################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:49:17 2021 # Report_file: c_0654_2.html ################################################################################################ #==================================== # Aligned_structures: 8 # 1: usage_00449.pdb # 2: usage_00452.pdb # 3: usage_00453.pdb # 4: usage_00588.pdb # 5: usage_00589.pdb # 6: usage_00590.pdb # 7: usage_00595.pdb # 8: usage_00596.pdb # # Length: 86 # Identity: 16/ 86 ( 18.6%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 18/ 86 ( 20.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 25/ 86 ( 29.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00449.pdb 1 LGWEATTETLYPADGGLEGRCDMALLVG-----HLHCNLKTTYRS-K--KNL-KMPGVYF 51 usage_00452.pdb 1 -----STEKMTVRDGSMKGDDAAYLK--LVGGGNHKCYFTTTYTAKKK---IPNLPQSHF 50 usage_00453.pdb 1 -----STEKMTVRDGSMKGDDASYLK--LVGGGNHKCYFTTTYTAKKK---IPNLPGSHF 50 usage_00588.pdb 1 LGWEASTEMLYPADSGLRGHSQMALK--LVGGGYLHCSLKTTYRSKKPAKNL-KMPGFYF 57 usage_00589.pdb 1 LGWEANTEMLYPADGGLRGHSQMALK--LVGGGYLHCSFKTTYRSKKPAKNL-KMPGFHF 57 usage_00590.pdb 1 LGWEANTEMLYPADGGLRGHSQMALK--LVGGGYLHCSFKTTYRSKKPAKNL-KMPGFHF 57 usage_00595.pdb 1 LGWEASTEMLYPADSGLRGHSQMALK--LVGGGYLHCSLKTTYRSKKPAKNL-KMPGFYF 57 usage_00596.pdb 1 LGWEANTEMLYPADSGLRGHNQMALK--LVGGGYLHCSLKTTYRSKKPAKNL-KMPGFYF 57 TE D G Lk C TTY K Pg F usage_00449.pdb 52 VDR--ER-KEADNETYVEQHEVAVAR 74 usage_00452.pdb 51 IGHRISSVV-N--GTKIGVMEDAIA- 72 usage_00453.pdb 51 IGHRISSVV-E--GTKIKVMEDAIA- 72 usage_00588.pdb 58 VDRKLERIKEADKETYVEQHEMAVA- 82 usage_00589.pdb 58 VDHRLERIKEADKETYVEQHEMAVA- 82 usage_00590.pdb 58 VDHRLERIKEADKETYVEQHEMAVA- 82 usage_00595.pdb 58 VDRKLERIKEADKETYVEQHEMAVA- 82 usage_00596.pdb 58 VDRKLERIKEADKETYVEQHEMAVA- 82 T E A A #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################