################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 22:58:24 2021 # Report_file: c_1111_51.html ################################################################################################ #==================================== # Aligned_structures: 3 # 1: usage_00038.pdb # 2: usage_00110.pdb # 3: usage_00779.pdb # # Length: 206 # Identity: 28/206 ( 13.6%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 77/206 ( 37.4%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 129/206 ( 62.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00038.pdb 1 PTWKMIHSVLTLFVAVPSLMTAFTVAASLEFAGRLRGGRGLFGWIRALPWDNPAFVAPVL 60 usage_00110.pdb 1 ---------------VPSLMTAFTVAASLEFAGRLRGGRGLFGWIRALPWDNPAFVAPVL 45 usage_00779.pdb ------------------------------------------------------------ usage_00038.pdb 61 GLLGFIPGGAGGIVNASFTLDYVVHNTAWVPGHFHLQVASLVTLTAMGSLYWLLPNLTG- 119 usage_00110.pdb 46 GLLGFIPGGAGGIVNASFTLDYVVHNTAWVPGHFHLQVASLVTLTAMGSLYWLLPNLTG- 104 usage_00779.pdb 1 --PGGAGGIVNASF----TLDYVVHNTAWVPGHFHLQVA----SLVTLTAMGSLYWLLPN 50 lGfipGgaggiv TLDYVVHNTAWVPGHFHLQVA ltamgslywlLpnLtg usage_00038.pdb 120 ---KPI----SDAQRRLGLAVVWLWFLGMMIMAVGLHWA--------------------- 151 usage_00110.pdb 105 ---KPI----SDAQRRLGLAVVWLWFLGMMIMAVG------------------------- 132 usage_00779.pdb 51 LTGKPISDAQRRLGLAVVWLWFLGMMIMAVGLHWAGLLNVPRRAYIAQVPDAYPHAAVPM 110 KPI sdaqrrlglavvwlwflgmmimavg usage_00038.pdb 152 -------------GLLN--------- 155 usage_00110.pdb -------------------------- usage_00779.pdb 111 VFNVLAGIVLLVA-LLLFIYGLFSVL 135 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################