################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:33:35 2021 # Report_file: c_0890_3.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00005.pdb # 2: usage_00006.pdb # 3: usage_00007.pdb # 4: usage_00008.pdb # 5: usage_00009.pdb # 6: usage_00010.pdb # 7: usage_00025.pdb # 8: usage_00026.pdb # 9: usage_00051.pdb # 10: usage_00052.pdb # 11: usage_00053.pdb # # Length: 98 # Identity: 6/ 98 ( 6.1%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 29/ 98 ( 29.6%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 14/ 98 ( 14.3%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00005.pdb 1 -PEEMTELIQTALKGNFMEARELLDRLMVEYGM-SGEDIVAQLFREIIS----MPI-KDS 53 usage_00006.pdb 1 -PEEMTELIQTALKGNFMEARELLDRLMVEYGM-SGEDIVAQLFREIIS----MPI-KDS 53 usage_00007.pdb 1 -PEEMTELIQTALKGNFMEARELLDRLMVEYGM-SGEDIVAQLFREIIS----MPI-KDS 53 usage_00008.pdb 1 -PEEMTELIQTALKGNFMEARELLDRLMVEYGM-SGEDIVAQLFREIIS----MPI-KDS 53 usage_00009.pdb 1 -PEEMTELIQTALKGNFMEARELLDRLMVEYGM-SGEDIVAQLFREIIS----MPI-KDS 53 usage_00010.pdb 1 -PEEMTELIQTALKGNFMEARELLDRLMVEYGM-SGEDIVAQLFREIIS----MPI-KDS 53 usage_00025.pdb 1 RPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGL-ALIDLIEGIVKILED----YELQNEE 55 usage_00026.pdb 1 PHDILIEIVEKVKSGDFDEIKKYVNTFMKS-GWS----AASVVNQLHEYYITNDNF-DTN 54 usage_00051.pdb 1 -PEEMTELIQTALKGNFMEARELLDRLMVEYGM-SGEDIVAQLFREIIS----MPI-KDS 53 usage_00052.pdb 1 -PEEMTELIQTALKGNFMEARELLDRLMVEYGM-SGEDIVAQLFREIIS----MPI-KDS 53 usage_00053.pdb 1 -PEEMTELIQTALKGNFMEARELLDRLMVEYGM-SGEDIVAQLFREIIS----MPI-KDS 53 p e l g f ea l m G usage_00005.pdb 54 LKVQLIDKLGEVDFRLTEGANERIQLDAYLAYLSTL-- 89 usage_00006.pdb 54 LKVQLIDKLGEVDFRLTEGANERIQLDAYLAYLSTL-- 89 usage_00007.pdb 54 LKVQLIDKLGEVDFRLTEGANERIQLDAYLAYLSTL-- 89 usage_00008.pdb 54 LKVQLIDKLGEVDFRLTEGANERIQLDAYLAYLSTL-- 89 usage_00009.pdb 54 LKVQLIDKLGEVDFRLTEGANERIQLDAYLAYLSTL-- 89 usage_00010.pdb 54 LKVQLIDKLGEVDFRLTEGANERIQLDAYLAYLSTL-- 89 usage_00025.pdb 56 TRVHLLTKLADIEYSISKGGNDQIQGSAVIGAIKASFE 93 usage_00026.pdb 55 FKNQISWLLFTTDSRLNNGTNEHIQLLNLLVKISQL-- 90 usage_00051.pdb 54 LKVQLIDKLGEVDFRLTEGANERIQLDAYLAYLSTL-- 89 usage_00052.pdb 54 LKVQLIDKLGEVDFRLTEGANERIQLDAYLAYLSTL-- 89 usage_00053.pdb 54 LKVQLIDKLGEVDFRLTEGANERIQLDAYLAYLSTL-- 89 kvql kL d rl G Ne IQl a l s l #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################