################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:28:37 2021 # Report_file: c_0002_1.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00016.pdb # 2: usage_00017.pdb # 3: usage_00018.pdb # 4: usage_00019.pdb # 5: usage_00020.pdb # 6: usage_00024.pdb # 7: usage_00025.pdb # 8: usage_00026.pdb # 9: usage_00027.pdb # 10: usage_00028.pdb # 11: usage_00029.pdb # # Length: 342 # Identity: 140/342 ( 40.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 186/342 ( 54.4%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 53/342 ( 15.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00016.pdb 1 ---EYYDLGIEERDRTNDQITIDAAEAIKKYGVGVKNATITPNQDRVEEYGLKEQWKSPN 57 usage_00017.pdb 1 ---EYYDLGIEERDRTNDQITIDAAEAIKKYGVGVKNATITPNQDRVEEYGLKEQWKSPN 57 usage_00018.pdb 1 ---EYYDLGIEERDRTNDQITIDAAEAIKKYGVGVKNATITPNQDRVEEYGLKEQWKSPN 57 usage_00019.pdb 1 ---EYYDLGIEERDRTNDQITIDAAEAIKKYGVGVKNATITPNQDRVEEYGLKEQWKSPN 57 usage_00020.pdb 1 ---EYYDLGIEERDRTNDQITIDAAEAIKKYGVGVKNATITPNQDRVEEYGLKEQWKSPN 57 usage_00024.pdb 1 ---EYYDLGLENRDKTEDQVTIDAARAIQKYGVGVKCATITPNAQRVEEYNLKKMWKSPN 57 usage_00025.pdb 1 ---EYYDLGIEERDRTNDQITIDAAEAIKKYGVGVKNATITPNQDRVEEYGLKEQWKSPN 57 usage_00026.pdb 1 ---EYYDLGLENRDKTEDQVTIDAARAIQKYGVGVKCATITPNAQRVEEYNLKKMWKSPN 57 usage_00027.pdb 1 ---EYYDLGLENRDKTEDQVTIDAARAIQKYGVGVKCATITPNAQRVEEYNLKKMWKSPN 57 usage_00028.pdb 1 ---EYYDLGLENRDKTEDQVTIDAARAIQKYGVGVKCATITPNAQRVEEYNLKKMWKSPN 57 usage_00029.pdb 1 IQLVYFDLGIKKRDETDDQITIEAAKAIKKYGVGVKCATITPDAERVKEYNLKKAWKSPN 60 eYyDLG e RD T DQ TIdAA AI KYGVGVK ATITPn RVeEY LK WKSPN usage_00016.pdb 58 ATVRAMLDGTVFRKPIMVKNIKPSVRSWQKPIVVGRHAYGDFYKNAEIFAEAGGKLEIVV 117 usage_00017.pdb 58 ATVRAMLDGTVFRKPIMVKNIKPSVRSWQKPIVVGRHAYGDFYKNAEIFAEAGGKLEIVV 117 usage_00018.pdb 58 ATVRAMLDGTVFRKPIMVKNIKPSVRSWQKPIVVGRHAYGDFYKNAEIFAEAGGKLEIVV 117 usage_00019.pdb 58 ATVRAMLDGTVFRKPIMVKNIKPSVRSWQKPIVVGRHAYGDFYKNAEIFAEAGGKLEIVV 117 usage_00020.pdb 58 ATVRAMLDGTVFRKPIMVKNIKPSVRSWQKPIVVGRHAYGDFYKNAEIFAEAGGKLEIVV 117 usage_00024.pdb 58 GTIRAILDGTVFRAPIVVNSIKPFVKGWKKPISIARHAYGDVYKNVEYYVPSAGKAELVF 117 usage_00025.pdb 58 