################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:44:13 2021 # Report_file: c_0164_3.html ################################################################################################ #==================================== # Aligned_structures: 12 # 1: usage_00001.pdb # 2: usage_00007.pdb # 3: usage_00008.pdb # 4: usage_00009.pdb # 5: usage_00012.pdb # 6: usage_00023.pdb # 7: usage_00027.pdb # 8: usage_00050.pdb # 9: usage_00063.pdb # 10: usage_00075.pdb # 11: usage_00076.pdb # 12: usage_00088.pdb # # Length: 159 # Identity: 18/159 ( 11.3%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 36/159 ( 22.6%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 28/159 ( 17.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 -QQIFSFDQVFHPLSS----QSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGV 55 usage_00007.pdb 1 -QQIFSFDQVFHPLSS----QSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGV 55 usage_00008.pdb 1 GQQIFSFDQVFHPLSS----QSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGV 56 usage_00009.pdb 1 --QIFSFDQVFHPLSS----QSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGV 54 usage_00012.pdb 1 GQQIFSFDQVFHPLSS----QSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGV 56 usage_00023.pdb 1 --KQHMYDRVFDGNAT----QDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGA 54 usage_00027.pdb 1 KPVSFELDKVFSPQAS----QQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGT 56 usage_00050.pdb 1 --QIFSFDQVFHPLSS----QSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGV 54 usage_00063.pdb 1 --QIFSFDQVFHPLSS----QSDIFEMVSPLIQSALDGYNICIFAYGQSGSGKTYTMDGV 54 usage_00075.pdb 1 QVHEFKFDKIFDQQDT----NVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP 56 usage_00076.pdb 1 QVIPFKFDKIFDQQET----NDEIFKEVGQLIQSSLDGYNVCIFAYGQTGSGKTYTMLNP 56 usage_00088.pdb 1 ETLKYQFDAFYGERSTQQDI---YAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGS 57 D f f v l s dG N ifAYGqtG GKT Tm usage_00001.pdb 56 PESVGVIPRTVDLLFDSIRGYRN--LGWEYEIKATFLEIYNEVLYDLLSN---EQKDMEI 110 usage_00007.pdb 56 PESVGVIPRTVDLLFDSIRGYRN--LGWEYEIKATFLEIYNEVLYDLLSN---EQKDMEI 110 usage_00008.pdb 57 PESVGVIPRTVDLLFDSIRGYRN--LGWEYEIKATFLEIYNEVLYDLLSN---EQKDMEI 111 usage_00009.pdb 55 PESVGVIPRTVDLLFDSIRGYRN--LGWEYEIKATFLEIYNEVLYDLLSN---EQKDMEI 109 usage_00012.pdb 57 PESVGVIPRTVDLLFDSIRGYRN--LGWEYEIKATFLEIYNEVLYDLLSN---EQKDMEI 111 usage_00023.pdb 55 DSNPGLTPRAMSELFRIMKKDSN---KFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDI 111 usage_00027.pdb 57 AENPGINQRALQLLFSEVQEKAS---DWEYTITVSAAEIYNEVLRDLLGKE--PQEKLEI 111 usage_00050.pdb 55 PESVGVIPRTVDLLFDSIRGYRN--LGWEYEIKATFLEIYNEVLYDLLSN---EQKDMEI 109 usage_00063.pdb 55 PESVGVIPRTVDLLFDSIRGYRN--LGWEYEIKATFLEIYNEVLYDLLSN---EQKDMEI 109 usage_00075.pdb 57 G--DGIIPSTISHIFNWINKLKT--KGWDYKVNAEFIEIYNENIVDLLRS--SIGLKHEI 110 usage_00076.pdb 57 G--DGIVPATINHIFSWIDKLAA--RGWSYKVSCEFIEIYNENIVDLLRS-----SKHEI 107 usage_00088.pdb 58 PEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDP---ASGDLVI 114 G p f w EiY e DLL I usage_00001.pdb 111 RMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNR-- 147 usage_00007.pdb 111 RMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKM---- 145 usage_00008.pdb 112 RMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRA- 149 usage_00009.pdb 110 RMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRA- 147 usage_00012.pdb 112 RMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNR-- 148 usage_00023.pdb 112 KKDS-K-GMVSVENVTVVSISTYEELKTIIQRGSEQ-R- 146 usage_00027.pdb 112 RLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTT 150 usage_00050.pdb 110 RMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNR-- 146 usage_00063.pdb 110 RMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMN--- 145 usage_00075.pdb 111 RHDQE-TKTTTITNVTSVKLESEEMVEIILKKA------ 142 usage_00076.pdb 108 RHDQE-LKTTYITNITTCVLDSRDTVDKVLKRANKL--- 142 usage_00088.pdb 115 REDC--RGNILIPGLSQKPISSFADFERHFLPASR---- 147 r t #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################