################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:16:39 2021 # Report_file: c_0329_2.html ################################################################################################ #==================================== # Aligned_structures: 17 # 1: usage_00002.pdb # 2: usage_00003.pdb # 3: usage_00005.pdb # 4: usage_00006.pdb # 5: usage_00007.pdb # 6: usage_00008.pdb # 7: usage_00023.pdb # 8: usage_00024.pdb # 9: usage_00027.pdb # 10: usage_00028.pdb # 11: usage_00029.pdb # 12: usage_00030.pdb # 13: usage_00031.pdb # 14: usage_00032.pdb # 15: usage_00033.pdb # 16: usage_00034.pdb # 17: usage_00036.pdb # # Length: 203 # Identity: 161/203 ( 79.3%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 161/203 ( 79.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 31/203 ( 15.3%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00002.pdb 1 ------------------KLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDP 42 usage_00003.pdb 1 HRTKYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDA 60 usage_00005.pdb 1 ------------------KLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDA 42 usage_00006.pdb 1 -----WEFVYEDAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDP 55 usage_00007.pdb 1 -----WEFVYEDAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDP 55 usage_00008.pdb 1 -----WEFVYEDAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDP 55 usage_00023.pdb 1 -----WEMVYESAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDA 55 usage_00024.pdb 1 ------------------KLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDA 42 usage_00027.pdb 1 ------------------KLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDA 42 usage_00028.pdb 1 -----WEFVYEDAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDP 55 usage_00029.pdb 1 ------------------KLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDP 42 usage_00030.pdb 1 ------------------KLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDA 42 usage_00031.pdb 1 -----WEFVYEDAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDP 55 usage_00032.pdb 1 NRTKYWEFVYEDAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDP 60 usage_00033.pdb 1 ------------------KLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDA 42 usage_00034.pdb 1 HRTKYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDA 60 usage_00036.pdb 1 -------------------LPCVAAKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDA 41 LPCVAAKIYRNLYR GSSIGAIDSKLDWSHNFTNMLGYTD usage_00002.pdb 43 QFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVL 102 usage_00003.pdb 61 QFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVL 120 usage_00005.pdb 43 QFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVL 102 usage_00006.pdb 56 QFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVL 115 usage_00007.pdb 56 QFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVL 115 usage_00008.pdb 56 QFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVL 115 usage_00023.pdb 56 QFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVL 115 usage_00024.pdb 43 QFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVL 102 usage_00027.pdb 43 QFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVL 102 usage_00028.pdb 56 QFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVL 115 usage_00029.pdb 43 QFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVL 102 usage_00030.pdb 43 QFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVL 102 usage_00031.pdb 56 QFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVL 115 usage_00032.pdb 61 QFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVL 120 usage_00033.pdb 43 QFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVL 102 usage_00034.pdb 61 QFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVL 120 usage_00036.pdb 42 QFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVL 101 QFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVL usage_00002.pdb 103 LWLSQLQKDLGADASDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLP 162 usage_00003.pdb 121 VWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLP 180 usage_00005.pdb 103 GWLAQLQKA---AGADASLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLP 159 usage_00006.pdb 116 LWLSQLQKDLGADASDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLP 175 usage_00007.pdb 116 LWLSQLQKDLGADASDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLP 175 usage_00008.pdb 116 LWLSQLQKDLGADASDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLP 175 usage_00023.pdb 116 GWLAQLQKA---AGADASLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLP 172 usage_00024.pdb 103 GWLAQLQKA---AGADASLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLP 159 usage_00027.pdb 103 GWLAQLQKA---AGADASLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLP 159 usage_00028.pdb 116 LWLSQLQKDLGADASDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLP 175 usage_00029.pdb 103 LWLSQLQKDLGADASDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLP 162 usage_00030.pdb 103 GWLAQLQKA---AGADASLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLP 159 usage_00031.pdb 116 LWLSQLQKDLGADASDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLP 175 usage_00032.pdb 121 LWLSQLQKDLGADASDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLP 180 usage_00033.pdb 103 VWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLP 162 usage_00034.pdb 121 VWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLP 180 usage_00036.pdb 102 VWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLP 161 WL QLQK D LRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLP usage_00002.pdb 163 SDPMFKLVAQLYKIVPNVLLEQG 185 usage_00003.pdb 181 HDPMFKLVAQLYKI--------- 194 usage_00005.pdb 160 GDPMFKLVAQLYKIVPNVLLEQG 182 usage_00006.pdb 176 SDPMFKLVAQLYKIVPNVLLEQG 198 usage_00007.pdb 176 SDPMFKLVAQLYKIVPNVLLEQG 198 usage_00008.pdb 176 SDPMFKLVAQLYKIVPNVLLEQG 198 usage_00023.pdb 173 GDPMFKLVAQLYKIVPNV----- 190 usage_00024.pdb 160 GDPMFKLVAQLYKIVPNVLLEQG 182 usage_00027.pdb 160 GDPMFKLVAQLYKIVPNVLLEQG 182 usage_00028.pdb 176 SDPMFKLVAQLYKIVPNVLLEQG 198 usage_00029.pdb 163 SDPMFKLVAQLYKI--------- 176 usage_00030.pdb 160 GDPMFKLVAQLYKIVPNVLLEQG 182 usage_00031.pdb 176 SDPMFKLVAQLYKIVPNVLLEQG 198 usage_00032.pdb 181 SDPMFKLVAQLYKIVPNVLLEQG 203 usage_00033.pdb 163 HDPMFKLVAQLYKI--------- 176 usage_00034.pdb 181 HDPMFKLVAQLYKIVPNVLLEQG 203 usage_00036.pdb 162 HDPMFKLVAQLYKIVPNVLLE-- 182 DPMFKLVAQLYKI #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # 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