################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 09:19:30 2021 # Report_file: c_0116_4.html ################################################################################################ #==================================== # Aligned_structures: 66 # 1: usage_00002.pdb # 2: usage_00003.pdb # 3: usage_00004.pdb # 4: usage_00006.pdb # 5: usage_00009.pdb # 6: usage_00010.pdb # 7: usage_00011.pdb # 8: usage_00012.pdb # 9: usage_00013.pdb # 10: usage_00015.pdb # 11: usage_00019.pdb # 12: usage_00020.pdb # 13: usage_00021.pdb # 14: usage_00028.pdb # 15: usage_00032.pdb # 16: usage_00033.pdb # 17: usage_00034.pdb # 18: usage_00035.pdb # 19: usage_00036.pdb # 20: usage_00037.pdb # 21: usage_00038.pdb # 22: usage_00039.pdb # 23: usage_00051.pdb # 24: usage_00052.pdb # 25: usage_00057.pdb # 26: usage_00060.pdb # 27: usage_00065.pdb # 28: usage_00067.pdb # 29: usage_00098.pdb # 30: usage_00099.pdb # 31: usage_00100.pdb # 32: usage_00102.pdb # 33: usage_00104.pdb # 34: usage_00109.pdb # 35: usage_00120.pdb # 36: usage_00122.pdb # 37: usage_00123.pdb # 38: usage_00125.pdb # 39: usage_00127.pdb # 40: usage_00128.pdb # 41: usage_00129.pdb # 42: usage_00130.pdb # 43: usage_00131.pdb # 44: usage_00132.pdb # 45: usage_00138.pdb # 46: usage_00160.pdb # 47: usage_00161.pdb # 48: usage_00162.pdb # 49: usage_00167.pdb # 50: usage_00168.pdb # 51: usage_00169.pdb # 52: usage_00170.pdb # 53: usage_00171.pdb # 54: usage_00172.pdb # 55: usage_00175.pdb # 56: usage_00176.pdb # 57: usage_00177.pdb # 58: usage_00178.pdb # 59: usage_00179.pdb # 60: usage_00181.pdb # 61: usage_00185.pdb # 62: usage_00205.pdb # 63: usage_00207.pdb # 64: usage_00208.pdb # 65: usage_00209.pdb # 66: usage_00211.pdb # # Length: 116 # Identity: 11/116 ( 9.5%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 16/116 ( 13.8%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 22/116 ( 19.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00002.pdb 1 ---QMTQSPSSLSARVGDTVTITCQA----N-----GYLNWYQQRRGKAPKLLIYDGSKL 48 usage_00003.pdb 1 ---QMTQSPSSLSARVGDTVTITCQA----N-----GYLNWYQQRRGKAPKLLIYDGSKL 48 usage_00004.pdb 1 --IKMTQSPSSMYASLGERVTITCKASQDIR-----KYLNWYQQKPWKSPKTLIYYATSL 53 usage_00006.pdb 1 --IQMTQSPSSLSASVGDRVTITVQASQDII-----KHLNWYQQTPGKAPKLLIYEASNL 53 usage_00009.pdb 1 ---QMTQSPSSLSASVGDRVTITCRASKTIS-----KYLAWYQQKPGKAPKLLIYSGSTL 52 usage_00010.pdb 1 --LVLTQSPSSMYASLGERVTITCKASQDIN-----SYLNWFQQKPGKSPKTLIYRTNRL 53 usage_00011.pdb 1 --IQMTQSPSSLSASVGDRVTITCQASQDIS-----DYLIWYQQKLGKAPNLLIYDASTL 53 usage_00012.pdb 1 --IQMTQSPSSLSASVGDRVTITCQASQDIS-----DYLIWYQQKLGKAPNLLIYDASTL 53 usage_00013.pdb 1 --LQLTQSPSSLSASVGDRITITCRASQGVT-----SALAWYRQKPGSPPQLLIYDASSL 