################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:12:48 2021 # Report_file: c_0956_1.html ################################################################################################ #==================================== # Aligned_structures: 5 # 1: usage_00171.pdb # 2: usage_00338.pdb # 3: usage_00508.pdb # 4: usage_00509.pdb # 5: usage_00510.pdb # # Length: 85 # Identity: 36/ 85 ( 42.4%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 52/ 85 ( 61.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 33/ 85 ( 38.8%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00171.pdb 1 ----GGMVWRADTY----SNV---------YGKNHDTGVSPVFAGGVEYAI----TPEIA 39 usage_00338.pdb 1 DLDIYTRLGGMVWRADTSDKDGNGYISAAE------ASVSPVFAGGVEYVIRRRITPEIA 54 usage_00508.pdb 1 ----GGMVWRADTY----SNV---------YGKNHDTGVSPVFAGGVEYAI----TPEIA 39 usage_00509.pdb 1 ----GGMVWRADTY----SNV---------YGKNHDTGVSPVFAGGVEYAI----TPEIA 39 usage_00510.pdb 1 ----GGMVWRADTY----SNV---------YGKNHDTGVSPVFAGGVEYAI----TPEIA 39 ggmvwradty snv tgVSPVFAGGVEYaI TPEIA usage_00171.pdb 40 TRLEYQWTN-----GMLSLGVSYRF 59 usage_00338.pdb 55 TRLEYQWTNNASDNGMLSLGVSYR- 78 usage_00508.pdb 40 TRLEYQWTN-----GMLSLGVSYRF 59 usage_00509.pdb 40 TRLEYQWTN-----GMLSLGVSYRF 59 usage_00510.pdb 40 TRLEYQWTN-----GMLSLGVSYRF 59 TRLEYQWTN GMLSLGVSYR #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################