################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:11:31 2021 # Report_file: c_0398_43.html ################################################################################################ #==================================== # Aligned_structures: 12 # 1: usage_00075.pdb # 2: usage_00077.pdb # 3: usage_00493.pdb # 4: usage_00494.pdb # 5: usage_00523.pdb # 6: usage_00524.pdb # 7: usage_00538.pdb # 8: usage_00539.pdb # 9: usage_00875.pdb # 10: usage_00876.pdb # 11: usage_00877.pdb # 12: usage_00878.pdb # # Length: 193 # Identity: 80/193 ( 41.5%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 80/193 ( 41.5%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 113/193 ( 58.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00075.pdb 1 ---------------------DWSAYFMGQAVAATDTIETDTLQS--------DKSYLAA 31 usage_00077.pdb 1 -----------------------SAYFMGQAVAATDTIETDTLQSDT-----PDKSYLAA 32 usage_00493.pdb 1 --------------------------------------------------------YLAA 4 usage_00494.pdb 1 --GTLNDIGIDLRPWAFGQWGDWSAYFMGQAVAATD------------------KSYLAA 40 usage_00523.pdb 1 --------GIDLRPWAFGQWGDWSAYFMGQAVAATDTIETDT----------PDKSYLAA 42 usage_00524.pdb 1 --------------------------------------------------------YLAA 4 usage_00538.pdb 1 -----------------------SAYFMGQAVAATDTIETDTLQ---NDGREPDKSYLAA 34 usage_00539.pdb 1 -----------------------SAYFMGQAVAATDTIETDTLQ---D-GREPDKSYLAA 33 usage_00875.pdb 1 -----------------------SAY-FGQAVAATDTIETDTL---------PDKSYLAA 27 usage_00876.pdb 1 --------------------------------------------------------YLAA 4 usage_00877.pdb 1 DW---------------------SAY-FGQAVAATDTIETDTL---------PDKSYLAA 29 usage_00878.pdb 1 -----------------------SAY-FGQAVAATDTIETDTL----------DKSYLAA 26 YLAA usage_00075.pdb 32 REFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFS 91 usage_00077.pdb 33 REFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFS 92 usage_00493.pdb 5 REFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFS 64 usage_00494.pdb 41 REFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFS 100 usage_00523.pdb 43 REFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFS 102 usage_00524.pdb 5 REFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFS 64 usage_00538.pdb 35 REFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFS 94 usage_00539.pdb 34 REFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFS 93 usage_00875.pdb 28 REFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFS 87 usage_00876.pdb 5 REFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFS 64 usage_00877.pdb 30 REFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFS 89 usage_00878.pdb 27 REFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFS 86 REFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFS usage_00075.pdb 92 EYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPG---------- 141 usage_00077.pdb 93 EYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSG---------------- 136 usage_00493.pdb 65 EYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNLDKTY 124 usage_00494.pdb 101 EYRT---------KDRTHVFGDISTQWA-------------------------------- 119 usage_00523.pdb 103 EYRTDLDELAPEDKDRTHVFGDIST----------------------------------- 127 usage_00524.pdb 65 EYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEV---DKTY 121 usage_00538.pdb 95 EYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHAD------------------- 135 usage_00539.pdb 94 EYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADD------------------ 135 usage_00875.pdb 88 EYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSG---------------- 131 usage_00876.pdb 65 EYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNLDKTY 124 usage_00877.pdb 90 EYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADD------------------ 131 usage_00878.pdb 87 EYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSG---------------- 130 EYRT KDRTHVFGDIST usage_00075.pdb ------------- usage_00077.pdb ------------- usage_00493.pdb 125 TGQLTWLGIEATG 137 usage_00494.pdb ------------- usage_00523.pdb ------------- usage_00524.pdb 122 TGQLTWLGIEATG 134 usage_00538.pdb ------------- usage_00539.pdb ------------- usage_00875.pdb ------------- usage_00876.pdb 125 TGQLTWLGIEATG 137 usage_00877.pdb ------------- usage_00878.pdb ------------- #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################