53 usage_00015.pdb 1 --IVMTQSPDSLAVSLGERATINCKASQSVS-----NDVAWYQQKPGQPPKLLIYYASNR 53 usage_00019.pdb 1 --IKMTQSPSSMYTSLGERVTITCKASQDIN-----SFLTWFLQKPGKSPKTLIYRANRL 53 usage_00020.pdb 1 --IKMTQSPSSMYTSLGERVTITCKASQDIN-----SFLTWFLQKPGKSPKTLIYRANRL 53 usage_00021.pdb 1 --LQLTQSPSSLSASVGDRITITCRASQGVT-----SALAWYRQKPGSPPQLLIYDASSL 53 usage_00028.pdb 1 --IQMTQSPSSLSASVGDRVTITCQASQDIS-----DYLIWYQQKLGKAPNLLIYDASTL 53 usage_00032.pdb 1 ---QMTQSPSSLSASVGDRVTITCQASQDIS-----NFLIWYQQKPGKAPKLLIYDASNL 52 usage_00033.pdb 1 -DIQMTQSPSSLSASVGDRVTITCQASQDIS-----NFLIWYQQKPGKAPKLLIYDASNL 54 usage_00034.pdb 1 --IQMTQSPSSLSASVGDRVTITCQASQDIS-----NFLIWYQQKPGKAPKLLIYDASNL 53 usage_00035.pdb 1 ---QMTQSPSSLSASVGDRVTITCQASQDIS-----NFLIWYQQKPGKAPKLLIYDASNL 52 usage_00036.pdb 1 --IKMTQSPSSMYASLGERVTITCKASQDIR-----KYLNWYQQKPWKSPKTLIYYATSL 53 usage_00037.pdb 1 --LQMTQSPSSLSASVGDRVTITCRASQDIS-----IRLNWYQQKPGKAPKLLIYDASTL 53 usage_00038.pdb 1 --LQMTQSPSSLSASVGDRVTITCRASQDIS-----IRLNWYQQKPGKAPKLLIYDASTL 53 usage_00039.pdb 1 -DIKLTQSPSLLSASVGDRVTLSCKGSQNIN-----NYLAWYQQKLGEAPKLLIYNTNSL 54 usage_00051.pdb 1 --TTVTQSPASLSVATGEKVTIRCITSTDID-----DDMNWYQQKPGERPKLLISEGNTL 53 usage_00052.pdb 1 -ALQLTQSPSSLSASVGDRITITCRASQGVT-----SALAWYRQKPGSPPQLLIYDASSL 54 usage_00057.pdb 1 ---ELTQSPASLSVATGEKVTIRCMTSTDID-----DDMNWYQQKPGEPPKFLISEGNTL 52 usage_00060.pdb 1 -AIQLTQSPSSLSASVGDRVTITCRASQGIS-----SALAWYQQKPGKAPKLLIYDASSL 54 usage_00065.pdb 1 --IQMTQSPSSLSPSVGDRVTITCQASQDIR-----NHLNWYQQKPGKAPKLLIYDASNL 53 usage_00067.pdb 1 --IQMTQSPSSLSASVGDRVTITCRASQDIT-----NYVNWFQQRPGQAPKVLIYGASIL 53 usage_00098.pdb 1 --TTVTQSPASLSVAIGEKVTIRCITSTDID-----DDMNWYQQKPGEPPKFFISEGNTL 53 usage_00099.pdb 1 --IKMTQSPASLSASLGDKVTITCQASQNID-----KYIAWYQQKPGKAPRQLIHYTSTL 53 usage_00100.pdb 1 -ALQLTQSPSSLSASVGDRITITCRASQGVT-----SALAWYRQKPGSPPQLLIYDASSL 54 usage_00102.pdb 1 --IQMTQSPSSLSASVGDRVTITCQASQDIS-----NYLNWYQQKPGKAPKLLIYDASNL 53 usage_00104.pdb 1 ---KMTQSPSSMYASLGERVTITCKASQGIN-----SDLSWFQQKPGKSPKTLIYRANRL 52 usage_00109.pdb 1 --IQMTQSPSSLSASVGDRVTITCQASQDIN-----NYLIWYQQKPGQAPKLLIYDASTL 53 usage_00120.pdb 1 --IQVTQSSSSFSVSLGDRVTITCKASEDIY-----NRLAWYQQKPGNAPRLLISGATSL 53 usage_00122.pdb 1 --LQLTQSPSSLSASVGDRITITCRASQGVT-----SALAWYRQKPGSPPQLLIYDASSL 53 usage_00123.pdb 1 ---QMTQSPASLSASVGETVTITCRASGNIH-----NYLSWFQQKQGKSPQLLVYSAKTL 52 usage_00125.pdb 1 -DIQMTQSPASLSASVGETVTITCRASGNIH-----NYLSWFQQKQGKSPQLLVYSAKTL 54 usage_00127.pdb 1 -YIQMTQSPASLSVSVGETVTITCRASENIY-----SFLAWYQQKQGKSPQLLVYAATNL 54 usage_00128.pdb 1 ---LMTQTPTIMSASIGEEITLTCSASSSVS------HMHWYQHKSGTSPKLLIYITSYL 51 usage_00129.pdb 1 ---LMTQTPTIMSASIGEEITLTCSASSSVS------HMHWYQHKSGTSPKLLIYITSYL 51 