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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Wed Jan 20 23:24:43 2021
# Report_file: c_1380_2.html
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#====================================
# Aligned_structures: 6
#   1: usage_00004.pdb
#   2: usage_00588.pdb
#   3: usage_01889.pdb
#   4: usage_01890.pdb
#   5: usage_01892.pdb
#   6: usage_01893.pdb
#
# Length:         88
# Identity:       76/ 88 ( 86.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     76/ 88 ( 86.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           12/ 88 ( 13.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00004.pdb         1  TLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFE   60
usage_00588.pdb         1  ---------TPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFE   51
usage_01889.pdb         1  ---------TPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFE   51
usage_01890.pdb         1  ---------TPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFE   51
usage_01892.pdb         1  ---------TPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFE   51
usage_01893.pdb         1  ---------TPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFE   51
                                    TPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFE

usage_00004.pdb        61  GGGGQDFGLAAAIATLIFLLVGALAI--   86
usage_00588.pdb        52  GGGGQDFGLAAAIATLIFLLVGALAIVN   79
usage_01889.pdb        52  GGGGQDFGLAAAIATLIFLLVGALA---   76
usage_01890.pdb        52  GGGGQDFGLAAAIATLIFLLVGALA---   76
usage_01892.pdb        52  GGGGQDFGLAAAIATLIFLLVGALA---   76
usage_01893.pdb        52  GGGGQDFGLAAAIATLIFLLVGALA---   76
                           GGGGQDFGLAAAIATLIFLLVGALA   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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