################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:32:10 2021 # Report_file: c_0332_1.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00002.pdb # 2: usage_00003.pdb # 3: usage_00004.pdb # 4: usage_00005.pdb # 5: usage_00006.pdb # 6: usage_00010.pdb # 7: usage_00045.pdb # 8: usage_00046.pdb # 9: usage_00047.pdb # 10: usage_00048.pdb # 11: usage_00049.pdb # # Length: 108 # Identity: 28/108 ( 25.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 37/108 ( 34.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 25/108 ( 23.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00002.pdb 1 YRSAFSVGLETRVTVPNVPIRFTKIFYNQQNHYDGSTGKFYCNIPGLYYFSYHITVYMKD 60 usage_00003.pdb 1 YRSAFSVGLETRVTVPNVPIRFTKIFYNQQNHYDGSTGKFYCNIPGLYYFSYHITVYMKD 60 usage_00004.pdb 1 --SAFSVGLETRVTVPNVPIRFTKIFYNQQNHYDGSTGKFYCNIPGLYYFSYHITVYMKD 58 usage_00005.pdb 1 --SAFSVGLETRVTVPNVPIRFTKIFYNQQNHYDGSTGKFYCNIPGLYYFSYHITVYMKD 58 usage_00006.pdb 1 --SAFSVGLETRVTVPNVPIRFTKIFYNQQNHYDGSTGKFYCNIPGLYYFSYHITVYMKD 58 usage_00010.pdb 1 PVSAFTVILSKAYPAIGTPIPFDKILYNRQQHYDPRTGIFTCQIPGIYYFSYHVHVKGTH 60 usage_00045.pdb 1 -MPAFTAELTVPFPPVGAPVKFDKLLYNGRQNYNPQTGIFTCEVPGVYYFAYHVHCKGGN 59 usage_00046.pdb 1 ------------------PVKFDKLLYNGRQNYNPQTGIFTCEVPGVYYFAYHVHCKGGN 42 usage_00047.pdb 1 YRSAFSVGLETRVTVPNVPIRFTKIFYNQQNHYDGSTGKFYCNIPGLYYFSYHITVYMKD 60 usage_00048.pdb 1 --SAFSVGLETYVT---MPIRFTKIFYNQQNHYDGSTGKFHCNIPGLYYFAYHITVYMKD 55 usage_00049.pdb 1 YRSAFSVGLETY--IPNMPIRFTKIFYNQQNHYDGSTGKFHCNIPGLYYFAYHITVYMKD 58 P F K YN Y TG F C PG YYF YH usage_00002.pdb 61 VKVSLFKKDKAVLFTYDQYQEKNVDQASGSVLLHLEVGDQVWLQVY-G 107 usage_00003.pdb 61 VKVSLFKKDKAVLFTYDQYQEKNVDQASGSVLLHLEVGDQVWLQVY-G 107 usage_00004.pdb 59 VKVSLFKKDKAVLFTYDQYQEKNVDQASGSVLLHLEVGDQVWLQV--- 103 usage_00005.pdb 59 VKVSLFKKDKAVLFTYDQYQEKNVDQASGSVLLHLEVGDQVWLQV--- 103 usage_00006.pdb 59 VKVSLFKKDKAVLFTYDQYQEKNVDQASGSVLLHLEVGDQVWLQVYG- 105 usage_00010.pdb 61 VWVGLYKNGTPVMYTYDEYTKGYLDQASGSAIIDLTENDQVW------ 102 usage_00045.pdb 60 VWVALFKNNEPMMYTYDEYKKGFLDQASGSAVLLLRPGDQVF------ 101 usage_00046.pdb 43 VWVALFKNNEPMMYTYDEYKKGFLDQASGSAVLLLRPGDQVF------ 84 usage_00047.pdb 61 VKVSLFKKDKAVLFTYDQYQENVDQASGSVLLHLEV-GDQVWLQV--- 104 usage_00048.pdb 56 VKVSLFKKDKAMLFTYDQYQENNVDQASGSVLLHLEVGDQVWL----- 98 usage_00049.pdb 59 VKVSLFKKDKAMLFTYDQYQENNVDQASGSVLLHLEVGDQVWLQV--- 103 V V LfK TYD Y dqasgs l gDQV #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################