################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:11:30 2021 # Report_file: c_0004_3.html ################################################################################################ #==================================== # Aligned_structures: 12 # 1: usage_00179.pdb # 2: usage_00232.pdb # 3: usage_00233.pdb # 4: usage_00234.pdb # 5: usage_00292.pdb # 6: usage_00383.pdb # 7: usage_00384.pdb # 8: usage_00385.pdb # 9: usage_00386.pdb # 10: usage_00396.pdb # 11: usage_00397.pdb # 12: usage_00473.pdb # # Length: 258 # Identity: 89/258 ( 34.5%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 131/258 ( 50.8%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 12/258 ( 4.7%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00179.pdb 1 L-LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN 59 usage_00232.pdb 1 -LAE-TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN 58 usage_00233.pdb 1 -LAE-TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN 58 usage_00234.pdb 1 -LAE-TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN 58 usage_00292.pdb 1 L-LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN 59 usage_00383.pdb 1 L-LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN 59 usage_00384.pdb 1 L-LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN 59 usage_00385.pdb 1 L-LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN 59 usage_00386.pdb 1 L-LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN 59 usage_00396.pdb 1 L-LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN 59 usage_00397.pdb 1 L-LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN 59 usage_00473.pdb 1 L-CDLSVEGDSVTSVGWSERGNLVAVGTHKGFVQIWDAAAGKKLSMLEGHTARVGALAWN 59 y SV W G l VG V Dv q Lr m H ARVG LsWN usage_00179.pdb 60 SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ--EVCGLRWAPDGRHLASGGNDNLVNV 117 usage_00232.pdb 59 RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS--EVCGLAWRSDGLQLASGGNDNVVQI 116 usage_00233.pdb 59 RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS--EVCGLAWRSDGLQLASGGNDNVVQI 116 usage_00234.pdb 59 RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS--EVCGLAWRSDGLQLASGGNDNVVQI 116 usage_00292.pdb 60 SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ--EVCGLRWAPDGRHLASGGNDNLVNV 117 usage_00383.pdb 60 SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ--EVCGLRWAPDGRHLASGGNDNLVNV 117 usage_00384.pdb 60 SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ--EVCGLRWAPDGRHLASGGNDNLVNV 117 usage_00385.pdb 60 SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ--EVCGLRWAPDGRHLASGGNDNLVNV 117 usage_00386.pdb 60 SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ--EVCGLRWAPDGRHLASGGNDNLVNV 117 usage_00396.pdb 60 SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ--EVCGLRWAPDGRHLASGGNDNLVNV 117 usage_00397.pdb 60 SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ--EVCGLRWAPDGRHLASGGNDNLVNV 117 usage_00473.pdb 60 AEQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEV-CGLKWSTDHQLLASGGNDNKLLV 118 LSSGSRsg IhhhDvR a h tl ghs e CGL W Dg LASGGNDN v usage_00179.pdb 118 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 177 usage_00232.pdb 117 WDARS----SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNT 172 usage_00233.pdb 117 WDARS----SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNT 172 usage_00234.pdb 117 WDARS----SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNT 172 usage_00292.pdb 118 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 177 usage_00383.pdb 118 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 177 usage_00384.pdb 118 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 177 usage_00385.pdb 118 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 177 usage_00386.pdb 118 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 177 usage_00396.pdb 118 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 177 usage_00397.pdb 118 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 177 usage_00473.pdb 119 WNHSS----LSPVQQYTEHLAAVKAIAWSPHQHGLLASGGGTADRCIRFWNTLTGQPLQC 174 W P t T H AVKAvAWcPwQsn LAtGGGT D I WN Ga usage_00179.pdb 178 VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP--TMAKVAELKGHTSRVLSLTMSP 235 usage_00232.pdb 173 VDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP 232 usage_00233.pdb 173 VDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP 232 usage_00234.pdb 173 VDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP 232 usage_00292.pdb 178 VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP--TMAKVAELKGHTSRVLSLTMSP 235 usage_00383.pdb 178 VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP--TMAKVAELKGHTSRVLSLTMSP 235 usage_00384.pdb 178 VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP--TMAKVAELKGHTSRVLSLTMSP 235 usage_00385.pdb 178 VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP--TMAKVAELKGHTSRVLSLTMSP 235 usage_00386.pdb 178 VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP--TMAKVAELKGHTSRVLSLTMSP 235 usage_00396.pdb 178 VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP--TMAKVAELKGHTSRVLSLTMSP 235 usage_00397.pdb 178 VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP--TMAKVAELKGHTSRVLSLTMSP 235 usage_00473.pdb 175 IDTGSQVCNLAWSKHANELVSTHGYSQNQILVWKYP--SLTQVAKLTGHSYRVLYLAMSP 232 vDa SQV s WSpH kE S HGf N l iW Y k H RVL SP usage_00179.pdb 236 DGATVASAAADETLRLWR 253 usage_00232.pdb 233 DGRILSTAASDENLKFWR 250 usage_00233.pdb 233 DGRILSTAASDENLKFWR 250 usage_00234.pdb 233 DGRILSTAASDENLKFWR 250 usage_00292.pdb 236 DGATVASAAADETLRLWR 253 usage_00383.pdb 236 DGATVASAAADETLRLWR 253 usage_00384.pdb 236 DGATVASAAADETLRLWR 253 usage_00385.pdb 236 DGATVASAAADETLRLWR 253 usage_00386.pdb 236 DGATVASAAADETLRLWR 253 usage_00396.pdb 236 DGATVASAAADETLRLWR 253 usage_00397.pdb 236 DGATVASAAADETLRLWR 253 usage_00473.pdb 233 DGEAIVTGAGDETLRFWN 250 DG aA DE L Wr #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################