################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:16:47 2021 # Report_file: c_1135_92.html ################################################################################################ #==================================== # Aligned_structures: 14 # 1: usage_00002.pdb # 2: usage_00003.pdb # 3: usage_00005.pdb # 4: usage_00006.pdb # 5: usage_00248.pdb # 6: usage_00249.pdb # 7: usage_00359.pdb # 8: usage_00360.pdb # 9: usage_00361.pdb # 10: usage_00362.pdb # 11: usage_00363.pdb # 12: usage_00462.pdb # 13: usage_00499.pdb # 14: usage_00520.pdb # # Length: 125 # Identity: 16/125 ( 12.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 32/125 ( 25.6%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 65/125 ( 52.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00002.pdb 1 -----QQAIGDALGITARNLKKFGD-RFPHVSDGSNKYVLNDNTDWTDGFWSGILWLCYE 54 usage_00003.pdb 1 --------------------------------------------DWTDGFWSGILWLCYE 16 usage_00005.pdb 1 ----WQQAIGDALGITARNLKKFGD-RFPHVSDGSNKYVLNDNTDWTDGFWSGILWLCYE 55 usage_00006.pdb 1 ----WQQAIGDALGITARNLKKFGD-RFPHVSDGSNKYVLNDNTDWTDGFWSGILWLCYE 55 usage_00248.pdb 1 ----WQQAIGDALGITARNLKKFGD-RFPHVSDGSNKYVLNDNTDWTDGFWSGILWLCYE 55 usage_00249.pdb 1 -----QQAIGDALGITARNLKKFGD-RFPHVSDGSNKYVLNDNTDWTDGFWSGILWLCYE 54 usage_00359.pdb 1 ----WQQAIGDALGITARNLKKFGD-RFPHVSDGSNKYVLNDNTDWTDGFWSGILWLCYE 55 usage_00360.pdb 1 ------QAIGDALGITARNLKKFGD-RFPHVSDGSNKYVLNDNTDWTDGFWSGILWLCYE 53 usage_00361.pdb 1 ----WQQAIGDALGITARNLKKFGD-RFPHVSDGSNKYVLNDNTDWTDGFWSGILWLCYE 55 usage_00362.pdb 1 ------QAIGDALGITARNLKKFGD-RFPHVSDGSNKYVLNDNTDWTDGFWSGILWLCYE 53 usage_00363.pdb 1 ------QAIGDALGITARNLKKFGD-RFPHVSDGSNKYVLNDNTDWTDGFWSGILWLCYE 53 usage_00462.pdb 1 TKIEVEEAIEKALKQLYINIDYFGE-EYPTPATFNNIYKVMDNTEWTNGFWTGCLWLAYE 59 usage_00499.pdb 1 -DDWLKKSTKTAVIQLTRAAQTYTPGMNPRSVNPDGTVRLAPPRDWTTGFFPGTLWYGYE 59 usage_00520.pdb 1 ----WQQAIGDALGITARNLKKFGD-RFPHVSDGSNKYVLNDNTDWTDGFWSGILWLCYE 55 dWT GFw G LWl YE usage_00002.pdb 55 YTGDEQYREGAVRTVASFRERLDRFENLDHHNIGFLYSLSAKAQWIV------------- 101 usage_00003.pdb 17 YTGDEQYREGAVRTVASFRERLDRFENLDHHNIGFLYSLSAKAQWIVEKDESARKLALDA 76 usage_00005.pdb 56 YTGDEQYREGAVRTVASFRERLDRFENLDHHNIGFLYSLSAKAQWIV------------- 102 usage_00006.pdb 56 YTGDEQYREGAVRTVASFRERLDRFENLDHHNIGFLYSLSAKAQWIV------------- 102 usage_00248.pdb 56 YTGDEQYREGAVRTVASFRERLDRFENLDHHDIGFLYSLSAKAQWIV------------- 102 usage_00249.pdb 55 YTGDEQYREGAVRTVASFRERLDRFENLDHHDIGFLYSLSAKAQWIV------------- 101 usage_00359.pdb 56 YTGDEQYREGAVRTVASFRERLDRFENLDHHDIGFLYSLSAKAQWIV------------- 102 usage_00360.pdb 54 YTGDEQYREGAVRTVASFRERLDRFENLDHHNIGFLYSLSAKAQWIV------------- 100 usage_00361.pdb 56 YTGDEQYREGAVRTVASFRERLDRFENLDHHNIGFLYSLSAKAQWIV------------- 102 usage_00362.pdb 54 YTGDEQYREGAVRTVASFRERLDRFENLDHHNIGFLYSLSAKAQWIV------------- 100 usage_00363.pdb 54 YTGDEQYREGAVRTVASFRERLDRFENLDHHNIGFLYSLSAKAQWIV------------- 100 usage_00462.pdb 60 YNQDKKLKNIAHKNVLSFLNRINNRIALDHHNLGFLYTPSCTAEYRIN------------ 107 usage_00499.pdb 60 LSGDKNLAAEAKRFTLALDTIQYV---KDTHDLGFMLYCSYGNAYRV------------- 103 usage_00520.pdb 56 YTGDEQYREGAVRTVASFRERLDRFENLDHHDIGFLYSLSAKAQWIV------------- 102 y gD A r v sf r lDhH GFly S a v usage_00002.pdb ----- usage_00003.pdb 77 ADVLM 81 usage_00005.pdb ----- usage_00006.pdb ----- usage_00248.pdb ----- usage_00249.pdb ----- usage_00359.pdb ----- usage_00360.pdb ----- usage_00361.pdb ----- usage_00362.pdb ----- usage_00363.pdb ----- usage_00462.pdb ----- usage_00499.pdb ----- usage_00520.pdb ----- #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################