################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:33:10 2021 # Report_file: c_0634_2.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00001.pdb # 2: usage_00002.pdb # 3: usage_00003.pdb # 4: usage_00016.pdb # 5: usage_00028.pdb # 6: usage_00049.pdb # 7: usage_00050.pdb # 8: usage_00051.pdb # 9: usage_00052.pdb # 10: usage_00078.pdb # 11: usage_00085.pdb # # Length: 144 # Identity: 20/144 ( 13.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 33/144 ( 22.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 49/144 ( 34.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 -----------------SEEEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGI 43 usage_00002.pdb 1 ---------------ERDRVQKKTFTKWVNKHLIKA------QRHIS---DLYEDLRDGH 36 usage_00003.pdb 1 ---------------ERDRVQKKTFTKWVNKHLIKA------QRHIS---DLYEDLRDGH 36 usage_00016.pdb 1 ----------------------GPFVQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGV 38 usage_00028.pdb 1 --------------DERDRVQKKTFTKWVNKHLMKV------RKHIN---DLYEDLRDGH 37 usage_00049.pdb 1 --------------DERDRVQKKTFTKWVNKHLIKA------QRHIS---DLYEDLRDGH 37 usage_00050.pdb 1 -----------------DRVQKKTFTKWVNKHLIKA------QRHIS---DLYEDLRDGH 34 usage_00051.pdb 1 NLYLAVLRASEGKKDERDRVQKKTFTKWVNKHLIKA------QRHIS---DLYEDLRDGH 51 usage_00052.pdb 1 ----------------RDRVQKKTFTKWVNKHLIKA------QRHIS---DLYEDLRDGH 35 usage_00078.pdb 1 ----------------RDRVQKKTFTKWVNKHLIKHWR-AEAQRHIS---DLYEDLRDGH 40 usage_00085.pdb 1 ------HMAVIRIADERDRVQKKTFTKWVNKHLIKHWR-AEAQRHIS---DLYEDLRDGH 50 F w Nk L dLye DG usage_00001.pdb 44 VLCKMINLSVPD---TIDERAINK-KKLTPFIIQENLNLALNSASAIGCHVVNIGAEDLR 99 usage_00002.pdb 37 NLISLLEVLSGDSLP------REK--GRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIA 88 usage_00003.pdb 37 NLISLLEVLSGDSLP------REK--GRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIA 88 usage_00016.pdb 39 LLCKLINVAVPG---TIDERAINTKRVLNPWERNENHTLCLNSAKAVGCSVVNIGTQDLA 95 usage_00028.pdb 38 NLISLLEVLSGIKLP------REK--GRMRFHRLQNVQIALDFLKQRQVKLVNIRNDDIT 89 usage_00049.pdb 38 NLISLLEVLSGDSLP------REK--GRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIA 89 usage_00050.pdb 35 NLISLLEVLSGDSLP------REK--GRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIA 86 usage_00051.pdb 52 NLISLLEVLSGDSLP------REK--GRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIA 103 usage_00052.pdb 36 NLISLLEVLSGDSLP------REK--GRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIA 87 usage_00078.pdb 41 NLISLLEVLSGDSLP------REK--GRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIA 92 usage_00085.pdb 51 NLISLLEVLSGDSLP------REK--GRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIA 102 L l v k f N aL VNI D usage_00001.pdb 100 AGKPHLVLGLLWQIIKIGLFADIE 123 usage_00002.pdb 89 DGNPKLTLGLIWTIILHFQ----- 107 usage_00003.pdb 89 DGNPKLTLGLIWTIILHFQ----- 107 usage_00016.pdb 96 EGRPHLVLGLISQLIKIQLLA--- 116 usage_00028.pdb 90 DGNPKLTLGLIWTIILHFQ----- 108 usage_00049.pdb 90 DGNPKLTLGLIWTIILHFQI---- 109 usage_00050.pdb 87 DGNPKLTLGLIWTIILHFQIS--- 107 usage_00051.pdb 104 DGNPKLTLGLIWTIILHFQIS-D- 125 usage_00052.pdb 88 DGNPKLTLGLIWTIILH------- 104 usage_00078.pdb 93 DGNPKLTLGLIWTIILHFQ----- 111 usage_00085.pdb 103 DGNPKLTLGLIWTIILHFQIS--- 123 G P L LGLiw iI #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################