################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 02:09:23 2021 # Report_file: c_0120_9.html ################################################################################################ #==================================== # Aligned_structures: 19 # 1: usage_00002.pdb # 2: usage_00012.pdb # 3: usage_00017.pdb # 4: usage_00019.pdb # 5: usage_00020.pdb # 6: usage_00027.pdb # 7: usage_00034.pdb # 8: usage_00035.pdb # 9: usage_00036.pdb # 10: usage_00037.pdb # 11: usage_00047.pdb # 12: usage_00048.pdb # 13: usage_00053.pdb # 14: usage_00057.pdb # 15: usage_00059.pdb # 16: usage_00068.pdb # 17: usage_00069.pdb # 18: usage_00072.pdb # 19: usage_00101.pdb # # Length: 129 # Identity: 14/129 ( 10.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 22/129 ( 17.1%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 33/129 ( 25.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00002.pdb 1 -IELTQSPSSLSASLGGKVTITCKASQ-DIK-------K-YIGWYQH-KPGKQPRLLIHY 49 usage_00012.pdb 1 -LVMTQTPATLSVTPGDSVSLSCRASQ-SVS-------N-KLHWYQQ-KSHESPRLLIKF 49 usage_00017.pdb 1 --VMSQSPSSLAVSAGEKVTMSCKSSQ-SLLNSRTRK-N-YLAWYQQ-KPGQSPTKLIYW 54 usage_00019.pdb 1 Q-AVVTQEPSVTVSPGGTVILTCGSSTGAVT------SGHYANWFQQ-KPGQAPRALIFE 52 usage_00020.pdb 1 DIVLTQSPAIMSAAPGDKVTMTCSASS-SV--------S-YIHWYQQ-KSGTSPKRWIYD 49 usage_00027.pdb 1 -LVMTQTPLSLPVSLGDQASISCRSSQ-SIVHS-NGN-T-YLEWYLQ-KPGQSPKLLIYK 54 usage_00034.pdb 1 --VMTQSPSSLAMSVGQKVTMSCKSSQ-SLLDSRNQK-N-YLAWYQQ-KPGQSPKLLVYF 54 usage_00035.pdb 1 --VMTQSPSSLAMSVGQKVTMSCKSSQ-SLLDSRNQK-N-YLAWYQQ-KPGQSPKLLVYF 54 usage_00036.pdb 1 --VMTQSPSSLAMSVGQKVTMSCKSSQ-SLLDSRNQK-N-YLAWYQQ-KPGQSPKLLVYF 54 usage_00037.pdb 1 --VMTQSPSSLAMSVGQKVTMSCKSSQ-SLLDSRNQK-N-YLAWYQQ-KPGQSPKLLVYF 54 usage_00047.pdb 1 -IVLTQSPATLSVTPGNSVSLSCRASQ-SIG-------N-NLHWYQQ-KSHESPRLLIKY 49 usage_00048.pdb 1 ---ALTQPSSVSANPGETVKITCSG------------SSGSYGWYQQKSPDSAPVTVIYQ 45 usage_00053.pdb 1 --QMTQSPSSLSASVGDRVTITCRASQ-SIS-------N-YLNWYQQ-KPGKAPKLLIYT 48 usage_00057.pdb 1 --QMTQSPGTLSLSPGERATLSCRASQ-SVS-------S-YLAWYQQ-KPGQAPRLLIYD 48 usage_00059.pdb 1 DIVLTQSPATLSLSPGERATLSCRASQ-SIS-----S-N-ELAWYQQ-KPGQAPRLLIYD 51 usage_00068.pdb 1 DIVLTQSPDITAASLGQKVTITCSASS-SVS---------YMHWYQQ-KSGTSPKPWIFE 49 usage_00069.pdb 1 -ILLTQSPVILSVSPGERVSFSCRASQ-SIG-------T-NIHWYQQ-RTNGSPRLLIKY 49 usage_00072.pdb 1 -IVMTQSPATLSVTPGDRVSLSCRASQ-SIS-------D-YLHWYRQ-KSHESPRLLIKY 49 usage_00101.pdb 1 S-YLLTQPPSVSVSPGQTASISCSGDKL---------DDKYVSWYYQ-RPGQSPVLLMYQ 