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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Wed Jan 20 23:56:53 2021
# Report_file: c_0824_41.html
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#====================================
# Aligned_structures: 8
#   1: usage_00009.pdb
#   2: usage_00348.pdb
#   3: usage_00349.pdb
#   4: usage_00350.pdb
#   5: usage_00351.pdb
#   6: usage_00352.pdb
#   7: usage_00361.pdb
#   8: usage_00362.pdb
#
# Length:         72
# Identity:       40/ 72 ( 55.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     40/ 72 ( 55.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           14/ 72 ( 19.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00009.pdb         1  --EIESEIDAMPGVVESAVIGVPHADFGEGVTAFVVLR-EFAP---SEAQVL-HGLDGQL   53
usage_00348.pdb         1  PKEIESEIDA-PGVVESAVIGVPHADFGEGVTAVVVRDKGATI---DEAQVL-HGLDGQL   55
usage_00349.pdb         1  PKEIESEIDA-PGVVESAVIGVPHADFGEGVTAVVVRDKGATI---DEAQVL-HGLDGQL   55
usage_00350.pdb         1  PKEIESEIDA-PGVVESAVIGVPHADFGEGVTAVVVRDKGATI---DEAQVL-HGLDGQL   55
usage_00351.pdb         1  PKEIESEIDA-PGVVESAVIGVPHADFGEGVTAVVVRDKGATI---DEAQVL-HGLDGQL   55
usage_00352.pdb         1  --EIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRD-GATI---DEAQVL-HGLDGQL   53
usage_00361.pdb         1  --EIESEIDAMPGVVESAVIGVPHADFGEGVTAFVVLR-EFAPSEILAEELAF---VDRL   54
usage_00362.pdb         1  --EIESEIDAMPGVVESAVIGVPHADFGEGVTAFVVLR-EFAPSEILAEELAF---VDRL   54
                             EIESEIDA PGVVESAVIGVPHADFGEGVTA VV                       L

usage_00009.pdb        54  A-F--MPVIFVD   62
usage_00348.pdb        56  AKFKPKKVIFVD   67
usage_00349.pdb        56  AKFKPKKVIFVD   67
usage_00350.pdb        56  AKFKPKKVIFVD   67
usage_00351.pdb        56  AKFKPKKVIFVD   67
usage_00352.pdb        54  A-F--MPVIFVD   62
usage_00361.pdb        55  A-F--MPVIFVD   63
usage_00362.pdb        55  A-F--MPVIFVD   63
                           A F    VIFVD


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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