################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:20:00 2021 # Report_file: c_1386_115.html ################################################################################################ #==================================== # Aligned_structures: 5 # 1: usage_00005.pdb # 2: usage_00043.pdb # 3: usage_00227.pdb # 4: usage_00651.pdb # 5: usage_01035.pdb # # Length: 65 # Identity: 1/ 65 ( 1.5%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 9/ 65 ( 13.8%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 26/ 65 ( 40.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00005.pdb 1 DLD---EQIRHMLFSWAERQAG----Q------PGAVGLLVQALEQSD---RQDVAEEVR 44 usage_00043.pdb 1 ------HRLRELKIQVKEFADKEEGG----DVKAVCLTLFLLALRARN---EHRQADELE 47 usage_00227.pdb 1 ---------RELKIQVKEFADKEEGG----DVKAVCLTLFLLALRARN---EHRQADELE 44 usage_00651.pdb 1 -QK---HRLRDLKNQVKTFAEKEEGG----DVKSVCLTLFLLALRAGN---EHKQADELE 49 usage_01035.pdb 1 --LREKQAKLAEKIREFNDARQ-----RGTP--FYICRDLADLESKSGDRHGPHIVEAYR 51 r k a l al a e usage_00005.pdb 45 AVLE- 48 usage_00043.pdb 48 AIMQ- 51 usage_00227.pdb 45 AIM-- 47 usage_00651.pdb 50 AM--- 51 usage_01035.pdb 52 AVMEM 56 A #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################