################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:46:04 2021 # Report_file: c_0056_3.html ################################################################################################ #==================================== # Aligned_structures: 8 # 1: usage_00001.pdb # 2: usage_00003.pdb # 3: usage_00004.pdb # 4: usage_00005.pdb # 5: usage_00006.pdb # 6: usage_00010.pdb # 7: usage_00013.pdb # 8: usage_00014.pdb # # Length: 189 # Identity: 42/189 ( 22.2%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 51/189 ( 27.0%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 31/189 ( 16.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 -----IGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEEDKIELAKSFMEKAKEK 55 usage_00003.pdb 1 -----IGLIRHLLDKVDNLIIGGGLAYTFVKALGHEIGLSLCEDDKIELAKEF-QLAKEK 54 usage_00004.pdb 1 -----------LLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLDLAKDLLGRAEAL 49 usage_00005.pdb 1 -----IGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLDLAKDLLGRAEAL 55 usage_00006.pdb 1 -VSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDKIDLAKELVEKAKEK 59 usage_00010.pdb 1 KVSDKINVIKNLVNIADKIIIGGGMAYTFLKAQGKEIGISLLEEDKIDFAKDLLEKHG-D 59 usage_00013.pdb 1 KVSGKLQALTNLLPKVDKLIIGGG-AFTFLKALGYDIGNSLLEEELLEEANKILTKGKNL 59 usage_00014.pdb 1 KVSGKLQALTNLLPKVDKLIIGGG-AFTFLKALGYDIGNSLLEEELLEEANKILTKGKNL 59 L D IGG a TF KAlG G Sl Ee A usage_00001.pdb 56 GVRFYMPVDVVVADRFANDANTKVVPID-AIPADWSALDIGPKTRELYRDVIRESKLVVW 114 usage_00003.pdb 55 GVNFY-PVDVVITEEFSETATTKIVGID-SIPSNWEGVDIGPKTREIYADVIKNSKLVVW 112 usage_00004.pdb 50 GVRVYLPEDVVAAERIEAGVETRVFPAR-AIPVPYMGLDIGPKTREAFARALEGARTVFW 108 usage_00005.pdb 56 GVRVYLPEDVVAAERIEAGVETRVFPAR-AIPVPYMGLDIGPKTREAFARALEGARTVFW 114 usage_00006.pdb 60 GVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFKQKLSDAKTVVW 119 usage_00010.pdb 60 --KIVLPVDTKVAKEFSNDAKITVVPSD-SIPADQEGMDIGPNTVKLFADELEGAHTVVW 116 usage_00013.pdb 60 GVKIYLPVDVVAAPACSQDVP-KFVPAQ-EIPNGW-GLDIGPASVRLFKEVISDAQTIWW 116 usage_00014.pdb 60 GVKIYLPVDVVAAPACSQDVP-KFVPAQ-EIPNGW-GLDIGPASVRLFKEVISDAQTIWW 116 P D v a IP g DIGP W usage_00001.pdb 115 NGPMGVFEMDAFAHGTKAIAEALAEA--LDTYSVIGGGDSAAAVEKFGLADKMDHISTGG 172 usage_00003.pdb 113 NGP-GVF-ETPFAEGTKAVGQALADA--EGTYSVIGGGDSAAAVEKFGA-DKSHIST-GG 166 usage_00004.pdb 109 NGPMGVFEVPPFDEGTLAVGQAIAAL--EGAFTVVGGGDSVAAVNRLGLKERFGHVSTGG 166 usage_00005.pdb 115 NGPMGVFEVPPFDEGTLAVGQAIAAL--EGAFTVVGGGDSVAAVNRLGLKERFGHVSTGG 172 usage_00006.pdb 120 NGPMGVFEIDDFAEGTKQVALAIAALTEKGAITVVGGGDSAAAVNKFGLEDKFSHVSTGG 179 usage_00010.pdb 117 NGPMGVFEFSNFAQGTIGVCKAIANL--KDAITIIGGGDSAAAAISLGFENDFTHISTGG 174 usage_00013.pdb 117 NGP-GVFEIDKFSKGSIK-SHYIS-E--GHATSVVGGGDTADVVARAGDADETFIST-GG 170 usage_00014.pdb 117 NGP-GVFEIDKFSKGSIK-SHYIS-E--GHATSVVGGGDTADVVARAGDADETFIST-G- 169 NGP GVF F G v GGGD v G G usage_00001.pdb 173 GASLEFME- 180 usage_00003.pdb 167 GASLEFE-- 173 usage_00004.pdb 167 GASLEFLEK 175 usage_00005.pdb 173 GASLEFLEK 181 usage_00006.pdb 180 GASLEFL-- 186 usage_00010.pdb 175 GASLEYLE- 182 usage_00013.pdb 171 GASLELIE- 178 usage_00014.pdb 170 GASLELIEG 178 GASLE #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################