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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Thu Jan 21 23:03:28 2021
# Report_file: c_0328_2.html
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#====================================
# Aligned_structures: 7
#   1: usage_00280.pdb
#   2: usage_00540.pdb
#   3: usage_00542.pdb
#   4: usage_00544.pdb
#   5: usage_00622.pdb
#   6: usage_00654.pdb
#   7: usage_00656.pdb
#
# Length:        249
# Identity:        6/249 (  2.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     29/249 ( 11.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          149/249 ( 59.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00280.pdb         1  -TAEINCFMHLLVQLFLWDSKELEQ--LVEFNRKVVIPNLLCYYNL--------RSLNLI   49
usage_00540.pdb         1  --RPRTGKAASTPLLPEVEAYLQLLVV--IFMMNSKRYKEAQKISDDLMQKIS-TQNRRA   55
usage_00542.pdb         1  --RPRTGKAASTPLLPEVEAYLQLLVV--IFMMNSKRYKEAQKISDDLMQKIS-TQNRRA   55
usage_00544.pdb         1  ---DGQATLLNLLLRNYLHYSL--------Y---DQAEKLVSKS-----VFPEQ----A-   36
usage_00622.pdb            ------------------------------------------------------------     
usage_00654.pdb         1  LLPEVEAYLQLLVVIFMMNSKRYK-----EAQKISDDLMQKISTQ----------N-RRA   44
usage_00656.pdb         1  ----------STPLLPEVEAYLQLLVV--IFMMNSKRYKEAQKISDDLMQKIS-TQNRRA   47
                                                                                       

usage_00280.pdb        50  NAKLWFYIYLSHETLARSSEEINS-----DNQ-NIILRSTMMKFLKIASL-KHDNETKAM  102
usage_00540.pdb        56  LDLVAAKCYYYHARVY---E---------FLDKLDVVRSFLHARLRTATL-RHDADGQAT  102
usage_00542.pdb        56  LDLVAAKCYYYHARVY---E---------FLDKLDVVRSFLHARLRTATL-RHDADGQAT  102
usage_00544.pdb        37  NNNEWARYLYYTGRIK---A---------IQLEYSEARRTMTNALRKAPQH-TAVGFKQT   83
usage_00622.pdb         1  -AKLWFYIYLSHETL-ARSS----EEINSDNQ-NIILRSTMMKFLKIASL-KHDNETKAM   52
usage_00654.pdb        45  LDLVAAKCYYYHARVY---E---------FLDKLDVVRSFLHARLRTATL-RHDADGQAT   91
usage_00656.pdb        48  LDLVAAKCYYYHARVY---E---------FLDKLDVVRSFLHARLRTATL-RHDADGQAT   94
                                   y  h                         Rs     L  A l  hd    a 

usage_00280.pdb       103  LINLILRDFLNNG---EVDSASDFIS-KLE--YPHTDVSSSLEARYFFYLSKINAIQLDY  156
usage_00540.pdb       103  LLNLLLRNYLHYS---LY--DQAEKL-VSKS-VFPEQANNNEWARYLYYTGRIKAIQLEY  155
usage_00542.pdb       103  LLNLLLRNYLHYS---LY--DQAEKL-VSKS-VFPEQANNNEWARYLYYTGRIKAIQLEY  155
usage_00544.pdb        84  VHKLLIVVELLLGEIP-D--RLQFRQPSLKRS------LMPYFLLTQAVRTG--------  126
usage_00622.pdb        53  LINLILRDFLNNG---EVD-SASDFI-SKLE-YPHTDVSSSLEARYFFYLSKINAIQLDY  106
usage_00654.pdb        92  LLNLLLRNYLHYS---LYDQAEKLVS-KSV--FPE-QANNNEWARYLYYTGRIKAIQLEY  144
usage_00656.pdb        95  LLNLLLRNYLHYS---LY--DQAEKL-VSKS-VFPEQANNNEWARYLYYTGRIKAIQLEY  147
                           l nL lr  L                                 ary  y           

usage_00280.pdb       157  STANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMG---------------------  195
usage_00540.pdb       156  SEARRTMTNALRKAPQH-TAVGFKQTVHKLLIVVELLLG---------------------  193
usage_00542.pdb       156  SEARRTMTNALRKAPQH-TAVGFKQTVHKLLIVVELLLG---------------------  193
usage_00544.pdb       127  -NLAKFNQVLDQFGE------KFQADG---------------------------------  146
usage_00622.pdb       107  STANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYY  166
usage_00654.pdb       145  SEARRTMTNALRKAPQH-TAVGFKQTVHKLLIVVELLLG---------------------  182
usage_00656.pdb       148  SEARRTMTNALRKAPQH-TAVGFKQTVHKLLIVVELLLG---------------------  185
                             a      a rkap      gF q                                   

usage_00280.pdb            ---------     
usage_00540.pdb            ---------     
usage_00542.pdb            ---------     
usage_00544.pdb            ---------     
usage_00622.pdb       167  HLTKAVKLG  175
usage_00654.pdb            ---------     
usage_00656.pdb            ---------     
                                    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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