################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:15:14 2021 # Report_file: c_0119_5.html ################################################################################################ #==================================== # Aligned_structures: 10 # 1: usage_00012.pdb # 2: usage_00070.pdb # 3: usage_00072.pdb # 4: usage_00073.pdb # 5: usage_00075.pdb # 6: usage_00137.pdb # 7: usage_00158.pdb # 8: usage_00173.pdb # 9: usage_00266.pdb # 10: usage_00292.pdb # # Length: 117 # Identity: 40/117 ( 34.2%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 50/117 ( 42.7%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 24/117 ( 20.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00012.pdb 1 --ALTQPPSASGSLGQSVTISCTGTSSDVGGY--NYVSWYQQHAGKAPKVIIYEVNKRPS 56 usage_00070.pdb 1 --VLTQPPSASGSPGQSVTISCTGTSSDVGGY--NYVSWYQHHPGKAPKLIISEVNNRPS 56 usage_00072.pdb 1 -SALTQPASVSGSPGQSINISCAG--------RSDRVSWYQQRPNGVPKLLMFDVYRRPS 51 usage_00073.pdb 1 -SALTQPASVSGSPGQSINISCAG--------RSDRVSWYQQRPNGVPKLLMFDVYRRPS 51 usage_00075.pdb 1 --ALTQPPSASGSPGQSITISCTG----T-SN--NFVSWYQQHAGKAPKLVIYDVNKRPS 51 usage_00137.pdb 1 ---LTQPPSVSGAPGQRVTISCTGSSSNIGAG--YDVHWYQQLPGTAPKLLIYDNFNRPS 55 usage_00158.pdb 1 --ALTQPPSASGSLGQSVTISCTGTSSDVGGY--NYVSWYQQHAGKAPKVIIYEVNKRPS 56 usage_00173.pdb 1 --ALTQPPSVSGAPGQRVTIPCTGGSSNIGAG--YSVHWYQQLPGTAPKLLIYGSNSRPS 56 usage_00266.pdb 1 -SALTQPPSASGSLGQSVTISCTGTSSNVGGY--NYVSWYQQHAGKAPKVIIYEVNKRPS 57 usage_00292.pdb 1 NFMLTQPHSVSESPGKTVTISCTRSSGSIA-S--NYVQWYQQRPGSSPTTVIYEDNQRPS 57 LTQP S Sg Gq IsC g V WYQq Pk RPS usage_00012.pdb 57 GVPDRFSGSKSG--NTASLTVSGLQAEDEADYYCSSYEGS--DNFVFGTGTKVTV-- 107 usage_00070.pdb 57 GVPDRFSGSKSG--NTASLTVSGLQAEDEAEYYCSSYTDI--HNFVFGGGTKLTV-- 107 usage_00072.pdb 52 GVSDRFSGSHSG--DTAFLTISGLQTEDEADYYCTSHP------YAFGAGTKVNV-- 98 usage_00073.pdb 52 GVSDRFSGSHSG--DTAFLTISGLQTEDEADYYCTSHP------YAFGAGTKVNV-- 98 usage_00075.pdb 52 GVPDRFSGSKSG--NTASLTVSGLQTDDEAVYYCGSLVGN--WDVIFGGGTKLT--- 101 usage_00137.pdb 56 GVPDRFSGSKSG--TSASLAITGLQAEDEADYYCQSYDSPT-LTSPFGTGTKLTV-- 107 usage_00158.pdb 57 GVPDRFSGSKSG--NTASLTVSGLQAEDEADYYCSSYEGS--DNFVFGTGTKVTV-- 107 usage_00173.pdb 57 GVPDRFSGSKSG--TSASLAITGLRPEDEADYYCQSYDSSLSGSQVFGAGTRVTVLG 111 usage_00266.pdb 58 GVPDRFSGSKSG--NTASLTVSGLQAEDEADYYCSSYEGS--DNFVFGTGTKVTV-- 108 usage_00292.pdb 58 GVPDRFSGSIDSSSNSASLTISGLKTEDEADYYCQSYDSS--S-WVFGGGTKLT--- 108 GV DRFSGS sg A L GL eDEA YYC S FG GTk #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################