################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:24:57 2021 # Report_file: c_0717_24.html ################################################################################################ #==================================== # Aligned_structures: 10 # 1: usage_00038.pdb # 2: usage_00039.pdb # 3: usage_00053.pdb # 4: usage_00332.pdb # 5: usage_00333.pdb # 6: usage_00335.pdb # 7: usage_00336.pdb # 8: usage_00358.pdb # 9: usage_00359.pdb # 10: usage_00416.pdb # # Length: 87 # Identity: 5/ 87 ( 5.7%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 32/ 87 ( 36.8%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 33/ 87 ( 37.9%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00038.pdb 1 MVTVLVVNSGSSSLKYAVVRPASGEFLADGIIEEIGSG--AVP--------DHDAALRAA 50 usage_00039.pdb 1 -VTVLVVNSGSSSLKYAVVRPASGEFLADGIIEEIGSG--AVP--------DHDAALRAA 49 usage_00053.pdb 1 -RRVLVINSGSSSLKFQLVDPESGVAASTGIVERIGES--PVP--------DHDAALRRA 49 usage_00332.pdb 1 ARRVLVINSGSSSLKFQLVDPESGVAASTGIVERIESS--PVP--------DHDAALRRA 50 usage_00333.pdb 1 -RRVLVINSGSSSLKFQLVDPESGVAASTGIVERIGEESSPVP--------DHDAALRRA 51 usage_00335.pdb 1 NRVVLVLNSGSSSLKFQLVEPDSGMSRATGNIERI-------P--------DHDAALRRV 45 usage_00336.pdb 1 -RVVLVLNSGSSSLKFQLVEPDSGMSRATGNIERIG-S--SVP--------DHDAALRRV 48 usage_00358.pdb 1 -RRVLVINSGSSSLKFQLVDPEFGVAASTGIVERIGEESSPVP--------DHDAALRRA 51 usage_00359.pdb 1 ARRVLVINSGSSSLKFQLVDPEFGVAASTGIVERIGES--PVP--------DHDAALRRA 50 usage_00416.pdb 1 -RYLIGVDGGGTGTRIRLHASDG-TPLA-AEGGASA-LS----QGIAKSWQAVLSTLEAA 52 vlv nsGssslk v p g e i dhdaaLr usage_00038.pdb 51 FDELAAAGLHL-E-DLDLKAVGHRMV- 74 usage_00039.pdb 50 FDELAAAGLHL-E-DLDLKAVGHRMVH 74 usage_00053.pdb 50 FDMLAGDGVDL-N-TAGLVAVGHRVV- 73 usage_00332.pdb 51 FDMLAGDGVDL-N-TAGLVAVGHRVV- 74 usage_00333.pdb 52 FDMLAGDGVDL-N-TAGLVAVGHRVV- 75 usage_00335.pdb 46 FEILAEDDIDL-Q-SCGLVAVGHRVV- 69 usage_00336.pdb 49 FEILAEDDI-------GLVAVGHRVV- 67 usage_00358.pdb 52 FDMLAGDGVDL-N-TAGLVAVGHRVV- 75 usage_00359.pdb 51 FDMLAGDGVDL-N-TAGLVAVGHRVV- 74 usage_00416.pdb 53 FQQAG---LPAAPAS--ACAIGLG--- 71 F la l AvGhr #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################