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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Wed Jan 20 23:14:44 2021
# Report_file: c_0293_29.html
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#====================================
# Aligned_structures: 5
#   1: usage_00072.pdb
#   2: usage_00082.pdb
#   3: usage_00173.pdb
#   4: usage_00242.pdb
#   5: usage_00298.pdb
#
# Length:        136
# Identity:       92/136 ( 67.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     93/136 ( 68.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           17/136 ( 12.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00072.pdb         1  -----------NRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD   49
usage_00082.pdb         1  AEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD   60
usage_00173.pdb         1  -----------NRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD   49
usage_00242.pdb         1  ------------QASTVAVKMLKDNASDKDLADLVSEMEVMKLIGRHKNIINLLGVCTQE   48
usage_00298.pdb         1  ------------QASTVAVKMLKDNASDKDLADLVSEMEVMKLIGRHKNIINLLGVCTQE   48
                                           VAVKMLK  A  KDL DL SEME MK IG HKNIINLLG CTQ 

usage_00072.pdb        50  GPLYVIVEYASKGNLREYLQARRPP--EQLSSKDLVSCAYQVARGMEYLASKKCIHRDLA  107
usage_00082.pdb        61  GPLYVIVEYASKGNLREYLQARR-----QLSSKDLVSCAYQVARGMEYLASKKCIHRDLA  115
usage_00173.pdb        50  GPLYVIVEYASKGNLREYLQARRPPPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLA  109
usage_00242.pdb        49  GPLYVILECAAKGNLREFLRARRP--G-PLSFPVLVSCAYQVARGMQYLESRKCIHRDLA  105
usage_00298.pdb        49  GPLYVIVECAAKGNLREFLRARRP----PLSFPVLVSCAYQVARGMQYLESRKCIHRDLA  104
                           GPLYVIvE A KGNLRE L ARR      LS   LVSCAYQVARGM YL S KCIHRDLA

usage_00072.pdb       108  ARNVLVTEDNVMKIAD  123
usage_00082.pdb       116  ARNVLVTEDNVMKIAD  131
usage_00173.pdb       110  ARNVLVTEDNVMKIAD  125
usage_00242.pdb       106  ARNVLVTEDNVMKIAD  121
usage_00298.pdb       105  ARNVLVTEDNVMKIAD  120
                           ARNVLVTEDNVMKIAD


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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