################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:38:27 2021 # Report_file: c_0868_10.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00005.pdb # 2: usage_00006.pdb # 3: usage_00041.pdb # 4: usage_00042.pdb # 5: usage_00043.pdb # 6: usage_00044.pdb # 7: usage_00081.pdb # 8: usage_00082.pdb # 9: usage_00083.pdb # 10: usage_00158.pdb # 11: usage_00296.pdb # # Length: 96 # Identity: 12/ 96 ( 12.5%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 20/ 96 ( 20.8%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 41/ 96 ( 42.7%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00005.pdb 1 SLATLAIHGGQSPDPSTGAVMPPIYATSTYAQSST-------------HNPTRFAYERCV 47 usage_00006.pdb 1 SLATLAIHG--------------------------------------THNPTRFAYERCV 22 usage_00041.pdb 1 SLATLAIHGGQSPDPSTGAVMPPIYATSTYAQ-------------SRTHNPTRFAYERCV 47 usage_00042.pdb 1 SLATLAIHGGQSPDPSTGAVMPPIYATSTYAQSS-P---------SRTHNPTRFAYERCV 50 usage_00043.pdb 1 SLATLAIHGGQSPDPSTGAVMPPIYATSTYAQSS-PGEH-QGFEYSRTHNPTRFAYERCV 58 usage_00044.pdb 1 SLATLAIHGGQSPDPSTGAVMPPIYATSTYAQSS-PGEH-QGFEYSRTHNPTRFAYERCV 58 usage_00081.pdb 1 RMQTKLIHGGISEDATTGAVSVPIYQTSTYRQDA-IGRH-KGYEYSRSGNPTRFALEELI 58 usage_00082.pdb 1 RMQTKLIHGGISEDATTGAVSVPIYQTSTYRQDA-IG----GYEYSRSGNPTRFALEELI 55 usage_00083.pdb 1 RMQTKLIHGGISEDATTGAVSVPIYQTSTYRQDA-IGRH-KGYEYSRSGNPTRFALEELI 58 usage_00158.pdb 1 GFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDS-AEQG---------GNPTTDALEKKL 50 usage_00296.pdb 1 GLATRAIHSGYRPDPATGAVNAPIYASSTFAQDG-VGGLRGGYEYARTGNPTRTALEAAL 59 T iH NPTr A E usage_00005.pdb 48 AALEGGTRAFAFASGMAATSTVMELLDAGSHVVAM- 82 usage_00006.pdb 23 AALEGGTRAFAFASGMAATSTVMELLDAGSHVVAM- 57 usage_00041.pdb 48 AALEGGTRAFAFASGMAATSTVMELLDAGSHVVAM- 82 usage_00042.pdb 51 AALEGGTRAFAFASGMAATSTVMELLDAGSHVVAM- 85 usage_00043.pdb 59 AALEGGTRAFAFASGMAATSTVMELLDAGSHVVAM- 93 usage_00044.pdb 59 AALEGGTRAFAFASGMAATSTVMELLDAGSHVVAM- 93 usage_00081.pdb 59 ADLEGGVKGFAFASGLAGIHAVFSLLQSGDHVLLG- 93 usage_00082.pdb 56 ADLEGGVKGFAFASGLAGIHAVFSLLQSGDHVLLG- 90 usage_00083.pdb 59 ADLEGGVKGFAFASGLAGIHAVFSLLQSGDHVLLG- 93 usage_00158.pdb 51 AVLERGEAGLATASGISAITTTLLTLCQQGDHIVSA 86 usage_00296.pdb 60 AAVEDAAFGRAFSSGMAAADCALRAMLRPGDHVV-- 93 A lE g AfaSG a l #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################