################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:34:23 2021 # Report_file: c_0557_6.html ################################################################################################ #==================================== # Aligned_structures: 16 # 1: usage_00005.pdb # 2: usage_00006.pdb # 3: usage_00038.pdb # 4: usage_00101.pdb # 5: usage_00104.pdb # 6: usage_00116.pdb # 7: usage_00117.pdb # 8: usage_00118.pdb # 9: usage_00133.pdb # 10: usage_00134.pdb # 11: usage_00165.pdb # 12: usage_00170.pdb # 13: usage_00197.pdb # 14: usage_00212.pdb # 15: usage_00217.pdb # 16: usage_00218.pdb # # Length: 90 # Identity: 0/ 90 ( 0.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 4/ 90 ( 4.4%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 58/ 90 ( 64.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00005.pdb 1 ------------VMTQSPSSLAVSAGERVTLNCKASQNVR---------NNIAWYQQKPG 39 usage_00006.pdb 1 D---------I-VMTQSPSSLAVSAGERVTLNCKASQNVR---------NNIAWYQQKPG 41 usage_00038.pdb 1 D---------I-VLTQSPDSLAVSLGERATINCKSSQSVLDS-S-N-SKNYLAWYQQKPG 47 usage_00101.pdb 1 -------------PIFGPQEVSSIEGDSVSITCYYPD--TSV--NR-HT-RKYWCRQGAS 41 usage_00104.pdb 1 ------------VMSQSPSSLAVSAGEKVTMSCKSSQSLLNS-R-T-RKNYLAWYQQKPG 45 usage_00116.pdb 1 Q---------I-VMTQSPSSLTVTAGEKVTMSCKSSQSLLNS-G-N-QKNYLTWYQQKPG 47 usage_00117.pdb 1 D---------I-VMTQAAPSVPVTPGESVSISCRSSKSLLHS---N-GNTYLYWFLQRPG 46 usage_00118.pdb 1 ----------I-VMTQAAPSVPVTPGESVSISCRSSKSLLHS---N-GNTYLYWFLQRPG 45 usage_00133.pdb 1 ----------I-QLTQSPSSLAMSGGQKVTMRCKSSQSLLNS-R-N-ERNYLAWYQQKPG 46 usage_00134.pdb 1 ----------I-QLTQSPSSLAMSGGQKVTMRCKSSQSLLNS-R-N-ERNYLAWYQQKPG 46 usage_00165.pdb 1 -VTDVDQRSIALDFKADG----------DKLTVTVPS--GKNLV-QSGWYMMFVTD--GE 44 usage_00170.pdb 1 ------------VMTQSPLSLSVTPGEPASISCRSSQSLLRR---D-GHNDLEWYLQKPG 44 usage_00197.pdb 1 D---------I-VLTQSPDSLAVSLGERATINCKSSQSVLDS-S-N-SKNYLAWYQQKPG 47 usage_00212.pdb 1 E---------I-VMTQAAPSVPVTPGESVSISCRSSKSLLHS---N-GNTYLNWFLQRPG 46 usage_00217.pdb 1 ----------I-VMTQSPSSLTVTAGEKVTMTCKSSQSLFNS-G-N-QKNFLTWYQQIPG 46 usage_00218.pdb 1 ----------I-VMTQSPSSLTVTAGEKVTMTCKSSQSLFNS-G-N-QKNFLTWYQQIPG 46 c w usage_00005.pdb 40 QSP-KLLIYY-------------------- 48 usage_00006.pdb 42 QSP-KLLIYY-------------------- 50 usage_00038.pdb 48 QPP-KLLIYW-------------------- 56 usage_00101.pdb 42 GMC-TTLISS-------------------- 50 usage_00104.pdb 46 QSP-KVLIYW--ASTRESGVPDRFTGRGSG 72 usage_00116.pdb 48 QPP-KLLIYW-------------------- 56 usage_00117.pdb 47 QSP-QLLIYR-------------------- 55 usage_00118.pdb 46 QSP-QLLIYR-------------------- 54 usage_00133.pdb 47 QSP-KLLVYF-------------------- 55 usage_00134.pdb 47 QSP-KLLVYF-------------------- 55 usage_00165.pdb 45 GTPSKAEWVRVP------------------ 56 usage_00170.pdb 45 QSP-QPLIYL-------------------- 53 usage_00197.pdb 48 QPP-KLLIYW-------------------- 56 usage_00212.pdb 47 QSP-QLLIYR-------------------- 55 usage_00217.pdb 47 QPP-KLLIYW-------------------- 55 usage_00218.pdb 47 QPP-KLLIYW-------------------- 55 p l #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################