################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:43:17 2021 # Report_file: c_0119_9.html ################################################################################################ #==================================== # Aligned_structures: 12 # 1: usage_00104.pdb # 2: usage_00152.pdb # 3: usage_00154.pdb # 4: usage_00155.pdb # 5: usage_00156.pdb # 6: usage_00160.pdb # 7: usage_00161.pdb # 8: usage_00177.pdb # 9: usage_00214.pdb # 10: usage_00259.pdb # 11: usage_00263.pdb # 12: usage_00285.pdb # # Length: 115 # Identity: 45/115 ( 39.1%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 70/115 ( 60.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 7/115 ( 6.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00104.pdb 1 -IQLTQSPLSLPVSLGDQASISCRSSQSLVHS-NGNTYLHWYLQKPGQSPKLLIYKVSNR 58 usage_00152.pdb 1 -IVMSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKVLIYWASTR 59 usage_00154.pdb 1 -LVMTQTPLSLPVSLGDQASISCRSSQSLVHS-NGNTYLHWYLQKPGQSPKFLIYKVSNR 58 usage_00155.pdb 1 ELVMTQTPLSLPVSLGDQASISCRSSQSLVHS-NGNTYLHWYLQKPGQSPKFLIYKVSNR 59 usage_00156.pdb 1 -LVMTQTPLSLPVSLGDQASISCRSSQSLVHS-NGNTYLHWYLQKPGQSPKFLIYKVSNR 58 usage_00160.pdb 1 -IVMTQSPLSLPVTLGQPASISCSSAQSLVHS-DGDSYLTWFHQRPGQSPRRLIYKVSIR 58 usage_00161.pdb 1 -IVMTQSPLTLSVTIGQPASISCKSSQSLLYS-NGKTYLNWLLQRPGQSPKRLIHLVSKL 58 usage_00177.pdb 1 DVVMTQTPLTLSITIGQPVSISCKSSQSLFAS-DGRTYLNWLLQRPGQSPERLIYLVSNL 59 usage_00214.pdb 1 -LVMTQTPLSLPVSLGDQASISCRSSQSLVHS-NGNTYLHWYLQKPGQSPKFLIYKVSNR 58 usage_00259.pdb 1 --VMTQSPLSLPVTPGEPASISCKSSQSLLDS-DGKTYLNWLLQKPGQSPQRLIYLVSKL 57 usage_00263.pdb 1 -VVMTQTPLTLSVTIGQPASISCKSSQSLLDS-DGKTYLNWLLQRPGQSPKRLIYLVSKL 58 usage_00285.pdb 1 --VMTQTPLSLSVTIGQPASISCKSSQSLLDS-DGKTYLNWLLQRPGQSPKRLIYLVSKL 57 vmtQ Pl L v G siSC SsQSL S g YL W Q PGQSP LIy vS usage_00104.pdb 59 FSGVPDRFSGSGSGTDFTLKISSVEAEDLGVYFCSQSTHVPTFGGGTKLEI---- 109 usage_00152.pdb 60 ESGVPDRFTGRGSGTDFTLTISSVQAEDQAVYYCKQAYIPPLTFGAGTKLELKRA 114 usage_00154.pdb 59 FSGVPDRFSGSGSGTDFILKISRVEAEDLGVYFCFQSTHFFPTFGGGTKLEIKRT 113 usage_00155.pdb 60 FSGVPDRFSGSGSGTDFILKISRVEAEDLGVYFCFQSTHFFPTFGGGTKLEIKRT 114 usage_00156.pdb 59 FSGVPDRFSGSGSGTDFILKISRVEAEDLGVYFCFQSTHFFPTFGGGTKLEIKRT 113 usage_00160.pdb 59 DAGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQATHWPYTFGQGTKLEI--- 110 usage_00161.pdb 59 DSGVPDRITGSGSGTDFTLKISRVEAADLGVYYCVQGTHFPYTFGGGTKLEI--- 110 usage_00177.pdb 60 DSGVLDRFTGSGSGTDFTLKISRVEAEDLGVYYCWQGTHFPQTFGGGTKLEI--- 111 usage_00214.pdb 59 FSGVPDRFSGSGSGTDFILKISRVEAEDLGVYFCSQSTHFFPTFGGGTKLEIKRT 113 usage_00259.pdb 58 DSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCWQGTHFPRTFGQGTKVEIKRT 112 usage_00263.pdb 59 DSGVPDRFTGSGSGTDFTLKISRVEAEDLGVYYCWQGSHFPYTFGGGTKLEI--- 110 usage_00285.pdb 58 ASGVPDRFTGSGSGTDFTLKISRVEAEDLGVYYCWQGTHFPWTFGGYTKLEI--- 109 sGVpDRf GsGSGTDF LkIS VeAeD gVY C Q h tfG tk e #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################