################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:30:33 2021 # Report_file: c_0085_5.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00006.pdb # 2: usage_00012.pdb # 3: usage_00019.pdb # 4: usage_00020.pdb # 5: usage_00029.pdb # 6: usage_00045.pdb # 7: usage_00055.pdb # 8: usage_00090.pdb # 9: usage_00125.pdb # 10: usage_00128.pdb # 11: usage_00137.pdb # # Length: 114 # Identity: 42/114 ( 36.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 63/114 ( 55.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 6/114 ( 5.3%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00006.pdb 1 -LVMTQTPLSLPVSLGDQASISCRSSQSLVHSYGNTFLNWYLQKSGQSPKLLIYKVSNRF 59 usage_00012.pdb 1 -VLMTQTPLSLPVSLGDQASISCRSSQTIVHSNGNTYLEWYLQKPGQSPKLLIYKVTNRF 59 usage_00019.pdb 1 --LMTQTPLSLPVSLGDQASISCRSSQTIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRF 58 usage_00020.pdb 1 DVLMTQTPLSLPVSLGDQASISCRSSQSLVHSDGNTYLEWYLQKPGQSPNLLIYKLSNRF 60 usage_00029.pdb 1 -VVMTQSPLSLPVTLGQPASISCRSSQSLIYSDGNAYLHWFLQKPGQSPRLLIYKVSNRF 59 usage_00045.pdb 1 DIQMTQSPSSLSASVGDRVTITCRSSQRIVHSNGNTYLEWYQQTPGKAPKLLIYKVSNRF 60 usage_00055.pdb 1 -IQLTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRF 59 usage_00090.pdb 1 --VMTQTPLTLSITIGQPVSISCKSSQSLFASDGRTYLNWLLQRPGQSPERLIYLVSNLD 58 usage_00125.pdb 1 --VMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVANRF 58 usage_00128.pdb 1 --QMTQSPSSLSASVGDRVTITCRSSQRIVHSNGNTYLEWYQQTPGKAPKLLIYKVSNRF 58 usage_00137.pdb 1 --LMTQTPLSLPVSLGDQASISCKSSQSIVHSSGNTYFEWYLQKPGQSPKLLIYKVSNRF 58 mTQ P sL G I C SSQ S Gntyl W Q pG P lLIYkv Nrf usage_00006.pdb 60 SGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQGTHVPYTFGGGTKLEI--- 110 usage_00012.pdb 60 SGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGTHAPYTFGGGTKLEI--- 110 usage_00019.pdb 59 PGVPDRFSGSGSGTDFTLKIRRVEAEDLGVYYCFQASHDPPTFGGGTKLEI--- 109 usage_00020.pdb 61 SGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPPTFGGGTKLEIKRA 114 usage_00029.pdb 60 SGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCSQSTHVPWTFGQGTKVEI--- 110 usage_00045.pdb 61 SGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCFQGSHVPFTFGQGTKLQI--- 111 usage_00055.pdb 60 SGVPDRFSGSGSGTDFTLKISSVEAEDLGVYFCSQSTHVPTFGGGTKLEI---- 109 usage_00090.pdb 59 SGVLDRFTGSGSGTDFTLKISRVEAEDLGVYYCWQGTHFPQTFGGGTKLEIKRA 112 usage_00125.pdb 59 SGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKRA 112 usage_00128.pdb 59 SGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCFQGSHVPFTFGQGTKLQI--- 109 usage_00137.pdb 59 SGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHIPFTFGSGTKLEI--- 109 sGVp RFsGSGSGTDFT Is ED Y C Q H P tfG gtk #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################