################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:12:20 2021 # Report_file: c_1208_148.html ################################################################################################ #==================================== # Aligned_structures: 12 # 1: usage_00195.pdb # 2: usage_00196.pdb # 3: usage_00250.pdb # 4: usage_00518.pdb # 5: usage_00519.pdb # 6: usage_00520.pdb # 7: usage_01271.pdb # 8: usage_01494.pdb # 9: usage_01758.pdb # 10: usage_02035.pdb # 11: usage_02132.pdb # 12: usage_02180.pdb # # Length: 45 # Identity: 33/ 45 ( 73.3%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 33/ 45 ( 73.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 12/ 45 ( 26.7%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00195.pdb 1 -----GYYQMKKVVKTVAVKILK-----PALKDELLAEANVMQQL 35 usage_00196.pdb 1 -----GYYQMKKVVKTVAVKIL------PALKDELLAEANVMQQL 34 usage_00250.pdb 1 -TVKKGYYQMKKVVKTVAVKIL------PALKDELLAEANVMQQL 38 usage_00518.pdb 1 -TVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQL 44 usage_00519.pdb 1 -TVKKGYYQMKKVVKTVAVKILKN---DPALKDELLAEANVMQQL 41 usage_00520.pdb 1 -----GYYQMKKVVKTVAVKIL-------ALKDELLAEANVMQQL 33 usage_01271.pdb 1 -TVKKGYYQMKKVVKTVAVKIL------PALKDELLAEANVMQQL 38 usage_01494.pdb 1 -TVKKGYYQMKKVVKTVAVKILK-----PALKDELLAEANVMQQL 39 usage_01758.pdb 1 -TVKKGYYQMKKVVKTVAVKILK-----PALKDELLAEANVMQQL 39 usage_02035.pdb 1 -TVKKGYYQMKKVVKTVAVKILK-----PALKDELLAEANVMQQL 39 usage_02132.pdb 1 GTVKKGYYQMKKVVKTVAVKILK-----PALKDELLAEANVMQQL 40 usage_02180.pdb 1 -TVKKGYYQMKKVVKTVAVKILK-----PALKDELLAEANVMQQL 39 GYYQMKKVVKTVAVKIL ALKDELLAEANVMQQL #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################