################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:15:44 2021 # Report_file: c_0204_3.html ################################################################################################ #==================================== # Aligned_structures: 10 # 1: usage_00002.pdb # 2: usage_00008.pdb # 3: usage_00013.pdb # 4: usage_00014.pdb # 5: usage_00024.pdb # 6: usage_00025.pdb # 7: usage_00026.pdb # 8: usage_00027.pdb # 9: usage_00031.pdb # 10: usage_00032.pdb # # Length: 257 # Identity: 64/257 ( 24.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 64/257 ( 24.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 86/257 ( 33.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00002.pdb 1 NYLEVCYILLNGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGA 60 usage_00008.pdb 1 NYLEVCYILLNGEKPTQEQYDEFKTTVTLHTMIHEQITRLFHAFRRDSHPMAVMCGITGA 60 usage_00013.pdb 1 NYLEVCYILLNGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGA 60 usage_00014.pdb 1 -YLEVCYILLNGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGA 59 usage_00024.pdb 1 -YEEVIYLLLNGELPNKAQYDTFTNTLTNHTLLHEQIRNFFNGFRRDAHPMAILCGTVGA 59 usage_00025.pdb 1 -YEEVIYLLLNGELPNKAQYDTFTNTLTNHTLLHEQIRNFFNGFRRDAHPMAILCGTVGA 59 usage_00026.pdb 1 -YEEVIYLLLNGELPNKAQYDTFTNTLTNHTLLHEQIRNFFNGFRRDAHPMAILCGTVGA 59 usage_00027.pdb 1 -YEEVIYLLLNGELPNKAQYDTFTNTLTNHTLLHEQIRNFFNGFRRDAHPMAILCGTVGA 59 usage_00031.pdb 1 -YRTLCYALIYGELPTDEQVKSFRQEIINKMPVCEHVKAAIAAMPQHTHPMSSLIAGVNV 59 usage_00032.pdb 1 -YRTLCYALIYGELPTDEQVKSFRQEIINKMPVCEHVKAAIAAMPQHTHPMSSLIAGVNV 59 Y Y L GE P Q F E HPM usage_00002.pdb 61 LAAFYHDSLDVNNPR------HREIAAFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSYA 114 usage_00008.pdb 61 LAAFYHDSLDVNNPR------HREIAAFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSYA 114 usage_00013.pdb 61 LAAFYHDSLDVNNPR------HREIAAFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSYA 114 usage_00014.pdb 60 LAAFYHDSLDVNNPR------HREIAAFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSYA 113 usage_00024.pdb 60 LSAFYP--------A------NRDLAAMRLIAKIPTIAAWAYKYTQGEAFIYPRNDLNYA 105 usage_00025.pdb 60 LSAFYPDANDIAIPA------NRDLAAMRLIAKIPTIAAWAYKYTQGEAFIYPRNDLNYA 113 usage_00026.pdb 60 LSAFYP---------------NRDLAAMRLIAKIPTIAAWAYKYTQGEAFIYPRNDLNYA 104 usage_00027.pdb 60 LSAFYPD------PA------NRDLAAMRLIAKIPTIAAWAYKYTQGEAFIYPRNDLNYA 107 usage_00031.pdb 60 LAAEHI---------HNGQKESQDEVAKNIVAKIATIAAMAYRHNHGKKFLEPKMEYGYA 110 usage_00032.pdb 60 LAAEHI---------HNGQKESQDEVAKNIVAKIATIAAMAYRHNHGKKFLEPKMEYGYA 110 L A A K T AA Y G F P YA usage_00002.pdb 115 GNFLNMMFSTPCE-PYEVNPILERAMDRILILHADHEQNASTSTVRTAGSSGANPFACIA 173 usage_00008.pdb 115 GNFLNMMFSTPCE-PYEVNPILERAMDRILILHADHEQNASTSTVRTAGSSGANPFACIA 173 usage_00013.pdb 115 GNFLNMMFSTPCE-PYEVNPILERAMDRILILHADHEQNASTSTVRTAGSSGANPFACIA 173 usage_00014.pdb 114 GNFLNMMFSTPCE-PYEVNPILERAMDRILILHADHEQNASTSTVRTAGSSGANPFACIA 172 usage_00024.pdb 106 ENFLSMMFARMSE-PYKVNPVLARAMNRILILHADHEQNASTSTVRLAGSTGANPFACIA 164 usage_00025.pdb 114 ENFLSMMFARMSE-PYKVNPVLARAMNRILILHADHEQNASTSTVRLAGSTGANPFACIA 172 usage_00026.pdb 105 ENFLSMMFARMSE-PYKVNPVLARAMNRILILHADHEQNASTSTVRLAGSTGANPFACIA 163 usage_00027.pdb 108 ENFLSMMFARMSE-PYKVNPVLARAMNRILILHADHEQNASTSTVRLAGSTGANPFACIA 166 usage_00031.pdb 111 ENFLYMMFADD--ESYKPDELHIKAMDTIFMLHADHEQNASTSTVRLSGSTGNSPYAAII 168 usage_00032.pdb 111 ENFLYMMFADD--ESYKPDELHIKAMDTIFMLHADHEQNASTSTVRLSGSTGNSPYAAII 168 NFL MMF Y AM I LHADHEQNASTSTVR GS G P A I usage_00002.pdb 174 AGIASLWGPAHGGA--------------NEAA--------------L------------- 192 usage_00008.pdb 174 AGIASLWGPAHGGANEAALKMLEEIS-SVKHIPEFFRRAKDKNDSFRLMGFGHRVYKNYD 232 usage_00013.pdb 174 AGIASLWGPAHGGANEAALKMLEEIG-KKENIPE------------FVRR---------- 210 usage_00014.pdb 173 AGIASLWGPAHGGANEAALKMLE------------------------------------- 195 usage_00024.pdb 165 AGIAALWGPA-------HGGANEAVLKMLARIGKKENI--------PAFI---------- 199 usage_00025.pdb 173 AGIAALWGPA-------HGGANEAVLKMLARIGKKENI--------PAFI---------- 207 usage_00026.pdb 164 AGIAALWGPA-------HGGANEAVLKMLARIGKKENI--------PAFI---------- 198 usage_00027.pdb 167 AGIAALWGPA-------HGGANEAVLKMLARIGKKENI--------PAFI---------- 201 usage_00031.pdb 169 AGITALWGPA-------HGGANEAVLKMLSEIGSTENI--------DKYI---------- 203 usage_00032.pdb 169 AGITALWGPA-------HGGANEAVLKMLSEI---------------------------- 193 AGI LWGPA usage_00002.pdb ----------------- usage_00008.pdb 233 PRATVMRETCHEVLKEL 249 usage_00013.pdb 211 ---AKD----------- 213 usage_00014.pdb ----------------- usage_00024.pdb 200 ---AQVKD--------- 204 usage_00025.pdb 208 ---AQVKD--------- 212 usage_00026.pdb 199 ---AQVK---------- 202 usage_00027.pdb 202 ---AQVKD--------- 206 usage_00031.pdb 204 ---AKAKD--------K 209 usage_00032.pdb ----------------- #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################