################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 02:23:04 2021 # Report_file: c_0425_1.html ################################################################################################ #==================================== # Aligned_structures: 20 # 1: usage_00001.pdb # 2: usage_00002.pdb # 3: usage_00012.pdb # 4: usage_00013.pdb # 5: usage_00017.pdb # 6: usage_00019.pdb # 7: usage_00022.pdb # 8: usage_00023.pdb # 9: usage_00024.pdb # 10: usage_00025.pdb # 11: usage_00026.pdb # 12: usage_00027.pdb # 13: usage_00028.pdb # 14: usage_00036.pdb # 15: usage_00037.pdb # 16: usage_00042.pdb # 17: usage_00043.pdb # 18: usage_00049.pdb # 19: usage_00050.pdb # 20: usage_00054.pdb # # Length: 65 # Identity: 5/ 65 ( 7.7%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 11/ 65 ( 16.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 17/ 65 ( 26.2%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 -NARPPGVPARFSGSLTGDKAVLTITGAQTEDEAIYFCALWYS--N-HWVFGGG-TKLTV 55 usage_00002.pdb 1 -NDRPSGIPERFSGSNSGNTATLTISGTQAEDEADYYCGTWDM-VT-NNVFGGG-TKLT- 55 usage_00012.pdb 1 -NKRPSDISSRFSGSQSGGTASLTISGLQSEDEAYYHCNAF-------EFFGGG-TKLTV 51 usage_00013.pdb 1 GTKQNGRL--SATTVATERYSLLYISSSQTTDSGVYFCAALIQ-GA-QKLVFGQGTRLTI 56 usage_00017.pdb 1 -NKRPSGVSDRFSGSKSGNSASLTISGLQAEDEADYYCSSYDGSST-SVVFGGG-TKLTV 57 usage_00019.pdb 1 -NNRPSGVSHRFSGSKSGNTASLTISGLQAEDEADYYCSSYTR-RD-TYVFGTG-TKVTV 56 usage_00022.pdb 1 -TKRPSNIPSRFSGSKSGSTATLTITGVRAEDEAVYYCGSADD-NMNPTIFGAG-TTLTV 57 usage_00023.pdb 1 -SERPSGIPERFSGSSSGTTVTLTISGVQAEDEADYYCQSADS-SGTYVVFGGG-TKLTV 57 usage_00024.pdb 1 GLEEKGRF--SSFLSRSKGYSYLLLKELQMKDSASYLCASIDS-NY-QLIWGAG-TKLII 55 usage_00025.pdb 1 -NNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYFCALWYS--N-HLVFGGG-TKLTV 55 usage_00026.pdb 1 -SKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQAWDS-FS-TFVFGTG-TKVT- 55 usage_00027.pdb 1 -SKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQAWDS-FS-TFVFGTG-TKVTV 56 usage_00028.pdb 1 -YKRPSGIPDRFSGSKSGSTATLTIRGTQATDEADYYCQVWDS-FS-TFVFGSG-TQVTV 56 usage_00036.pdb 1 -TNRPSGISNRFSGSKFGNTASLTISGLQAEDEADYYCAAYTV-AS-TLLFGGG-TKVTV 56 usage_00037.pdb 1 -TNRPSGISNRFSGSKFGNTASLTISGLQAEDEADYYCAAYTV-AS-TLLFGGG-TKVT- 55 usage_00042.pdb 1 -TQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYCQAWDN--S-ASIFGGG-TKLTV 55 usage_00043.pdb 1 -SRRPSGISDRFSGSKSGNTASLTISGLQAEDEADYYCNSYTT-LS-TWLFGGG-TKVTV 56 usage_00049.pdb 1 -NKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEG-SD-NFVFGTG-TKVT- 55 usage_00050.pdb 1 -NKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEG-SD-NFVFGTG-TKVTV 56 usage_00054.pdb 1 -SKRPSGVSDRFSGSKSGNTASLTISGLQAEDEADYYCCSYRT-GG-TYIFGTG-TRLTV 56 s L q D a Y C g g T t usage_00001.pdb ----- usage_00002.pdb ----- usage_00012.pdb ----- usage_00013.pdb 57 NP--- 58 usage_00017.pdb ----- usage_00019.pdb ----- usage_00022.pdb ----- usage_00023.pdb ----- usage_00024.pdb 56 KPDIQ 60 usage_00025.pdb 56 L---- 56 usage_00026.pdb ----- usage_00027.pdb ----- usage_00028.pdb ----- usage_00036.pdb ----- usage_00037.pdb ----- usage_00042.pdb ----- usage_00043.pdb 57 LA--- 58 usage_00049.pdb ----- usage_00050.pdb ----- usage_00054.pdb 57 LG--- 58 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################