################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:50:13 2021 # Report_file: c_0592_11.html ################################################################################################ #==================================== # Aligned_structures: 12 # 1: usage_00054.pdb # 2: usage_00055.pdb # 3: usage_00056.pdb # 4: usage_00059.pdb # 5: usage_00060.pdb # 6: usage_00365.pdb # 7: usage_00436.pdb # 8: usage_00665.pdb # 9: usage_00666.pdb # 10: usage_00667.pdb # 11: usage_00668.pdb # 12: usage_00712.pdb # # Length: 106 # Identity: 17/106 ( 16.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 25/106 ( 23.6%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 37/106 ( 34.9%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00054.pdb 1 --KSIYVAYTGGTIGMQRSEQGY--IPVSGHLQRQLALMPEFHRPEMPDFTIHEYTPLMD 56 usage_00055.pdb 1 --KSIYVAYTGGTIGMQRSEQGY--IPVSGHLQRQLALMPEFHRPEMPDFTIHEYTPLMD 56 usage_00056.pdb 1 --KSIYVAYTGGTIGMQRSEQGY--IPVSGHLQRQLALMPEFHRPEMPDFTIHEYTPLMD 56 usage_00059.pdb 1 QKKSIYVAYTGG----------------SGHLQRQLALMPEFHRPEMPDFTIHEYTPLMD 44 usage_00060.pdb 1 QKKSIYVAYTGG------------------HLQRQLALMPEFHRPEMPDFTIHEYTPLMD 42 usage_00365.pdb 1 ---RILILG-GGTIASVKGERGYESALSVSKILKLAG---ISS---EAKIEARDL--NVD 48 usage_00436.pdb 1 -MMKILLIGMGGTIASVKGENGYEASLSVKEVLDIAG---IKD---CEDCDFLDLK-NVD 52 usage_00665.pdb 1 -KKSIYVAYTGGTIGMQR-------IPVSGHLQRQLALMPEFHRPEMPDFTIHEYTPLMD 52 usage_00666.pdb 1 QKKSIYVAYTGGTIGMQR----------SGHLQRQLALMPEFHRPEMPDFTIHEYTPLMD 50 usage_00667.pdb 1 -KKSIYVAYTGGTIGMQ--------IPVSGHLQRQLALMPEFHRPEMPDFTIHEYTPLMD 51 usage_00668.pdb 1 QKKSIYVAYTGGTIGMQR-------IPVSGHLQRQLALMPEFHRPEMPDFTIHEYTPLMD 53 usage_00712.pdb 1 -KKSIYVAYTGGTIG-QRSDNGY--IPVSGHLQRQLALP-EFHRP-EPDFTIHEYAPLID 54 I GG d D usage_00054.pdb 57 SSDMTPEDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASA-LSFM 101 usage_00055.pdb 57 SSDMTPEDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASA-LSFM 101 usage_00056.pdb 57 SSDMTPEDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASA-LSFM 101 usage_00059.pdb 45 SSDMTPEDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASA-LSFM 89 usage_00060.pdb 43 SSDMTPEDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASA-LSFM 87 usage_00365.pdb 49 STLIQPSDWERLAKEIEKEVWEYDGIVITHGTDT-AYSASLS-F-- 90 usage_00436.pdb 53 STLIQPEDWVDLAETLYKNVKKYDGIIVTHGTDTLAYTSSM-ISFM 97 usage_00665.pdb 53 SSDMTPEDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASA-LSFM 97 usage_00666.pdb 51 SSDMTPEDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASA-LSFM 95 usage_00667.pdb 52 SSDMTPEDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASA-LSFM 96 usage_00668.pdb 54 SSDMTPEDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASA-LSFM 98 usage_00712.pdb 55 SSD-TPEDWQHIANDIQQNYDLYDGFVILHGTDTAFTASAL-S-F- 96 S PeDW A i YDG vi HGTDT ay s #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################