################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:06:30 2021 # Report_file: c_0086_1.html ################################################################################################ #==================================== # Aligned_structures: 14 # 1: usage_00021.pdb # 2: usage_00041.pdb # 3: usage_00044.pdb # 4: usage_00047.pdb # 5: usage_00052.pdb # 6: usage_00067.pdb # 7: usage_00078.pdb # 8: usage_00079.pdb # 9: usage_00125.pdb # 10: usage_00126.pdb # 11: usage_00129.pdb # 12: usage_00143.pdb # 13: usage_00144.pdb # 14: usage_00154.pdb # # Length: 121 # Identity: 20/121 ( 16.5%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 29/121 ( 24.0%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 18/121 ( 14.9%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00021.pdb 1 -IQMTQTTSSLSASLGDRVTISCRASQD-IS------NYLNWYQQNPDGTVKLLIYYTSN 52 usage_00041.pdb 1 -NFMLNQPHSVSESPGKTVTISCTRSSGNID----S-NYVQWYQQRPGSAPITVIYEDNQ 54 usage_00044.pdb 1 -NFLLTQPHSVSESPGKTVTISCTRSSGSIA----N-NYVHWYQQRPGSSPTTVIFEDDH 54 usage_00047.pdb 1 --YELTQPPSVSVAPGQTARISCSGDN--IG----G-TFVSWYQQKPGQAPVLVIYDDND 51 usage_00052.pdb 1 -IELTQSPKSMSMSVGERVTLSCKASET-VD------SFVSWYQQKPEQSPKLLIFGASN 52 usage_00067.pdb 1 --IELTQPPSVSVVPGQTARISCSGDN--IP----Y-EYASWYQQKPGQAPVLVIYGDNN 51 usage_00078.pdb 1 --YELTQPPSVSVAPGKTARITCGGNN--IG----S-KSVHWYQQKPGQAPVLVVYDDSD 51 usage_00079.pdb 1 -NFMLTQPHSVSESPGKTVTISCTRSSGSIA----S-NYVQWYQQRPGSSPTTVIYEDNQ 54 usage_00125.pdb 1 -TTVTQSPASLSVAIGEKVTIRCITSTD-ID------DDMNWYQQKPGEPPKFFISEGNT 52 usage_00126.pdb 1 -NFMLTQSHSVSESPGKTVTISCTRSSGSIA----S-NYVQWYQQRPGSSPTTVIYEDNQ 54 usage_00129.pdb 1 --YELTQPPSVSVSPGQAATITCSGDK--LG----D-KYVSWYQQRPGQSPLLVVYQDNK 51 usage_00143.pdb 1 -NFMLTQPHSVSESPGKTVTISCTRSSGSLA----N-YYVQWYQQRPGSSPTIVIFANNQ 54 usage_00144.pdb 1 -NFMLTQPHSVSESPGKTVTISCTRSSGSLA----N-YYVQWYQQRPGSSPTIVIFANNQ 54 usage_00154.pdb 1 DIELTQSPSSLAVSAGEKVTMSCKSSQS-LLNSGNQKNYLAWYQQKPGLPPKLLIYGAST 59 S s G C WYQQ P p usage_00021.pdb 53 LHSEVPSRFSGSGSG--TDYSLTISNLEQEDIATYFCQQDFTL--PFTF-GGGTKLEIRR 107 usage_00041.pdb 55 RPSGVPDRFAGSIDRSSNSASLTISGLKTEDEADYYCQSYDAR--NVVF-GGGTRLTVL- 110 usage_00044.pdb 55 RPSGVPDRFSGSVDTSSNSASLTISGLKTEDEADYYCQSYDHN--NQVF-GGGTKLTVLG 111 usage_00047.pdb 52 RPSGIPERFSGSNSG--NTATLTISGTQAEDEADYYCGTWDMVT-NNVF-GGGTKLTV-- 105 usage_00052.pdb 53 RFSGVPDRFTGSGSA--TDFTLTISSVQAEDFADYHCGQTYNH--PYTF-GGGTKLEI-- 105 usage_00067.pdb 52 RPSGIPERFSGSNSG--NTATLTISGTQAEDEADYYCASWDSMTVDGVF-GGGTKLTV-- 106 usage_00078.pdb 52 RPSGIPERFSGSNSG--NTATLTISRVEAGDEADYYCQVWDSSS-DYVF-GTGTKVTV-- 105 usage_00079.pdb 55 RPSGVPDRFSGSIDSSSNSASLTISGLKTEDEADYYCQSYDSS--NHVVFGGGTKLTVL- 111 usage_00125.pdb 53 LRPGVPSRFSSSGYG--TDFVFTIENMLSEDVADYYCLQSDTL--PLTF-GSGTKLEI-- 105 usage_00126.pdb 55 RPSGVPDRFSGSIDSSSNSASLTISGLKTEDEADYYCQSYDSS--NHVVFGGGTKLTV-- 110 usage_00129.pdb 52 RPSGIPERISGSNSG--NTATLTIRGTRAMDEADYYCQAWDSST-DVVF-GGGTKLTV-- 105 usage_00143.pdb 55 RPSGVPDRFSGSIDSSSNSASLTISGLKTEDEADYYCQTYDPY--SVVF-GGGTKLTV-- 109 usage_00144.pdb 55 RPSGVPDRFSGSIDSSSNSASLTISGLKTEDEADYYCQTYDPY--SVVF-GGGTKLTV-- 109 usage_00154.pdb 60 RESGVPDRFTGSGSG--TDFTLTISSVQAEDLAVYYCQNDHSY--PLTF-GAGTKLEIKR 114 sg P Rf gS lTI D A Y C G GTkl usage_00021.pdb - usage_00041.pdb - usage_00044.pdb - usage_00047.pdb - usage_00052.pdb - usage_00067.pdb - usage_00078.pdb - usage_00079.pdb - usage_00125.pdb - usage_00126.pdb - usage_00129.pdb - usage_00143.pdb - usage_00144.pdb - usage_00154.pdb 115 T 115 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################