################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:34:48 2021 # Report_file: c_0120_6.html ################################################################################################ #==================================== # Aligned_structures: 7 # 1: usage_00001.pdb # 2: usage_00007.pdb # 3: usage_00008.pdb # 4: usage_00026.pdb # 5: usage_00028.pdb # 6: usage_00045.pdb # 7: usage_00058.pdb # # Length: 139 # Identity: 30/139 ( 21.6%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 65/139 ( 46.8%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 33/139 ( 23.7%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 EVQLVESGGGLVQAGGSLRLSCAASGRT--FSWSAVGWFRQAPGKEREFVAAIRWSGGSP 58 usage_00007.pdb 1 QVQLQESGGGLVQAGGSLRLSCAASGSI--FSINSMDWDRQAPGKQRELVATITS-GGST 57 usage_00008.pdb 1 --QLQESGGGLVQAGGSLRLSCTASRRT--GSNWCMGWFRQLAGKEPELVVALNFDYDMT 56 usage_00026.pdb 1 -VQLQESGGGLVQAGGSLRLSCAASGAT--GSTYDMGWFRQAPGKERESVAAINWGSAGT 57 usage_00028.pdb 1 RITLKESGPPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYS-DDDK 59 usage_00045.pdb 1 --QPQESGGGLAQAGGSLRLSCVVSGITF-A-SEAWGWYRRAPGKQRELIAAINN-EGRT 55 usage_00058.pdb 1 -VQLVESGGGSVQAGGSLRLSCAVSGST--YSPCTTGWVRQAPGKGLEWVSSISS-PGTI 56 ql ESGgglvqaggsLrLsC Sg gW Rq pGK E i usage_00001.pdb 59 YYADSVKDRFTISRDNAKNTVYLQMNSLRPEDTAVYLCGETSLFPTS-R--------GS- 108 usage_00007.pdb 58 NYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNANVK------T----WA-G-- 104 usage_00008.pdb 57 YYADSVKGRFTVSRDSGKNTVYLQMNSLKPEDTAIYYCAARSGGFSS-N--------RE- 106 usage_00026.pdb 58 YYASSVRGRFTISRDNAKKTVYLQMNSLKPEDTAVYTCGAG-R----IR--------ES- 103 usage_00028.pdb 60 RYSPSLNTRLTITKDTSKNQVVLVMTRVSPVDTATYFCAHRRG------PT-----GPVN 108 usage_00045.pdb 56 NYVDSVKGRFTVSRDNAKNVMYLQMNSLKPEDTAVYYCNANL-------QTGTLSG---- 104 usage_00058.pdb 57 YYQDSVKGRFTISRDNAKNTVYLQMNSLQREDTGMYYCQIQC------------------ 98 Y Sv RfT srD Kn vyLqMnsl peDTa Y C usage_00001.pdb 109 HY----DTWGQGTQVTVSS 123 usage_00007.pdb 105 ---MTRDYWGQGTQVTVSS 120 usage_00008.pdb 107 LY----DGWGQGTQVTVSS 121 usage_00026.pdb 104 WV----TWWGQGTQVTV-- 116 usage_00028.pdb 109 AM----DVWGQGITVTIS- 122 usage_00045.pdb 105 ---AR-LYWGQGTQVTVS- 118 usage_00058.pdb 99 --GSIREYWGQGTQVTV-- 113 WGQGtqVTv #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################