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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Wed Jan 20 23:10:11 2021
# Report_file: c_0003_2.html
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#====================================
# Aligned_structures: 5
#   1: usage_00006.pdb
#   2: usage_00008.pdb
#   3: usage_00009.pdb
#   4: usage_00010.pdb
#   5: usage_00011.pdb
#
# Length:        436
# Identity:      228/436 ( 52.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    404/436 ( 92.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           32/436 (  7.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00006.pdb         1  -----------DQIGN----THLRQFFADDPGRGRELTVSVGDLYIDYSKHRVTRETLAL   45
usage_00008.pdb         1  ATKLEATVAKLKKHWAESAPRDMRAAFSADPGRFGRYSLCLDDLLFDWSKCRVNDETMAL   60
usage_00009.pdb         1  ATKLEATVAKLKKHWAESAPRDMRAAFSADPGRFGRYSLCLDDLLFDWSKCRVNDETMAL   60
usage_00010.pdb         1  ATKLEATVAKLKKHWAESAPRDMRAAFSADPGRFGRYSLCLDDLLFDWSKCRVNDETMAL   60
usage_00011.pdb         1  -TKLEATVAKLKKHWAESAPRDMRAAFSADPGRFGRYSLCLDDLLFDWSKCRVNDETMAL   59
                                      kkhwa    rdmRaaFsaDPGRfgryslcldDLlfDwSKcRVndETmAL

usage_00006.pdb        46  LIDLARTAHLEERRDQMFAGVHINTSEDRAVLHTALRLPRDAELVVDGQDVVTDVHAVLD  105
usage_00008.pdb        61  LKELAVAADVEGRRAAMFAGEHINNTEDRAVLHVALRDTSSKEVLVDGHNVLPDVKHVLD  120
usage_00009.pdb        61  LKELAVAADVEGRRAAMFAGEHINNTEDRAVLHVALRDTSSKEVLVDGHNVLPDVKHVLD  120
usage_00010.pdb        61  LKELAVAADVEGRRAAMFAGEHINNTEDRAVLHVALRDTSSKEVLVDGHNVLPDVKHVLD  120
usage_00011.pdb        60  LKELAVAADVEGRRAAMFAGEHINNTEDRAVLHVALRDTSSKEVLVDGHNVLPDVKHVLD  119
                           LkeLAvaAdvEgRRaaMFAGeHINntEDRAVLHvALRdtsskEvlVDGhnVlpDVkhVLD

usage_00006.pdb       106  AMGAFTDRLRSGEWTGATGKRISTVVNIGIGGSDLGPVMVYQALRHYADAGISARFVSNV  165
usage_00008.pdb       121  RMAAFADGIRSGALKGATGRKITDIVNIGIGGSDLGPVMATLALAPYH-DEPRAHFVSNI  179
usage_00009.pdb       121  RMAAFADGIRSGALKGATGRKITDIVNIGIGGSDLGPVMATLALAPYH-DEPRAHFVSNI  179
usage_00010.pdb       121  RMAAFADGIRSGALKGATGRKITDIVNIGIGGSDLGPVMATLALAPYH-DEPRAHFVSNI  179
usage_00011.pdb       120  RMAAFADGIRSGALKGATGRKITDIVNIGIGGSDLGPVMATLALAPYH-DEPRAHFVSNI  178
                           rMaAFaDgiRSGalkGATGrkItdiVNIGIGGSDLGPVMatlALapYh deprAhFVSNi

usage_00006.pdb       166  DPADLIATLADLDPATTLFIVASKTFSTLETLTNATAARRWLTDALGDAAVSRHFVAVST  225
usage_00008.pdb       180  DGAHIADTLSPLDPASTLIIVASKTFTTIETMTNAQTARKWVADTLGEAAVGAHFAAVST  239
usage_00009.pdb       180  DGAHIADTLSPLDPASTLIIVASKTFTTIETMTNAQTARKWVADTLGEAAVGAHFAAVST  239
usage_00010.pdb       180  DGAHIADTLSPLDPASTLIIVASKTFTTIETMTNAQTARKWVADTLGEAAVGAHFAAVST  239
usage_00011.pdb       179  DGAHIADTLSPLDPASTLIIVASKTFTTIETMTNAQTARKWVADTLGEAAVGAHFAAVST  238
                           DgAhiadTLspLDPAsTLiIVASKTFtTiETmTNAqtARkWvaDtLGeAAVgaHFaAVST

