################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:36:02 2021 # Report_file: c_0406_36.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00008.pdb # 2: usage_00224.pdb # 3: usage_00252.pdb # 4: usage_00308.pdb # 5: usage_00359.pdb # 6: usage_00360.pdb # 7: usage_00386.pdb # 8: usage_00387.pdb # 9: usage_00405.pdb # 10: usage_00406.pdb # 11: usage_00468.pdb # # Length: 107 # Identity: 33/107 ( 30.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 44/107 ( 41.1%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 29/107 ( 27.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00008.pdb 1 -----VAATPTSLLISWDAG--YWFIDYYRITYGETGGNS-PVQEFTVPGYSSTATISGL 52 usage_00224.pdb 1 -----IASTPTSLLISWEPP--AVSVRYYRITYGETGGNS-PVQEFTVPGSKSTATINNI 52 usage_00252.pdb 1 RDLEVVAATPTSLLISWPPP--SHGYGYYRITYGETGGNS-PVQEFTVPPGKGTATISGL 57 usage_00308.pdb 1 -----VAATPTSLLISWDAYSSSYYVYYYRITYGETGGNS-PVQEFTVPGSKSTATISGL 54 usage_00359.pdb 1 -----VAATPTSLLISWDSG--RGSYQYYRITYGETGGNS-PVQEFTVPGPVHTATISGL 52 usage_00360.pdb 1 -----VAATPTSLLISWEHD--YPYRRYYRITYGETGGNS-PVQEFTVPKDVDTATISGL 52 usage_00386.pdb 1 -----VAATPTSLLISWDAP--AVTVVHYVITYGETGGNS-PVQEFTVPGSKSTATISGL 52 usage_00387.pdb 1 -----VAATPTSLLISWDAP--AVTVVHYVITYGETGGNS-PVQEFTVPGSKSTATISGL 52 usage_00405.pdb 1 -----VAVTPTSALISWDAP--AVTIRYIRLTYGETGGNS-PVQEITLPGSKSTYTISGL 52 usage_00406.pdb 1 -----VAVTPTSALISWDAP--AVTIRYIRLTYGETGGNS-PVQEITLPGSKSTYTISGL 52 usage_00468.pdb 1 -----VAATPTSLLISWDAP--AVTVDHYVITYGETGGSPWSWQEFEVPGSKSTATISGL 53 vA TPTS LISW TYGETGGns pvQE t P T TIsgl usage_00008.pdb 53 SPGVDYTITVYAYYD-N---------------Y-GWSPISINYRT-- 80 usage_00224.pdb 53 KPGADYTITLYAVTG-R---G------DS--PA-SSKPVSINYKT-- 84 usage_00252.pdb 58 KPGVDYTITVYAVEY-P----------YK-HSGYYHRPISINYRT-- 90 usage_00308.pdb 55 KPGVDYTITVYAGHY-L--Y------------GLLSSPISINYRT-- 84 usage_00359.pdb 53 KPGVDYTITVYAVTD-HKP-H-ADGPH----TY-HESPISINYRTEI 91 usage_00360.pdb 53 KPGVDYTITVYAVTS-S----------YK-YDM-QYSPISINYR--- 83 usage_00386.pdb 53 KPGVDYTITVYTMYY-----SYS-D---L--YS-YSSPISINYRT-- 85 usage_00387.pdb 53 KPGVDYTITVYTMYY-----SYS-D---L--YS-YSSPISINYRT-- 85 usage_00405.pdb 53 KPGTDYTVTLYSVTG-R---G----------PA-SSKPASINFRTEI 84 usage_00406.pdb 53 KPGTDYTVTLYSVTG-R---G-D-S------PA-SSKPASINFRTEI 86 usage_00468.pdb 54 KPGVDYTITVYASSFDW-TI--------FP-NY-YSSPISINYR--- 86 kPG DYT T Y P SIN r #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################