################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:36:07 2021 # Report_file: c_0428_23.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00061.pdb # 2: usage_00077.pdb # 3: usage_00127.pdb # 4: usage_00165.pdb # 5: usage_00188.pdb # 6: usage_00189.pdb # 7: usage_00221.pdb # 8: usage_00222.pdb # 9: usage_00306.pdb # 10: usage_00452.pdb # 11: usage_00453.pdb # # Length: 135 # Identity: 83/135 ( 61.5%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 83/135 ( 61.5%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 46/135 ( 34.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00061.pdb 1 --ALVCDNGSGLVKAGFAGDDAPRAVFP-------------------------------- 26 usage_00077.pdb 1 -AALVVDNGSGMCKAGFAGDDAPRAVFPSIVG--------------DSYV--GDEAQSKR 43 usage_00127.pdb 1 -TALVCDNGSGLVKAGFAGDDAPRAVFP-------------------------------- 27 usage_00165.pdb 1 ----VVDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPGDEAQSKR 38 usage_00188.pdb 1 ---LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV--GDEAQSKR 55 usage_00189.pdb 1 ---LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV--GDEAQSKR 55 usage_00221.pdb 1 -TALVCDNGSGLVKAGFAGDDAPRAVFPSI------------------------------ 29 usage_00222.pdb 1 -TALVCDNGSGLVKAGFAGDDAPRAVFPSIVG---------------SYV--GDEAQ--- 39 usage_00306.pdb 1 TTALVCDNGSGLVKAGFAGDDAPRAVFPSIVG---------------R-V--GDE----- 37 usage_00452.pdb 1 -TALVCDNGSGLVKAGFAGDDAPRAVFP-------------------------------- 27 usage_00453.pdb 1 -TALVCDNGSGLVKAGFAGDDAPRAVFPSIV---------------DSYV--GDE----- 37 V DNGSG KAGFAGDDAPRAVFP usage_00061.pdb 27 -------YPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 79 usage_00077.pdb 44 GI---K-YPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 99 usage_00127.pdb 28 --------PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 79 usage_00165.pdb 39 GI----LYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 94 usage_00188.pdb 56 GILTLK-YPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 114 usage_00189.pdb 56 GILTLK-YPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 114 usage_00221.pdb 30 -------YPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 82 usage_00222.pdb 40 ---TLK-YPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 95 usage_00306.pdb 38 --RTLK-YPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 94 usage_00452.pdb 28 -------YPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 80 usage_00453.pdb 38 -ILTLK-YPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 95 PIEHGI TNWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQ usage_00061.pdb 80 IMFETFNVPAMYVAI 94 usage_00077.pdb 100 IMFETFNTPAMYVAI 114 usage_00127.pdb 80 IMFETFNVPAMYVAI 94 usage_00165.pdb 95 IMFETFNTPAMYVAI 109 usage_00188.pdb 115 IMFETFNVPAMYVAI 129 usage_00189.pdb 115 IMFETFNVPAMYV-- 127 usage_00221.pdb 83 IMFETFNVPAMYVAI 97 usage_00222.pdb 96 IMFETFNVPAMYVAI 110 usage_00306.pdb 95 IMFETFNVPAMYVAI 109 usage_00452.pdb 81 IMFETFNVPAMYV-- 93 usage_00453.pdb 96 IMFETFNVPAMYV-- 108 IMFETFN PAMYV #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################