################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:19:43 2021 # Report_file: c_1148_279.html ################################################################################################ #==================================== # Aligned_structures: 5 # 1: usage_00525.pdb # 2: usage_02643.pdb # 3: usage_03897.pdb # 4: usage_03898.pdb # 5: usage_03899.pdb # # Length: 64 # Identity: 29/ 64 ( 45.3%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 40/ 64 ( 62.5%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 14/ 64 ( 21.9%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00525.pdb 1 -RIHVEMKFSVRDCSSIPSV-PG--SCKETFNLYYYEADFDSATKTFPN-WMENPWVKVD 55 usage_02643.pdb 1 QRVYIEIKFTLRDCNSL--P-GVMGTCKETFNLYYYESDNDKER-----FIRENQFVKID 52 usage_03897.pdb 1 --IFVELKFTLRDCNSL--PGVG--TCKETFNLYYYETDYDTGR-----NIRENLYVKID 49 usage_03898.pdb 1 --IFVELKFTLRDCNSL--P-G---TCKETFNLYYYETDYDTGR-----NIRENLYVKID 47 usage_03899.pdb 1 --IFVELKFTLRDCNSL--V-LG--TCKETFNLYYYETDYDTGR-----NIRENLYVKID 48 i vE KFtlRDCnSl tCKETFNLYYYE D D r irEN VKiD usage_00525.pdb 56 TIAA 59 usage_02643.pdb 53 TIAA 56 usage_03897.pdb 50 TIAA 53 usage_03898.pdb 48 TIAA 51 usage_03899.pdb 49 TIAA 52 TIAA #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################