################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 06:15:25 2021 # Report_file: c_0401_5.html ################################################################################################ #==================================== # Aligned_structures: 45 # 1: usage_00002.pdb # 2: usage_00005.pdb # 3: usage_00012.pdb # 4: usage_00014.pdb # 5: usage_00015.pdb # 6: usage_00016.pdb # 7: usage_00017.pdb # 8: usage_00019.pdb # 9: usage_00020.pdb # 10: usage_00022.pdb # 11: usage_00023.pdb # 12: usage_00024.pdb # 13: usage_00025.pdb # 14: usage_00036.pdb # 15: usage_00045.pdb # 16: usage_00055.pdb # 17: usage_00057.pdb # 18: usage_00066.pdb # 19: usage_00077.pdb # 20: usage_00078.pdb # 21: usage_00079.pdb # 22: usage_00081.pdb # 23: usage_00083.pdb # 24: usage_00102.pdb # 25: usage_00106.pdb # 26: usage_00116.pdb # 27: usage_00117.pdb # 28: usage_00118.pdb # 29: usage_00122.pdb # 30: usage_00149.pdb # 31: usage_00150.pdb # 32: usage_00162.pdb # 33: usage_00163.pdb # 34: usage_00167.pdb # 35: usage_00184.pdb # 36: usage_00189.pdb # 37: usage_00199.pdb # 38: usage_00202.pdb # 39: usage_00213.pdb # 40: usage_00215.pdb # 41: usage_00220.pdb # 42: usage_00221.pdb # 43: usage_00225.pdb # 44: usage_00231.pdb # 45: usage_00232.pdb # # Length: 88 # Identity: 5/ 88 ( 5.7%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 9/ 88 ( 10.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 32/ 88 ( 36.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00002.pdb 1 --IVMTQSPKFMSTSVGDRVTITCKA--SQDV-ST-AVVWYQQKPGQSPKLLIYWASTRH 54 usage_00005.pdb 1 --LVMTQTPKFMSTTVGDRVSITCKA--SQNV-GT-PVAWYQQKPGQSPKLLIYSASNRY 54 usage_00012.pdb 1 --IQMTQSPSSLSASVGDRVTITCRA--SQSI-SS-YLNWYQQKPGKAPKLLIYAASSLQ 54 usage_00014.pdb 1 --IQMTQSPSSLSASVGDRVTITCRA--SQSV-SS-AVAWYQQKPGKAPKLLIYSASSLY 54 usage_00015.pdb 1 --IVITQSPKFMSTSVGDRVSITCKA--SQDV-ST-AVAWFQQKPGQSPKLLIYSASYRY 54 usage_00016.pdb 1 -ELQMIQPEKLLLVTVGKTATLHCTV--TSLL-PVGPVLWFRGVGP-GRELIYNQKE--- 52 usage_00017.pdb 1 ---VMTQSPSTLSASVGDTITITCRA--SQSI-ET-WLAWYQQKPGKAPKLLIYKASTLK 53 usage_00019.pdb 1 --IQMTQSPSSLSASVGDRVTITCRA--SQSV-SS-AVAWYQQKPGKAPKLLIYSASSLY 54 usage_00020.pdb 1 -DIQMTQSPSSLSASVGDRVTITCRA--SQSV-SS-AVAWYQQKPGKAPKLLIYSASSLY 55 usage_00022.pdb 1 -DIQMTQSPSTLSASVGDRVTITCRA--SQSI-SR-WLAWYQQKPGKVPKLLIYKASSLE 55 usage_00023.pdb 1 ----MTQSPSSLSASVGDRVTITCRA--SQSV-SS-AVAWYQQKPGKAPKLLIYSTSSLY 52 usage_00024.pdb 1 --IQMTQSPSSLSASVGDRVTITCRA--SQSV-SS-AVAWYQQKPGKAPKLLIYSASSLY 54 usage_00025.pdb 1 --IQMTQSPSSLSASVGDRVTITCRA--SQSV-SS-AVAWYQQKPGKAPKLLIYSASSLY 