################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:12:55 2021 # Report_file: c_1230_104.html ################################################################################################ #==================================== # Aligned_structures: 9 # 1: usage_00005.pdb # 2: usage_00086.pdb # 3: usage_00107.pdb # 4: usage_00108.pdb # 5: usage_00110.pdb # 6: usage_00111.pdb # 7: usage_00205.pdb # 8: usage_00300.pdb # 9: usage_01409.pdb # # Length: 59 # Identity: 23/ 59 ( 39.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 31/ 59 ( 52.5%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 10/ 59 ( 16.9%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00005.pdb 1 PYVLPVPFLNVLNGGSHAGGALALQEFMIAPTGAKTFAEALRIGSEVYHNLKSLTKKR- 58 usage_00086.pdb 1 -----VPCFNVINGGKHAGNALPFQEFMIAPVKATSFSEALRMGSEVYHSLKGIIKKK- 53 usage_00107.pdb 1 ------PCFNVINGGKHAGNALPFQEFMIAPVKATSFSEALRMGSEVYHSLRGIIKKK- 52 usage_00108.pdb 1 ------PCFNVINGGKHAGNALPFQEFMIAPVKATSFSEALRMGSEVYHSLRGIIKKK- 52 usage_00110.pdb 1 -----VPCFNVINGGKHAGNALPFQEFMIAPVKATSFSEALRMGSEVYHSLRGIIKKK- 53 usage_00111.pdb 1 -----VPCFNVINGGKHAGNALPFQEFMIAPVKATSFSEALRMGSEVYHSLRGIIKKK- 53 usage_00205.pdb 1 -----VPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKG 54 usage_00300.pdb 1 PYVLPVPFLNVLNGGSHAGGALALQEFMIAPTGAKTFAEALRIGSEVYHNLKSLT---- 55 usage_01409.pdb 1 ------PCFNVINGGKHAGNALPFQEFMIAPVKATSFSEALRMGSEVYHSLRGIIKKK- 52 P Nv NGG HAg al QEFMIaP A f EAlR GSEVyH L #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################