################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:01:39 2021 # Report_file: c_1407_148.html ################################################################################################ #==================================== # Aligned_structures: 5 # 1: usage_00116.pdb # 2: usage_00708.pdb # 3: usage_00709.pdb # 4: usage_00789.pdb # 5: usage_00919.pdb # # Length: 123 # Identity: 0/123 ( 0.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 2/123 ( 1.6%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 86/123 ( 69.9%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00116.pdb 1 -----------SVEGLEQLRA---KYG----------------------------D-LQ- 16 usage_00708.pdb 1 -EEEV--AKLRKFANCIGLLFQVVDDILDVT------------------TTYPKLIGVE- 38 usage_00709.pdb 1 KEEEV--AKLRKFANCIGLLFQVVDDILDVTKSSKELGKTAGKDLVADKTTYPKLIGVE- 57 usage_00789.pdb 1 --------PLTAYATALGLAFQIADDI-L--------------------ATFVSLLGLA- 30 usage_00919.pdb 1 -----GSEGLVAGQVVDVCSE---GMA----------------------------E-VGL 23 l usage_00116.pdb 17 ILNKLEKVAVQQ-TQ-QAGVDKLDSFE--------RQLDELAEQPPDQF----T------ 56 usage_00708.pdb 39 KSKEFADRLNRE-AQ-EQ----------------------LLHFHPHR----AA------ 64 usage_00709.pdb 58 KSKEFADRLNRE-AQ-EQ----------------------LLHFHPHR----AA------ 83 usage_00789.pdb 31 GAKSRAADLVAE-AE-AA----------------------LAPYGEAA----ST------ 56 usage_00919.pdb 24 DHLEFIHHHKTAALLQGSVVLGAILGGGKEEEVAKLRKFANCIG-----LLFQVVDDILD 78 l usage_00116.pdb --- usage_00708.pdb --- usage_00709.pdb --- usage_00789.pdb --- usage_00919.pdb 79 VTK 81 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################