usage_00006.pdb       226  NKRLVDDFGINTDNMFGFWDWVGGRYSVDSAIGLSLMTVIGRDAFADFLAGFHIIDRHFA  285
usage_00008.pdb       240  ALDKVAAFGIPEDRVFGFWDWVGGRYSVWSAIGLPVMIAVGPDNFRKFLAGAHAMDVHFR  299
usage_00009.pdb       240  ALDKVAAFGIPEDRVFGFWDWVGGRYSVWSAIGLPVMIAVGPDNFRKFLAGAHAMDVHFR  299
usage_00010.pdb       240  ALDKVAAFGIPEDRVFGFWDWVGGRYSVWSAIGLPVMIAVGPDNFRKFLAGAHAMDVHFR  299
usage_00011.pdb       239  ALDKVAAFGIPEDRVFGFWDWVGGRYSVWSAIGLPVMIAVGPDNFRKFLAGAHAMDVHFR  298
                           aldkVaaFGIpeDrvFGFWDWVGGRYSVwSAIGLpvMiavGpDnFrkFLAGaHamDvHFr

usage_00006.pdb       286  TAPLESNAPVLLGLIGLWYSNFFGAQSRTVLPYSNDLSRFPAYLQQLTMESNGKSTRADG  345
usage_00008.pdb       300  DAPLEKNLPVMLGLIGYWHRAICGYGSRAIIPYDQRLSRLPAYLQQLDMESNGKSVTLDG  359
usage_00009.pdb       300  DAPLEKNLPVMLGLIGYWHRAICGYGSRAIIPYDQRLSRLPAYLQQLDMESNGKSVTLDG  359
usage_00010.pdb       300  DAPLEKNLPVMLGLIGYWHRAICGYGSRAIIPYDQRLSRLPAYLQQLDMESNGKSVTLDG  359
usage_00011.pdb       299  DAPLEKNLPVMLGLIGYWHRAICGYGSRAIIPYDQRLSRLPAYLQQLDMESNGKSVTLDG  358
                           dAPLEkNlPVmLGLIGyWhraicGygSRaiiPYdqrLSRlPAYLQQLdMESNGKSvtlDG

usage_00006.pdb       346  SPVSADTGEIFWGEPGTNGQHAFYQLLHQGTRLVPADFIGFAQPLDDLPTAEGTG--SMH  403
usage_00008.pdb       360  KPVSGPTGPVVWGEPGTNGQHAFFQLLHQGTDTIPLEFIVAAKGHEPT-------LDHQH  412
usage_00009.pdb       360  KPVSGPTGPVVWGEPGTNGQHAFFQLLHQGTDTIPLEFIVAAKGHEPT-------LDHQH  412
usage_00010.pdb       360  KPVSGPTGPVVWGEPGTNGQHAFFQLLHQGTDTIPLEFIVAAKGHEPT-------LDHQH  412
usage_00011.pdb       359  KPVSGPTGPVVWGEPGTNGQHAFFQLLHQGTDTIPLEFIVAAKGHEPT-------LDHQH  411
                           kPVSgpTGpvvWGEPGTNGQHAFfQLLHQGTdtiPleFIvaAkghept         hqH

usage_00006.pdb       404  DLLMSNFFAQTQVLAF  419
usage_00008.pdb       413  EMLMANCLA-------  421
usage_00009.pdb       413  EMLMANCLAQSEALM-  427
usage_00010.pdb       413  EMLMANCLAQSEALM-  427
usage_00011.pdb       412  EMLMANCLAQSEALM-  426
                           emLMaNclA       


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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