################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:19:48 2021 # Report_file: c_1209_146.html ################################################################################################ #==================================== # Aligned_structures: 5 # 1: usage_00651.pdb # 2: usage_00910.pdb # 3: usage_01642.pdb # 4: usage_01708.pdb # 5: usage_01709.pdb # # Length: 56 # Identity: 0/ 56 ( 0.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 2/ 56 ( 3.6%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 24/ 56 ( 42.9%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00651.pdb 1 E--TLMVIDH--QK------KSTRIQASLFTASDREK-QRLNARLAYLSQQLTQ-- 43 usage_00910.pdb 1 ---NVLIYALAPEE------RQYGIQGGT-QW---TD-AELDAANNAAFQALSQE- 41 usage_01642.pdb 1 -NLSEITYEGKA--NF---GVLIIMECMT--D----NPTRTIANLKSYFNKT---- 40 usage_01708.pdb 1 ---RGIIAALGP---DGKPSRIVVIYTTGSQA----TMDERNRQIAEIGASLIKHW 46 usage_01709.pdb 1 ---RGIIAALGP---DGKPSRIVVIYTTGSQA----TMDERNRQIAEIGASLIKH- 45 i l #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################