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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Wed Jan 20 23:00:57 2021
# Report_file: c_0131_9.html
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#====================================
# Aligned_structures: 4
#   1: usage_00028.pdb
#   2: usage_00029.pdb
#   3: usage_00069.pdb
#   4: usage_00112.pdb
#
# Length:        203
# Identity:       48/203 ( 23.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    162/203 ( 79.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           41/203 ( 20.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00028.pdb         1  ---AVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVIGDI----DSGIYVKPDLPE   53
usage_00029.pdb         1  ---AVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVIGDI----DSGIYVKPDLPE   53
usage_00069.pdb         1  ---YVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVMGD-QRNGEGAMYVPDDLLP   56
usage_00112.pdb         1  QLRAVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVIG-------------PDLPE   47
                              aVtTGYmgtaSqikilaewltaLrkdhPdLlimvDPViG             pDLpe

usage_00028.pdb        54  AYRQYLLPLAQGITPNIFELEILTGKNCRDLDSAIAAAKSLLS-DTLKWVVV-TS-----  106
usage_00029.pdb        54  AYRQYLLPLAQGITPNIFELEILTGKNCRDLDSAIAAAKSLLS-DTLKWVVV-TS-----  106
usage_00069.pdb        57  VYREKVVPVADIITPNQFEAELLTGRKIHSQEEALEVMDMLHSM-GPDTVVITSSNLLSP  115
usage_00112.pdb        48  AYRQYLLPLAQGITPNIFELEILTGKNCRDLDSAIAAAKSLLS-DTLKWVVV-TS--ASG  103
                           aYRqyllPlAqgITPNiFElEiLTGkncrdldsAiaaaksLlS  tlkwVVv tS     

usage_00028.pdb       107  ---QEMQVVVVTA------DSVNVISHSRVKTDLKGTGDLFCAQLISGLLKG--KALTDA  155
usage_00029.pdb       107  ----EMQVVVVTA------DSVNVISHSRVKTDLKGTGDLFCAQLISGLLKG--KALTDA  154
usage_00069.pdb       116  RGSDYLMALGSQRTRGSVVTQRIRMEMHKVDAVFVGTGDLFAAMLLAWTHKHPN-NLKVA  174
usage_00112.pdb       104  N--QEMQVVVVTA------DSVNVISHSRVKTDLKGTGDLFCAQLISGLLKG--KALTDA  153
                               emqvvvvta      dsvnvishsrVktdlkGTGDLFcAqLisgllKg   aLtdA

usage_00028.pdb       156  VHRAGLRVLEVMRYTQQHE----  174
usage_00029.pdb       155  VHRAGLRVLEVMRYTQQHE----  173
usage_00069.pdb       175  CEKTVSAMHHVLQRTIKCAKAKS  197
usage_00112.pdb       154  VHRAGLRVLEVMRYTQQHE----  172
                           vhraglrvleVmryTqqhe    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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