################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:48:16 2021 # Report_file: c_0361_4.html ################################################################################################ #==================================== # Aligned_structures: 8 # 1: usage_00001.pdb # 2: usage_00002.pdb # 3: usage_00003.pdb # 4: usage_00034.pdb # 5: usage_00035.pdb # 6: usage_00040.pdb # 7: usage_00041.pdb # 8: usage_00042.pdb # # Length: 117 # Identity: 8/117 ( 6.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 19/117 ( 16.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 30/117 ( 25.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 -KSILENIQSTWKVGVIANS--GDNAVSLKVTR-FEDLRVVLNHFEKYP--LITQKLGDY 54 usage_00002.pdb 1 -NELLKRIQSYLGVGKIHIH--GKDSIQFRIDS-PKELEVIINHFENYP--LVTAKQADY 54 usage_00003.pdb 1 -NELLKRIQSYLGVGKIHIH--GKDSIQFRIDS-PKELEVIINHFENYP--LVTAKQADY 54 usage_00034.pdb 1 -REVLEAIKEHLGIGRIMEKAGQPNTYVYVVDN-FNELVKLINFLNKYADF-MIVKKRQF 57 usage_00035.pdb 1 -KSILENIQSTWKVGVIANS--GDNAVSLKVTR-FEDLKVIIDHFEKYP--LITQKLGDY 54 usage_00040.pdb 1 DLSLLNKIKEFFDVGNVFLM--TKDSAQYRVES-LKGLDLIINHFDKYP--LITKKQADY 55 usage_00041.pdb 1 -EYLIKSLIEYLGCGNTSLD--PRGTIDFKVTNFSSIKDIIVPFFIKYP--LKGNKNLDF 55 usage_00042.pdb 1 -LSLLNKIKEFFDVGNVFLM--TKDSAQYRVES-LKGLDLIINHFDKYP--LITKKQADY 54 l i G l f Yp K d usage_00001.pdb 55 LLFKQAFSVMENKEHLKIEGIKRLVGIKANLN--------WGL-TDELKEAF----- 97 usage_00002.pdb 55 TLFKKALDVIKNKEHLSQKGLLKLVGIKASLN--------LGL-NGSLKEAF----- 97 usage_00003.pdb 55 TLFKKALDVIKNKEHLSQKGLLKLVGIKASLN--------LGL-NGSLKEAF----- 97 usage_00034.pdb 58 LMFREIANGLVNGEHLHINGLKRLVKLAYELTKESEKGYR-KYDLNHVLSIIDKWDL 113 usage_00035.pdb 55 MLFKQAFCVMENKEHLKINGIKELVRIKAKLN--------WGL-TDELKKAF----- 97 usage_00040.pdb 56 KLFKMAHNLIKNKSHLTKEGLLELVAIKAVIN--------NGL-NNDLSIAF----- 98 usage_00041.pdb 56 TDFCEVVRLMENKSHLTKEGLDQIKKIRNRMN--------TNR-------------- 90 usage_00042.pdb 55 KLFKMAHNLIKNKSHLTKEGLLELVAIKAVIN--------NGL-NNDLSIAF----- 97 F Nk HL G lv i n #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################