################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:47:16 2021 # Report_file: c_0189_9.html ################################################################################################ #==================================== # Aligned_structures: 8 # 1: usage_00417.pdb # 2: usage_00427.pdb # 3: usage_00428.pdb # 4: usage_00429.pdb # 5: usage_00557.pdb # 6: usage_00558.pdb # 7: usage_00593.pdb # 8: usage_00707.pdb # # Length: 253 # Identity: 78/253 ( 30.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 85/253 ( 33.6%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 64/253 ( 25.3%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00417.pdb 1 ---------REAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAK 51 usage_00427.pdb 1 -ESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPD-- 57 usage_00428.pdb 1 -ESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPD-- 57 usage_00429.pdb 1 SESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPD-- 58 usage_00557.pdb 1 -MRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLR--P- 56 usage_00558.pdb 1 -MRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLR--P- 56 usage_00593.pdb 1 --SARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAK 58 usage_00707.pdb 1 TLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGP--- 57 EA H Vr GV G P l E M GDL LRs usage_00417.pdb 52 LLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGD- 110 usage_00427.pdb 58 ---------PGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGD- 107 usage_00428.pdb 58 ----------GPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGD- 106 usage_00429.pdb 59 ----------GPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGD- 107 usage_00557.pdb 57 ----------APPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGD- 105 usage_00558.pdb 57 ----------APPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGD- 105 usage_00593.pdb 59 LLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDF 118 usage_00707.pdb 58 -----------ELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDF 106 p L A A GM YL FVHRDLA RNC V VKIGD usage_00417.pdb 111 -------FSRDIYSTDYYRV-----------TMLPIRWMPPESILYRKFTTESDVWSFGV 152 usage_00427.pdb 108 -------F-----G-----------------TMLPIRWMPPESILYRKFTTESDVWSFGV 138 usage_00428.pdb 107 -------F-------------------------LPIRWMPPESILYRKFTTESDVWSFGV 134 usage_00429.pdb 108 -------F-----G-----------------MMLPIRWMPPESILYRKFTTESDVWSFGV 138 usage_00557.pdb 106 -------F-----GMTRDIYETDYYRKGG-KGLLPVRWMSPESLKDGVFTTYSDVWSFGV 152 usage_00558.pdb 106 -------F-----GMTRDIYETDYYRKGG-KGLLPVRWMSPESLKDGVFTTYSDVWSFGV 152 usage_00593.pdb 119 GMSRDI-Y-----STDYYRV--------GGRTMLPIRWMPPESILYRKFTTESDVWSFGV 164 usage_00707.pdb 107 G--M-DVY-----STDYYR------------TMLPIRWMPPESIMYRKFTTESDVWSFGV 146 LP RWM PES FTT SDVWSFGV usage_00417.pdb 153 VLWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIK 212 usage_00427.pdb 139 VLWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIK 198 usage_00428.pdb 135 VLWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIK 194 usage_00429.pdb 139 VLWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIK 198 usage_00557.pdb 153 VLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFL 212 usage_00558.pdb 153 VLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFL 212 usage_00593.pdb 165 VLWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIK 224 usage_00707.pdb 147 ILWEIFTYGKQPWFQLSNTEVIECITQGRVLERPRVCPKEVYDVMLGCWQREPQQRLNIK 206 vLWEI T QP LSN G L P CP Mr CWQ P R s usage_00417.pdb 213 DVHARLQALAQAH 225 usage_00427.pdb 199 DVHARLQALAQA- 210 usage_00428.pdb 195 DVHARLQALAQA- 206 usage_00429.pdb 199 DVHARLQALAQA- 210 usage_00557.pdb 213 EIISSI------- 218 usage_00558.pdb 213 EIISSI------- 218 usage_00593.pdb 225 DVHARLQALAQA- 236 usage_00707.pdb 207 EIYKILHALGKAT 219 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################