################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 07:19:05 2021 # Report_file: c_0121_14.html ################################################################################################ #==================================== # Aligned_structures: 52 # 1: usage_00010.pdb # 2: usage_00011.pdb # 3: usage_00012.pdb # 4: usage_00023.pdb # 5: usage_00050.pdb # 6: usage_00057.pdb # 7: usage_00071.pdb # 8: usage_00072.pdb # 9: usage_00089.pdb # 10: usage_00113.pdb # 11: usage_00151.pdb # 12: usage_00169.pdb # 13: usage_00170.pdb # 14: usage_00201.pdb # 15: usage_00202.pdb # 16: usage_00204.pdb # 17: usage_00205.pdb # 18: usage_00206.pdb # 19: usage_00224.pdb # 20: usage_00236.pdb # 21: usage_00237.pdb # 22: usage_00241.pdb # 23: usage_00257.pdb # 24: usage_00258.pdb # 25: usage_00274.pdb # 26: usage_00277.pdb # 27: usage_00278.pdb # 28: usage_00319.pdb # 29: usage_00320.pdb # 30: usage_00321.pdb # 31: usage_00322.pdb # 32: usage_00336.pdb # 33: usage_00340.pdb # 34: usage_00341.pdb # 35: usage_00343.pdb # 36: usage_00353.pdb # 37: usage_00355.pdb # 38: usage_00356.pdb # 39: usage_00357.pdb # 40: usage_00376.pdb # 41: usage_00386.pdb # 42: usage_00392.pdb # 43: usage_00394.pdb # 44: usage_00407.pdb # 45: usage_00434.pdb # 46: usage_00452.pdb # 47: usage_00467.pdb # 48: usage_00491.pdb # 49: usage_00509.pdb # 50: usage_00530.pdb # 51: usage_00536.pdb # 52: usage_00545.pdb # # Length: 151 # Identity: 17/151 ( 11.3%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 24/151 ( 15.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 58/151 ( 38.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00010.pdb 1 --QLVQSGGGVVQPRRSLRLSCAASGFT--FSSYAMHWVRQAPGKGLEWVAVISYDGRNK 56 usage_00011.pdb 1 --QLVQSGGGVVQPRRSLRLSCAASGFT--FSSYAMHWVRQAPGKGLEWVAVISYDGRNK 56 usage_00012.pdb 1 --QLVQSGGGVVQPRRSLRLSCAASGFT--FSSYAMHWVRQAPGKGLEWVAVISYDGRNK 56 usage_00023.pdb 1 -VQLQESGGGLVQPGGSLKLSCAASGFT--FRDYYMYWVRQTPEKRLEWVAFISNGGGST 57 usage_00050.pdb 1 --QLVESGGGLVQPGGSRKLSCAASGFT--FSNFGMHWVRQAPEKGLEWVAYISSGGSSI 56 usage_00057.pdb 1 -VQLLESGGGLVQPGGSLRLSCAASGFR--ISDEDMGWVRQAPGKGLEWVSSIYGPSGST 57 usage_00071.pdb 1 --QLVESGGGLVQPGGSLRLSCAASGFN--LYYYSIHWVRQAPGKGLEWVASISPYSSST 56 usage_00072.pdb 1 --QLVESGGGLVQPGGSLRLSCAASGFN--LYYYSIHWVRQAPGKGLEWVASISPYSSST 56 usage_00089.pdb 1 -VQLVESGGGLVQPGGSLRLSCVTSGFT--FRKFGMSWVRQAPGKGLEWVASIVTGGRKT 57 usage_00113.pdb 1 --QLLESGGGLVQPGGSLRLSCAASGFT--FSRYVMWWVRQAPGKGLEWVSYIWPSGGNT 56 usage_00151.pdb 1 -VQLVESGGGLVKPGGSLKLSCAASGFT--FSSYAMSWVRQSPEKRLEWVAEVSSDGSYA 57 usage_00169.pdb 1 -VKLVESGGGLVKPGGSLKLSCAASGFT--FSSYTMSWVRQTPEKRLEWVAIISSGGSYT 57 usage_00170.pdb 1 -VQLVESGGGLVQPGGSLRLSCAASGFD--IYDDDIHWVRQAPGKGLEWVAYIAPSYGYT 57 usage_00201.pdb 1 --SVEESGGRLVTPGTPLTLTCTVSGFS--LSSYPMNWVRQAPGKGLEWIGGIGTSG-NI 55 usage_00202.pdb 1 --SVEESGGRLVTPGTPLTLTCTVSGFS--LSSYPMNWVRQAPGKGLEWIGGIGTSG-NI 55 usage_00204.pdb 1 -VKLLESGGGLVQPGGSQKLSCAASGFD--FSGYWMSWVRQAPGKGLEWIGEINPDSSTI 57 usage_00205.pdb 1 -VKLLESGGGLVQPGGSQKLSCAASGFD--FSGYWMSWVRQAPGKGLEWIGEINPDSSTI 57 usage_00206.pdb 1 -VKLLESGGGLVQPGGSQKLSCAASGFD--FSGYWMSWVRQAPGKGLEWIGEINPDSSTI 57 usage_00224.pdb 1 -VQLVESGGGLVQPGGSLRLSCAASGYT--FTSYVIHWVRQAPGKGLEWVGYNNPYNAGT 57 usage_00236.pdb 1 -VQLVESGGGLVQPGGSLRLSCAASGFT--FSNYGIHWVRQAPGKGLEWVGWITPDGGYT 57 usage_00237.pdb 1 -VQLVESGGGLVQPGGSLRLSCAASGFT--FSNYGIHWVRQAPGKGLEWVGWITPDGGYT 57 usage_00241.pdb 1 -VQLVESGGGVVQPGRSLRLSCAASGFT--FSVYGMNWVRQAPGKGLEWVAIIWYDGDNQ 57 usage_00257.pdb 1 -VKLVESGGGLVQPGGSRKLSCAASGFT--FSSFGMHWVRQAPEKGLEWVAYISSGSSTI 57 usage_00258.pdb 1 -VQLVESGGGVVQPGRSLRLSCAASGFT--FSTYAMHWVRQAPGKGLEWVAVISYDANYK 57 usage_00274.pdb 1 --QLQESGGGLVQPGGSLRLSCAASGFT--FKYDYMYWVRQAPGKGLEWVATISDGGSYT 56 usage_00277.pdb 1 EVQLLESGGGLVQPGGSLRLSCAASGFTFS--HYIMMWVRQAPGKGLEWVSGIYSSGGIT 58 usage_00278.pdb 1 -VQLLESGGGLVQPGGSLRLSCAASG------HYIMMWVRQAPGKGLEWVSGIYSSGGIT 53 usage_00319.pdb 1 --QLLESGGGLVQPGGSLRLSCAASGFT--FSIYPMFWVRQAPGKGLEWVSWIGPSGGIT 56 usage_00320.pdb 1 --QLLESGGGLVQPGGSLRLSCAASGFT--FSIYPMFWVRQAPGKGLEWVSWIGPSGGIT 56 usage_00321.pdb 1 --QLLESGGGLVQPGGSLRLSCAASGFT--FSIYPMFWVRQAPGKGLEWVSWIGPSGGIT 56 usage_00322.pdb 1 --QLLESGGGLVQPGGSLRLSCAASGFT--FSIYPMFWVRQAPGKGLEWVSWIGPSGGIT 56 usage_00336.pdb 1 --QLVQSGGGVVQPGRSLRLSCAASEFT--FRMYATHWVRQAPGKGLEWVALISYDGSNK 56 usage_00340.pdb 1 -EQLVESGGGVVQPGGSLRLSCLASGFT--FHKYGMHWVRQAPGKGLEWVALISDDGMRK 57 usage_00341.pdb 1 -EQLVESGGGVVQPGGSLRLSCLASGFT--FHKYGMHWVRQAPGKGLEWVALISDDGMRK 57 usage_00343.pdb 1 --QLVESGGGLVQPGGSLRLSCAASGFN--IKDTYIHWVRQAPGKGLEWVARIYPTNGYT 56 usage_00353.pdb 1 -EQLVESGGGVVQPGGSLRLSCLASGFT--FHKYGMHWVRQAPGKGLEWVALISDDGMRK 57 usage_00355.pdb 1 -VQLLESGGGLVQPGGSLRLSCAASGFT--FSSYAMSWVRQAPGKGLEWVSTISSGGSYT 57 usage_00356.pdb 1 -VQLLESGGGLVQPGGSLRLSCAASGFT--FSSYAMSWVRQAPGKGLEWVSTISSGGSYT 57 usage_00357.pdb 1 -VKLVESGGGLVKPGGSLKLSCAASGFI--FSNYAMSWVRQTPEKRLEWVATISGGGRNI 57 usage_00376.pdb 1 -VKLLESGGGLAQPGGSLKLSCAASGFD--FRRYWMTWVRQAPGKGLEWIGEINPDSRTI 57 usage_00386.pdb 1 --QLLESGGGLVQPGGSLRLSCAVSGID--LSNYAINWVRQAPGKGLEWIGIIWASG-TT 55 usage_00392.pdb 1 -VKLVESGGGLVKPGGSLKLSCAASGFA--FSSYDMSWFCQTPEKRLEWVASISSGGSYT 57 usage_00394.pdb 1 --QLVESGGGVVQPGRSLRLDCKASGIT--FSNSGMHWVRQAPGKGLEWVAVIWYDGSKR 56 usage_00407.pdb 1 --QLVESGGGLVQPGGSLRLSCAASGFT--LSGDWIHWVRQAPGKGLEWLGEISAAGGYT 56 usage_00434.pdb 1 --QLVESGGGLVQPGGSLRLSCSASGFT--FSTYSMHWVRQAPGKGLEYVSAITGEGDSA 56 usage_00452.pdb 1 --QLVESGGGLVQPGGSLRLSCAASGFT--FLGYGIHWVRQAPGKGLEWVGWISPAGGST 56 usage_00467.pdb 1 -VQLVESGGGLVQPGGSLRLSCSASGFT--FSTYSMHWVRQAPGKGLEYVSAITGEGDSA 