################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 02:01:01 2021 # Report_file: c_1290_2.html ################################################################################################ #==================================== # Aligned_structures: 18 # 1: usage_00002.pdb # 2: usage_00113.pdb # 3: usage_00135.pdb # 4: usage_00136.pdb # 5: usage_00149.pdb # 6: usage_00150.pdb # 7: usage_00151.pdb # 8: usage_00241.pdb # 9: usage_00242.pdb # 10: usage_00296.pdb # 11: usage_00343.pdb # 12: usage_00344.pdb # 13: usage_00406.pdb # 14: usage_00407.pdb # 15: usage_00411.pdb # 16: usage_00534.pdb # 17: usage_00546.pdb # 18: usage_00570.pdb # # Length: 86 # Identity: 17/ 86 ( 19.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 24/ 86 ( 27.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 33/ 86 ( 38.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00002.pdb 1 -PSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQ-N 58 usage_00113.pdb 1 -RSVDWREK-GYVTPVKNQGQCGS-WAFSATGALEGQMFRKTGRLISLSEQNLVDCSG-P 56 usage_00135.pdb 1 -ETVDWRSK-GAVNPIRNQGQCGS-WAFSAVAAVESINKIVTGQLLSLSEQQLLDCAQ-- 55 usage_00136.pdb 1 -ETVDWRSK-GAVDPIRDQGKCGS-WVFSVTVVVEGIVKIVTDTLPSLSEQELLDCAP-- 55 usage_00149.pdb 1 -ASVDWRKK-GAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDT-D 57 usage_00150.pdb 1 PASVDWRKK-GAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDT-D 58 usage_00151.pdb 1 -DSVDWREK-GCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 58 usage_00241.pdb 1 -DTVDWREK-GCVTEVKYQGSCGACWAFSAVGALEGQLKLKTGKLISLSAQNLVDCS--- 55 usage_00242.pdb 1 -DTVDWREK-GCVTEVKYQGSCGACWAFSAVGALEGQLKLKTGKLISLSAQNLVDC---- 54 usage_00296.pdb 1 -RSVDWREK-GYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSG-P 57 usage_00343.pdb 1 -DSVDWREK-GCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 58 usage_00344.pdb 1 -DSVDWREK-GCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 58 usage_00406.pdb 1 -DTVDWREK-GCVTEVKYQGSCGACWAFSAVGALEGQLKLKTGKLISLSAQNLVDCSN-E 57 usage_00407.pdb 1 -DTVDWREK-GCVTEVKYQGSCGACWAFSAVGALEGQLKLKTGKLISLSAQNLVDC---- 54 usage_00411.pdb 1 -DTVDWREK-GCVTEVKYQGSCGACWAFSAVGALEGQLKLKTGKLISLSAQNLVDC---- 54 usage_00534.pdb 1 -DSVDWREK-GCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEK 58 usage_00546.pdb 1 -DSIDWREN-GAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTT-- 56 usage_00570.pdb 1 -SFVDWRSK-GAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDT-- 56 DWR k g V Qg CG W FS a E T l sLs Q L DC usage_00002.pdb 59 --F--NNHGCQGGLPSQAFEYIRY-- 78 usage_00113.pdb 57 --Q--GNEGCNGGLMDYAFQYVQDNG 78 usage_00135.pdb 56 ---SYKNLGCQGGWVNKAFEYIIQNR 78 usage_00136.pdb 56 ---SYKDLGCKGGWMDKAYDYIIKDR 78 usage_00149.pdb 58 -----QNQGCNGGLMDYAFEFIKQ-- 76 usage_00150.pdb 59 -----QNQGCNGGLMDYAFEFIKQRG 79 usage_00151.pdb 59 --Y--GNKGCNGGFMTTAFQYIIDNK 80 usage_00241.pdb -------------------------- usage_00242.pdb -------------------------- usage_00296.pdb 58 --Q--GNEGCNGGLMDYAFQYVQDNG 79 usage_00343.pdb 59 --Y--GNKGCNGGFMTTAFQYIIDNK 80 usage_00344.pdb 59 --Y--GNKGCNGGFMTTAFQYIIDNK 80 usage_00406.pdb 58 EKY--GNKGCGGGYMTEAFQYIIDNG 81 usage_00407.pdb -------------------------- usage_00411.pdb -------------------------- usage_00534.pdb 59 --Y--GNKGCNGGFMTTAFQYIIDNK 80 usage_00546.pdb 57 --A---NHGCRGGWMNPAFQFIVNNG 77 usage_00570.pdb 57 --A---SHGCNGGWMNNAFQYIITNG 77 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################