################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:32:27 2021 # Report_file: c_0435_2.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00002.pdb # 2: usage_00003.pdb # 3: usage_00004.pdb # 4: usage_00156.pdb # 5: usage_00372.pdb # 6: usage_00373.pdb # 7: usage_00374.pdb # 8: usage_00569.pdb # 9: usage_00635.pdb # 10: usage_00673.pdb # 11: usage_00674.pdb # # Length: 134 # Identity: 27/134 ( 20.1%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 27/134 ( 20.1%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 69/134 ( 51.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00002.pdb 1 G----KVYKGHLF----TQAVAIKTLKD-A---EGLREEFRHEAMLRARLQHPNVVCLLG 48 usage_00003.pdb 1 --------KGHLF----TQAVAIKTLKDKA---EPLREEFRHEAMLRARLQHPNVVCLLG 45 usage_00004.pdb 1 -----AECHNL-LP--DKMLVAVKALK--ES-ESA-RQDFQREAELLTMLQHQHIVRFFG 48 usage_00156.pdb 1 -----AECHNL-L---DKMLVAVKAL------SESARQDFQREAELLTMLQHQHIVRFFG 45 usage_00372.pdb 1 -----AECHNL-L---DKMLVAVKALK--E----SARQDFQREAELLTMLQHQHIVRFFG 45 usage_00373.pdb 1 -----AECHNL-L----KMLVAVKALK-------SARQDFQREAELLTMLQHQHIVRFFG 43 usage_00374.pdb 1 -----AECHNL-L---DKMLVAVKALK--E----SARQDFQREAELLTMLQHQHIVRFFG 45 usage_00569.pdb 1 -----AECHNL-LPEQDKMLVAVKALK--E-ASESARQDFQREAELLTMLQHQHIVRFFG 51 usage_00635.pdb 1 ----------------DKMLVAVKALK--E------RQDFQREAELLTMLQHQHIVRFFG 36 usage_00673.pdb 1 GKVFLAECYNL-C----KILVAVKTL---A--SDNARKDFHREAELLTNLQHEHIVKFYG 50 usage_00674.pdb 1 -----AECYNL------KILVAVKTLKD-A--SDNARKDFHREAELLTNLQHEHIVKFYG 46 VA K L R F EA L LQH V G usage_00002.pdb 49 VVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVG-------RTVKSALEPPDFVHLVAQI 101 usage_00003.pdb 46 VVTKDQPLSMIFSYCSHGDLHEFLVMRSPHS----------RTVKSALEPPDFVHLVAQI 95 usage_00004.pdb 49 VCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAK-L--GEDVA--P-GPLGLGQLLAVASQV 102 usage_00156.pdb 46 VCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVA--P-GPLGLGQLLAVASQV 102 usage_00372.pdb 46 VCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVA--P-GPLGLGQLLAVASQV 102 usage_00373.pdb 44 VCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVA--P-GPLGLGQLLAVASQV 100 usage_00374.pdb 46 VCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVA--P-GPLGLGQLLAVASQV 102 usage_00569.pdb 52 VCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVA--P-GPLGLGQLLAVASQV 108 usage_00635.pdb 37 VCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVA--P-GPLGLGQLLAVASQV 93 usage_00673.pdb 51 VCVEGDPLIMVFEYMKHGDLNKFLRAHGPDA----------------------------- 81 usage_00674.pdb 47 VCVEGDPLIMVFEYMKHGDLNKFLRAHGPDA----------------------------- 77 V PL M F Y HGDL FL P usage_00002.pdb 102 AAGME---YLSSHH 112 usage_00003.pdb 96 AAGME---YLSSHH 106 usage_00004.pdb 103 AAGMV---YLAGLH 113 usage_00156.pdb 103 AAGMV---YLAGLH 113 usage_00372.pdb 103 AAGMV---YLAGLH 113 usage_00373.pdb 101 AAGMV---YLAGLH 111 usage_00374.pdb 103 AAGMV---YLAGLH 113 usage_00569.pdb 109 AAGMV---YLAGLH 119 usage_00635.pdb 94 AAGMV---YLAGLH 104 usage_00673.pdb 82 ----VL-------- 83 usage_00674.pdb 78 ----VLMA------ 81 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################