57 usage_00491.pdb 1 -VQLVESGGGLVQPGRSLKLSCAASGFT--FSNYGMAWVRQTPTKGLEWIASISAGGDKT 57 usage_00509.pdb 1 -VQLVESGGGLVQPGGSLRLSCAASGFS--LTVYSVHWVRQAPGKGLEWVGALWGSGG-T 56 usage_00530.pdb 1 --QLKESGGRLVAPGTPLTLTCTVSGFD--ISDYAMIWVRQAPGKGLEWIGIIYGGSNKL 56 usage_00536.pdb 1 --QLLESGGGLVQPGGSLRLSCAVSGID--LSNYAINWVRQAPGKGLEWIGIIWASG-TT 55 usage_00545.pdb 1 -VQLVESGGGLVQPGKSLKLSCEASGFT--FSGYGMHWVRQAPGRGLESVAYITSSSINI 57 SGG v P L C Sg WvrQ P k LE usage_00010.pdb 57 YYADSVKGRFTVSRDNSKNTLYLQMNSLRAEDTSVYYCARELL--MD------------- 101 usage_00011.pdb 57 YYADSVKGRFTVSRDNSKNTLYLQMNSLRAEDTSVYYCARELL--MD------------- 101 usage_00012.pdb 57 YYADSVKGRFTVSRDNSKNTLYLQMNSLRAEDTSVYYCARELL--MD------------- 101 usage_00023.pdb 58 YYPDTVKGRFTISRDNAKNTLYLQMSRLKSEDTAMYYCARGRG--Y-------------- 101 usage_00050.pdb 57 NYADTVKGRFTISRDNPKNTLFLQMTSLRSEDTAIYYCTRGGT--GT------------- 101 usage_00057.pdb 58 YYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCASALEPLS-------------- 103 usage_00071.pdb 57 SYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARGRW--Y-------------- 100 usage_00072.pdb 57 SYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARGRW--Y-------------- 100 usage_00089.pdb 58 YYSDSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCTRGYS--S-------------- 101 usage_00113.pdb 57 YYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCASSYD--F-------------- 100 usage_00151.pdb 58 YYPDTLTGRFTISRDNAKNTLYLEMTSLRSEDTAMYYCASFNW--D-------------- 101 usage_00169.pdb 58 YYSDSVKGRFTISRDNAKNTLYLQMSSLKSEDTAMYYCTRDEG--NG------------- 102 usage_00170.pdb 58 DYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCSRSSD--AS------------- 102 usage_00201.pdb 56 WYASWAKGRFIISRAS-STTVDLKVTSPTTEDTATYFCARG-L--Y-------------- 97 usage_00202.pdb 56 WYASWAKGRFIISRAS-STTVDLKVTSPTTEDTATYFCARG-L--Y-------------- 97 usage_00204.pdb 58 NYTPSLKDKFIISRDNAKNTLYLQMSKVRSEDTALYYCARETG--T-------------- 101 usage_00205.pdb 58 NYTPSLKDKFIISRDNAKNTLYLQMSKVRSEDTALYYCARETG--T-------------- 101 usage_00206.pdb 58 NYTPSLKDKFIISRDNAKNTLYLQMSKVRSEDTALYYCARETG--T-------------- 101 usage_00224.pdb 58 NYNEKFKGRFTISSDKSKNTAYLQMNSLRAEDTAVYYCSRPTM--L-------------- 101 usage_00236.pdb 58 DYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARAGT--L-------------- 101 usage_00237.pdb 58 DYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARAGT--L-------------- 101 usage_00241.pdb 58 YYADSVKGRFTISRDNSKNTLYLQMNGLRAEDTAVYYCARDLR--T-------------- 101 usage_00257.pdb 58 YYADTVKGRFTISRDNPKNTLFLQMTSLRSEDTAMYYCARGDY--Y-------------- 101 usage_00258.pdb 58 YYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKDSQ--LR------------- 102 usage_00274.pdb 57 YYSDSVEGRFTTSRDNSKNTLYLQMNSLRAEDTAIYYCSRYRY--D-------------- 100 usage_00277.pdb 