54 usage_00036.pdb 1 --IKMTQSPSSMYASLGERVTITCKA--SQDI-NS-YLSWFQQKPGKSPKTLIYRANRLV 54 usage_00045.pdb 1 --IQMTQSPSSLSASLGGKVTITCKA--NQDI-KK-KIAWYQHKPGKGPRLLIYYTSTLK 54 usage_00055.pdb 1 -DIKLTQSPSLLSASVGDRVTLSCKG--SQNI-NN-YLAWYQQKLGEAPKLLIYNTNSLQ 55 usage_00057.pdb 1 --IQMTQSPSSLSASVGDRVTITCRA--SQGI-SS-WLAWYQQKPEKAPKSLIYAASSLQ 54 usage_00066.pdb 1 -EIEMTQSPSSLSASVGDRVTISCRA--SQRI-NT-YLNWYQHKPGKAPKLLIYAASSLQ 55 usage_00077.pdb 1 ---VLTQTPPSASEPVGGTVTIKCQA--SQAI-DE-YLGWYQQKPGQRPKLLMYYASTLA 53 usage_00078.pdb 1 --IQMTQSPSSLSASVGDRVTITCKA--SQDV-SI-GVAWYQRKPGKAPKLLIYSASYRY 54 usage_00079.pdb 1 --IQMTQSPSSLSASVGDRVTITCKA--SQDV-SI-GVAWYQDKPGKAPKLLIYSASYRY 54 usage_00081.pdb 1 --IELTQSPASLSVATGEKVTIRCMT--STDI-DD-DMNWYQQKPGEPPKFLISEGNTLR 54 usage_00083.pdb 1 -NIVMTQSPKSMSMSVGERVTLTCKA--SENV-VT-YVSWYQQKPEQSPKLLIYGASNRY 55 usage_00102.pdb 1 --IQMTQSPSSLSASVGDRVTITCRA--SQAV-SS-AVAWYQQKPGKAPKLLIYSASHRY 54 usage_00106.pdb 1 ---QMTQSPSSLSASVGDRVTITCRT--SGNI-HN-YLTWYQQKPGKAPQLLIYNAKTLA 53 usage_00116.pdb 1 --IQMTQSPSSLSASLGERVSLTCRA--SQEI-SG-YLSWLQQKPDGTIKRLIYAASTLD 54 usage_00117.pdb 1 --IQLTQSPSSLSASVGDRVTITCRA--SQSI-GS-YLNWYQQKPGKAPKLLIYAASTLQ 54 usage_00118.pdb 1 -DIQLTQSPSSLSASLGDKVTITCRA--SQHI-KK-YLNWYQQKPGKAPKLLIYGALNLQ 55 usage_00122.pdb 1 -DIQMTQSPSSLSASVGDRVTITCRA--SQGI-RN-YLAWYQQKPGKAPKLLIYAASTLQ 55 usage_00149.pdb 1 --IQVTQSPSSLSASVGDTVTISCRT--SQSI-ST-WLAWYQVKPGKAPKLLIYTASSLA 54 usage_00150.pdb 1 -DVQITQSPSYLAASPGETITLNCRA--SKSI-SK-YLAWYQEKPGKTNKLLIYSGSTLQ 55 usage_00162.pdb 1 ----MTQSPSSLSASVGDRVTITCSASV-----T--YMYWYQQKPGKAPKLLIYDTSNLA 49 usage_00163.pdb 1 -DIQMTQSPSFVSASVGDRVTITCRA--SQGI-SS-YLAWYQQKPGKAPKLVIYAASTL- 54 usage_00167.pdb 1 --IQMTQSPSSVSASVGDRVTITCQS--SPSVWSN-FLSWYQQKPGKAPKLLIYEASKLT 55 usage_00184.pdb 1 --IQMTQSPSSMSASLGDRVTITCQA--SQDI-GN-NLIWFQQKPGKSPRRMIYYATKLA 54 usage_00189.pdb 1 -DIQMTQSPSSLSASVGDRVTITCGA--SENI-YG-ALNWYQQKPGKAPKLLIYGATNLA 55 usage_00199.pdb 1 FDIVMTQSQKFMSTSVGDRVSITCKA--SQHV-GS-AVAWYQQKPGQSPTLLIHSASNRY 56 usage_00202.pdb 1 ---HVTQSPSSLSVSIGDRVTINCQT--SQGV-GS-DLHWYQHKPGRAPKLLIHHTSSVE 53 usage_00213.pdb 1 --IKMTQSPSSMYASLGERVTITCKA--SQDI-NS-YLSWFQQKPGKSPKTLIYRANRLV 54 usage_00215.pdb 1 --IQMTQSPSSLSASVGDRVTITCQA--SQDI-SN-YLIWYQQKPGKAPKLLIYDASNLE 54 usage_00220.pdb 1 ---VLTQTPPSASEPVGGTVTIKCQA--SQAI-DE-YLGWYQQKPGQRPKLLMYYASTLA 53 usage_00221.pdb 1 ---VLTQTPPSASEPVGGTVTIKCQA--SQAI-DE-YLGWYQQKPGQRPKLLMYYASTLA 53 usage_00225.pdb 1 -DIQMTQSPSSLSASVGDRVTITCQA--SQDI-NN-YLIWYQQKPGQAPKLLIYDASTLE 55 usage_00231.pdb 1 -AIKMTQTPSSVSAAVGGTVTINCQA--SEDI-KR-YLAWYQQKPGQPPKLLIYAASKLA 55 usage_00232.pdb 1 -AIKMTQTPSSVSAAVGGTVTINCQA--SEDI-KR-YLAWYQQKPGQPPKLLIYAASKLA 55 tQ G C W q k usage_00002.pdb 55 IGVPDRFAGSG------SGTDYTLTISS 76 usage_00005.pdb 55 TGVPDRFTGSG------SGTDFTLTISN 76 usage_00012.pdb 55 SGVPSRFSGSG------SGTDFTLT--- 73 usage_00014.pdb 55 SGVPSRFSGSR------SGTDFTLTISS 76 usage_00015.pdb 55 TGVPDRFTGSG------SGTDFTFT--- 73 usage_00016.pdb 53 -GHFPRVTTVSDLTKRN-NMDFSIRISS 78 usage_00017.pdb 54 TGVPSRFSGSG------SGTEFTLTI-- 73 usage_00019.pdb 55 SGVPSRFSGSR------SGTDFTLTISS 76 usage_00020.pdb 56 SGVPSRFSGSR------SGTDFTLTISS 77 usage_00022.pdb 56 SGVPSRFSGSG------SGTEFTLTISS 77 usage_00023.pdb 53 SGVPSRFSGSR------SGTDFTLTISS 74 usage_00024.pdb 55 SGVPSRFSGSR------SGTDFTLTISS 76 usage_00025.pdb 55 SGVPSRFSGSR------SGTDFTLTISS 76 usage_00036.pdb 55 DGVPSRFIGTG------SGQDYSLTISS 76 usage_00045.pdb 55 SGISSRFSGSG------SGRDYSFSISN 76 usage_00055.pdb 56 TGIPSRFSGSG------SGTDYTLT--- 74 usage_00057.pdb 55 SGVPSRFSGSG------SGTDFTLTISS 76 usage_00066.pdb 56 SGVPSRFSGSG------YGTDFTLT--- 74 usage_00077.pdb 54 SGVPSRFKGSG------SGTQFTLTISD 75 usage_00078.pdb 55 TGVPSRFSGSG------SGTDFTLT--- 73 usage_00079.pdb 55 TGVPSRFSGSG------SGTDFTLTISS 76 usage_00081.pdb 55 PGVPSRFSSSG------TGTDFVFT--- 73 usage_00083.pdb 56 TGVPDRFTGSG------SATDFTLTISS 77 usage_00102.pdb 55 TGVPSRFSGSG------SGTDFTLTISS 76 usage_00106.pdb 54 DGVPSRFSGSG------SGTQFTLTISS 75 usage_00116.pdb 55 SGVPKRFSGSR------SGSDYSLTISS 76 usage_00117.pdb 55 SGVPSRFSGSG------SGTDFTLT--- 73 usage_00118.pdb 56 SGVPSRFSGRG------SGTDFTLT--- 74 usage_00122.pdb 56 SGVPSRFSGSG------SGTDFTLT--- 74 usage_00149.pdb 55 SGVPSRFSGSG------SGTDFTLT--- 73 usage_00150.pdb 56 SGIPSRFSGSG------SGTDFTLTISS 77 usage_00162.pdb 50 SGVPSRFSGSG------SGTDYTFT--- 68 usage_00163.pdb 55 -----RFSGSG------SGTEFTLT--- 68 usage_00167.pdb 56 SGVPSRFSGSG------SGTDFTLT--- 74 usage_00184.pdb 55 NGVPSRFSGSR------SGSDYSLTIIS 76 usage_00189.pdb 56 DGVPSRFSGSG------SGTDFTLTISS 77 usage_00199.pdb 57 TGVPDRFTGSG------SGTDFTLTISN 78 usage_00202.pdb 54 DGVPSRFSGSG------FHTSFNLTISD 75 usage_00213.pdb 55 DGVPSRFIGTG------SGQDYSLTISS 76 usage_00215.pdb 55 TGVPSRFSGSG------SGTDFTFT--- 73 usage_00220.pdb 54 SGVPSRFKGSG------SGTQFTLTISD 75 usage_00221.pdb 54 SGVPSRFKGSG------SGTQFTLTISD 75 usage_00225.pdb 56 TGVPSRFSGSG------SGTEFTFTI-- 75 usage_00231.pdb 56 SGVSSRFKGSG------SGTEYTLTISG 77 usage_00232.pdb 56 SGVSSRFKGSG------SGTEYTLTISG 77 Rf #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################