################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:33:12 2021 # Report_file: c_1371_210.html ################################################################################################ #==================================== # Aligned_structures: 6 # 1: usage_00881.pdb # 2: usage_00882.pdb # 3: usage_00980.pdb # 4: usage_01101.pdb # 5: usage_01102.pdb # 6: usage_01680.pdb # # Length: 81 # Identity: 8/ 81 ( 9.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 17/ 81 ( 21.0%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 25/ 81 ( 30.9%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00881.pdb 1 -VDTVEICGALKNVVAVGAGFCDGLG----F-GDNTKAAVIRLGLEIAFAKLFC-S---G 50 usage_00882.pdb 1 --DTVEICGALKNVVAVGAGFCDGLG----F-GDNTKAAVIRLGL--MEMIAFAKLFCSG 51 usage_00980.pdb 1 -----------KNILAIATGISDGLK----L-GSNARAALITRGL--TEMGRLVSV---F 39 usage_01101.pdb 1 DVVGVEIAGALKNVIAIAAGILDGFG----G-WDNAKAALETRGI--YEIARFG-F---F 49 usage_01102.pdb 1 DVVGVEIAGALKNVIAIAAGILDGFG----G-WDNAKAALETRGI--YEIARFG-F---F 49 usage_01680.pdb 1 DIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAI--NEMAELIEI---L 55 KNv a g dG N kaa g e usage_00881.pdb 51 PVSSATFLESCGVADLITTCY 71 usage_00882.pdb 52 PVSSATFLESCGVADLITTCY 72 usage_00980.pdb 40 GGKQETLTGLAGLGDLVLTC- 59 usage_01101.pdb 50 GADQKTF-GLAGIGDLVTCNS 69 usage_01102.pdb 50 GADQKTF-GLAGIGDLVTCNS 69 usage_01680.pdb 56 GGDRETAFGLSGFGDLIAT-- 74 T G DL #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################