################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:09:52 2021 # Report_file: c_1408_107.html ################################################################################################ #==================================== # Aligned_structures: 4 # 1: usage_00564.pdb # 2: usage_00734.pdb # 3: usage_01254.pdb # 4: usage_01255.pdb # # Length: 90 # Identity: 15/ 90 ( 16.7%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 42/ 90 ( 46.7%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 22/ 90 ( 24.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00564.pdb 1 -----NESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAA------AQQQESATTQKAEK 49 usage_00734.pdb 1 -SWYWDTVTKICVFLFAFVVPILIITVCYGLMLLRL----RS-VRLLSGS--KEKDRSLR 52 usage_01254.pdb 1 PQDYWGPVFAICIFLFSFIVPVLVISVCYSLMIRRL----RGVR-LLSGS--REKDRNLR 53 usage_01255.pdb 1 PQDYWGPVFAICIFLFSFIVPVLVISVCYSLMIRRL----------------EK-DRNLR 43 vf Ic Flf FivP lvI vCY lm rl dr lr usage_00564.pdb 50 EVTRMVIIMVIAFLICWLPYAGVAFYIFTH 79 usage_00734.pdb 53 RITRMVLVVVGAFVVCWAPIHIFVIVWTLV 82 usage_01254.pdb 54 RITRLVLVVVAVFVGCWTPVQVFVLAQGLG 83 usage_01255.pdb 44 RITRLVLVVVAVFVGCWTPVQVFVLAQGLG 73 riTR VlvvV Fv CW P fv l #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################