usage_00130.pdb 1 --IQVTQSPSSLSASVGDRVTITCITSTDID-----DDMNWYQQKPGKVPKLLISGGNTL 53 usage_00131.pdb 1 --IQVTQSPSSLSASVGDRVTITCITSTDID-----DDMNWYQQKPGKVPKLLISGGNTL 53 usage_00132.pdb 1 -DIQMTQSPSSLSASVGDRVTITCQASQDIS-----NYLIWYQQKPGKAPKLLIYDASNL 54 usage_00138.pdb 1 -DIQMTQSPSTLSASVGDRVTITCRASQSIS-----SWLAWYQQKPGKAPKLLIYDASSL 54 usage_00160.pdb 1 -DIQMTQSPSSLSASVGDRVTITCQASQDIS-----NYLNWYQQKPGKAPKLLIYDASNL 54 usage_00161.pdb 1 -DIQMTQSPSSLSASVGDRVTITCQASQDIS-----NYLNWYQQKPGKAPKLLIYDASNL 54 usage_00162.pdb 1 -DIQMTQSPSSLSASVGDRVTITCQASQDIS-----NYLNWYQQKPGKAPKLLIYDASNL 54 usage_00167.pdb 1 --IQLTQSPSSLSASVGDRVTITCQASQDIR-----KYLNWYQQKPGKAPNLLIYDASNV 53 usage_00168.pdb 1 -DIQLTQSPSSLSASVGDRVTITCQASQDIR-----KYLNWYQQKPGKAPNLLIYDASNV 54 usage_00169.pdb 1 -DIQLTQSPSSLSASVGDRVTITCQASQDIR-----KYLNWYQQKPGKAPNLLIYDASNV 54 usage_00170.pdb 1 ---QMTQSPSSLSASVGDRVTITCRSSQRIVHSNGNTYLEWYQQTPGKAPKLLIYKVSNR 57 usage_00171.pdb 1 ---QMTQSPSSLSASVGDRVTITCSASQDIS-----NYLNWYQQKPGKAPKVLIYFTSSL 52 usage_00172.pdb 1 --IQMTQSPSSLSASVGDRVTITCSASQDIS-----NYLNWYQQKPGKAPKVLIYFTSSL 53 usage_00175.pdb 1 --IQLTQSPSSLSASVGDRVTITCSASQDIS-----NYLNWYQQKPGKAPKVLIYFTSSL 53 usage_00176.pdb 1 ---QMTQSPSSLSASVGDRVTINCQAGQGIG-----SSLNWYQKKPGRAPKLLVHGASNL 52 usage_00177.pdb 1 --IQMTQSPSSLSASVGDRVTITCQASQDIS-----NYLIWYQQKPGKAPKLLIYDASNL 53 usage_00178.pdb 1 TDIQMTQSPSSLSASVGDRVTITCQASQDIS-----NYLIWYQQKPGKAPKLLIYDASNL 55 usage_00179.pdb 1 -AIQLTQSPSSLSASVGDRVTITCRASQGIS-----SALAWYQQKPGKAPKLLIYDASSL 54 usage_00181.pdb 1 --ILMTQSPSSMSVSLGDTVSITCHASQGIS-----SNIGWLQQKPGKSFMGLIYYGTNL 53 usage_00185.pdb 1 -DIQMNQSPSSLSASLGDTISITCRASQNIN-----IWLSWYQQKPGNVPKLLIYKASNL 54 usage_00205.pdb 1 -DIQMTQSPSSLSASVGDRVTITCSASSSVT------YMYWYQQKPGKAPKLLIYDTSNL 53 usage_00207.pdb 1 ---QMTQSPSSLSASVGDRVTITCQA--I-S-----NYLNWYQQKPGKAPKLLIYDASNL 49 usage_00208.pdb 1 -DIQMTQSPSSLSASVGDRVTITCQASQDIS-----NYLNWYQQKPGKAPKLLIYDASNL 54 usage_00209.pdb 1 --IVMTQTPKFLLVSAGDRVTITCKASQSVS-----NDVAWYQQKPGQSPKLLIYYASNR 53 usage_00211.pdb 1 --IQVTQSPSSLSASVGDRVTITCITSTDID-----DDMNWYQQKPGKVPKLLISGGNTL 53 tQ p G c W p l usage_00002.pdb 49 ERGVPARFSGRRWGQEYNLTINNLQPEDVATYFCQVY----EFIVPGT-RLDL--- 96 usage_00003.pdb 49 ERGVPARFSGRRWGQEYNLTINNLQPEDVATYFCQVY----EFIVPGT-RLDL--- 96 usage_00004.pdb 54 ADGVPSRFSGSGSGQDYSLTISSLESDDTATYYCLQHGESPYTFGGGT-KLEI--- 105 usage_00006.pdb 54 QAGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQQYQSLPYTFGQGT-KLQI--- 105 usage_00009.pdb 53 QSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQHNEYPLTFGQGT-KVEI--- 104 usage_00010.pdb 54 VDGVPSRFSGSGSGQDYSLTISSLEYEDMGIYYCLQYDEFPYTFGSGT-KLEI--- 105 usage_00011.pdb 54 ETGVPSRFSGSGSGTEYTFTISSLQPEDIATYYCQQYDDLPYTFGQGT-KVEI--- 