################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:48:08 2021 # Report_file: c_0336_4.html ################################################################################################ #==================================== # Aligned_structures: 8 # 1: usage_00001.pdb # 2: usage_00003.pdb # 3: usage_00005.pdb # 4: usage_00040.pdb # 5: usage_00055.pdb # 6: usage_00056.pdb # 7: usage_00074.pdb # 8: usage_00078.pdb # # Length: 82 # Identity: 13/ 82 ( 15.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 29/ 82 ( 35.4%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 10/ 82 ( 12.2%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 AMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVN----NEWATSVGEGGSFGELALIY 56 usage_00003.pdb 1 AMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVN----NEWATSVGEGGSFGELALIY 56 usage_00005.pdb 1 --FEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMY 58 usage_00040.pdb 1 ---PLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPG-IVGEIALLR 56 usage_00055.pdb 1 AMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVN----NEWATSVGEGGSFGELALIY 56 usage_00056.pdb 1 AMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVN----NEWATSVGEGGSFGELALIY 56 usage_00074.pdb 1 --QFFVFKGGDLVIKQGEKGSYFFIINSGKFDVYVN----DKKVKSMGKGSSFGEAALIH 54 usage_00078.pdb 1 --FPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVN----NEWATSVGEGGSFGELALIY 54 G vi QG g F I G dvyv g sfGE AL usage_00001.pdb 57 GTPRAATVKAKTNVKLWGID-- 76 usage_00003.pdb 57 GTPRAATVKAKTNVKLWGID-- 76 usage_00005.pdb 59 NTPKAATITATSPGALWGLDR- 79 usage_00040.pdb 57 DSPRSATVTTIEPLTGWTGG-- 76 usage_00055.pdb 57 GTPRAATVKAKTNVKLWGID-- 76 usage_00056.pdb 57 GTPRAATVKAKTNVKLWGID-- 76 usage_00074.pdb 55 NTQRSATIMAETDGTLWGVQ-- 74 usage_00078.pdb 55 GTPRAATVKAKTNVKLWGIDRD 76 tpr AT a lWg #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################