################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:32:23 2021 # Report_file: c_0408_4.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00001.pdb # 2: usage_00002.pdb # 3: usage_00004.pdb # 4: usage_00007.pdb # 5: usage_00009.pdb # 6: usage_00011.pdb # 7: usage_00023.pdb # 8: usage_00028.pdb # 9: usage_00033.pdb # 10: usage_00038.pdb # 11: usage_00040.pdb # # Length: 116 # Identity: 2/116 ( 1.7%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 5/116 ( 4.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 52/116 ( 44.8%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 -----MFFLFS-----DMLLYTSKSVTGASH--FRI---RGFLPLRGMLV-EE--SE--N 40 usage_00002.pdb 1 -----WVVFTN-----FCLFFYKTH----QD--DYP---LASLPLLGYSV-SLDS----- 35 usage_00004.pdb 1 -WQKLWVVFTN-----FCLFFYKSH----QD--NHP---LASLPLLGYSL-TI------- 37 usage_00007.pdb 1 -----WCSVRD-----NHLHFYQDR----NR--SKV--AQQPLSLVGCEV-VP--DP--S 37 usage_00009.pdb 1 -----WFVLVD-----RCLFYYKDE----KE--ESI---LGSIPLLSFRV-AA--VQ--P 36 usage_00011.pdb 1 ----RWFVLSD-----LCLFYYRDE----KE--EGI---LGSILLPSFQI-AL--LT--S 37 usage_00023.pdb 1 LWKRRWFVLSG-----HCLFYYKDS----RE--ESV---LGSVLLPSYNI-RP--DG--P 41 usage_00028.pdb 1 -----FFVLVQVSQYTFAMCSYREK-----K--AEP---QELLQLDGYTV-DY--TDPQP 42 usage_00033.pdb 1 ----RWFVLVD-----RCLFYYKDE----KE--ESI---LGSIPLLSFRV-AA--VQ--P 37 usage_00038.pdb 1 -----YVVLRG-----HSLYLYKDK----RE-QTTPSEEEQPISVNACLI-DI--SY--S 40 usage_00040.pdb 1 -----FFHLIQLGDGSYNLNFYKDE----KIS-KEP---KGSIFLDSCMGVVQ--N---N 42 l y l usage_00001.pdb 41 EW---SVLHCFTIYA-AQK-TIVVAASTRLEKEKWMQDLNAAIQAA---------- 81 usage_00002.pdb 36 IH---K-DYVFKLQF-KSH-VYFFRAESKYTFERWMDVIKRA-------------- 71 usage_00004.pdb 38 --------YVFKLHF-KSH-VYYFRAESEYTFERWMEVIRSA-------------- 69 usage_00007.pdb 38 ---PDH-LYSFRILH-KGEELAKLEAKSSEEMGHWLGLLLSE-------------- 74 usage_00009.pdb 37 SDNISR-KHTFKAEHAGVR-TYFFSAESPEEQEAWIQAMGEAA------------- 77 usage_00011.pdb 38 EDHINR-KYAFKAAHPNMR-TYYFCTDTGKEMELWMKAMLDAA------------- 78 usage_00023.pdb 42 GAPRGR-RFTFTAEHPGMR-TYVLAADTLEDLRGWLRALGRA-------------- 81 usage_00028.pdb 43 G-LEGG-RAFFNAVK-EGD-TVIFASDDEQDRILWVQAMYRAT------------- 81 usage_00033.pdb 38 SDNISR-KHTFKAEHAGVR-TYFFSAESPEEQEAWIQAMGEAAR------------ 79 usage_00038.pdb 41 --ETKR-KNVFRLTT-SDC-ECLFQAEDRDDMLAWIKTIQESSN------------ 79 usage_00040.pdb 43 ---KVR-RFAFELKMQDKS-SYLLAADSEVEMEEWITILNKILQLNFEAAMQEKRN 93 F W #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################