59 VYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAYRRI--GV------------- 103 usage_00278.pdb 54 VYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAYRRI--GV------------- 98 usage_00319.pdb 57 KYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTATYYCAREGH--N-------------- 100 usage_00320.pdb 57 KYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTATYYCAREGH--N-------------- 100 usage_00321.pdb 57 KYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTATYYCAREGH--N-------------- 100 usage_00322.pdb 57 KYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTATYYCAREGH--N-------------- 100 usage_00336.pdb 57 YYADSVKGRFTISRDNSMNTVYLQMNTLRPEDTAVYYCARDLG--GY------------- 101 usage_00340.pdb 58 YHSDSMWGRVTISRDNSKNTLYLQFSSLKVEDTAMFFCAREAG--GP------------- 102 usage_00341.pdb 58 YHSDSMWGRVTISRDNSKNTLYLQFSSLKVEDTAMFFCAREAG--GP------------- 102 usage_00343.pdb 57 RYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCSRWGG--D-------------- 100 usage_00353.pdb 58 YHSDSMWGRVTISRDNSKNTLYLQFSSLKVEDTAMFFCAREAG--GPIWHDDVKYDFNDG 115 usage_00355.pdb 58 SYPDSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKQDY--A-------------- 101 usage_00356.pdb 58 SYPDSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKQDY--A-------------- 101 usage_00357.pdb 58 YSLDSVKGRFTFFRDNARNTLYLQMSSLRSEDTAMYFCSRENY--G-------------- 101 usage_00376.pdb 58 NYMPSLKDKFIISRDNAKNSLYLQLSRLRSEDSALYYCVRLDF--DV------------- 102 usage_00386.pdb 56 FYATWAKGRFTISRDNSKNTVYLQMNSLRAEDTAVYYCARTVP--G-------------- 99 usage_00392.pdb 58 YYPDSVKGRFTISRDNARNTLYLQMNSLRSEDTALYYCARDYD--Y-------------- 101 usage_00394.pdb 57 YYADSVKGRFTISRDNSKNTLFLQMNSLRAEDTAVYYCATND------------------ 98 usage_00407.pdb 57 DYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARESR--VS------------- 101 usage_00434.pdb 57 FYADSVKGRFTISRDNSKNTLYFEMNSLRPEDTAVYYCVGGYS--NF------------- 101 usage_00452.pdb 57 DYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARGPF--S-------------- 100 usage_00467.pdb 58 FYADSVKGRFTISRDNSKNTLYFEMNSLRPEDTAVYYCVGGYS--NF------------- 102 usage_00491.pdb 58 YYGDSVKGRFSISRDNAKTTHYLQMDSLRSEDTATYYCAKTSR--V-------------- 101 usage_00509.pdb 57 EYNSNLKSRFTISRDTSKNTVYLQMNSLRAEDTAVYYCARDQG--LN------------- 101 usage_00530.pdb 57 AYAKWAKGRFTISRTS--TTVDLKITSPTTEDTATYFCARGYG--SM------------- 99 usage_00536.pdb 56 FYATWAKGRFTISRDNSKNTVYLQMNSLRAEDTAVYYCARTVP--G-------------- 99 usage_00545.pdb 58 KYADAVKGRFTVSRDNAKNLLFLQMNILKSEDTAMYYCARFDW--D-------------- 101 s EDt C usage_00010.pdb 102 YYDH---I-G---YSPG--PTWGQGTLVTVS 123 usage_00011.pdb 102 YYDH---I-G---YSPG--PTWGQGTLVTVS 123 usage_00012.pdb 102 YYDH---I-G---YSPG--PTWGQGTLVTVS 123 usage_00023.pdb 102 ---------V----W-F--AYWGQGTTVTVS 116 usage_00050.pdb 102 -------R-S--LYY-F--DYWGQGATLIVS 119 usage_00057.pdb 104 --------------E-P-LGFWGQGTLVTVS 118 usage_00071.pdb 101 ---------R---RA-L--DYWGQGTLVTVS 116 usage_00072.pdb 101 ---------R---RA-L--DYWGQGTLVTVS 116 usage_00089.pdb 102 ---------T--SYA-M--DYWGQGTLVTVS 118 usage_00113.pdb 101 ---------W--SNA-F--DIWGQGTMVTVS 117 usage_00151.pdb 102 ----------------V--AYWGQGTLVTVS 114 usage_00169.pdb 103 -------N-Y--VEA-M--DYWGQGTSVTVS 120 usage_00170.pdb 103 -------Y-S--YSA-M--DYWGQGTLVTVS 120 usage_00201.pdb 98 ---------N----D-Y--TVWGPGTLVTVS 112 usage_00202.pdb 98 ---------N----D-Y--TVWGPGTLVTVS 112 usage_00204.pdb 102 --------------R-F--DYWGQGTTLTV- 114 usage_00205.pdb 102 --------------R-F--DYWGQGTTLTV- 114 usage_00206.pdb 102 --------------R-F--DYWGQGTTLTV- 114 usage_00224.pdb 102 ---------P----W-F--AYWGQGTLVTVS 116 usage_00236.pdb 102 ----------------F--AYWGQGTLVTV- 113 usage_00237.pdb 102 ----------------F--AYWGQGTLVTV- 113 usage_00241.pdb 102 ---------G----P-F--DYWGQGTLVTVS 116 usage_00257.pdb 102 --------------G-SRGAYWGQGTLVTVS 117 usage_00258.pdb 103 SLLYFEWLSQ---GY-F--DYWGQGTLVTVS 127 usage_00274.pdb 101 ---------D----A-M--DYWGQGTLVTVS 115 usage_00277.pdb 104 ---------P--RRD-E-FDIWGQGTMVTVS 121 usage_00278.pdb 99 ---------P--RRD-E-FDIWGQGTMVTVS 116 usage_00319.pdb 101 ---------D---WY-F--DLWGRGTLVTVS 116 usage_00320.pdb 101 ---------D---WY-F--DLWGRGTLVTVS 116 usage_00321.pdb 101 ---------D---WY-F--DLWGRGTLVTVS 116 usage_00322.pdb 101 ---------D---WY-F--DLWGRGTLVTVS 116 usage_00336.pdb 102 F------I-R---GI-M--DVWGQGTLVTVS 119 usage_00340.pdb 103 YY-----N-Y---HY-M--DVWGKGTTVTVS 121 usage_00341.pdb 103 YY-----N-Y---HY-M--DVWGKGTTVTVS 121 usage_00343.pdb 101 ---------G--FYA-M--DYWGQGTLVTV- 116 usage_00353.pdb 116 YY-----N-Y---HY-M--DVWGKGTTVTVS 134 usage_00355.pdb 102 ----------------M--NYWGQGTLVTVS 114 usage_00356.pdb 102 ----------------M--NYWGQGTLVTVS 114 usage_00357.pdb 102 ---------S----S-F--TYWGQGTLVTVS 116 usage_00376.pdb 103 ---Y---NHY---YV-L--DYWG-------- 113 usage_00386.pdb 100 ---------YSTAPY-F--DLWGQGTLVTVS 118 usage_00392.pdb 102 --------------G-V--DYWGQGTSVTVS 115 usage_00394.pdb 99 -------------------DYWGQGTLVTVS 110 usage_00407.pdb 102 -------F-E---AA-M--DYWGQGTLVTVS 118 usage_00434.pdb 102 ---------Y---YY-YTMDVWGQGTTVTVS 119 usage_00452.pdb 101 ---------P---WV-M--DYWGQGTLVTVS 116 usage_00467.pdb 103 ---------Y---YY-YTMDVWGQGTTVTVS 120 usage_00491.pdb 102 --------------Y-F--DYWGQGVMVTVS 115 usage_00509.pdb 102 -------Y-G---SL-F--DYWGQGTLVTV- 117 usage_00530.pdb 100 D------G-Y---DR-L--NLWGQGTLVTVS 117 usage_00536.pdb 100 ---------YSTAPY-F--DLWGQGTLVTVS 118 usage_00545.pdb 102 ----------------K--NYWGQGTMVTVS 114 WG #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################