################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:38:06 2021 # Report_file: c_0785_77.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00120.pdb # 2: usage_00139.pdb # 3: usage_00276.pdb # 4: usage_00277.pdb # 5: usage_00278.pdb # 6: usage_00279.pdb # 7: usage_00342.pdb # 8: usage_00489.pdb # 9: usage_00490.pdb # 10: usage_00757.pdb # 11: usage_00902.pdb # # Length: 86 # Identity: 24/ 86 ( 27.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 39/ 86 ( 45.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 23/ 86 ( 26.7%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00120.pdb 1 --LPIFSGSGLPANEIAAQIARQATVR--------PDLSGEGEKEEPFAVVFAAMGITQR 50 usage_00139.pdb 1 --LPIFSASGLPHNEIALQIARQASVP--------G-S------ESAFAVVFAAMGITNE 43 usage_00276.pdb 1 --LPVFSGSGLPHKELAAQIARQATVL--------D-S------SDDFAVVFAAIGITFE 43 usage_00277.pdb 1 --LPVFSGSGLPHKELAAQIARQATVL--------D-S------SDDFAVVFAAIGITFE 43 usage_00278.pdb 1 --LPVFSGSGLPHKELAAQIARQATVL--------D-S------SDDFAVVFAAIGITFE 43 usage_00279.pdb 1 --LPVFSGSGLPHKELAAQIARQATVL--------D-S------SDDFAVVFAAIGITFE 43 usage_00342.pdb 1 QKIPIFSASGLPHNEIAAQICRQAGLVRPTKDVHDG-H------EENFSIVFAAMGVNLE 53 usage_00489.pdb 1 --LPIFSASGLPHNEIALQIARQASVP--------G-S------ESAFAVVFAAMGITNE 43 usage_00490.pdb 1 --LPIFSASGLPHNEIALQIARQASVP--------G-S------ESAFAVVFAAMGITNE 43 usage_00757.pdb 1 --LPVFSGSGLPHKELAAQIARQATVL--------D-S------SDDFAVVFAAIGITFE 43 usage_00902.pdb 1 --LPVFSGSGLPHKELAAQIARQATVL--------D-S------SDDFAVVFAAIGITFE 43 lP FS SGLPh E A QIaRQA v FavVFAA Git e usage_00120.pdb 51 ELSYFIQEFERTGALSRSVLF-LNK- 74 usage_00139.pdb 44 EAQYFMSDFEKTGALERAVVF-LNL- 67 usage_00276.pdb 44 EAEFF-EDFRQTGAIDRSVFNL---- 64 usage_00277.pdb 44 EAEFF-EDFRQTGAIDRSVFNL---- 64 usage_00278.pdb 44 EAEFF-EDFRQTGAIDRSVFNL---- 64 usage_00279.pdb 44 EAEFF-EDFRQTGAIDRSVFNL---- 64 usage_00342.pdb 54 TARFFKQDFEENGSLERTSLF-LNL- 77 usage_00489.pdb 44 EAQYFMSDFEKTGALERAVVF-LNL- 67 usage_00490.pdb 44 EAQYFMSDFEKTGALERAVVF-LNL- 67 usage_00757.pdb 44 EAEFFMEDFRQTGAIDRSVMF-MNL- 67 usage_00902.pdb 44 EAEFFMEDFRQTGAIDRSVMF-MNLA 68 ea F dF tGa R v #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################