################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:58:22 2021 # Report_file: c_0660_1.html ################################################################################################ #==================================== # Aligned_structures: 13 # 1: usage_00002.pdb # 2: usage_00003.pdb # 3: usage_00009.pdb # 4: usage_00010.pdb # 5: usage_00011.pdb # 6: usage_00012.pdb # 7: usage_00013.pdb # 8: usage_00014.pdb # 9: usage_00015.pdb # 10: usage_00024.pdb # 11: usage_00031.pdb # 12: usage_00033.pdb # 13: usage_00036.pdb # # Length: 70 # Identity: 7/ 70 ( 10.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 14/ 70 ( 20.0%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 22/ 70 ( 31.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00002.pdb 1 RICFNHQS--SQPQTTKTC-SPGESSCYHKQWSDFRGTIIERGCGC---PTV-K-----P 48 usage_00003.pdb 1 RICYNHQS--TTRATTKSC-E--ENSCYKKYWRDHRGTIIERGCGC---PKV-K-----P 46 usage_00009.pdb 1 RICYNHLG--TKPPTTETC-Q--EDSCYKNIW-TFD-NIIRRGCGCF--TPR-GDM---P 47 usage_00010.pdb 1 RICFNHQS--SQPQTTKTC-SPGESSCYNKQWSDFRGTIIERGCGC---PTV-K-----P 48 usage_00011.pdb 1 RICFNHQS--SQPQTTKTC-SPGESSCYNKQWSDFRGTIIERGCGC---PTV-K-----P 48 usage_00012.pdb 1 TKCYNHQS--TTPETTEIC-PDSGYFCYKSSWIDGREGRIERGCTF-TCPEL-T-----P 50 usage_00013.pdb 1 TKCYNHQS--TTPETTEIC-PDSGYFCYKSSWIDGREGRIERGCTF-TCPEL-T-----P 50 usage_00014.pdb 1 RICFNHQG--SQPQTTKTC-SPGESSCYNKQWSDFRGTIIERGCGC---PTV-K-----P 48 usage_00015.pdb 1 LECHNQQS--SQTPTTTGC-SGGENNCYKKEWRDNRGYRTERGCGC---PSV-K-----K 48 usage_00024.pdb 1 MKCKICNFDTCRAGELKVCASGE-KYCFKESWREARGTRIERGCAA---TCP-K--GSVY 53 usage_00031.pdb 1 RICFNHQS--SQPQTTKTC-SPGESSCYNKQWSDFRGTIIERGCGC---PTV-K-----P 48 usage_00033.pdb 1 LECHNQQS--SQPPTTKTC-SPGETNCYKKVWRDHRGTIIERGCGC---PTV-K-----P 48 usage_00036.pdb 1 RICYNHLG--TKPPTTETC-Q--EDSCYKNIW-TFDN-IIRRGCGC---FTPRG-----D 45 C n tt C Cy W i RGC usage_00002.pdb 49 -GIKLSCCE- 56 usage_00003.pdb 47 -GVGIHCCQ- 54 usage_00009.pdb 48 -GPYCCE--- 53 usage_00010.pdb 49 -GIKLSCCE- 56 usage_00011.pdb 49 -GIKLSCCE- 56 usage_00012.pdb 51 NGKYVYCC-- 58 usage_00013.pdb 51 NGKYVYCCR- 59 usage_00014.pdb 49 -GIKLSCCE- 56 usage_00015.pdb 49 -GIGINCC-- 55 usage_00024.pdb 54 -GLYVLCCTT 62 usage_00031.pdb 49 -GIKLSCCE- 56 usage_00033.pdb 49 -GIKLNCCT- 56 usage_00036.pdb 46 -MPGPYC-CE 53 g c #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################