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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Thu Jan 21 01:28:17 2021
# Report_file: c_1340_16.html
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#====================================
# Aligned_structures: 15
#   1: usage_00014.pdb
#   2: usage_00015.pdb
#   3: usage_00016.pdb
#   4: usage_00021.pdb
#   5: usage_00022.pdb
#   6: usage_00224.pdb
#   7: usage_00236.pdb
#   8: usage_00254.pdb
#   9: usage_00255.pdb
#  10: usage_00346.pdb
#  11: usage_00411.pdb
#  12: usage_00412.pdb
#  13: usage_00413.pdb
#  14: usage_00426.pdb
#  15: usage_00427.pdb
#
# Length:         38
# Identity:        0/ 38 (  0.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:      3/ 38 (  7.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           16/ 38 ( 42.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00014.pdb         1  -SADFRKFFAKA----K-HIVIISGAGV---SAES--G   27
usage_00015.pdb         1  -SADFRKFFAKA----K-HIVIISGAGV---SAES--G   27
usage_00016.pdb         1  -SADFRKFFAKA----K-HIVIISGAGV---SAES--G   27
usage_00021.pdb         1  ---DFRKFFAKA----K-HIVIISGAGV---SAES--G   25
usage_00022.pdb         1  SMADFRKFFAKA----K-HIVIISGAGV---SAES--G   28
usage_00224.pdb         1  SMADFRKFFAKA----K-HIVIISGAGV---SAES--G   28
usage_00236.pdb         1  -SDFRKLFSGLE----DIRVLRTRNLPDVIPIYPPIG-   32
usage_00254.pdb         1  SMADFRKFFAKA----K-HIVIISGAGV---SAES--G   28
usage_00255.pdb         1  -MADFRKFFAKA----K-HIVIISGAGV---SAES--G   27
usage_00346.pdb         1  ----VWRILKLFKAFDI-PLTIFAVAMA---AQR---H   27
usage_00411.pdb         1  -MADFRKFFAKA----K-HIVIISGAGV---SAES--G   27
usage_00412.pdb         1  SMADFRKFFAKA----K-HIVIISGAGV---SAES--G   28
usage_00413.pdb         1  SMADFRKFFAKA----K-HIVIISGAGV---SAES--G   28
usage_00426.pdb         1  -MADFRKFFAKA----K-HIVIISGAGV---SAES--G   27
usage_00427.pdb         1  SMADFRKFFAKA----K-HIVIISGAGV---SAES--G   28
                                  f             i   a            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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