################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:09:15 2021 # Report_file: c_0863_133.html ################################################################################################ #==================================== # Aligned_structures: 4 # 1: usage_00056.pdb # 2: usage_00057.pdb # 3: usage_01190.pdb # 4: usage_01318.pdb # # Length: 87 # Identity: 1/ 87 ( 1.1%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 12/ 87 ( 13.8%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 40/ 87 ( 46.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00056.pdb 1 ---T-IDNAADTLMSHYD-----QVVGAS--LGKPVKISETGWPSA---GGNFQSSV-AS 45 usage_00057.pdb 1 ---T-IDNAADTLMSHYD-----QVVGAS--LGKPVKISATGWPSA---GGNFQSSV-AS 45 usage_01190.pdb 1 ------------FPDNLPDIWYHHFGYVKLELGYSVVIGAFGGKYG---HG-------G- 37 usage_01318.pdb 1 SLENRMRFPLQVAQAVRE-----VVP------RELPLF--VRVSATDWGEG------GW- 40 v g v i g G usage_00056.pdb 46 VENENKYLHDVLCRVKQRNIDLLYFS- 71 usage_00057.pdb 46 VENENKYLHDVLCRVKQRNIDLLYFS- 71 usage_01190.pdb 38 DPRDVIWQNKLVDWMIENKFCDFFYWS 64 usage_01318.pdb 41 ---SLEDTLAFARRLKELGVDLLDCS- 63 r k dll s #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################