFRLPFGAVFAALGLLIGEWINRYVNFWGWTYFPIS   60
usage_00584.pdb         1  RMWPTVVPILGVTFCAASQAFWWVNFRLPFGAVFAALGLLIGEWINRYVNFWGWTYFPIS   60
usage_00585.pdb         1  RMWPTVVPILGVTFCAASQAFWWVNFRLPFGAVFAALGLLIGEWINRYVNFWGWTYFPIS   60
usage_00586.pdb         1  -MWPTVVPILGVTFCAASQAFWWVNFRLPFGAVFAALGLLIGEWINRYVNFWGWTYFPIS   59
usage_00746.pdb         1  -----------VTFAAAAQAFFWENFKLPFGATFAVSGLLIGEWINRYCNFWGWTYFPIS   49
usage_00747.pdb         1  -----------VTFAAAAQAFFWENFKLPFGATFAVSGLLIGEWINRYCNFWGWTYFPIS   49
usage_00748.pdb         1  -----------VTFAAAAQAFFWENFKLPFGATFAVSGLLIGEWINRYCNFWGWTYFPIS   49
                                      VTF AA QAF W NF LPFGA FA  GLLIGEWINRY NFWGWTYFPIS

usage_00579.pdb        61  LVFPSALIVPAIWLDVILLLSGSYVITAVVGSLGWGL-------   97
usage_00580.pdb        61  LVFPSALIVPAIWLDVILLLSGSYVITAVVGSLGWGL-------   97
usage_00581.pdb        61  LVFPSALIVPAIWLDVILLLSGSYVITAVVGSLGWGL-------   97
usage_00582.pdb        60  LVFPSALIVPAIWLDVILLLSGSYVITAVVGSLGWGL-------   96
usage_00583.pdb        61  LVFPSALIVPAIWLDVILLLSGSYVITAVVGSLGWGL-------   97
usage_00584.pdb        61  LVFPSALIVPAIWLDVILLLSGSYVITAVVGSLGWGL-------   97
usage_00585.pdb        61  LVFPSALIVPAIWLDVILLLSGSYVITAVVGSLGWGL-------   97
usage_00586.pdb        60  LVFPSALIVPAIWLDVILLLSGSYVITAVVGSLGWGL-------   96
usage_00746.pdb        50  LVFPSALVVPALWLDIIMLLSGSYVITAVVGSLGWGLLFYPNNW   93
usage_00747.pdb        50  LVFPSALVVPALWLDIIMLLSGSYVITAVVGSLGWGLLFYPNNW   93
usage_00748.pdb        50  LVFPSALVVPALWLDIIMLLSGSYVITAVVGSLGWGLLFYPNNW   93
                           LVFPSAL VPA WLD I LLSGSYVITAVVGSLGWGL       


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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