################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:39:08 2021 # Report_file: c_1104_14.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00079.pdb # 2: usage_00111.pdb # 3: usage_00309.pdb # 4: usage_00310.pdb # 5: usage_00660.pdb # 6: usage_00719.pdb # 7: usage_00720.pdb # 8: usage_00721.pdb # 9: usage_00832.pdb # 10: usage_00833.pdb # 11: usage_00906.pdb # # Length: 127 # Identity: 21/127 ( 16.5%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 30/127 ( 23.6%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 42/127 ( 33.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00079.pdb 1 -------GNTLRELRLFLRDVTKRLATDKR-FNIFSKPVSD-----YLEVIKEPMDLSTV 47 usage_00111.pdb 1 -----------SGFLILLRKTLEQLQEKD-TGNIFSEPVPLSEVPDYLDHIKKPMDFFTM 48 usage_00309.pdb 1 SMEQVAMELRLTELTRLLRSVLDQLQDKD-PARIFAQPVSLKEVPDYLDHIKHPMDFATM 59 usage_00310.pdb 1 -MEQVAMELRLTELTRLLRSVLDQLQDKD-PARIFAQPVSLKEVPDYLDHIKHPMDFATM 58 usage_00660.pdb 1 ---SMQEEDTFRELRIFLRNVTHRLAIDKR-FRVFTKPVDPDEVPDYVTVIKQPMDLSSV 56 usage_00719.pdb 1 ------------PLTVLLRSVLDQLQDKD-PARIFAQPVSLKEVPDYLDHIKHPMDFATM 47 usage_00720.pdb 1 -----------TPLTVLLRSVLDQLQDKD-PARIFAQPVSLKEVPDYLDHIKHPMDFATM 48 usage_00721.pdb 1 ------------PLTVLLRSVLDQLQDKD-PARIFAQPVSLKEVPDYLDHIKHPMDFATM 47 usage_00832.pdb 1 -MEQVAMELRLTELTRLLRSVLDQLQDKD-PARIFAQPVSLKEVPDYLDHIKHPMDFATM 58 usage_00833.pdb 1 -MEQVAMELRLTELTRLLRSVLDQLQDKD-PARIFAQPVSLKEVPDYLDHIKHPMDFATM 58 usage_00906.pdb 1 ------------PLTVLLRSVLDQLQDKD-PARIFAQPVSLKEVPDYLDHIKHPMDFATM 47 l LR v L iF PV Yl IK PMD t usage_00079.pdb 48 ITKIDKHNYLTAKDFLKDIDLICSNALEYNPDKDPGDKIIRHRACTLKDTAHAIIAAEL- 106 usage_00111.pdb 49 KQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKD----TIFYRAAVRLREQGGAVLRQARR 104 usage_00309.pdb 60 RKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARD----TVFYRAAVRLRD----------- 104 usage_00310.pdb 59 RKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARD----TVFYRAAVRLRDQGGVVLRQARR 114 usage_00660.pdb 57 ISKIDLHKYLTVKDYLRDIDLICSNALEYNPDRDPGDRLIRHRA-ALRDTAYAIIKE--- 112 usage_00719.pdb 48 RKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARD----TVFYRAAVRLRDQ---------- 93 usage_00720.pdb 49 RKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARD----TVFYRAAVRLRDQ---------- 94 usage_00721.pdb 48 RKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARD----TVFYRAAVRLRDQGGVVLRQARR 103 usage_00832.pdb 59 RKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARD----TVFYRAAVRLRDQGGVVLRQARR 114 usage_00833.pdb 59 RKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARD----TVFYRAAVRLRDQGGVVLRQARR 114 usage_00906.pdb 48 RKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARD----TVFYRAAVRLRDQGGVVLRQARR 103 Y f D dLI N YN A Lrd usage_00079.pdb ------- usage_00111.pdb 105 QAEKMGS 111 usage_00309.pdb ------- usage_00310.pdb 115 EVDS--- 118 usage_00660.pdb ------- usage_00719.pdb ------- usage_00720.pdb ------- usage_00721.pdb 104 EVDSI-- 108 usage_00832.pdb 115 EVDSIG- 120 usage_00833.pdb 115 EVDS--- 118 usage_00906.pdb 104 EVD---- 106 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################