################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Fri Jan 22 10:40:39 2021 # Report_file: c_0542_12.html ################################################################################################ #==================================== # Aligned_structures: 19 # 1: usage_00062.pdb # 2: usage_00098.pdb # 3: usage_00105.pdb # 4: usage_00107.pdb # 5: usage_00108.pdb # 6: usage_00110.pdb # 7: usage_00111.pdb # 8: usage_00113.pdb # 9: usage_00114.pdb # 10: usage_00116.pdb # 11: usage_00118.pdb # 12: usage_00135.pdb # 13: usage_00144.pdb # 14: usage_00145.pdb # 15: usage_00146.pdb # 16: usage_00147.pdb # 17: usage_00177.pdb # 18: usage_00216.pdb # 19: usage_00232.pdb # # Length: 235 # Identity: 16/235 ( 6.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 24/235 ( 10.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 128/235 ( 54.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00062.pdb 1 ------------EEYRYVEAGIKESITL-------IE---DPGLKK-VEHVCHSGGKRIR 37 usage_00098.pdb 1 -KYE-ELFARIKEKAKLIDEKIFELIPE-------KD---PRVLYEAARHYPLAGGKRVR 48 usage_00105.pdb 1 -----DFDGYMLRKAKSVNKALEAAVQM-------KE---PLKIHESMRYSLLAGGKRVR 45 usage_00107.pdb 1 ------FDGYMLRKAKSVNKALEAAVQM-------KE---PLKIHESMRYSLLAGGKRVR 44 usage_00108.pdb 1 -----DFDGYMLRKAKSVNKALEAAVQM-------KE---PLKIHESMRYSLLAGGKRVR 45 usage_00110.pdb 1 ------FDGYMLRKAKSVNKALEAAVQM-------KE---PLKIHESMRYSLLAGGKRVR 44 usage_00111.pdb 1 -----DFDGYMLRKAKSVNKALEAAVQM-------KE---PLKIHESMRYSLLAGGKRVR 45 usage_00113.pdb 1 -----DFDGYMLRKAKSVNKALEAAVQM-------KE---PLKIHESMRYSLLAGGKRVR 45 usage_00114.pdb 1 -----DFDGYMLRKAKSVNKALEAAVQM-------KE---PLKIHESMRYSLLAGGKRVR 45 usage_00116.pdb 1 -----DFDGYMLRKAKSVNKALEAAVQM-------KE---PLKIHESMRYSLLAGGKRVR 45 usage_00118.pdb 1 -----DFDGYMLRKAKSVNKALEAAVQM-------KE---PLKIHESMRYSLLAGGKRVR 45 usage_00135.pdb 1 ----------LDKFPEVVRDRLTQFLDAQELTIAD-IGAPVTDAVAHLRSFVLNGGKRIR 49 usage_00144.pdb 1 HNSAFDFKLYMIRKAESVNAALDVSVPL-------RE---PLTVQEAVRYSLLAGGKRVR 50 usage_00145.pdb 1 -SAF-DFKLYMIRKAESVNAALDVSVPL-------RE---P--VQEAVRYSLLAGGKRVR 46 usage_00146.pdb 1 ------FMSYIITKAELVNKALDSAVPL-------RE---PLKIHEAMRYSLLAGGKRVR 44 usage_00147.pdb 1 ------FMSYIITKAELVNKALDSAVPL-------RE---PLKIHEAMRYSLLAGGKRVR 44 usage_00177.pdb 1 -----DFDGYMLRKAKSVNKALEAAVQM-------KE---PLKIHESMRYSLLAGGKRVR 45 usage_00216.pdb 1 -----------SMKKETIERRIEELVKP-------HF---NLLTESAMQYSVTAGGKRIR 39 usage_00232.pdb 1 ------PISYIIRKADSVNKALDSAVPL-------RE---PLKIHEAR-YSLLAGGKRVR 43 GGKR R usage_00062.pdb 38 PIILLLVSEICS--GS----YSRSLNAALAVE---HSASLIHDDLLDQGLVR--RNLPSA 86 usage_00098.pdb 49 PFVVLTSTEAVG--GD----PLRAIYPAVAIEL-IHNYSLVHDDI---M-----DMDETR 93 usage_00105.pdb 46 PMLCIAACELVG--GD----ESTAMPAACAVEM-IHTMSLMHDDL---P---CMDNDDLR 92 usage_00107.pdb 45 PMLCIAACELVG--GD----ESTAMPAACAVEM-IHTMSLMHDDL---P---CMDNDDLR 91 usage_00108.pdb 46 PMLCIAACELVG--GD----ESTAMPAACAVEM-IHTMSLMHDDL---P---CMDNDDLR 92 usage_00110.pdb 45 PMLCIAACELVG--GD----ESTAMPAACAVEM-IHTMSLMHDDL---P---CMDNDDLR 91 usage_00111.pdb 46 PMLCIAACELVG--GD----ESTAMPAACAVEM-IHTMSLMHDDL---P---CMDNDDLR 92 usage_00113.pdb 46 PMLCIAACELVG--GD----ESTAMPAACAVEM-IHTMSLMHDDL---P---CMDNDDLR 92 usage_00114.pdb 46 PMLCIAACELVG--GD----ESTAMPAACAVEM-IHTMSLMHDDL---P---CMDNDDLR 92 usage_00116.pdb 46 PMLCIAACELVG--GD----ESTAMPAACAVEM-IHTMSLMHDDL---P---CMDNDDLR 92 usage_00118.pdb 46 PMLCIAACELVG--GD----ESTAMPAACAVEM-IHTMSLMHDDL---P---CMDNDDLR 92 usage_00135.pdb 50 PLYAWAGFLAAQGHKNSSEKLESVLDAAASLEF-IQACALIHDDI--------------- 93 usage_00144.pdb 51 PLLCIAVCELVG--GD----EATAMSAACAVEM-IHTSSLIHDDL---P---CMDNADLR 97 usage_00145.pdb 47 PLLCIAVCELVG--GD----EATAMSAACAVEM-IHTSSLIHDDL---P---CMDNADLR 93 usage_00146.pdb 45 PVLCIAACELVG--GE----ESTAMPAACAVEM-IHTMSLIHDDL---P---CMDNDDLR 91 usage_00147.pdb 45 PVLCIAACELVG--GE----ESTAMPAACAVEM-IHTMSLIHDDL---P---CMDNDDLR 91 usage_00177.pdb 46 PMLCIAACELVG--GD----ESTAMPAACAVEM-IHTMSLMHDDL---P---CMDNDDLR 92 usage_00216.pdb 40 PLLVLTVGEDIG--VE----EERLVDVAVAVEL-FHTASLVHDDL---P---PIDNADFR 86 usage_00232.pdb 44 PVLCIAACELVG--GE----ESLA-PAACAVEIH---TSLIHDDL-------PCDNDDLR 86 P e A a E sL HDD usage_00062.pdb 87 P------EKF-GPSGALLCGDYLIAKSIA--FISP------Y----GEKVIQDFGKAG-- 125 usage_00098.pdb 94 RGKPTVHRIW-GVNMAILAGDLLFSKAFE--AVARA--E--IPPEKKARVLEVIVKAS-- 144 usage_00105.pdb 93 RGKPTNHMAF-GESVAVLAGDALLSFAFE--HVAAATKG--APPERIVRVLGELAVSIGS 147 usage_00107.pdb 92 RGKPTNHMAF-GESVAVLAGDALLSFAFE--HVAAATKG--APPERIVRVLGELAVSIGS 146 usage_00108.pdb 93 RGKPTNHMAF-GESVAVLAGDALLSFAFE--HVAAATKG--APPERIVRVLGELAVSIGS 147 usage_00110.pdb 92 RGKPTNHMAF-GESVAVLAGDALLSFAFE--HVAAATKG--APPERIVRVLGELAVSIGS 146 usage_00111.pdb 93 RGKPTNHMAF-GESVAVLAGDALLSFAFE--HVAAATKG--APPERIVRVLGELAVSIGS 147 usage_00113.pdb 93 RGKPTNHMAF-GESVAVLAGDALLSFAFE--HVAAATKG--APPERIVRVLGELAVSIGS 147 usage_00114.pdb 93 RGKPTNHMAF-GESVAVLAGDALLSFAFE--HVAAATKG--APPERIVRVLGELAVSIGS 147 usage_00116.pdb 93 