################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:19:51 2021 # Report_file: c_1256_448.html ################################################################################################ #==================================== # Aligned_structures: 5 # 1: usage_00100.pdb # 2: usage_01195.pdb # 3: usage_01197.pdb # 4: usage_02618.pdb # 5: usage_04127.pdb # # Length: 39 # Identity: 2/ 39 ( 5.1%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 5/ 39 ( 12.8%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 15/ 39 ( 38.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00100.pdb 1 QTLDLTGKNLHPDVT-----GRLLSQ----GVIAFRCPR 30 usage_01195.pdb 1 TTLDLSGNGFKESMA-----KRFFDAIAGTKIQSLIL-- 32 usage_01197.pdb 1 TTLDLSGNGFKESMA-----KRFFDAIAGTKIQSLIL-- 32 usage_02618.pdb 1 -HLNLKGNHFQD---GTITKTNLLQTV--GSLEVLIL-- 31 usage_04127.pdb 1 -ALLLNNAQLNPHLT-----EKLCWELSNTSIQNLSL-- 31 L L g l l #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################