################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:02:37 2021 # Report_file: c_0233_9.html ################################################################################################ #==================================== # Aligned_structures: 9 # 1: usage_00009.pdb # 2: usage_00010.pdb # 3: usage_00016.pdb # 4: usage_00020.pdb # 5: usage_00021.pdb # 6: usage_00022.pdb # 7: usage_00121.pdb # 8: usage_00126.pdb # 9: usage_00129.pdb # # Length: 186 # Identity: 45/186 ( 24.2%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 69/186 ( 37.1%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 51/186 ( 27.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00009.pdb 1 DYLFKLLLIGNSGVGKSCLLLRFSD-DTYT---NDYIST---IGVDFKIKTVELDGKTVK 53 usage_00010.pdb 1 DYLFKLLLIGDSGVGKNCLLLRFAD-DTYT---ESYIST---IGVDFKIRTIELDGKTIK 53 usage_00016.pdb 1 DYLFKLLLIGDSGVGKSCLLLRFAD-DTYT---ESYIST---IGVDFKIRTIELDGKTIK 53 usage_00020.pdb 1 -YLFKLLLIGDSGVGKSCLLLRFAD-DTYT---DSYISTIGV---DFKIRTISLENKTVK 52 usage_00021.pdb 1 DHLFKLLIIGDSGVGKSSLLLRFADNT--SYIT-----T---IGVDFKIRTVEINGEKVK 50 usage_00022.pdb 1 DHLFKLLIIGDSGVGKSSLLLRFADNTFGSYIT-----T---IGVDFKIRTVEINGEKVK 52 usage_00121.pdb 1 DYLFKLLLIGNSGVGKSCLLLRFSD-DTYT---NDYIST---IGVDFKIKTVELDGKTVK 53 usage_00126.pdb 1 ----KLLLIGNSGVGKSCLLLRFSD-DTYT---NDYIST---IGVDFKIKTVELDGKTVK 49 usage_00129.pdb 1 -RIFKIIVIGDSNVGKTCLTYRFCA-GRFP---DRTEAT---IGVDFRERAVDIDGERIK 52 Kll IG SgVGK LllRF d T DFki t g K usage_00009.pdb 54 LQIWDT--AGQERFRTI-TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTV 109 usage_00010.pdb 54 LQIWDT--AGQERFRTI-TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENV 109 usage_00016.pdb 54 LQIWDT--AGQERFRTI-TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENV 109 usage_00020.pdb 53 LQIWDTAG------------SYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYA-MENV 99 usage_00021.pdb 51 LQIWDT--AGQERFRTI-TSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC--DDV 105 usage_00022.pdb 53 LQIWDT--AGQERFRTI-TSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC--DDV 107 usage_00121.pdb 54 LQIWDT--AGQERFRTI-TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTV 109 usage_00126.pdb 50 LQIWDT--AGQERFRTI-TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTV 105 usage_00129.pdb 53 IQLWDT--AGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDI 110 lQiWDT YYRg Hg i VYDvT SF vk W Ei v usage_00009.pdb 110 LKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALD-S--TNVEDAFLTMARQIKE 166 usage_00010.pdb 110 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKN-A--TNVEQSFMTMAAEIKK 166 usage_00016.pdb 110 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKN-A--TNVEQSFMTMAAEIKK 166 usage_00020.pdb 100 NKLLVGNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKN-A--YNVEQAFHTMAGEIKK 156 usage_00021.pdb 106 CRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKE-N--VNVEEMFNCITELVLR 162 usage_00022.pdb 108 CRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKE-N--VNVEEMFNCITELVLR 164 usage_00121.pdb 110 LKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALD-S--TNVEDAFLTMARQIK- 165 usage_00126.pdb 106 LKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALD-S--TNVEDAFLTMARQIKE 162 usage_00129.pdb 111 PRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA----- 165 LVGNK D vV a fA ETSA nVE F usage_00009.pdb 167 SM---- 168 usage_00010.pdb 167 RM---- 168 usage_00016.pdb 167 RM---- 168 usage_00020.pdb 157 RVQ--- 159 usage_00021.pdb 163 AKKDNL 168 usage_00022.pdb 165 AKKDNL 170 usage_00121.pdb ------ usage_00126.pdb 163 S----- 163 usage_00129.pdb ------ #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################