RGKPTNHMAF-GESVAVLAGDALLSFAFE--HVAAATKG--APPERIVRVLGELAVSIGS 147 usage_00118.pdb 93 RGKPTNHMAF-GESVAVLAGDALLSFAFE--HVAAATKG--APPERIVRVLGELAVSIGS 147 usage_00135.pdb 94 -------IDSFGVSVSILAGDA-LVWAEDLQDSG-------L----SAEALARTRDAWRG 134 usage_00144.pdb 98 RGKPTNHKVY-GEDMAVLAGDALLALAFE--HMTVVSSGL-VAPERMIRAVVELARAIGT 153 usage_00145.pdb 94 RGKPTNHKVY-GEDMAVLAGDALLALAFE--HMTVVSSGL-VAPERMIRAVVELARAIGT 149 usage_00146.pdb 92 RGKPTNHKVF-GEDVAVLAGDALLSFAFE--HLASATSSDVVSPVRVVRAVGELAKAIGT 148 usage_00147.pdb 92 RGKPTNHKVF-GEDVAVLAGDALLSFAFE--HLASATSSDVVSPVRVVRAVGELAKAIGT 148 usage_00177.pdb 93 RGKPTNHMAF-GESVAVLAGDALLSFAFE--HVAAATKG--APPERIVRVLGELAVSIGS 147 usage_00216.pdb 87 RGKPSCHRAY-GEGIALLAGDGLFFLAFS--QIAKV-----R----EPKLFEEFSETAY- 133 usage_00232.pdb 87 RGKPTNHKVY-GEDVAVLAGDALLSFAFE--HLASATSSE-VSPARVVRAVGELAKAIGT 142 G a LaGD a usage_00062.pdb 126 ------DAEGEVLDLK------ENDY-----FKCIYKKTASLFAISASIGAYTGG 163 usage_00098.pdb 145 -NELCEGQARDLEFEKKS-TVTIEEY-----MEMIS-----GK------------ 175 usage_00105.pdb 148 -EGLVAGQVVDVCSEGMA-EVGLDHL-----EFIHHHKTAALLQGSVVLGAILGG 195 usage_00107.pdb 147 -EGLVAGQVVDVCSEGMA-EVGLDHL-----EFIHHHKTAALLQGSVVLGAILGG 194 usage_00108.pdb 148 -EGLVAGQVVDVCSEGMA-EVGLDHL-----EFIHHHKTAALLQGSVVLGAILGG 195 usage_00110.pdb 147 -EGLVAGQVVDVCSEGMA-EVGLDHL-----EFIHHH------------------ 176 usage_00111.pdb 148 -EGLVAGQVVDVCSEGMA------------------------------------- 164 usage_00113.pdb 148 -EGLVAGQVVDVCS----------------------------------------- 160 usage_00114.pdb 148 -EGLVAGQVVDVCSEGMA------------------------------------- 164 usage_00116.pdb 148 -EGLVAGQVVDVCSEGMA------------------------------------- 164 usage_00118.pdb 148 -EGLVAGQVVDVCSEGMA-EVGLDHL-----EFIHHHKTAALLQGSVVLGAILGG 195 usage_00135.pdb 135 RTEVIGGQLLDIYLESHA-NESVELADSVNRFKTAA----YTIARPLHLGASIAG 184 usage_00144.pdb 154 -TGLVAGQMID-------------------------------------------- 163 usage_00145.pdb 150 -TGLVAGQMIDL------------------------------------------- 160 usage_00146.pdb 149 -EGLVAGQVVD-------------------------------------------- 158 usage_00147.pdb 149 -EGLVAGQVVDISS----------------------------------------- 161 usage_00177.pdb 148 -EGLVAGQVVDVCSEGMA------------------------------------- 164 usage_00216.pdb 134 --KLLLGEAMDVEFERQEKEISVEMV-----EKMYSFKTGALFAFCFSAPFLLKG 181 usage_00232.pdb 143 -EGLVAGQVVD-------------------------------------------- 152 g d #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################