################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:46:41 2021 # Report_file: c_0517_3.html ################################################################################################ #==================================== # Aligned_structures: 12 # 1: usage_00011.pdb # 2: usage_00020.pdb # 3: usage_00021.pdb # 4: usage_00029.pdb # 5: usage_00084.pdb # 6: usage_00085.pdb # 7: usage_00086.pdb # 8: usage_00087.pdb # 9: usage_00153.pdb # 10: usage_00156.pdb # 11: usage_00176.pdb # 12: usage_00201.pdb # # Length: 141 # Identity: 10/141 ( 7.1%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 13/141 ( 9.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 39/141 ( 27.7%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00011.pdb 1 SELDWDEVMDVNLKALFFTTQAFAKELLA-KGRSGKVVNIASLLSFQGGIRVPSYTAAKH 59 usage_00020.pdb 1 -MSDFEWAFKLNLFSLFRLSQLAAPHMQK-A-GGGAILNISSMAGENTNVRMASYGSSKA 57 usage_00021.pdb 1 --------VDTNLKAPWQCAQEVVQHI-KAE-RKGSIINITSILSQSTNLGVSPYCASKA 50 usage_00029.pdb 1 -EALWDTIVSTNLKGAFFCAQAAGRI-AD-A-NGGAIVNLCSLTSYVGIPTAVPYGASKS 56 usage_00084.pdb 1 TEAQWDAVIDVNLKGVFNLTRLVGPQMQT-N-GYGSIINISSVVGVFGNIGQANYAATKA 58 usage_00085.pdb 1 TEAQWDAVIDVNLKGVFNLTRLVGPQMQT-N-GYGSIINISSVVGVFGNIGQANYAATKA 58 usage_00086.pdb 1 TEAQWDAVIDVNLKGVFNLTRLVGPQMQT-N-GYGSIINISSVVGVFGNIGQANYAATKA 58 usage_00087.pdb 1 TEAQWDAVIDVNLKGVFNLTRLVGPQMQT-N-GYGSIINISSVVGVFGNIGQANYAATKA 58 usage_00153.pdb 1 TTEEWRKLLSVNLDGVFFGTRLGIQRMKN-KGLGASIINMSSIEGFVGDPTLGAYNASKG 59 usage_00156.pdb 1 NYDSWNKIISVDLNGVYYCSHNIGKIFKK-N-GKGSLIITSSISGKI--QLQAPYNTAKA 56 usage_00176.pdb 1 SDADWHRTISINLDGVFYLCKRALPAL---K-EDSSIVTLASLAAYRGAYVNAHYGATKG 56 usage_00201.pdb 1 TTAEWRKLLAVNLDGVFFGTRLGIQRMKN-KGLGASIINMSSIEGFVGDPSLGAYNASKG 59 nL S Y K usage_00011.pdb 60 GVAGLTKLLANEWAA--KGINVNAIAPGYIETNNT------EALRAD-AARNKAILE--R 108 usage_00020.pdb 58 AVNHLTRNIAFDVGP--MGIRVNAIAPGAIKTDALA-----TVL--T-PEIERAMLK--H 105 usage_00021.pdb 51 GLRHLTEVA-VELAR--FGINVNAIAPGY-ITEIN------EEY--LTSEVGQQLLK--K 96 usage_00029.pdb 57 GLLGVTRALATEWAA--HNIRVNAIAPGYFRT----ATAGFY-E--D-EDWQSR-LE--K 103 usage_00084.pdb 59 GVIGLTMTWAKEFALKGANVRVNAIAPGYIMTDIL------KTV--P-QDLLDKFAA--L 107 usage_00085.pdb 59 GVIGLTMTWAKEFALKGANVRVNAIAPGYIMTDIL------KTV--P-QDLLDKFAA--L 107 usage_00086.pdb 59 GVIGLTMTWAKEFALKGANVRVNAIAPGYIMTDIL------KTV--P-QDLLDKFAA--L 107 usage_00087.pdb 59 GVIGLTMTWAKEFALKGANVRVNAIAPGYIMTDIL------KTV--P-QDLLDKFAA--L 107 usage_00153.pdb 60 AVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLV------DDL--E--GAEEMMSQRTK 109 usage_00156.pdb 57 ACTHLAKSLAIEWA---PFARVNTISPGYIDTDIT------DFA--S-KDMKAKWWQ--L 102 usage_00176.pdb 57 AMVSMTRALSRELAP---KTRVNGVSPGIIETPMT------SEL--L-KTRMDETMT--Q 102 usage_00201.pdb 60 AVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLV------DDL--P--GAEEAMSQRTK 109 a VN PG T usage_00011.pdb 109 IPAGRWGHSEDIAGAAVFLSS 129 usage_00020.pdb 106 TPLGRLGEAQDIANAALFLCS 126 usage_00021.pdb 97 IPTRKFVEFDDLNGPLLLLA- 116 usage_00029.pdb 104 IPQRRFGKESDIGGVAVFLCS 124 usage_00084.pdb 108 TMLNRLGQPEEIAKVALFLAS 128 usage_00085.pdb 108 TMLNRLGQPEEIAKVALFLAS 128 usage_00086.pdb 108 TMLNRLGQPEEIAKVALFLAS 128 usage_00087.pdb 108 TMLNRLGQPEEIAKVALFLAS 128 usage_00153.pdb 110 TPMGHIGEPNDIAWICVYLAS 130 usage_00156.pdb 103 TPLGREGLTQELVGGYLYLA- 122 usage_00176.pdb 103 TPLKRLGKPSEIASVIAFLCS 123 usage_00201.pdb 110 TPMGHIGEPNDIAYICVYLAS 130 g L #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################