################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:20:59 2021 # Report_file: c_0089_7.html ################################################################################################ #==================================== # Aligned_structures: 6 # 1: usage_00008.pdb # 2: usage_00034.pdb # 3: usage_00044.pdb # 4: usage_00045.pdb # 5: usage_00046.pdb # 6: usage_00056.pdb # # Length: 177 # Identity: 24/177 ( 13.6%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 47/177 ( 26.6%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 48/177 ( 27.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00008.pdb 1 -IFAVSVGLVKGEEPIVGAVYLPYFDKLYWGAKGLGAYVNGKRIKVKDNESLKHAGVVYG 59 usage_00034.pdb 1 PFFAVSVAIFHEKDPIYAFIYEPIVERLYEGIPGKGSYLNGEKIKVRELAEK--PSISFY 58 usage_00044.pdb 1 -FFAVSIALESQGKIVAGVIYNPINDELFTAERGSGAFFNDRRCRVSARRRLEDCVIATG 59 usage_00045.pdb 1 -FFAVSIALESQGKIVAGVIYNPINDELFTAERGSGAFFNDRRCRVSARRRLEDCVIATG 59 usage_00046.pdb 1 -FFAVSIALESQGKIVAGVIYNPINDELFTAERGSGAFFNDRRCRVSARRRLEDCVIATG 59 usage_00056.pdb 1 ----VSIAVRIKGRTEVAVVYDPMRNELFTATRGQGAQLNGYRLRGSTARDLDGTILATG 56 VS a Y P L G Ga N r v l g usage_00008.pdb 60 FPSRSRRDISIYLN-IFKDVFYEVGS-RRPGAAAVDLC-VAEGIFDGEFE--------KP 108 usage_00034.pdb 59 TK------------GKGTKIIDKVKRTRTLGAIALELAYLARGALDA---VVDIRNYLRP 103 usage_00044.pdb 60 -M---------YLI-ELRNVMAEVSGIRRFGTAALDLAYVAAGRTDG---FWED-N-LQI 103 usage_00045.pdb 60 MPHL--PGHGTYLI-ELRNVMAEVSGIRRFGTAALDLAYVAAGRTDG---FWED-N-LQI 111 usage_00046.pdb 60 MPHL--PGHGTYLI-ELRNVMAEVSGIRRFGTAALDLAYVAAGRTDG---FWED-N-LQI 111 usage_00056.pdb 57 FPFKAKQYATTYIN-IVGKLFNECADFRATGSAALDLAYVAAGRVDG---FFEI-G-LRP 110 ev R G aAldLa vA G Dg usage_00008.pdb 109 WDITAGLVILKEAGGVYTLVG----E-----PFGVSDIIAG-NKALHDFILQVAKKY 155 usage_00034.pdb 104 TDIAAGVVIAREAGAIVKDL-DGKDVEITFSATEKVNIIAANNEELLETILRS---- 155 usage_00044.pdb 104 WDMAAGILMVREAGGFVTDK-EGGND-----IFRKKNIIAG-NEHIRIKLERALK-- 151 usage_00045.pdb 112 WDMAAGILMVREAGGFVTDK-EGGND-----IFRKKNIIAG-NEHIRIKLERALKK- 160 usage_00046.pdb 112 WDMAAGILMVREAGGFVTDK-EGGND-----IFRKKNIIAG-NEHIRIKLERALKK- 160 usage_00056.pdb 111 WDFAAGELLVREAGGIVSDF-TGGHN-----YMLTGNIVAG-NPRVVKAMLANM--- 157 wD aAG rEAGg v d nIiAg N #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################