ATVRAMLDGTVFRKPIMVKNIKPSVRSWQKPIVVGRHAYGDFYKNAEIFAEAGGKLEIVV 117 usage_00026.pdb 58 GTIRAILDGTVFRAPIVVNSIKPFVKGWKKPISIARH------KNVEYYVPSAGKAELVF 111 usage_00027.pdb 58 GTIRAILDGTVFRAPIVVNSIKPFVKGWKKPISIARH------KNVEYYVPSAGKAELVF 111 usage_00028.pdb 58 GTIRAILDGTVFRAPIVVNSIKPFVKGWKKPISIARH-------NVEYYVPSAGKAELVF 110 usage_00029.pdb 61 ATIRAYLDGTVFRKPIMVKNVPPLVKRWKKPIIIGRHAYGDIYNAVEAKVEGPAEVELVV 120 T RA LDGTVFR PI V ikP V W KPI RH n E gk E V usage_00016.pdb 118 TDKNGKETRQTIMEVDEPAIVQGIHNTVASIGHFARACFEYSLDQKIDCWFATKDTISKQ 177 usage_00017.pdb 118 TDKNGKETRQTIMEVDEPAIVQGIHNTVASIGHFARACFEYSLDQKIDCWFATKDTISKQ 177 usage_00018.pdb 118 TDKNGKETRQTIMEVDEPAIVQGIHNTVASIGHFARACFEYSLDQKIDCWFATKDTISKQ 177 usage_00019.pdb 118 TDKNGKETRQTIMEVDEPAIVQGIHNTVASIGHFARACFEYSLDQKIDCWFATKDTISKQ 177 usage_00020.pdb 118 TDKNGKETRQTIMEVDEPAIVQGIHNTVASIGHFARACFEYSLDQKIDCWFATKDTISKQ 177 usage_00024.pdb 118 TSENGEVSRQTIHEFDGPGVIMGMHNTDKSIRSFARACFNYALDMNQDLWFSTKDTISKT 177 usage_00025.pdb 118 TDKNGKETRQTIMEVDEPAIVQGIHNTVASIGHFARACFEYSLDQKIDCWFATKDTISKQ 177 usage_00026.pdb 112 TSENGEVSRQTIHEFDGPGVIMGMHNTDKSIRSFARACFNYALDMNQDLWFSTKDTISKT 171 usage_00027.pdb 112 TSENGEVSRQTIHEFDGPGVIMGMHNTDKSIRSFARACFNYALDMNQDLWFST-----KT 166 usage_00028.pdb 111 TSENGEVSRQTIHEFDGPGVIMGMHNTDKSIRSFARACFNYALDMNQDLWFSTKDTISKT 170 usage_00029.pdb 121 RN-K-ENKTLLVHKFEGNGVVMAMHNLEKSIRSFAQSCINYAISEKVDIWFATKDTISKV 178 t n rqti e d p g HNt SI FAraCf Y ld D WF T K usage_00016.pdb 178 YDQRFKIIFEEIFAQEYKEKFAAAGIEYFYTLIDDVVARMMKTEGGMLWACKNYDGDVMS 237 usage_00017.pdb 178 YDQRFKIIFEEIFAQEYKEKFAAAGIEYFYTLIDDVVARMMKTEGGMLWACKNYDGDVMS 237 usage_00018.pdb 178 YDQRFKIIFEEIFAQEYKEKFAAAGIEYFYTLIDDVVARMMKTEGGMLWACKNYDGDVMS 237 usage_00019.pdb 178 YDQRFKIIFEEIFAQEYKEKFAAAGIEYFYTLIDDVVARMMKTEGGMLWACKNYDGDVMS 237 usage_00020.pdb 178 YDQRFKIIFEEIFAQEYKEKFAAAGIEYFYTLIDDVVARMMKTEGGMLWACKNYDGDVMS 237 usage_00024.pdb 178 YDHRFKDIFQEIYENEYKEKFEAKNLQYFYTLIDDAVARIIRSEGGMVWACKNYDGDVMS 237 usage_00025.pdb 178 YDQRFKIIFEEIFAQEYKEKFAAAGIEYFYTLIDDVVARMMKTEGGMLWACKNYDGDVMS 237 usage_00026.pdb 172 YDHRFKDIFQEIYENEYKEKFEAKNLQYFYTLIDDAVARIIRSEGGMVWACKN-DGDVMS 230 usage_00027.pdb 