################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:58:10 2021 # Report_file: c_0542_9.html ################################################################################################ #==================================== # Aligned_structures: 13 # 1: usage_00038.pdb # 2: usage_00039.pdb # 3: usage_00040.pdb # 4: usage_00041.pdb # 5: usage_00063.pdb # 6: usage_00137.pdb # 7: usage_00138.pdb # 8: usage_00225.pdb # 9: usage_00226.pdb # 10: usage_00227.pdb # 11: usage_00256.pdb # 12: usage_00259.pdb # 13: usage_00260.pdb # # Length: 190 # Identity: 22/190 ( 11.6%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 35/190 ( 18.4%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 85/190 ( 44.7%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00038.pdb 1 --------QQLEACVKQANQALSRFIAP----LPFQN-TPVVETMQYGALLGGKRLRPFL 47 usage_00039.pdb 1 ------FPQQLEACVKQANQALSRFIAP----LPFQN-TPVVETMQYGALLGGKRLRPFL 49 usage_00040.pdb 1 ------FPQQLEACVKQANQALSRFIAP----LPFQN-TPVVETMQYGALLGGKRLRPFL 49 usage_00041.pdb 1 ------FPQQLEACVKQANQALSRFIAP----LPFQN-TPVVETMQYGALLGGKRLRPFL 49 usage_00063.pdb 1 DAQMTNFETRLRENAAKTEALLGHLLSGEARADEITRPQNLLEAMRHGVLNGGKRLRPFL 60 usage_00137.pdb 1 -NSTQMNKQVIDKYTQRHELYLEQLLNE----III-PAPQIRSALHYALFSGGKRIRPIL 54 usage_00138.pdb 1 --STQMNKQVIDKYTQRHELYLEQLLNE----III-PAPQIRSALHYALFSGGKRIRPIL 53 usage_00225.pdb 1 -----DFPQQLEACVKQANQALSRFIAP----LPFQN-TPVVETMQYGALLGGKRLRPFL 50 usage_00226.pdb 1 ------FPQQLEACVKQANQALSRFIAP----LPFQN-TPVVETMQYGALLGGKRLRPFL 49 usage_00227.pdb 1 -----------------VEERIREILRP--GW----D-LLTEEAMLYSATVGG-RIRPLL 35 usage_00256.pdb 1 ------SLEALSSYQQRNNQQLDQWLNR----IPFQT-LPLIEAMRYGLLLGGKRARPYL 49 usage_00259.pdb 1 ------LKQFSTYTQSRVDQYLEQQLSD--YA----PANQLHNAMRYSL-FGGKRIRPML 47 usage_00260.pdb 1 ------LKQFSTYTQSRVDQYLEQQLSD--YA----PANQLHNAMRYSL-FGGKRIRPML 47 l y GG R RP L usage_00038.pdb 48 VYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAI 107 usage_00039.pdb 50 VYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAI 109 usage_00040.pdb 50 VYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAI 109 usage_00041.pdb 50 VYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAI 109 usage_00063.pdb 61 VIESVALLGGDAEAGLHVGAALECLHCYSLVHDDLPAMDDDDLRRGQPTVHRKFDEATAI 120 usage_00137.pdb 55 VYLAGDLIDVDQGVLDIIAAALELTHCYSLIHDDLPAMDNDDLRRGKPSCHKAFDEATAI 114 usage_00138.pdb 54 VYLAGDLIDVDQGVLDIIAAALELTHCYSLIHDDLPAMDNDDLRRGKPSCHKAFDEATAI 113 usage_00225.pdb 51 VYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAI 110 usage_00226.pdb 50 VYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAI 109 usage_00227.pdb 36 VLTLGEDLGVEE-ELLDVAVAVELFHTASLIHDDLPPIDNADFRRG-PSCHRTYGEDIAL 93 usage_00256.pdb 50 VYITGQMLGCELSDLDTPASAVECIHAYSLIHDDLPAMDD--------------DEATAI 95 usage_00259.pdb 48 TYASAQLVGDISSLTDASAAALESIHAYSLIHDDLPAMDN-------PTCHIQFDEATAI 100 usage_00260.pdb 48 TYASAQLVGDISSLTDASAAALESIHAYSLIHDDLPAM---------------FDEATAI 92 a A E H ySLiHDDLPam Ea Ai usage_00038.pdb 108 LAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDAE------ 161 usage_00039.pdb 110 LAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDA------- 162 usage_00040.pdb 110 LAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDA------- 162 usage_00041.pdb 110 LAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDAE------ 163 usage_00063.pdb 121 LAGDSLLTLAFDIIAS-DDNPLAAERKAALVISLARAAGIGGMAGGQALDLAA------- 172 usage_00137.pdb 115 LVGDGMQALAIEVLLMRLSPLLPAAQVVAITQVLVNASGISGM----------------- 157 usage_00138.pdb 114 LVGDGMQALAIEVLLMRLSPLLPAAQVVAITQVLVNASGISGM----------------- 156 usage_00225.pdb 111 LAGDALQTLAFSILSDANMPEVSDRDRISMISELASASGIAGMCGGQALDLDAE------ 164 usage_00226.pdb 110 LAGDALQTLAFSILSDANMPEVSDRDRISMISELASASGIAGMCGGQALDLDA------- 162 usage_00227.pdb 94 LAGDGLFFLAFSQIS-------IGN---SIFEEFSETAY---LLLGEAMDVEFERRMEVS 140 usage_00256.pdb 96 LTGDALQTLAFTILAEGDLSAAGETQRVAMLQALAEASGAQGMCLGQALDLAA------- 148 usage_00259.pdb 101 LAGDALQTFAFELLSN-PT-SAQPELAIKLIQELVVASGRNGMITGQMIDLSS------- 151 usage_00260.pdb 93 LAGDALQTFAFELLSN-PT-SAQPELAIKLIQELVVASGRNGMITGQMIDLSS------- 143 L GD A l a g m usage_00038.pdb ---------- usage_00039.pdb ---------- usage_00040.pdb ---------- usage_00041.pdb ---------- usage_00063.pdb ---------- usage_00137.pdb ---------- usage_00138.pdb ---------- usage_00225.pdb ---------- usage_00226.pdb ---------- usage_00227.pdb 141 QEMVERMYAF 150 usage_00256.pdb ---------- usage_00259.pdb ---------- usage_00260.pdb ---------- #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################