################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:10:32 2021 # Report_file: c_1041_20.html ################################################################################################ #==================================== # Aligned_structures: 9 # 1: usage_00164.pdb # 2: usage_00165.pdb # 3: usage_00176.pdb # 4: usage_00181.pdb # 5: usage_00267.pdb # 6: usage_00307.pdb # 7: usage_00357.pdb # 8: usage_00392.pdb # 9: usage_00393.pdb # # Length: 40 # Identity: 1/ 40 ( 2.5%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 2/ 40 ( 5.0%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 14/ 40 ( 35.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00164.pdb 1 --AILLLPGWCHDHRVYKYLIQELDADFR----VIVPN-- 32 usage_00165.pdb 1 ERVVVLSHGFGTDQSAWSRVLPYLTRDHR----VVLYD-- 34 usage_00176.pdb 1 --VLVLLNFGSQ----SSNALRQAVNFGIKERKVLLVW-- 32 usage_00181.pdb 1 -RVVVLSHGFGTDQSAWSRVLPYLTRDHR----VVLYD-- 33 usage_00267.pdb 1 -PTLLLIHGLAGSRDNWNRVAHYLTTNYH----VIIPD-- 33 usage_00307.pdb 1 DTTVVLGHGFGTDQSVWKHLVPYLVDSYR----VLLYD-- 34 usage_00357.pdb 1 -DVVILTVPAF-AHEGYFQAMAPYVQ-DS----ALIVGLP 33 usage_00392.pdb 1 -RVLVLAHGFGTDQSAWNRILPFFLRDYR----VVLYD-- 33 usage_00393.pdb 1 -RVLVLAHGFGTDQSAWNRILPFFLRDYR----VVLYD-- 33 L v #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################