################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:48:28 2021 # Report_file: c_0112_11.html ################################################################################################ #==================================== # Aligned_structures: 12 # 1: usage_00052.pdb # 2: usage_00071.pdb # 3: usage_00072.pdb # 4: usage_00129.pdb # 5: usage_00130.pdb # 6: usage_00136.pdb # 7: usage_00172.pdb # 8: usage_00188.pdb # 9: usage_00189.pdb # 10: usage_00250.pdb # 11: usage_00255.pdb # 12: usage_00260.pdb # # Length: 111 # Identity: 50/111 ( 45.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 71/111 ( 64.0%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 3/111 ( 2.7%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00052.pdb 1 LVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDS 60 usage_00071.pdb 1 VVMTQSPLSLPVTLGQPASISCKSSQSLLYTDGKTYLYWFLQRPGQSPRRLIYLVSKLDS 60 usage_00072.pdb 1 -VMTQSPLSLPVTLGQPASISCKSSQSLLYTDGKTYLYWFLQRPGQSPRRLIYLVSKLDS 59 usage_00129.pdb 1 IVLTQSPASLAVSLGQPATISCGASKSVRT-SGYSYMDWNQQKPGQPPRRLIYLVSNLES 59 usage_00130.pdb 1 VVMSQTPLTLSVTIGQPASISCKSSQSLLDSDGKTYLNWLLQRPGQSPKRLIYLVSRLDS 60 usage_00136.pdb 1 VVMTQTPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDS 60 usage_00172.pdb 1 -VMTQTPLTLSVTIGQPASIACKSSQSLLDSDGKTYLNWLLQRPGQSPKRLIYLVSKLDS 59 usage_00188.pdb 1 VVMTQSPLSLPVTLGQPASISCRSSQSLVHSDGNTYLNWFQQRPGQSPRRLIYKVSDRDS 60 usage_00189.pdb 1 IVMTQSPLSLPVTLGQPASISCRSSQSLVHSDGNTYLNWFQQRPGQSPRRLIYKVSDRDS 60 usage_00250.pdb 1 LVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDS 60 usage_00255.pdb 1 VVMTQSPLSLPVTLGQPASISCKSSQSLLYTDGKTYLYWFLQRPGQSPRRLIYLVSKLDS 60 usage_00260.pdb 1 VVMSQTPLTLSVTIGQPASISCKSSQSLLDSDGKTYLNWLLQRPGQSPKRLIYLVSRLDS 60 Vm Q Pl L Vt GQPAsIsC sSqSl G tYl W QrPGQsP RLIY VS dS usage_00052.pdb 61 GDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLEL- 110 usage_00071.pdb 61 GVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCLQSTHFPHTFGGGTKVEI- 110 usage_00072.pdb 60 GVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCLQSTHFPHTFGGGTKVEI- 109 usage_00129.pdb 60 GVPARFSGSGSGTDFTLNIHPVEEEDAATYYCSHIRELPRSSGGGTKLEI- 109 usage_00130.pdb 61 GVPDRFTGSGSGTDFTLKISRVEAEDLGIYFCWQGSHFPQTFGGGTKLEI- 110 usage_00136.pdb 61 GVPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGTHFPYTFGGGTKLEI- 110 usage_00172.pdb 60 GVPDRFTGSGSGTDFTLKISRVEAEDLGVYYCWQGTHFPYTFGGGTKLEI- 109 usage_00188.pdb 61 GVPDRFSGSGSGTDFTLKISRVEAEDVGLYYCMQGTHWPPYTFGQGTKVEI 111 usage_00189.pdb 61 GVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQGTHWPPYTFGQGTKVEI 111 usage_00250.pdb 61 GDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLEL- 110 usage_00255.pdb 61 GVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCLQSTHFPHTFGGGTKVEI- 110 usage_00260.pdb 61 GVPDRFTGSGSGTDFTLKISRVEAEDLGIYFCWQGSHFPQTFGGGTKLEI- 110 G PdRF GSGSGTDFTLkIsrVEaED g Y C q h P #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################