################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:54:29 2021 # Report_file: c_1219_101.html ################################################################################################ #==================================== # Aligned_structures: 12 # 1: usage_00153.pdb # 2: usage_00335.pdb # 3: usage_00336.pdb # 4: usage_00337.pdb # 5: usage_00344.pdb # 6: usage_00534.pdb # 7: usage_00535.pdb # 8: usage_01468.pdb # 9: usage_01469.pdb # 10: usage_01516.pdb # 11: usage_02095.pdb # 12: usage_02100.pdb # # Length: 51 # Identity: 4/ 51 ( 7.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 30/ 51 ( 58.8%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 21/ 51 ( 41.2%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00153.pdb 1 TVLPTFKGQPSKPFV---GVLSA------GINAASPNKELAKEFLENYLLT 42 usage_00335.pdb 1 --LPTFKGQPSKPFV---GVLSA------GINAASPNKELAKEFLENY--- 37 usage_00336.pdb 1 ---PTFKGQPSKPFV---GVLSA------GINAASPNKELAKEFLENY--- 36 usage_00337.pdb 1 --LPTFKGQPSKPFV---GVLSA------GINAASPNKELAKEFLENY--- 37 usage_00344.pdb 1 -------RIPVFEGERSNIVDLLFVKDLAFVDPDDCT--PLKTITKFY--- 39 usage_00534.pdb 1 --LPTFKGQPSKPFV---GVLSA------GINAASPNKELAKEFLENY--- 37 usage_00535.pdb 1 --LPTFKGQPSKPFV---GVLSA------GINAASPNKELAKEFLENY--- 37 usage_01468.pdb 1 TVLPTFKGQPSKPFV---GVLSA------GINAASPNKELAKEFLENYLLT 42 usage_01469.pdb 1 TVLPTFKGQPSKPFV---GVLSA------GINAASPNKELAKEFLENY--- 39 usage_01516.pdb 1 --LPTFKGQPSKPFV---GVLSA------GINAASPNKELAKEFLENY--- 37 usage_02095.pdb 1 --LPTFKGQPSKPFV---GVLSA------GINAASPNKELAKEFLENYL-- 38 usage_02100.pdb 1 TVLPTFKGQPSKPFV---GVLSA------GINAASPNKELAKEFLENYL-- 40 gqPskpfv gVlsa ginaaspn laKeflenY #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################