################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 02:20:57 2021 # Report_file: c_0171_8.html ################################################################################################ #==================================== # Aligned_structures: 20 # 1: usage_00040.pdb # 2: usage_00052.pdb # 3: usage_00058.pdb # 4: usage_00061.pdb # 5: usage_00079.pdb # 6: usage_00080.pdb # 7: usage_00081.pdb # 8: usage_00082.pdb # 9: usage_00083.pdb # 10: usage_00084.pdb # 11: usage_00085.pdb # 12: usage_00086.pdb # 13: usage_00087.pdb # 14: usage_00088.pdb # 15: usage_00126.pdb # 16: usage_00236.pdb # 17: usage_00237.pdb # 18: usage_00238.pdb # 19: usage_00239.pdb # 20: usage_00255.pdb # # Length: 177 # Identity: 56/177 ( 31.6%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 83/177 ( 46.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 30/177 ( 16.9%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00040.pdb 1 DYLFKLLLIGDSGVGKTCVLFRFSE-DAFNSTFIS-TIGIDFKIRTIELDGKRIKLQIWD 58 usage_00052.pdb 1 -SIMKILLIGDSGVGKSCLLVRFVE--DKFNPSFITTIGIDFKIKTVDINGKKVKLQLWD 57 usage_00058.pdb 1 -SIMKILLIGDVGVGKSCLLVRFVE-DKFNPG-------IDFKIKTVDINGKKVKLQLWD 51 usage_00061.pdb 1 -SIMKILLIGDVGVGKSCLLVRFVE--DKFNPSFITTIGIDFKIKTVDIN---VKLQLWD 54 usage_00079.pdb 1 DYLFKLLLIGDSGVGKTCVLFRFSE-DAFNSTFIS-TIGIDFKIRTIELDGKRIKLQIWD 58 usage_00080.pdb 1 DYLFKLLLIGDSGVGKTCVLFRFSE-DAFNSTFIS-TIGIDFKIRTIELDGKRIKLQIWD 58 usage_00081.pdb 1 DYLFKLLLIGDSGVGKTCVLFRFSE-DAFNSTFIS-TIGIDFKIRTIELDGKRIKLQIWD 58 usage_00082.pdb 1 DYLFKLLLIGDSGVGKTCVLFRFSE-DAFNSTFIS-TIGIDFKIRTIELDGKRIKLQIWD 58 usage_00083.pdb 1 DYLFKLLLIGDSGVGKTCVLFRFSE-DAFNSTFIS-TIGIDFKIRTIELDGKRIKLQIWD 58 usage_00084.pdb 1 DYLFKLLLIGDSGVGKTCVLFRFSE--DAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 58 usage_00085.pdb 1 DYLFKLLLIGDSGVGKTCVLFRFSE--DAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 58 usage_00086.pdb 1 DYLFKLLLIGDSGVGKTCVLFRFSE--DAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 58 usage_00087.pdb 1 DYLFKLLLIGDSGVGKTCVLFRFSE--DAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 58 usage_00088.pdb 1 DYLFKLLLIGDSGVGKTCVLFRFSE--DAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 58 usage_00126.pdb 1 ---LQVIIIGSRGVGKTSLMERFTDS-T---------VGVDFKIKTVELRGKKIRLQIWD 47 usage_00236.pdb 1 -YLFKLLLIGDSGVGKTCVLFRFSE-DAFNSTFIS-TIGIDFKIRTIELDGKRIKLQIWD 57 usage_00237.pdb 1 DYLFKLLLIGDSGVGKTCVLFRFSE-DAFNSTFIS-TIGIDFKIRTIELDGKRIKLQIWD 58 usage_00238.pdb 1 -YLFKLLLIGDSGVGKTCVLFRFSE-DAFNSTFIS-TIGIDFKIRTIELDGKRIKLQIWD 57 usage_00239.pdb 1 -YLFKLLLIGDSGVGKTCVLFRFSE-DAFNSTFIS-TIGIDFKIRTIELDGKRIKLQIWD 57 usage_00255.pdb 1 DYLFKLLLIGDSGVGKTCVLFRFSE-DAFNSTFIS-TIGIDFKIRTIELDGKRIKLQIWD 58 k llIGd GVGK c l RF e iDFKI T kLQ WD usage_00040.pdb 59 TAGQERFRTIT--TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 116 usage_00052.pdb 58 TAGQERFRTIT--TAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGN 115 usage_00058.pdb 52 TAGQ--ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGN 109 usage_00061.pdb 55 TAGQERFRTIT--TAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGN 112 usage_00079.pdb 59 TAGQERFRTIT--TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 116 usage_00080.pdb 59 TAGQERFRTIT--TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 116 usage_00081.pdb 59 TAGQERFRTIT--TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 116 usage_00082.pdb 59 TAGQERFRTIT--TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 116 usage_00083.pdb 59 TAGQERFRTIT--TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 116 usage_00084.pdb 59 TAGQERFRTIT--TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 116 usage_00085.pdb 59 TAGQERFRTIT--TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 116 usage_00086.pdb 59 TAGQERFRTIT--TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 116 usage_00087.pdb 59 TAGQERFRTIT--TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 116 usage_00088.pdb 59 TAGQERFRTIT--TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 116 usage_00126.pdb 48 TAGQERFNSIT--SAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGN 105 usage_00236.pdb 58 TAGQERFRTIT--TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 115 usage_00237.pdb 59 TAGQERFRTIT--TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 116 usage_00238.pdb 58 TAGQERFRTIT--TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 115 usage_00239.pdb 58 TAGQERFRTIT--TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 115 usage_00255.pdb 59 TAGQERFRTIT--TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 116 TAGQ fr iT tAYYRgAmGI LVYD T e F ni W ehA GN usage_00040.pdb 117 KCDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKAKM---- 168 usage_00052.pdb 116 KSDME-TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQEKIDS-- 168 usage_00058.pdb 110 KSDM-ETRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQEKI---- 160 usage_00061.pdb 113 KSDME-TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQEKID--- 164 usage_00079.pdb 117 KCDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKAKMDKK- 171 usage_00080.pdb 117 KCDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKAKM---- 168 usage_00081.pdb 117 KCDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKAKMDKK- 171 usage_00082.pdb 117 KCDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKAKMDK-- 170 usage_00083.pdb 117 KCDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKAKMDKK- 171 usage_00084.pdb 117 KCDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKAKMDKKL 172 usage_00085.pdb 117 KCDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKAKMDKKL 172 usage_00086.pdb 117 KCDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKAKMDKKL 172 usage_00087.pdb 117 KCDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKAKMDKKL 172 usage_00088.pdb 117 KCDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKAKMDKK- 171 usage_00126.pdb 106 KLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM---- 158 usage_00236.pdb 116 KCDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKAKMDKK- 170 usage_00237.pdb 117 KCDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKAKMDKK- 171 usage_00238.pdb 116 KCDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKAKMDK-- 169 usage_00239.pdb 116 KCDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKAKM---- 167 usage_00255.pdb 117 KCDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKAKMDKK- 171 K D R v GE lA g i F E SAK NV FftLa I K #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################