167 YDHRFKDIFQEIYENEYKEKFEAKNLQYFYTLIDDAVARIIRSEGGMVWACKNYDGDVMS 226 usage_00028.pdb 171 YDHRFKDIFQEIYENEYKEKFEAKNLQYFYTLIDDAVARIIRSEGGMVWACKN---DVMS 227 usage_00029.pdb 179 YHAYFKDIFQEEVDK-RKEELEKAGVNYRYMLIDDAAAQILRSEGGMLWACMNYEGDIMS 237 Yd rFK IF Ei yKEkf a YfYtLIDD vAr EGGM WACkN DvMS usage_00016.pdb 238 DMVASAFGSLAMMSSVLVSPYGYFEYEAAHGTVQRHYYQHLKGERTST-NPVALIYAWTG 296 usage_00017.pdb 238 DMVASAFGSLAMMSSVLVSPYGYFEYEAAHGTVQRHYYQHLKGERTST-NPVALIYAWTG 296 usage_00018.pdb 238 DMVASAFGSLAMMSSVLVSPYGYFEYEAAHGTVQRHYYQHLKGERTST-NPVALIYAWTG 296 usage_00019.pdb 238 DMVASAFGSLAMMSSVLVSPYGYFEYEAAHGTVQRHYYQHLKGERTST-NPVALIYAWTG 296 usage_00020.pdb 238 DMVASAFGSLAMMSSVLVSPYGYFEYEAAHGTVQRHYYQHLKGERTST-NPVALIYAWTG 296 usage_00024.pdb 238 DMVASAFGSLAMMTSVLVSPDGKYEFEAAHGTVTRHYYKHLKGEETST-NSMATIFAWTG 296 usage_00025.pdb 238 DMVASAFGSLAMMSSVLVSPYGYFEYEAAHGTVQRHYYQHLKGERTST-NPVALIYAWTG 296 usage_00026.pdb 231 DMVASAFGSLAMMTSVLVSPDGKYEFEA-----------------TST-NSMATIFAWTG 272 usage_00027.pdb 227 DMVASAFGSLAMMTSVLVSPDGKYEFEAA----------------TST-NSMATIFAWTG 269 usage_00028.pdb 228 DMVASAFGSLAMMTSVLVSPDGKYEFEA--------------------ANSMATIFAWTG 267 usage_00029.pdb 238 DMIASGFGSLGLMTSVLVSPDGVYEFEAAHGTVRRHYYRYLKGEKTST-NPTASIFAWTG 296 DMvASaFGSLamM SVLVSP G E EA N A I AWTG usage_00016.pdb 297 ALRKRGELDGTPDLCAFCDSLEAITIECIESG---------- 328 usage_00017.pdb 297 ALRKRGELDGTPDLCAFCDSLEAITIECIESG---------- 328 usage_00018.pdb 297 ALRKRGELDGTPDLCAFCDSLEAITIECIESG---------- 328 usage_00019.pdb 297 ALRKRGELDGTPDLCAFCDSLEAITIECIESG---------- 328 usage_00020.pdb 297 ALRKRGELDGTPDLCAFCDSLEAITIECIESG---------- 328 usage_00024.pdb 297 ALKKRGELDGIKELVDFATKLEQASVQTIENG---------- 328 usage_00025.pdb 297 ALRKRGELDGTPDLCAFCDSLEAITIECIESG---------- 328 usage_00026.pdb 273 ALKKRGELDGIKELVDFATKLEQASVQTIENGVMTKDLASLS 314 usage_00027.pdb 270 ALKKRGELDGIKELVDFATKLEQASVQTIENGVMTKDLASL- 310 usage_00028.pdb 268 ALKKRGELDGIKELVDFATKLEQASVQTIENGVMTKDLASLS 309 usage_00029.pdb 297 AIRKRGELDGTPEVCEFADKLEKAVINTIES----------- 327 Al KRGELDG l F LE IE #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################