################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:02:44 2021 # Report_file: c_0923_80.html ################################################################################################ #==================================== # Aligned_structures: 13 # 1: usage_00024.pdb # 2: usage_00248.pdb # 3: usage_00249.pdb # 4: usage_00420.pdb # 5: usage_00421.pdb # 6: usage_00452.pdb # 7: usage_00498.pdb # 8: usage_00543.pdb # 9: usage_00551.pdb # 10: usage_00658.pdb # 11: usage_00741.pdb # 12: usage_00828.pdb # 13: usage_01008.pdb # # Length: 46 # Identity: 10/ 46 ( 21.7%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 21/ 46 ( 45.7%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 9/ 46 ( 19.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00024.pdb 1 --VGSTAVVALVCSS---HIVVSNCGDSRAVLFRGKEAMPLS---- 37 usage_00248.pdb 1 -TVGSTSVVAVVFPT---HIFVANCGDSRAVLCRGKTPLALS---- 38 usage_00249.pdb 1 -TVGSTSVVAVVFPT---HIFVANCGDSRAVLCRGKTPLALS---- 38 usage_00420.pdb 1 --VGSTAVVSVVTPE---KIIVSNCGDSRAVLCRNGVAIPLS---- 37 usage_00421.pdb 1 --VGSTAVVSVVTPE---KIIVSNCGDSRAVLCRNGVAIPLS---- 37 usage_00452.pdb 1 TVSGTTLTAVAVFEPGQGGPLVVNIGDSPLYRIRDGHMEQLT---- 42 usage_00498.pdb 1 -TVGSTSVVAVVFPS---HIFVANCGDSRAVLCRGKTALPLS---- 38 usage_00543.pdb 1 --VGSTAVVALVCSS---HIVVSNCGDSRAVLFRGKEAMPLS---- 37 usage_00551.pdb 1 -TVGSTSVVAVVFPS---HIFVANCGDSRAVLCRGKTALPLS---- 38 usage_00658.pdb 1 -TVGSTSVVAVVFPT---HIFVANCGDSRAVLCRGKTPLALSVDHK 42 usage_00741.pdb 1 --VGSTAVVALVCSS---HIVVSNCGDSRAVLFRGKEAMPLS---- 37 usage_00828.pdb 1 --VGSTAVVALVCSS---HIVVSNCGDSRAVLFRGKEAMPLS---- 37 usage_01008.pdb 1 -TVGSTSVVAVVFPS---HIFVANCGDSRAVLCRGKTALPLS---- 38 vGsT vv V i V NcGDSravl R Ls #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################