################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:08:00 2021 # Report_file: c_0206_6.html ################################################################################################ #==================================== # Aligned_structures: 14 # 1: usage_00001.pdb # 2: usage_00002.pdb # 3: usage_00004.pdb # 4: usage_00013.pdb # 5: usage_00018.pdb # 6: usage_00023.pdb # 7: usage_00029.pdb # 8: usage_00036.pdb # 9: usage_00044.pdb # 10: usage_00047.pdb # 11: usage_00054.pdb # 12: usage_00067.pdb # 13: usage_00076.pdb # 14: usage_00077.pdb # # Length: 137 # Identity: 17/137 ( 12.4%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 40/137 ( 29.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 43/137 ( 31.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 QVQLQESGGGLVQAGGSLRLSCEASGN--VDRI-DAMGWFRQAPGKQREFVGYISE-GGI 56 usage_00002.pdb 1 -VQLQESGGGLVQPGGSLRLSCTASGS--ISSI-NAMGWYRQAPGSKREFVAHITN-TGV 55 usage_00004.pdb 1 QVQLVESGGGLVQAGGSLRLSCAASGY--PWTY-IYMGWFRQAPGKEREGVAAMDS-GGG 56 usage_00013.pdb 1 --QLVESGGGLVQAGDSLRLSCAVSGR-----S-NVIGWFRQAPGKEREFVAAISWSTGS 52 usage_00018.pdb 1 -VQLVESGGGSVQAGGSLRLSCAASGYTV--ST-YCMGWFRQAPGKEREGVATIL--GGS 54 usage_00023.pdb 1 ---------GSVQAGGSLRLSCAASGYTV--ST-YCMGWFRQAPGKEREGVATIL--GGS 46 usage_00029.pdb 1 --QLVESGGGLVQAGGSLRLSCAASGS--IVNF-ETMGWYRQAPGKERELVATITN-EGS 54 usage_00036.pdb 1 --QLQESGGGLVQAGGSLRLSCTASRRT---GSNWCMGWFRQLAGKEPELVVALNFDYDM 55 usage_00044.pdb 1 -VQLQESGGGLVQAGGSLRLSCAVSGS--IFRL-STMGWYRQAPGKQREFVASITS-YGD 55 usage_00047.pdb 1 -------QSMFIQEGEDVSMNCTSSSI-----F-NTWLWYKQEPGEGPVLLIALYK-A-G 45 usage_00054.pdb 1 -VQLQESGGGLVQPGGSLRLSCAASGSIF--SG-NVMGWYRQAPGKLREWVAAITP-QGV 55 usage_00067.pdb 1 -VQLVESGGGLVQAGGSLRLSCAASGY--HHPY-IYMGWFRQAPGKEREGVAAMDS-GGG 55 usage_00076.pdb 1 QVQLQESGGGLVQAGGSLRLSCAASGI--WFSI-NNMAWYRQTPGKQRERIAIITS-AGT 56 usage_00077.pdb 1 QVQLQESGGGLVQAGGSLRLSCAASGI--WFSI-NNMAWYRQTPGKQRERIAIITS-AGT 56 g vQ G slrlsC S W rQ pG e usage_00001.pdb 57 -LNYGDFVKGRFTISRDNAKNTVYLQMSNLKSEDTGVYFCAASHWGT------LLI--K- 106 usage_00002.pdb 56 -TEFADSVKGRFTISRDNAKTTVDLQMNSLKPEDTAVYYCAATDWGT------LLI--K- 105 usage_00004.pdb 57 GTLYADSVKGRFTISRDKGKNTVYLQMDSLKPEDTATYYCAAG-GD------ALVA--T- 106 usage_00013.pdb 53 -TYYGRSMKGRCAASRDNAKNTVALQLNSLKPEDTAVYYCAATLDWG-----KTLS--D- 103 usage_00018.pdb 55 -TYYGDSVKGRFTISQDNAKNTVYLQMNSLKPEDTAIYYCAGSTVASTGWCSRLRP--Y- 110 usage_00023.pdb 47 -TYYGDSVKGRFTISQDNAKNTVYLQMNSLKPEDTAIYYCAGSTVASTGWCSRLRP--Y- 102 usage_00029.pdb 55 -SNYADSVKGRFTISGDNAKNTVSLQMNSLKPEDTAVYYCSATFG--------S--R-WP 102 usage_00036.pdb 56 -TYYADSVKGRFTVSRDSGKNTVYLQMNSLKPEDTAIYYCAARSGGF-----SSNR--E- 106 usage_00044.pdb 56 -TNYRDSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNANIE--------A--GTYY 104 usage_00047.pdb 46 -ELTS---NGRLTAQFGITRKDSFLNISASIPSDVGIYFCAGPGG----SSNT------- 90 usage_00054.pdb 56 -PNYADSVKGRFTISRDNAKNMLYLQMSSLKPEDTALYYCNRL---------------P- 98 usage_00067.pdb 56 GTLYADSVKGRFTISRDKGKNTVYLQMDSLKPEDTATYYCAAG-GH------HLRD--H- 105 usage_00076.pdb 57 -TNYVDSVKGRFTISRDDAKNTMYLQMNSLIPEDTAVYYCNLVAD--------Y--D--- 102 usage_00077.pdb 57 -TNYVDSVKGRFTISRDDAKNTMYLQMNSLIPEDTAVYYCNLVAD--------Y--D--- 102 kGR t s d k Lq l peDt Y C usage_00001.pdb 107 --GIEHWGKGTQVTV-- 119 usage_00002.pdb 106 --GIDHWGKGTQVTVS- 119 usage_00004.pdb 107 --RYGRWGQGTQVTVS- 120 usage_00013.pdb 104 --EYDYWGQGTQVTVS- 117 usage_00018.pdb 111 --DYHYRGQGTQVTVS- 124 usage_00023.pdb 103 --DYHYRGQGTQVTVSS 117 usage_00029.pdb 103 YAHSDHWGQGTQVTV-- 117 usage_00036.pdb 107 --LYDGWGQGTQVTVS- 120 usage_00044.pdb 105 GPGRDYWGQGTQVTVS- 120 usage_00047.pdb 91 --GKLIFGQGTTLQVK- 104 usage_00054.pdb 99 --NYRSWGQGTQVTVS- 112 usage_00067.pdb 106 --TYGQWGQGTQVTVS- 119 usage_00076.pdb 103 MGFQSFWGRGTQVTVS- 118 usage_00077.pdb 103 MGFQSFWGRGTQVTVS- 118 G GTqvtV #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################