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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Thu Jan 21 00:10:27 2021
# Report_file: c_1012_48.html
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#====================================
# Aligned_structures: 9
#   1: usage_00179.pdb
#   2: usage_00338.pdb
#   3: usage_00339.pdb
#   4: usage_00365.pdb
#   5: usage_00366.pdb
#   6: usage_00540.pdb
#   7: usage_00541.pdb
#   8: usage_00616.pdb
#   9: usage_00617.pdb
#
# Length:         71
# Identity:       16/ 71 ( 22.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     16/ 71 ( 22.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           31/ 71 ( 43.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00179.pdb         1  -----RVVLIGEQGVGKSTLANIFAG-------VHDSMDSD-----LG-EDTYERTLMVD   42
usage_00338.pdb         1  --ALYRVVLLGDPGVGKTSLASLFAG-------K---------HEQLG-EDVYERTLTVD   41
usage_00339.pdb         1  --ALYRVVLLGDPGVGKTSLASLFAG-------KQER----DLHEQLG-EDVYERTLTVD   46
usage_00365.pdb         1  --GVFKVMLLGESGVGKSTLAGTFG-------------------------DTYERRIMVD   33
usage_00366.pdb         1  --GVFKVMLLGESGVGKSTLAGTFGG-----------------------EDTYERRIMVD   35
usage_00540.pdb         1  --TYYRVVLIGEQGVGKSTLANIFAGVHDSEVL--------------G-EDTYERTLMVD   43
usage_00541.pdb         1  GMTYYRVVLIGEQGVGKSTLANIFAG-------V---------------EDTYERTLMVD   38
usage_00616.pdb         1  -----KVLLLGAPGVGKSALARIFGG-------VE-------------DGHTYDRSIVVD   35
usage_00617.pdb         1  --SVYKVLLLGAPGVGKSALARIFGG-------V---------------GHTYDRSIVVD   36
                                 V L G  GVGK  LA  F                            Y R   VD

usage_00179.pdb        43  GESATIILLD-   52
usage_00338.pdb        42  GEDTTLVVVDT   52
usage_00339.pdb        47  GEDTTLVVVD-   56
usage_00365.pdb        34  KEEVTLIVYD-   43
usage_00366.pdb        36  KEEVTLIVYD-   45
usage_00540.pdb        44  GESATIILLDM   54
usage_00541.pdb        39  GESATIILLDM   49
usage_00616.pdb        36  GEEASLMVYD-   45
usage_00617.pdb        37  GEEASLMVYD-   46
                            E       D 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################