################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:07:10 2021 # Report_file: c_0114_2.html ################################################################################################ #==================================== # Aligned_structures: 14 # 1: usage_00019.pdb # 2: usage_00020.pdb # 3: usage_00021.pdb # 4: usage_00023.pdb # 5: usage_00030.pdb # 6: usage_00033.pdb # 7: usage_00055.pdb # 8: usage_00068.pdb # 9: usage_00070.pdb # 10: usage_00099.pdb # 11: usage_00100.pdb # 12: usage_00102.pdb # 13: usage_00123.pdb # 14: usage_00126.pdb # # Length: 121 # Identity: 19/121 ( 15.7%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 27/121 ( 22.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 20/121 ( 16.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00019.pdb 1 --AVVTQESALTTSPGETVTLTCRSSTGAVTT---SN-YANWVQEKPRHLFTGLIGGTNN 54 usage_00020.pdb 1 --AVVTQESALTTSPGETVTLTCRSSTGAVTT---SN-YANWVQEKPRHLFTGLIGGTNN 54 usage_00021.pdb 1 --AVVTQESALTTSPGETVTLTCRSSTGAVTT---SN-YANWVQEKPDHLFTGLIGGTNN 54 usage_00023.pdb 1 --QMTQSPSSLSASVGDRVTITCRASQS-ISS------YLNWYQQKPGKAPKLLIYAASS 51 usage_00030.pdb 1 ---VLTQPPSVSVAPGQTARITCGGT-N--IG---DI-SVHWYQQRPGQAPLVVVYDDSD 50 usage_00033.pdb 1 Q-AVVTQESALTTSPGETVTLTCRSSTGTVTT---SN-YANWVQEKPDHLFTGLIGATNN 55 usage_00055.pdb 1 --AVVTQESALTTSPGETVTLTCRSSSGAITT---SH-YANWIQEKPDHLFTGLISGTNN 54 usage_00068.pdb 1 --VMSQSPSSLAVSAGEKVTMSCKSSQS-LLNSRTRKNYLAWYQQKPGQSPKVLIYWAST 57 usage_00070.pdb 1 --AVVTQESALTTSPGETVTLTCRSSTGAVTT---RN-YANWVQEKPDHFFTGLIGDTNN 54 usage_00099.pdb 1 N-FMLTQSHSVSESPGKTVTISCTRSSG-SIA---SN-YVQWYQQRPGSSPTTVIYEDNQ 54 usage_00100.pdb 1 --FMLTQSHSVSESPGKTVTISCTRSSG-SIA---SN-YVQWYQQRPGSSPTTVIYEDNQ 53 usage_00102.pdb 1 -IQMTQSPSSLSASLGERVSLTCRASQD-IGS------SLNWLQQEPDGTIKRLIYATSS 52 usage_00123.pdb 1 --AVVTQESALTTSPGETVTLTCRSSTGAVTT---SN-YANWVQEKPDHLFTGLIGGTNN 54 usage_00126.pdb 1 --AVVTQESALTTSPGETVTLTCRSSTGAVTT---SN-YASWVQEKPDHLFTGLIGGTNN 54 s G v C s W Q P i usage_00019.pdb 55 RAPGVPARFSGSLIG--NKAALTITGAQTEDEAIYFCALWYS--NHLVFG-GGTKLTVL- 108 usage_00020.pdb 55 RAPGVPARFSGSLIG--NKAALTITGAQTEDEAIYFCALWYS--NHLVFG-GGTKLTVL- 108 usage_00021.pdb 55 RAPGVPARFSGSLIG--NKAALTITGAQTEDEAIYFCALWYS--NHLVFG-GGTKLTVL- 108 usage_00023.pdb 52 LQSGVPSRFSGSGSG--TDFTLTISSLQPEDFATYYCQQSYS--TPNTFG-QGTKVEI-- 104 usage_00030.pdb 51 RPSGIPERFSGSNSG--NTATLTISRVEAGDEADYYCQVWDDSINAYVFG-TGTKVTVLR 107 usage_00033.pdb 56 RAAGVPVRFSGSLIG--GKAALTITGAQTEDEAIYFCALWYS--GHWVFG-GGTKLTVL- 109 usage_00055.pdb 55 RAPGVPARFSGSLIG--DKAALTITGAQTEDEAIYICALWFS--NQFIFG-SGTKVTV-- 107 usage_00068.pdb 58 RESGVPDRFTGRGSG--TDFTLTISSVQAEDQAVYYCKQAYI--PPLTFG-AGTKLELKR 112 usage_00070.pdb 55 RAPGVPARFSGSLIG--HKAALTITGAQTEDESVYFCALWYS--NHWVFG-GGTKLTV-- 107 usage_00099.pdb 55 RPSGVPDRFSGSIDSSSNSASLTISGLKTEDEADYYCQSYDS--SNHVVFGGGTKLTVL- 111 usage_00100.pdb 54 RPSGVPDRFSGSIDSSSNSASLTISGLKTEDEADYYCQSYDS--SNHVVFGGGTKLTV-- 109 usage_00102.pdb 53 LDSGVPKRFSGSRSG--SDYSLTISRLESEDFVDYYCLQYAT--SPYTFG-GGTKLEI-- 105 usage_00123.pdb 55 RAPGVPARFSGSLIG--NKAALTITGAQTEDEAIYFCALWYS--NHLVFG-GGTKLTVLE 109 usage_00126.pdb 55 RAPGVPARFSGSLIG--DKAALTITGAQTEDEAIYFCALWYS--NHWVFG-GGTKLTVL- 108 GvP RFsGs LTI eD Y C GTK usage_00019.pdb - usage_00020.pdb - usage_00021.pdb - usage_00023.pdb - usage_00030.pdb 108 T 108 usage_00033.pdb - usage_00055.pdb - usage_00068.pdb 113 A 113 usage_00070.pdb - usage_00099.pdb - usage_00100.pdb - usage_00102.pdb - usage_00123.pdb - usage_00126.pdb - #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################