################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:05:28 2021 # Report_file: c_0447_13.html ################################################################################################ #==================================== # Aligned_structures: 4 # 1: usage_00035.pdb # 2: usage_00052.pdb # 3: usage_00092.pdb # 4: usage_00128.pdb # # Length: 138 # Identity: 34/138 ( 24.6%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 65/138 ( 47.1%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 42/138 ( 30.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00035.pdb 1 FEFTLMVVGESGLGKSTLINSLFLTDLIKKT--------VQVEQSKVLI-K-EVQLLLTI 50 usage_00052.pdb 1 FDFNIMVVGQSGLGKSTLVNTLFK-------SQVKIPKTVEIKAIGHVI-----KMKLTV 48 usage_00092.pdb 1 ITFTVMIVGQSGSGRSTFINT-L--------------------LREETVDDEGVKIQLNI 39 usage_00128.pdb 1 FEFNIMVVGQSGLGKSTLINTLFK----------RIPKTIEIKSITHDI-E--VRMKLTV 47 f F MvVGqSGlGkSTliNt f i Lt usage_00035.pdb 51 VDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRV-NR-RQMPDNRVQCCLYFIAPSG 108 usage_00052.pdb 49 IDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIAR-KKRIPDTRVHCCLYFISPTG 107 usage_00092.pdb 40 IDTPGFS-L-DNSPSFEIISDYIRHQYDEILLEESR----------GRVHCCLYLINPTG 87 usage_00128.pdb 48 IDTPGFGDHINNENCWQPIMKFINDQYEKYLQEEVNINR-KKRIPDTRVHCCLYFIPATG 106 iDTPGFg N ncw pi yI qye L eE RVhCCLYfI ptG usage_00035.pdb 109 HGLKPLDIEFMKRL---- 122 usage_00052.pdb 108 HSLRPLDLEFMKHLSKVV 125 usage_00092.pdb 88 HGLKEIDVEFIRQL---- 101 usage_00128.pdb 107 HSLRPLDIEFMKRLSKV- 123 H L plD EFmk L #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################