################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:13:29 2021 # Report_file: c_1484_72.html ################################################################################################ #==================================== # Aligned_structures: 13 # 1: usage_01011.pdb # 2: usage_03913.pdb # 3: usage_03915.pdb # 4: usage_03916.pdb # 5: usage_03918.pdb # 6: usage_03919.pdb # 7: usage_03920.pdb # 8: usage_03921.pdb # 9: usage_03923.pdb # 10: usage_03925.pdb # 11: usage_03927.pdb # 12: usage_03928.pdb # 13: usage_03930.pdb # # Length: 83 # Identity: 13/ 83 ( 15.7%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 60/ 83 ( 72.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 23/ 83 ( 27.7%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_01011.pdb 1 --SSSRTEIEGTQKLLNKDLAELINKMRLAQQNA-----VTSLSE--ECKRQML-TASHT 50 usage_03913.pdb 1 --QALYEKLEQTRTILSVKLAELINIT-------TIAD-FAQENSELAVATTSVVNNQTQ 50 usage_03915.pdb 1 SNQALYEKLEQTRTILSVKLAELINIT-------TIAD--AQENSELAVATTSVVNNQTQ 51 usage_03916.pdb 1 --QALYEKLEQTRTILSVKLAELINIT-------TIAD--AQENSELAVATTSVVNNQTQ 49 usage_03918.pdb 1 SNQALYEKLEQTRTILSVKLAELINIT-------TIAD--AQENSELAVATTSVVNNQTQ 51 usage_03919.pdb 1 -NQALYEKLEQTRTILSVKLAELINIT-------TIAD--AQENSELAVATTSVVNNQTQ 50 usage_03920.pdb 1 -NQALYEKLEQTRTILSVKLAELINIT-------TIAD--AQENSELAVATTSVVNNQTQ 50 usage_03921.pdb 1 SNQALYEKLEQTRTILSVKLAELINIT-------TIAD--AQENSELAVATTSVVNNQTQ 51 usage_03923.pdb 1 SNQALYEKLEQTRTILSVKLAELINIT-------TIAD--AQENSELAVATTSVVNNQTQ 51 usage_03925.pdb 1 --QALYEKLEQTRTILSVKLAELINIT-------TIAD--AQENSELAVATTSVVNNQTQ 49 usage_03927.pdb 1 --QALYEKLEQTRTILSVKLAELINIT-------TIAD--AQENSELAVATTSVVNNQTQ 49 usage_03928.pdb 1 -NQALYEKLEQTRTILSVKLAELINIT-------TIADSFAQENSELAVATTSVVNNQTQ 52 usage_03930.pdb 1 SNQALYEKLEQTRTILSVKLAELINIT-------TIAD-FAQENSELAVATTSVVNNQTQ 52 qalyeklEqTrtiLsvkLAELINit aqens avattsv nnqtq usage_01011.pdb 51 LAVDAKNLLDAVDQAKVLAN--- 70 usage_03913.pdb 51 LIKNVQDLLILTRSIKEKWLL-- 71 usage_03915.pdb 52 LIKNVQDLLILTRSIKEKWLL-- 72 usage_03916.pdb 50 LIKNVQDLLILTRSIKEKWLLNQ 72 usage_03918.pdb 52 LIKNVQDLLILTRSIKEKWLL-- 72 usage_03919.pdb 51 LIKNVQDLLILTRSIKEKWLLNQ 73 usage_03920.pdb 51 LIKNVQDLLILTRSIKEKWLLNQ 73 usage_03921.pdb 52 LIKNVQDLLILTRSIKEKWLL-- 72 usage_03923.pdb 52 LIKNVQDLLILTRSIKEKWLLNQ 74 usage_03925.pdb 50 LIKNVQDLLILTRSIKEK----- 67 usage_03927.pdb 50 LIKNVQDLLILTRSIKEKWLLN- 71 usage_03928.pdb 53 LIKNVQDLLILTRSIKEKWL--- 72 usage_03930.pdb 53 LIKNVQDLLILTRSIKEKWLLNQ 75 LiknvqdLLiltrsiKek #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################