################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:34:41 2021 # Report_file: c_0117_11.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00026.pdb # 2: usage_00039.pdb # 3: usage_00042.pdb # 4: usage_00043.pdb # 5: usage_00047.pdb # 6: usage_00052.pdb # 7: usage_00062.pdb # 8: usage_00068.pdb # 9: usage_00079.pdb # 10: usage_00080.pdb # 11: usage_00110.pdb # # Length: 151 # Identity: 23/151 ( 15.2%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 41/151 ( 27.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 43/151 ( 28.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00026.pdb 1 -VQLQESGPALVKPSQSLSLTCTVTGYSI-TSDYAWNWIRQFPGNKLEWMGYISY--S-A 55 usage_00039.pdb 1 -VQLVESGGGLVQPGGSLRLSCAASGFTF-RN-SAMHWVRQAPGKGLEWVSSIWYS-G-S 55 usage_00042.pdb 1 -RVQLQSGPGLVKPSQSLSLTCTVTGYSI-TSDFAWNWIRQFPGNKLEWMGYINY--S-G 55 usage_00043.pdb 1 EVQLVESGGGLVQPGGSLRLSCATSGYTF-TE-YTMHWMRQAPGKGLEWVAGINPK-N-G 56 usage_00047.pdb 1 -VQLVESGGGLVQPGGSRKLSCAASGFTF-SS-FGMHWVRQAPEKGLEWVAYISSG-S-S 55 usage_00052.pdb 1 EVQLQESGPSLVKPSQTLSLTCSVTGDSV-TS-GYWSWIRQFPGNKLDYMGYISY--R-G 55 usage_00062.pdb 1 -VQLQESGGGLVQAGGSLRLSCAAAGRNL-RM-YRMGWFRQAPGKEREFVGTMVWS-S-D 55 usage_00068.pdb 1 --KLVESGGGLVQPGGSLRLSCGTSGFTLTD--DYMTWVRQPPGKALEWLGFIRDRANGY 56 usage_00079.pdb 1 -VQVVESGGGVVQPGRSLRLSCTASGFTF-SN-FAMGWVRQAPGKGLEWVAFISSD-G-S 55 usage_00080.pdb 1 -AILVESGGGVVQPGRSLRLSCAASQFTF-SG-HGLHWVRQAPGKGLEWVASISFA-G-T 55 usage_00110.pdb 1 -EQLVESGGGVVQPGGSLRLSCLASGFTF-HK-YGMHWVRQAPGKGLEWVALISDD-G-M 55 eSG V p sl L C g W RQ Pg le i usage_00026.pdb 56 NTRYNPSLKSRISITRDTSKNQFFLQLNSVTVEDTATYYCATAG---------------- 99 usage_00039.pdb 56 NTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARFAGGWG------------ 103 usage_00042.pdb 56 FTSHNPSLKSRISITRDTSKNQFFLQLNSVTTEDTATYYCAGLLW--------------- 100 usage_00043.pdb 57 GTSHNQRFMDRFTISVDKSTSTAYMQMNSLRAEDTAVYYCARW-R--------------- 100 usage_00047.pdb 56 TLHYADTVKGRFTISRDNPKNTLFLQMTSLRSEDTAMYYCARWGNY-------------- 101 usage_00052.pdb 56 STYYNPSLKSRISITRDTSKNQVYLQLKSVSSEDTATYYCSYFDS--------------- 100 usage_00062.pdb 56 TIYYADSVKGRFIISRDNAKNTVYLQMNSLKPEDTAVYYCAAGAGW-----A-GT----- 104 usage_00068.pdb 57 TTEYSASVKGRFTISRDNSQSIVYLQMNTLRVEDSATYYCARPKGY-------------- 102 usage_00079.pdb 56 NKNYGDSVKGRFTISRDNSKNTVFLQMNSLRVEDTALYYCAKDVGD-----Y-K---SPI 106 usage_00080.pdb 56 KMDYADSVKGRFAISRDNSKNTLYLQMNSLRVEDTALYYCAKDMRE--YEC--E-Y---- 106 usage_00110.pdb 56 RKYHSDSMWGRVTISRDNSKNTLYLQFSSLKVEDTAMFFCAREAGG-----PIW--HDDV 108 R I rD lQ s EDtA yyCa usage_00026.pdb 100 --------------RGF--PYWGQGTLVTVS 114 usage_00039.pdb 104 ---------------AY--DVWGQGTLVTVS 117 usage_00042.pdb 101 --------------YDGGAGSWGQGTLVTV- 116 usage_00043.pdb 101 --------------RYF--DVWGQGTLVTV- 114 usage_00047.pdb 102 ------------PHYAM--DYWGQGTSVTVS 118 usage_00052.pdb 101 --------------DDYAMEYWGQGTSVTV- 116 usage_00062.pdb 105 -------------MTDY--NYWGQGTQVTVS 120 usage_00068.pdb 103 ------------FPYAM--DYWGQGTSVIVS 119 usage_00079.pdb 107 QDP-------RAMVGAF--DLWGQGTMVTVS 128 usage_00080.pdb 107 ---WTPCIDRRGVVGIF--DMWGQGTMVTVS 132 usage_00110.pdb 109 KY-DFND--GYYNYHYM--DVWGKGTTVTVS 134 WGqGT VtV #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################