################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:02:45 2021 # Report_file: c_1401_5.html ################################################################################################ #==================================== # Aligned_structures: 4 # 1: usage_00539.pdb # 2: usage_00540.pdb # 3: usage_00541.pdb # 4: usage_00542.pdb # # Length: 76 # Identity: 65/ 76 ( 85.5%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 65/ 76 ( 85.5%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 11/ 76 ( 14.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00539.pdb 1 ----AVIEAKRYLNNAKDILRDKGGKEDGFYQDSKYVKAGHTAYSGVLFALDHYFGKKTK 56 usage_00540.pdb 1 SAQEAVIEAKRYLNNAKDILRDKGGKEDGFYQDSKYVKAGHTAYSGVLFALDHYFGKKTK 60 usage_00541.pdb 1 --QEAVIEAKRYLNNAKDILRDKGGKEDGFYQDSKYVKAGHTAYSGVLFALDHYFGKKTK 58 usage_00542.pdb 1 ---EAVIEAKRYLNNAKDILRDKGGKEDGFYQDSKYVKAGHTAYSGVLFALDHYFG---- 53 AVIEAKRYLNNAKDILRDKGGKEDGFYQDSKYVKAGHTAYSGVLFALDHYFG usage_00539.pdb 57 GRKDVDWYKSNLAQQ- 71 usage_00540.pdb 61 GRKDVDWYKSNLAQQ- 75 usage_00541.pdb 59 GRKDVDWYKSNLAQQD 74 usage_00542.pdb 54 --KDVDWYKSNLAQQ- 66 KDVDWYKSNLAQQ #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################