################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:08:44 2021 # Report_file: c_0328_4.html ################################################################################################ #==================================== # Aligned_structures: 14 # 1: usage_00004.pdb # 2: usage_00005.pdb # 3: usage_00006.pdb # 4: usage_00054.pdb # 5: usage_00131.pdb # 6: usage_00132.pdb # 7: usage_00155.pdb # 8: usage_00182.pdb # 9: usage_00262.pdb # 10: usage_00307.pdb # 11: usage_00308.pdb # 12: usage_00374.pdb # 13: usage_00375.pdb # 14: usage_00376.pdb # # Length: 235 # Identity: 136/235 ( 57.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 180/235 ( 76.6%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 55/235 ( 23.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00004.pdb 1 DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 60 usage_00005.pdb 1 -KNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 59 usage_00006.pdb 1 -KNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 59 usage_00054.pdb 1 -KNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 59 usage_00131.pdb 1 -KNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 59 usage_00132.pdb 1 -KNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 59 usage_00155.pdb 1 -KNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 59 usage_00182.pdb 1 -KNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 59 usage_00262.pdb 1 -KNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 59 usage_00307.pdb 1 --EQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRV 58 usage_00308.pdb 1 -KNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 59 usage_00374.pdb 1 --NELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 58 usage_00375.pdb 1 -KNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 59 usage_00376.pdb 1 -KNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 59 neLVQKAkLAEQAERYDDMAAcMKsVTEqgaeLSNEERNLLSVAYKNVVGARRSSWRV usage_00004.pdb 61 VSSIEQK------EKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNA----AESKVF 110 usage_00005.pdb 60 VSSIEQK------EKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNA----AESKVF 109 usage_00006.pdb 60 VSSIEQK------EKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNA----AESKVF 109 usage_00054.pdb 60 VSSIEQKTE--GAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 115 usage_00131.pdb 60 VSSIEQK------EKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 111 usage_00132.pdb 60 VSSIEQKTE--GAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 115 usage_00155.pdb 60 VSSIEQKT---E-EKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 113 usage_00182.pdb 60 VSSIEQKTE--GAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 115 usage_00262.pdb 60 VSSIEQKTE--GAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 115 usage_00307.pdb 59 ISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVF 118 usage_00308.pdb 60 VSSIEQK------EKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 111 usage_00374.pdb 59 VSSIEQKT-----EKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 111 usage_00375.pdb 60 VSSIEQKTE--GAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 115 usage_00376.pdb 60 VSSIEQKTE--GAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 115 vSSIEQK EKKqqMaReYREKIEtELrdiCnDVLSLLekfLIpNa aESKVF usage_00004.pdb 111 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEM-----IRLGLALNFSVF 165 usage_00005.pdb 110 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEM-----IRLGLALNFSVF 164 usage_00006.pdb 110 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEM-----IRLGLALNFSVF 164 usage_00054.pdb 116 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 175 usage_00131.pdb 112 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 171 usage_00132.pdb 116 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 175 usage_00155.pdb 114 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 173 usage_00182.pdb 116 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 175 usage_00262.pdb 116 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 175 usage_00307.pdb 119 YLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVF 178 usage_00308.pdb 112 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 171 usage_00374.pdb 112 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 171 usage_00375.pdb 116 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 175 usage_00376.pdb 116 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 175 YLKMKGDYYRYLAEVAaGddkkgiVdqSqqAYqEAfEISKkeM IRLGLALNfSVF usage_00004.pdb 166 YY--------ACSLAKTAFDEAIAEL--------------LIMQLLRDNLTLW-- 196 usage_00005.pdb 165 YY--------ACSLAKTAFDEAIAEL--------------LIMQLLRDNLTLW-- 195 usage_00006.pdb 165 YY--------ACSLAKTAFDEAIAEL--------------LIMQLLRDNLTLW-- 195 usage_00054.pdb 176 YYEILNSPEKACSLAKTAFDEAIAEL--DTLSEESYKDSTLIMQLLRDNLTLWT- 227 usage_00131.pdb 172 YYEILNSPEKACSLAKTAFDEAIAEL--DTLSEESYKDSTLIMQLLRDNLTLWTS 224 usage_00132.pdb 176 YYEILNSPEKACSLAKTAFDEAIAEL--DTLSEESYKDSTLIMQLLRDNLTLWTS 228 usage_00155.pdb 174 YYEILNSPEKACSLAKTAFDEAIAEL--DTLSEESYKDSTLIMQLLRDNLTLWT- 225 usage_00182.pdb 176 YYEILNSPEKACSLAKTAFDEAIAEL--DTLSEESYKDSTLIMQLLRDNLTLW-- 226 usage_00262.pdb 176 YYEILNSPEKACSLAKTAFDEAIAEL--DTLSEESYKDSTLIMQLLRDNLTLWT- 227 usage_00307.pdb 179 YYEIQNAPEQACHLAKTAFDDAIA-EYKDST---------LIMQLLRDNLTLWT- 222 usage_00308.pdb 172 YYEILNSPEKACSLAKTAFDEAIAEL--DTLSEESYKDSTLIMQLLRDNLTLWT- 223 usage_00374.pdb 172 YYEILNSPEKACSLAKTAFDEAIAEL--DTLSEESYKDSTLIMQLLRDNLTLWT- 223 usage_00375.pdb 176 YYEILNSPEKACSLAKTAFDEAIAEL--DTLSEESY------------------- 209 usage_00376.pdb 176 YYEILNSPEKACSLAKTAFDEAIAEL--DTLSEESYKDSTLIMQLLRDNLTLWT- 227 YY ACsLAKTAFDeAIA l #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################