################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:46:40 2021 # Report_file: c_0508_4.html ################################################################################################ #==================================== # Aligned_structures: 12 # 1: usage_00003.pdb # 2: usage_00004.pdb # 3: usage_00011.pdb # 4: usage_00012.pdb # 5: usage_00013.pdb # 6: usage_00014.pdb # 7: usage_00015.pdb # 8: usage_00016.pdb # 9: usage_00017.pdb # 10: usage_00018.pdb # 11: usage_00027.pdb # 12: usage_00028.pdb # # Length: 111 # Identity: 7/111 ( 6.3%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 24/111 ( 21.6%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 23/111 ( 20.7%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00003.pdb 1 DGKTIAQQVRSEVAQKVQARIAAG-LRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVS 59 usage_00004.pdb 1 --KATRDEIFGDLKQRVAALDAAG--RTPGLGTILVGDDPGSQAYVRGKHADCAKVGITS 56 usage_00011.pdb 1 -------------INNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTSESMGFRY 47 usage_00012.pdb 1 DGKAIAAAIRSELKDKVAALRELYGGRVPGLASIIVGQRMDSKKYVQLKHKAAAEVGMAS 60 usage_00013.pdb 1 -GKAIAANLRQQIAQRVTERRQQG-LRVPGLAVILVGTDPASQVYVAHKRKDCEEVGFLS 58 usage_00014.pdb 1 --KAIAANLRQQIAQRVTERRQQG-LRVPGLAVILVGTDPASQVYVAHKRKDCEEVGFLS 57 usage_00015.pdb 1 -GKAIAANLRQQIAQRVTERRQQG-LRVPGLAVILVGTDPASQVYVAHKRKDCEEVGFLS 58 usage_00016.pdb 1 --KAIAANLRQQIAQRVTERRQQG-LRVPGLAVILVGTDPASQVYVAHKRKDCEEVGFLS 57 usage_00017.pdb 1 --KSLSKDLKERLATQVQEYKHHT-AITPKLVAIIVGNDPASKTYVASKEKACAQVGIDS 57 usage_00018.pdb 1 --KSLSKDLKERLATQVQEYKHHT-AITPKLVAIIVGNDPASKTYVASKEKACAQVGIDS 57 usage_00027.pdb 1 -GKALSAKIKEELKEKNQFLKSKG--IESCLAVILVGDNPASQTYVKSKAKACEECGIKS 57 usage_00028.pdb 1 DGKALSAKIKEELKEKNQFLKSKG--IESCLAVILVGDNPASQTYVKSKAKACEECGIKS 58 L vg p s Yv k k G s usage_00003.pdb 60 RSYDLPETT-SEAELLELIDTLNADNTIDGILVQLPLP-AGIDNVKVLER- 107 usage_00004.pdb 57 IRRDLPADI-STATLNETIDELNANPDCTGYIVQLPLP-KHLDENAALERV 105 usage_00011.pdb 48 DLRVIE--DK-D-FLEEAIIQANGDDSVNGIMVYFPVFGNA-QDQYLQQVV 93 usage_00012.pdb 61 FNVELPEDI-SQEVLEVNVEKLNNDPNCHGIIVQLPLP-KHLNENRAIEKI 109 usage_00013.pdb 59 QAYDLPAET-SQDDLLALIDRLNDDPAIDGILVQLPLP-AHLDASLLLER- 106 usage_00014.pdb 58 QAYDLPAET-SQDDLLALIDRLNDDPAIDGILVQLPLP-AHLDASLLLER- 105 usage_00015.pdb 59 QAYDLPAET-SQDDLLALIDRLNDDPAIDGILVQLPLP-AHLDASLLLER- 106 usage_00016.pdb 58 QAYDLPAET-SQDDLLALIDRLNDDPAIDGILVQLPLP-AHLDASLLLERI 106 usage_00017.pdb 58 QVITLPEHT-TESELLELIDQLNNDSSVHAILVQLPLP-AHINKNNVIYSI 106 usage_00018.pdb 58 QVITLPEHT-TESELLELIDQLNNDSSVHAILVQLPLP-AHINKNNVIYSI 106 usage_00027.pdb 58 LVYHLNENI-TQNELLALINTLNHDDSVHGILVQLPLP-DHICKDLILESI 106 usage_00028.pdb 59 LVYHLNENI-TQNELLALINTLNHDDSVHGILVQLPLP-DHICKDLILESI 107 l L i lN d i VqlPlp #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################