################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:36:06 2021 # Report_file: c_0423_12.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00003.pdb # 2: usage_00004.pdb # 3: usage_00039.pdb # 4: usage_00052.pdb # 5: usage_00053.pdb # 6: usage_00054.pdb # 7: usage_00082.pdb # 8: usage_00100.pdb # 9: usage_00125.pdb # 10: usage_00126.pdb # 11: usage_00137.pdb # # Length: 92 # Identity: 44/ 92 ( 47.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 54/ 92 ( 58.7%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 17/ 92 ( 18.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00003.pdb 1 ---------GCDLGPDGRLLRGYHQSAYDGKDYIALNGDLRSWTAADMAAQNTQRKWEGN 51 usage_00004.pdb 1 ---------GCDLGPDGRLLRGYHQSAYDGKDYIALNGDLRSWTAADMAAQNTQRKWEGN 51 usage_00039.pdb 1 ----------CDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAA 50 usage_00052.pdb 1 ---------GCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQS 51 usage_00053.pdb 1 ----------CDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAA 50 usage_00054.pdb 1 GSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAA 60 usage_00082.pdb 1 ---------GCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAA 51 usage_00100.pdb 1 ----------CDLGPGGRLLRGYRQDAYDGADYIALNEDLRSWTAADTAAQITRRKWEAA 50 usage_00125.pdb 1 ---------GCDLGPDGRLLRGYHQSAYDGKDYIALNGDLRSWTAADMAAQNTQRKWEGN 51 usage_00126.pdb 1 ---------GCDLGPDGRLLRGYHQSAYDGKDYIALNGDLRSWTAADMAAQNTQRKWEGN 51 usage_00137.pdb 1 ---------GCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAA 51 CD G d R LRGY Q AYdG DYIAL DLrsWTAADmAAQ T KWE usage_00003.pdb 52 RYAER-FRAYLEGECLEWLRRYLENGKETLQ- 81 usage_00004.pdb 52 RYAER-FRAYLEGECLEWLRRYLENG------ 76 usage_00039.pdb 51 HVAEQ-LRAYLEGTCVEWLRRYLENGKETLQ- 80 usage_00052.pdb 52 GAAEH-YKAYLEGECVEWLHRYLKNGNATLL- 81 usage_00053.pdb 51 HVAEQ-LRAYLEGTCVEWLRRYLENGKETLQ- 80 usage_00054.pdb 61 HVAEQ-LRAYLEGTCVEWLRRYLENGKETLQ- 90 usage_00082.pdb 52 HVAEQ-LRAYLEGTCVEWLRRYLENGKETLQ- 81 usage_00100.pdb 51 GVAELQWRNYLETTCVEWLQRYLEMGKETLLR 82 usage_00125.pdb 52 RYAER-FRAYLEGECLEWLRRYLENGK----- 77 usage_00126.pdb 52 RYAER-FRAYLEGECLEWLRRYLENGK----- 77 usage_00137.pdb 52 HVAEQ-LRAYLEGTCVEWLRRYLENGKETLQR 82 AE raYLEg C EWL RYLenG #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################