105 usage_00012.pdb 54 ETGVPSRFSGSGSGTEYTFTISSLQPEDIATYYCQQYDDLPYTFGQGT-KVEI--- 105 usage_00013.pdb 54 ESGVPSRFSGSGSGTEFTLTISTLRPEDFATYYCQQLHFYPHTFGGGT-RVDV--- 105 usage_00015.pdb 54 YTGVPDRFSGSGSGTDFTLTISSLEAEDVAVYYCQQDYNSPWTFGGGT-KVEI--- 105 usage_00019.pdb 54 MIGVPSRFSGSGSGQTYSLTISSLEYEDMGIYYCLQYDDFPLTFGAGT-KLDL--- 105 usage_00020.pdb 54 MIGVPSRFSGSGSGQTYSLTISSLEYEDMGIYYCLQYDDFPLTFGAGT-KLDL--- 105 usage_00021.pdb 54 ESGVPSRFSGSGSGTEFTLTISTLRPEDFATYYCQQLHFYPHTFGGGT-RVDV--- 105 usage_00028.pdb 54 ETGVPSRFSGSGSGTEYTFTISSLQPEDIATYYCQQYDDLPYTFGQGT-KVEI--- 105 usage_00032.pdb 53 ETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYHNLPPFTFGPG-TKLEI-- 105 usage_00033.pdb 55 ETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYHNLPPFTFGPG-TKLEI-- 107 usage_00034.pdb 54 ETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYHNLPPFTFGPG-TKLEI-- 106 usage_00035.pdb 53 ETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYHNLPPFTFGPG-TKLEI-- 105 usage_00036.pdb 54 ADGVPSRFSGSGSGQDYSLTISSLESDDTATYYCLQHGESPYTFGGGT-KLEI--- 105 usage_00037.pdb 54 ESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQFNSYPLTFGGGT-KVEI--- 105 usage_00038.pdb 54 ESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQFNSYPLTFGGGT-KVEI--- 105 usage_00039.pdb 55 QTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNGYTFGAGTK-LEL---- 105 usage_00051.pdb 54 RPGVPSRFSSSGYGTDFVFTIENTLSEDVADYFCLQSDNLPLTFGSGT-KLEI--- 105 usage_00052.pdb 55 ESGVPSRFSGSGSGTEFTLTISTLRPEDFATYYCQQLHFYPHTFGGGT-RVDV--- 106 usage_00057.pdb 53 RPGVPSRFSSSGTGTDFVFTIENTLSEDVGDYYCLQSFNVPLTFGCGT-KLEI--- 104 usage_00060.pdb 55 ESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQFNSYPLTFGGGT-KVEI--- 106 usage_00065.pdb 54 ATGVPSRFSGSGSGTDFTFTISSLQPEDLATYYCQHYDDLPRITFGQGTRLEI-KR 108 usage_00067.pdb 54 ETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDTLPLTFGGGT-KVDI--- 105 usage_00098.pdb 54 RPGVPSRFSSSGYGTDFVFTIENMLSEDVADYYCLQSDTLPLTFGSGT-KLEI--- 105 usage_00099.pdb 54 VSGTPSRFSGSGSGRDYTFSISSVESEDIASYYCLQYDTLYTFGAGTK-LEL---- 104 usage_00100.pdb 55 ESGVPSRFSGSGSGTEFTLTISTLRPEDFATYYCQQLHFYPHTFGGGT-RVDV--- 106 usage_00102.pdb 54 ETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQY----EFIGPGT-KVDI--- 101 usage_00104.pdb 53 VDGVPSRFSGSGSGQDYSLTISSLEYEDMGIYYCLQYDEFPLTFGAGT-KLEL--- 104 usage_00109.pdb 54 ETGVPSRFSGSGSGTEFTFTISSLQPEDLATYYCQQYDNLPYTFGQGT-KLEI--- 105 usage_00120.pdb 54 ETGVPDRFSGSGSRKDYTLIITSLQTEDVATYYCQQYWSTPLTFGAGT-KLEL--- 105 usage_00122.pdb 54 ESGVPSRFSGSGSGTEFTLTISTLRPEDFATYYCQQLHFYPHTFGGGT-RVDV--- 105 usage_00123.pdb 53 ADGVPSRFSGSGSGTQYSLKINSLQPEDFGTYYCQHFWSSIYTFGGGT-KLEI--- 104 usage_00125.pdb 55 ADGVPSRFSGSGSGTQYSLKINSLQPEDFGTYYCQHFWSSIYTFGGGT-KLEI--- 