################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:03:47 2021 # Report_file: c_1193_75.html ################################################################################################ #==================================== # Aligned_structures: 13 # 1: usage_00056.pdb # 2: usage_00083.pdb # 3: usage_00381.pdb # 4: usage_00412.pdb # 5: usage_00423.pdb # 6: usage_00510.pdb # 7: usage_00619.pdb # 8: usage_01072.pdb # 9: usage_01111.pdb # 10: usage_01213.pdb # 11: usage_01278.pdb # 12: usage_01295.pdb # 13: usage_01350.pdb # # Length: 29 # Identity: 4/ 29 ( 13.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 6/ 29 ( 20.7%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 13/ 29 ( 44.8%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00056.pdb 1 FGEVWMGTWNG--------TTRVAIKTL- 20 usage_00083.pdb 1 FGEVWMGTWNG--------TTRVAIKTL- 20 usage_00381.pdb 1 -GEVWMGTWNG--------TTRVAIKTL- 19 usage_00412.pdb 1 -GLVHLGYWLN--------KDKVAIKTI- 19 usage_00423.pdb 1 FGLVHLGYWLN--------KDKVAIKTI- 20 usage_00510.pdb 1 -GEVWMGTWNG--------TTRVAIKTLK 20 usage_00619.pdb 1 --EVWMGTWNG--------TTRVAIKT-- 17 usage_01072.pdb 1 -GVVKYGKWRG--------QYDVAIKMI- 19 usage_01111.pdb 1 FGEVYEGTAV-DILGVGSGEIKVAVKTL- 27 usage_01213.pdb 1 -GEVWMGTWNG--------TTRVAIKTL- 19 usage_01278.pdb 1 --EVWMGTWNG--------TTRVAIKT-- 17 usage_01295.pdb 1 FGEVWMGTWNG--------TTRVAIKTL- 20 usage_01350.pdb 1 -GQVYRATWQ---------GQEVAVKA-- 17 V g w VA K #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################