################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:01:15 2021 # Report_file: c_0726_4.html ################################################################################################ #==================================== # Aligned_structures: 5 # 1: usage_00057.pdb # 2: usage_00118.pdb # 3: usage_00197.pdb # 4: usage_00245.pdb # 5: usage_00252.pdb # # Length: 85 # Identity: 21/ 85 ( 24.7%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 73/ 85 ( 85.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 12/ 85 ( 14.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00057.pdb 1 -TVHTVDGIDIVPMYRPKDA--PKKLGYPGVAPFTRGTTVR---NGDMDAWDVRALHEDP 54 usage_00118.pdb 1 -IWHTPEGISIKPLYSKRDTMDL-PEELPGVKPFTRGPYPTMYT---FRPWTIRQYAGFS 55 usage_00197.pdb 1 LTVHTVDGIDIVPMYRPKDA--PKKLGYPGVAPFTRGTTVR---NGDMDAWDVRALHEDP 55 usage_00245.pdb 1 LTVHTVDGIDIVPMYRPKDA--PKKLGYPGVAPFTRGTTVR---NGDMDAWDVRALHEDP 55 usage_00252.pdb 1 LTVHTVDGIDIVPMYRPKDA--PKKLGYPGVAPFTRGTTVR---NGDMDAWDVRALHEDP 55 tvHTvdGIdIvPmYrpkDa p klgyPGVaPFTRGttvr mdaWdvRalhedp usage_00057.pdb 55 DEKFTRKAILEGLERGVTSLLLR-- 77 usage_00118.pdb 56 TVEESNKFYKDNIKAGQQGLSVAF- 79 usage_00197.pdb 56 DEKFTRKAILEGLERGVTSLLLRVD 80 usage_00245.pdb 56 DEKFTRKAILEGLERGVTSLLLRVD 80 usage_00252.pdb 56 DEKFTRKAILEGLERGVTSLLLRVD 80 dekftrKaileglerGvtsLllr #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################