################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:02:41 2021 # Report_file: c_1378_1.html ################################################################################################ #==================================== # Aligned_structures: 4 # 1: usage_00040.pdb # 2: usage_00041.pdb # 3: usage_00459.pdb # 4: usage_00982.pdb # # Length: 249 # Identity: 7/249 ( 2.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 10/249 ( 4.0%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 183/249 ( 73.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00040.pdb 1 LKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDD 60 usage_00041.pdb 1 LKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDD 60 usage_00459.pdb 1 ---------------------------------------------------LLDNWDSVT 9 usage_00982.pdb 1 -------------------------------------------------KLLDNWDSVTS 11 usage_00040.pdb 61 FQKKWQEEMEL--YRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRT 118 usage_00041.pdb 61 FQKKWQEEMEL--YRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRT 118 usage_00459.pdb 10 STFSKLREQLGPV-TQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEME 68 usage_00982.pdb 12 TFSKLREQLG-PV-TQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEME 69 k ee Q EG RQ E D usage_00040.pdb 119 H----------------------------------------------------------- 119 usage_00041.pdb 119 H----------------------------------------------------------- 119 usage_00459.pdb 69 LYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQR 128 usage_00982.pdb 70 LYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQR 129 usage_00040.pdb ------------------------------------------------------------ usage_00041.pdb ------------------------------------------------------------ usage_00459.pdb 129 LAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQGL--------------- 173 usage_00982.pdb 130 LAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFLSAL 189 usage_00040.pdb 120 --------L 120 usage_00041.pdb 120 --------L 120 usage_00459.pdb --------- usage_00982.pdb 190 EEYTKKLN- 197 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################