################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:01:11 2021 # Report_file: c_0673_252.html ################################################################################################ #==================================== # Aligned_structures: 5 # 1: usage_00340.pdb # 2: usage_00620.pdb # 3: usage_00621.pdb # 4: usage_00794.pdb # 5: usage_01596.pdb # # Length: 84 # Identity: 5/ 84 ( 6.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 22/ 84 ( 26.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 41/ 84 ( 48.8%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00340.pdb 1 -------------GIIVFQSDKLDLEPSPNLGPT--GIDNTNVNLINAKGDVLLHIGIRR 45 usage_00620.pdb 1 --------------TVVVKGEV-----NA-----NAKS-FNVDLLAGKSKDIALHLNPRL 35 usage_00621.pdb 1 ------------GRTVVVKGEV-----NA-----NAKS-FNVDLLAGKSKDIALHLNPRL 37 usage_00794.pdb 1 PFITTILGGLYPSKSILLSGTV-----LP-----SAQS-FHINLCS--GNHIAFHLNPRF 47 usage_01596.pdb 1 ------------GRTVVVKGEV-----NA-----NAKS-FNVDLLAGKSKDIALHLNPRL 37 v g v s f ll dialHlnpR usage_00340.pdb 46 RENAFVFNSIPYGESRGPEERI-P 68 usage_00620.pdb 36 NIKAFVRNSFLQESWGEEERNIT- 58 usage_00621.pdb 38 NIKAFVRNSFLQESWGEEERNIT- 60 usage_00794.pdb 48 DENAVVRNTQID------------ 59 usage_01596.pdb 38 NIKAFVRNSFLQESWGEEERNIT- 60 AfVrNs #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################