################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:02:45 2021 # Report_file: c_1402_1.html ################################################################################################ #==================================== # Aligned_structures: 4 # 1: usage_00104.pdb # 2: usage_00986.pdb # 3: usage_00987.pdb # 4: usage_00988.pdb # # Length: 431 # Identity: 27/431 ( 6.3%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 132/431 ( 30.6%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 220/431 ( 51.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00104.pdb 1 ----------------------------------------------GSHMKDVQTETFSV 14 usage_00986.pdb 1 MKDVQTETFSVAESIEEISKANEEITNQLLGISKEMDNISTRIESISASVQETTAGSEEI 60 usage_00987.pdb 1 --------------------------------GSHMKDVQTETFSVAESIEEISKANEEI 28 usage_00988.pdb 1 -----------------------------------MKDVQTETFSVAESIEEISKANEEI 25 s e eei usage_00104.pdb 15 AESIEEISKANEEITNQLLGISKEMDNISTRIESISASVQETTAGSEEISSATKNIADSA 74 usage_00986.pdb 61 SSATKNIADSAQQAASFADQSTQLAKEAGDALKKVIEVTRMISNSAKDVERVVESFQKGA 120 usage_00987.pdb 29 TNQLLGISKEMDNISTRIESISASVQETTAGSEEISSATKNIADSAQQAASFADQSTQLA 88 usage_00988.pdb 26 TNQLLGISKEMDNISTRIESISASVQETTAGSEEISSATKNIADSAQQAASFADQSTQLA 85 Isk i is e e is t i sa s A usage_00104.pdb 75 QQAASFADQSTQLAKEAGDALKKVIEVTRMIS-NSAKDVERVVESFQKGAEEITSFVETI 133 usage_00986.pdb 121 EEITSFVETINAIAEQTNLLALNAAIEAARAGE--------------------------- 153 usage_00987.pdb 89 KEAGDALKKVIEVTRMISNSAKDVERVVESFQ-KGAEEITSFVETINAI-------AEQ- 139 usage_00988.pdb 86 KEAGDALKKVIEVTRMISNSAKDVERVVESFQ-KGAEEITSFVETINAI-------AEQ- 136 ea ak v v usage_00104.pdb 134 NAI----AEQTNLLALNAA------------IEAARAGEAGRGFAVVADEIRKLAEESQQ 177 usage_00986.pdb ------------------------------------------------------------ usage_00987.pdb 140 ---TNLLALNAAIEAAR--AGEAGRGFAVVADEIRKLA---------------------- 172 usage_00988.pdb 137 ---TNLLALNAAIEAAR--AGEAGRGFAVVADEIRKLA---------------------- 169 usage_00104.pdb 178 ASENVRRVVNEIRS-------------------IAEDAGKVSSEITARVEEGTKLADEAD 218 usage_00986.pdb 154 ----------------------------------------AGRGFAVVADEIRKLAEESQ 173 usage_00987.pdb 173 --------------EESQQASENVRRVVNEIRSIAEDAGKVSSEITARVEEGTKLADEAD 218 usage_00988.pdb 170 --------------EESQQASENVRRVVNEIRSIAEDAGKVSSEITARVEEGTKLADEAD 215 vsseitarveEgtKLAdEad usage_00104.pdb 219 EKLNSIVGAVERINEMLQNIAAAIEEQTAAVDEITTAMTENAKNAEEITNSVKEVNARLQ 278 usage_00986.pdb 174 QASENVRRVVNEIRSIAEDAGKVSSEITARVEEGTKLADEADEKLNSIVGAVERINEMLQ 233 usage_00987.pdb 219 EKLNSIVGAVERINEMLQNIAAAIEEQTAAVDEITTAMTENAKNAEEITNSVKEVNARLQ 278 usage_00988.pdb 216 EKLNSIVGAVERINEMLQNIAAAIEEQTAAVDEITTAMTENAKNAEEITNSVKEVNARLQ 275 eklnsivgaVerInemlqniaaaieEqTAaVdEiTtamtEnaknaeeItnsVkevNarLQ usage_00104.pdb 279 EISASTEEVTSRVQTIRENVQMLKEIVAR------------------------------- 307 usage_00986.pdb 234 NIAAAIEEQNAAVDEITTAMTENAKNAEEITNSVKEVNARLQEISASTEEVTSRVQTIRE 293 usage_00987.pdb 279 EISASTEEVTSRVQTIRENVQMLKE--------------IVARY---------------- 308 usage_00988.pdb 276 EISASTEEVTSRVQTIRENVQMLKE--------------I-------------------- 301 eIsAstEEvtsrVqtIrenvqmlke usage_00104.pdb ----------- usage_00986.pdb 294 NVQMLKEIVAR 304 usage_00987.pdb ----------- usage_00988.pdb ----------- #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################