################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:14:36 2021 # Report_file: c_0063_1.html ################################################################################################ #==================================== # Aligned_structures: 10 # 1: usage_00001.pdb # 2: usage_00002.pdb # 3: usage_00003.pdb # 4: usage_00004.pdb # 5: usage_00007.pdb # 6: usage_00008.pdb # 7: usage_00009.pdb # 8: usage_00010.pdb # 9: usage_00011.pdb # 10: usage_00012.pdb # # Length: 181 # Identity: 6/181 ( 3.3%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 27/181 ( 14.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 36/181 ( 19.9%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 ---------HYEPFGIYPGTKKSLDEISEGDKIAVPNDTTNEARALLLLQDNGIITLKDG 51 usage_00002.pdb 1 ------STTVLAPLGIYSDKIKDVKKVKDGAKVVIPNDVSNQARALKLLEAAGLIKLKKD 54 usage_00003.pdb 1 ------GNTFVYPIAGYSKKIKSLDELQDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDG 54 usage_00004.pdb 1 ------EGIHLEPLGVFSNKHKSLDELPDGGTIGIISDTANQSRALELLATQGLVSIPEG 54 usage_00007.pdb 1 -DFVNAGAIHLEPVGLYSKKYKSLQEIPDGSTIYVSSSVSDWPRVLTILEDAGLITLKEG 59 usage_00008.pdb 1 -DFVNAGAIHLEPVGLYSKKYKSLQEIPDGSTIYVSSSVSDWPRVLTILEDAGLITLKEG 59 usage_00009.pdb 1 -DFVNAGAIHLEPVGLYSKKYKSLQEIPDGSTIYVSSSVSDWPRVLTILEDAGLITLKEG 59 usage_00010.pdb 1 -DFVNAGAIHLEPVGLYSKKYKSLQEIPDGSTIYVSSSVSDWPRVLTILEDAGLITLKEG 59 usage_00011.pdb 1 ADLVAVQPIYYFAGGFYSKEYQDAKDLPENAKVGIPSDPTNEGRALAILNANGVIKLKEG 60 usage_00012.pdb 1 -KLVNAGAVHLEPFGIYSKTYKSLKDLPDGATIILTNNVAEQGR-LA-LENAGLITLDSK 57 p g ys k g R L L G i l usage_00001.pdb 52 AG-LNATVNDIEENPYNVEIVELEA-AQVARVTGE--TAYVVLNGNYALEAGYSVAKDAL 107 usage_00002.pdb 55 FG-LAGTVKDITSNPKHLKITAVDA-QQTARALSD--VDIAVINNGVATKAGKDPKNDPI 110 usage_00003.pdb 55 VG-LLPTVLDVVENPKNLKIVELEA-PQLPRSLDDAQIALAVINTTYASQIGLTPAKDGI 112 usage_00004.pdb 55 ----DVNINT-VTKLKNFDFREVEG-PQLVRSLDD--FDYAVINGNFAQEGGKTISGDAL 106 usage_00007.pdb 60 VDRTTATFDDIDKNTKKLKFNHESDPAI-TTLYDNEEGAAVLINSNFAVDQGLNPKKDAI 118 usage_00008.pdb 60 VDRTTATFDDIDKNTKKLKFNHESDPAI-TTLYDNEEGAAVLINSNFAVDQGLNPKKDAI 118 usage_00009.pdb 60 VDRTTATFDDIDKNTKKLKFNHESDPAI-TTLYDNEEGAAVLINSNFAVDQGLNPKKDAI 118 usage_00010.pdb 60 VDRTTATFDDIDKNTKKLKFNHESDPAI-TTLYDNEEGAAVLINSNFAVDQGLNPKKDAI 118 usage_00011.pdb 61 VG-FNGTVADVVENPKNITFESIDL-LNLAKAYDEKDI-AVFCYPAYLEPAGLTTK-DAI 116 usage_00012.pdb 58 VETVDATLKDIKKNPKNLEFKKVAP-ELTAKAYENKEGDAVFINVNYAIQNKLNPKKDAI 116 t d n k n a g D usage_00001.pdb 108 AYEKSDSEAAKTYVNIIAVKEGNEK-EEKIQALVKALKSDEIKEYIEKTYDGAV-IP--- 162 usage_00002.pdb 111 FLEKSNSDAVKPYINIVAVNDKDLD-NKTYAKIVELYHSKEAQKALQEDVKDGE-KPVNL 168 usage_00003.pdb 113 FVEDK----ESPYVNLIVTREDNKD-AENVKKFVQAYQSDEVYEAANKVFNGGA-VKGW- 165 usage_00004.pdb 107 VVESPVD--N-PAVNVLVWKGDS-KKVDAIAKLEKLLHSDEVKQYIEKTWSDGSVIPAF- 161 usage_00007.pdb 119 ALEKE----SSPYANIIAVRKEDEN-NENVKKLVKVLRSKEVQDWITKKWNGAI-VPVN- 171 usage_00008.pdb 119 ALEKE----SSPYANIIAVRKEDEN-NENVKKLVKVLRSKEVQDWITKKWNGAI-VPVN- 171 usage_00009.pdb 119 ALEKE----SSPYANIIAVRKEDEN-NENVKKLVKVLRSKEVQDWITKKWNGAI-VPV-- 170 usage_00010.pdb 119 ALEKE----SSPYANIIAVRKEDEN-NENVKKLVKVLRSKEVQDWITKKWNGAI-VPV-- 170 usage_00011.pdb 117 LLEDKE--ASKHYALQVVTRKGEKD-SEKIKVLKEA-TTKEVAEYIKKNSKGAN-IPAF- 170 usage_00012.pdb 117 EVESTK---NNPYANIIAVRKGEED-SAKIKAL-EVLHSKKIKDFIEKKYDGAV-LPVS- 169 E y n s e k p usage_00001.pdb - usage_00002.pdb 169 S 169 usage_00003.pdb - usage_00004.pdb - usage_00007.pdb - usage_00008.pdb - usage_00009.pdb - usage_00010.pdb - usage_00011.pdb - usage_00012.pdb - #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################