################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:35:55 2021 # Report_file: c_0318_2.html ################################################################################################ #==================================== # Aligned_structures: 7 # 1: usage_00010.pdb # 2: usage_00011.pdb # 3: usage_00016.pdb # 4: usage_00029.pdb # 5: usage_00030.pdb # 6: usage_00031.pdb # 7: usage_00032.pdb # # Length: 183 # Identity: 83/183 ( 45.4%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 92/183 ( 50.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 18/183 ( 9.8%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00010.pdb 1 -WREDVQLLKSYGVKAYRFSLSWSRIIPKGGRSDPVNGAGIKHYRTLIEELVKEGITPFV 59 usage_00011.pdb 1 RWREDVQLLKSYGVKAYRFSLSWSRIIPKGGRSDPVNGAGIKHYRTLIEELVKEGITPFV 60 usage_00016.pdb 1 -TKEDIALLKELGANSYRFSISWSRIIPLGGRNDPINQKGIDHYVKFVDDLIEAGITPFI 59 usage_00029.pdb 1 -TAEDIALLKSLGAKSYRFSISWSRIIPEGGRGDAVNQAGIDHYVKFVDDLLDAGITPFI 59 usage_00030.pdb 1 -TAEDIALLKSLGAKSYRFSISWSRIIPEGGRGDAVNQAGIDHYVKFVDDLLDAGITPFI 59 usage_00031.pdb 1 -TAEDIALLKSLGAKSYRFSISWSRIIPEGGRGDAVNQAGIDHYVKFVDDLLDAGITPFI 59 usage_00032.pdb 1 -TAEDIALLKSLGAKSYRFSISWSRIIPEGGRGDAVNQAGIDHYVKFVDDLLDAGITPFI 59 ED LLKs G k YRFS SWSRIIP GGR D vN aGI HY L GITPF usage_00010.pdb 60 TLYHWDLPQALDDRYGGWLNKEEAIQDFTNYAKLCFESFGDLVQNWITFNEPWVISVMGY 119 usage_00011.pdb 61 TLYHWDLPQALDDRYGGWLNKEEAIQDFTNYAKLCFESFGDLVQNWITFNEPWVISVMGY 120 usage_00016.pdb 60 TLFHWDLPDALDKRYGGFLNKEEFAADFENYARIMFKAI-PKCKHWITFNEPWCSAILGY 118 usage_00029.pdb 60 TLFHWDLPEGLHQRYGGLLNRTEFPLDFENYARVMFRAL-PKVRNWITFNEPLCSAIPGY 118 usage_00030.pdb 60 TLFHWDLPEGLHQRYGGLLNRTEFPLDFENYARVMFRAL-PKVRNWITFNEPLCSAIPGY 118 usage_00031.pdb 60 TLFHWDLPEGLHQRYGGLLNRTEFPLDFENYARVMFRAL-PKVRNWITFNEPLCSAIPGY 118 usage_00032.pdb 60 TLFHWDLPEGLHQRYGGLLNRTEFPLDFENYARVMFRAL-PKVRNWITFNEPLCSAIPGY 118 TL HWDLP L RYGG LN E DF NYA F v nWITFNEP GY usage_00010.pdb 120 GNGIFAPGHV---------S-NTEPWIVSHHIILAHAHAVKLYRDEFKEKQGG-QIGI-T 167 usage_00011.pdb 121 GNGIFAPGHV---------S-NTEPWIVSHHIILAHAHAVKLYRDEFKEKQGG-QIGI-T 168 usage_00016.pdb 119 NTGYFAPGHTSDRSKSPVGDSAREPWIVGHNILIAHARAVKAYREDFKPTQGG-EIGI-T 176 usage_00029.pdb 119 GSGTFAPGRQ---------S-TSEPWTVGHNILVAHGRAVKAYRDDFKPASGDGQIGI-V 167 usage_00030.pdb 119 GSGTFAPGRQ---------S-TSEPWTVGHNILVAHGRAVKAYRDDFKPASGD-GQIG-- 165 usage_00031.pdb 119 GSGTFAPGRQ---------S-TSEPWTVGHNILVAHGRAVKAYRDDFKPASGD-GQIGIV 167 usage_00032.pdb 119 GSGTFAPGRQ---------S-TSEPWTVGHNILVAHGRAVKAYRDDFKPASGD-GQIG-- 165 g G FAPG s EPW V H I AH AVK YRd FK G usage_00010.pdb 168 LDS 170 usage_00011.pdb 169 LDS 171 usage_00016.pdb 177 LNG 179 usage_00029.pdb 168 LNG 170 usage_00030.pdb --- usage_00031.pdb 168 LNG 170 usage_00032.pdb --- #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################