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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Wed Jan 20 23:15:37 2021
# Report_file: c_0406_25.html
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#====================================
# Aligned_structures: 5
#   1: usage_00028.pdb
#   2: usage_00034.pdb
#   3: usage_00238.pdb
#   4: usage_00401.pdb
#   5: usage_00402.pdb
#
# Length:        105
# Identity:       18/105 ( 17.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     59/105 ( 56.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           29/105 ( 27.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00028.pdb         1  ---LTRVPKMGSVTLMCPAQ--AYPVPFFRWYKFI--EGTTRKQAVVLNDRVKQVS----   49
usage_00034.pdb         1  --KPLELMVAHTISLLCPAQ--GFPAPSFRWYKFI--EGTTRKQAVVLNDRVKQVS----   50
usage_00238.pdb         1  --RSVTKETGESLTINCALKNAADDLERTDWYRTTLGST--NEQKISIGGRYVETVNKGS   56
usage_00401.pdb         1  KISSLLGSSSSDIVLLCQAQ--AFPVPYTRWYKFI--EGTTRKQAVVLNDRVKQVS----   52
usage_00402.pdb         1  KISSLLGSSSSDIVLLCQAQ--AFPVPYTRWYKFI--EGTTRKQAVVLNDRVKQVS----   52
                                         l C aq  a p p  rWYkfi  eg  rkQavvlndRvkqvs    

usage_00028.pdb        50  --GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKI   92
usage_00034.pdb        51  --GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKI   93
usage_00238.pdb        57  KSFSLRIRDLRVEDSGTYKCGAYFS-PGEKGA-------------   87
usage_00401.pdb        53  --GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA------   89
usage_00402.pdb        53  --GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKI   95
                             gtLiIkDavVEDSGkYlCvvnnS gGEsve             


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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