106 usage_00127.pdb 55 ADGVPSRFSGSGSGTQFSLKINSLQSEDFGTYYCQHFWGTPFTFGSGT-KLEI--- 106 usage_00128.pdb 52 ASGVPSRFSGSGSGTFYSLTISSVEAEDAADYYCHQWSTFPSTFGSGT-KLEI--- 103 usage_00129.pdb 52 ASGVPSRFSGSGSGTFYSLTISSVEAEDAADYYCHQWSTFPSTFGSGT-KLEI--- 103 usage_00130.pdb 54 RPGVPSRFSGSGSGTDFTLTISSLQPEDVATYYCLQSDSLPYTFGQGT-KVEI--- 105 usage_00131.pdb 54 RPGVPSRFSGSGSGTDFTLTISSLQPEDVATYYCLQSDSLPYTFGQGT-KVEI--- 105 usage_00132.pdb 55 ETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYHNLPPYTFGPG-TKLEI-- 107 usage_00138.pdb 55 ESGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQQYNTYSWWTFGQG-TKVDI-- 107 usage_00160.pdb 55 ETGVPSRFSGSGSGTDFTFTISSLQPEDIATYFCQHFDHLPLAFGGGT-KVEI--- 106 usage_00161.pdb 55 ETGVPSRFSGSGSGTDFTFTISSLQPEDIATYFCQHFDHLPLAFGGGT-KVEI--- 106 usage_00162.pdb 55 ETGVPSRFSGSGSGTDFTFTISSLQPEDIATYFCQHFDHLPLAFGGGT-KVEI--- 106 usage_00167.pdb 54 KTGVPSRFRGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPITFGQGT-RLEI--- 105 usage_00168.pdb 55 KTGVPSRFRGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPITFGQGT-RLEI--- 106 usage_00169.pdb 55 KTGVPSRFRGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPITFGQGT-RLEI--- 106 usage_00170.pdb 58 FSGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCFQGSHVPFTFGQGT-KLQI--- 109 usage_00171.pdb 53 HSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYSTVPWTFGQGT-KVEI--- 104 usage_00172.pdb 54 HSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYSTVPWTFGQGT-KVEI--- 105 usage_00175.pdb 54 HSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYSTVPWTFGQGT-KVEI--- 105 usage_00176.pdb 53 QRGVPSRFSGSGFHTTFTLTISSLQPDDVATYFCAVF----QWFGPGT-KVDI--- 100 usage_00177.pdb 54 ETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYHNLPYTFGPGT-KLEI--- 105 usage_00178.pdb 56 ETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYHNLPYTFGPGT-KLEI--- 107 usage_00179.pdb 55 ESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQFNSYLITFGQGT-RLEI--- 106 usage_00181.pdb 54 VDGVPSRFSGSGSGADYSLTISSLDSEDFADYYCVQYAQLPYTFGGGT-KLEI--- 105 usage_00185.pdb 55 HTGVPSRFSGSGSGTDFTLIISSLQPEDIATYYCLQGQSYPRTFGGGT-KLEI--- 106 usage_00205.pdb 54 ASGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQQWSSHIFTFGQGT-KVEI--- 105 usage_00207.pdb 50 ETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQY----EFIGPGT-KVDI--- 97 usage_00208.pdb 55 ETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQY----EFIGPGT-KVDI--- 102 usage_00209.pdb 54 YTGVPDRFTGSGYGTDFTFTISTVQAEDLAVYFCQQDYSSPYTFGGGT-KLEI--- 105 usage_00211.pdb 54 RPGVPSRFSGSGSGTDFTLTISSLQPEDVATYYCLQSDSLPYTFGQGT-KVEI--- 105 G P RF I D Y C #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################