################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:09:26 2021 # Report_file: c_1126_3.html ################################################################################################ #==================================== # Aligned_structures: 10 # 1: usage_00045.pdb # 2: usage_00237.pdb # 3: usage_00345.pdb # 4: usage_00374.pdb # 5: usage_00375.pdb # 6: usage_00376.pdb # 7: usage_00377.pdb # 8: usage_00402.pdb # 9: usage_00536.pdb # 10: usage_00556.pdb # # Length: 180 # Identity: 39/180 ( 21.7%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 130/180 ( 72.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 46/180 ( 25.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00045.pdb 1 ----LLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAGT-----W-MEWDREIN 50 usage_00237.pdb 1 LLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARIL-------A-GG----TTWMEWD 48 usage_00345.pdb 1 -LSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARIL-----------AG-HTTWMEWD 47 usage_00374.pdb 1 ----IVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARIL-------SG---GS-GGWMEWD 45 usage_00375.pdb 1 ---GIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARIL-------SG---GS-GGWMEWD 46 usage_00376.pdb 1 ---GIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARIL-------SG---GS-GGWMEWD 46 usage_00377.pdb 1 ---GIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARIL-------SG---GS-GGWMEWD 46 usage_00402.pdb 1 ----IVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARIL-------SG---GS-GGWMEWD 45 usage_00536.pdb 1 -LSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARIL-----------A---TTWMEWD 45 usage_00556.pdb 1 ----IVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARIL-------S----S--GGWMEWD 43 ivqqqnnllraieaqqhllQltvwgikqlqaril wmEwd usage_00045.pdb 51 NYTSLIHSLIEESQNQQEKNEQELLE-----------GQLLSGIVQQQNNLLRAIEAQQH 99 usage_00237.pdb 49 REINNYTSLIHSLIEESQNQQEKNE-QELLEGSG-GQLLSGIVQQQNNLLRAIEAQQHLL 106 usage_00345.pdb 48 REINNYTSLIHSLIEESQNQQEKNE-QELLE----GQLLSGIVQQQNNLLRAIEAQQHLL 102 usage_00374.pdb 46 REINNYTSLIHSLIEESQNQQEKNE-QELLG----GSGGSGIVQQQNNLLRAIEAQQHLL 100 usage_00375.pdb 47 REINNYTSLIHSLIEESQNQQEKNE-QELLG----GSGGSGIVQQQNNLLRAIEAQQHLL 101 usage_00376.pdb 47 REINNYTSLIHSLIEESQNQQEKNE-QELLG----GSGGSGIVQQQNNLLRAIEAQQHLL 101 usage_00377.pdb 47 REINNYTSLIHSLIEESQNQQEKNE-QELLG----GSGGSGIVQQQNNLLRAIEAQQHLL 101 usage_00402.pdb 46 REINNYTSLIHSLIEESQNQQEKNE-QELLG------GGSGIVQQQNNLLRAIEAQQHLL 98 usage_00536.pdb 46 REINNYTSLIHSLIEESQNQQEKNE-QELLE---GGQLLSGIVQQQNNLLRAIEAQQHLL 101 usage_00556.pdb 44 REINNYTSLIHSLIEESQNQQEKNE-Q----------GGSGIVQQQNNLLRAIEAQQHLL 92 reinnytSLIhslieesqnqqekne sgivqqQnnllraieaqqhll usage_00045.pdb 100 LLQLTVWGIKQLQARIL--------WMEWDREINNYTSLIHSLIEESQNQQEKNEQELLE 151 usage_00237.pdb 107 QLTVWGIKQLQARI---L---GHTTWMEWDREINNYTSLIHSLIEESQNQQEKNEQELL- 159 usage_00345.pdb 103 QLTVWGIKQLQARI---L----T-TWMEWDREINNYTSLIHSLIEESQNQQEKNEQELLE 154 usage_00374.pdb 101 QLTVWGIKQLQARI---LSGG-SGGWMEWDREINNYTSLIHSLIEESQNQQEKNEQELLG 156 usage_00375.pdb 102 QLTVWGIKQLQARI---LSGG-SGGWMEWDREINNYTSLIHSLIEESQNQQEKNEQ---- 153 usage_00376.pdb 102 QLTVWGIKQLQARI---LSGG-SGGWMEWDREINNYTSLIHSLIEESQNQQEKNEQELLG 157 usage_00377.pdb 102 QLTVWGIKQLQARI---LSGG-SGGWMEWDREINNYTSLIHSLIEESQNQQEKNEQE--- 154 usage_00402.pdb 99 QLTVWGIKQLQARI---LSGG-SGGWMEWDREINNYTSLIHSLIEESQNQQEKNEQEL-- 152 usage_00536.pdb 102 QLTVWGIKQLQARI----------TWMEWDREINNYTSLIHSLIEESQNQQEKNEQELLE 151 usage_00556.pdb 93 QLTVWGIKQLQARI---LSGG-SGGWMEWDREINNYTSLIHSLIEESQNQQEKNEQEL-- 146 qLtvwgikqlQari WMEWDREINNYTSLIHSLIEESQNQQEKNEQ #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################