49 p G C Wy q P usage_00002.pdb 50 TSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIATYYCLQYYN----------LRTFGGG 99 usage_00012.pdb 50 ASQSIPGIPSRFSGSGSGSDFTLSINSVETEDFGIYFCHQTHG----------RPLTFGA 99 usage_00017.pdb 55 ASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYD----------LPTFGAG 104 usage_00019.pdb 53 TDKKYSWTPGRFSGSLLGAKAALTISDAQPEDEAEYYCSLSDV----------DGYLFGG 102 usage_00020.pdb 50 TSKLTSGVPVRFSGSGSGTSYSLTINTMEAEDAATYYCQQWSS----------HPQTFGG 99 usage_00027.pdb 55 VSNRFSGVPDRFSGSGSGTDFTLKINRVEAEDLGVYYCFQGSH----------LPPTFGG 104 usage_00034.pdb 55 ASTRESGVPDRFIGSGSGTDFTLTISSVQAEDLADYFCQQHYS----------TPLTFGA 104 usage_00035.pdb 55 ASTRESGVPDRFIGSGSGTDFTLTISSVQAEDLADYFCQQHYS----------TPLTFGA 104 usage_00036.pdb 55 ASTRESGVPDRFIGSGSGTDFTLTISSVQAEDLADYFCQQHYS----------TPLTFGA 104 usage_00037.pdb 55 ASTRESGVPDRFIGSGSGTDFTLTISSVQAEDLADYFCQQHYS----------TPLTFGA 104 usage_00047.pdb 50 ASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQQSNS----------WPYTFGG 99 usage_00048.pdb 46 SNQRPSDIPSRFSGSKSGSTGTLTITGVQAEDEAVYYCGGWGS----------SVGMFGA 95 usage_00053.pdb 49 ASTLQSGVPSRFSGSASGTDFTLTINSLQPEDFATYSCQQSYN----------SPWTFGQ 98 usage_00057.pdb 49 ASNRATGIPARFSGSGSGTEFTLTISSLQSEDFAVYYCQQYDK----------WPLTFGG 98 usage_00059.pdb 52 TSNRATGVPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQYYS----------YPITFGQ 101 usage_00068.pdb 50 ISKLASGVPARFSGSGSGTSYSLTISSMEAEDAAIYYCQQWNY----------PFTFGGG 99 usage_00069.pdb 50 ASESISGIPSRFSGSGSGTDFTLSINSVESEDIADYYCQQNNN----------WPTTFGA 99 usage_00072.pdb 50 ASQSISGIPSRFSGSGSGSDFTLSINSVEPEDVGVYYCQNGHS----------FPFTFGS 99 usage_00101.pdb 50 DFKRPSGIPERLSGSKSGKTATLTISGTQSLDEGDYYCQAWDASTGVSGGGTKLTVLFGE 109 P Rf GS sG l I eD Y C g usage_00002.pdb 100 -TKLEIKRA 107 usage_00012.pdb 100 GTKLELKRA 108 usage_00017.pdb 105 -TKLELKRS 112 usage_00019.pdb 103 GTQLTVL-- 109 usage_00020.pdb 100 GTKLEILRA 108 usage_00027.pdb 105 GTKLEIKRA 113 usage_00034.pdb 105 GTKLELKRA 113 usage_00035.pdb 105 GTKLELKRA 113 usage_00036.pdb 105 GTKLELKRA 113 usage_00037.pdb 105 GTKLELKRA 113 usage_00047.pdb 100 GTKLEI--- 105 usage_00048.pdb 96 GTTLTVL-- 102 usage_00053.pdb 99 GTKVEIKRT 107 usage_00057.pdb 99 GTKVEIKRT 107 usage_00059.pdb 102 GTKVEIKRT 110 usage_00068.pdb 100 -TKLEI--- 104 usage_00069.pdb 100 GTKLELKRT 108 usage_00072.pdb 100 GTKLEIKRT 108 usage_00101.pdb 110 GTRLTVL-- 116 T #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################