################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:49:46 2021 # Report_file: c_0447_10.html ################################################################################################ #==================================== # Aligned_structures: 12 # 1: usage_00027.pdb # 2: usage_00028.pdb # 3: usage_00121.pdb # 4: usage_00135.pdb # 5: usage_00154.pdb # 6: usage_00175.pdb # 7: usage_00176.pdb # 8: usage_00183.pdb # 9: usage_00184.pdb # 10: usage_00185.pdb # 11: usage_00228.pdb # 12: usage_00236.pdb # # Length: 118 # Identity: 12/118 ( 10.2%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 36/118 ( 30.5%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 55/118 ( 46.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00027.pdb 1 DYLFKVVLIGDSGVGKSNLLSRFTRN---------EFNLESKSTIGVEFATRSIQVDGKT 51 usage_00028.pdb 1 -YLFKVVLIGDSGVGKSNLLSRFTRN---------EFNLESKSTIGVEFATRSIQVDGKT 50 usage_00121.pdb 1 ------LLIGPSGAGKTALLTLFERGPKPIVTSPV---AQTHTSQVPTSV---------- 41 usage_00135.pdb 1 DFLFKFLVIGNAGTGKSCLLHQFIEK---------KFKDDSNHTIGVEFGSKIINVGGKY 51 usage_00154.pdb 1 DYLFKIVLIGDSGVGKSNLLSRFTRD---------EFNL------GVEFATKSIQL-NKI 44 usage_00175.pdb 1 DYLFKVVLIGDSGVGKSNLLSRFTRN---------EFNLESKSTIGVEFATRSIQVDGKT 51 usage_00176.pdb 1 DYLFKVVLIGDSGVGKSNLLSRFTRN---------EFNLESKSTIGVEFATRSIQVDGKT 51 usage_00183.pdb 1 DYLFKVVLIGDSGVGKSNLLSRFTRN---------EFNLESKSTIGVEFATRSIQVDGKT 51 usage_00184.pdb 1 DYLFKVVLIGDSGVGKSNLLSRFTRN---------EFNLESKSTIGVEFATRSIQVDGKT 51 usage_00185.pdb 1 ----KVVLIGDSGVGKSNLLSRFTRN---------EFNLESKSTIGVEFAT--------- 38 usage_00228.pdb 1 DYLFKVVLIGDSGVGKSNLLSRFTRN---------EFNLE----IGVEFATRSIQVDGKT 47 usage_00236.pdb 1 DYLFKVVLIGDSGVGKSNLLSRFTRN---------EFNLESKSTIGVEFATRSIQVDGKT 51 lIG sG GKs LL F r gvef usage_00027.pdb 52 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTY-ENVERWLKELRDHA--- 105 usage_00028.pdb 51 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTY-ENVERWLKELRD----- 102 usage_00121.pdb 42 ---LLIDTPGHPK---LRGTTLQH---VIFLLDAAA-LADSSQTASYLYDVLLSLQKR 89 usage_00135.pdb 52 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLAS-- 106 usage_00154.pdb 45 IKAQIWDTA------AITSAYYRGAVGALLVYDITKKNSF-ENIEKWLKELRDN---- 91 usage_00175.pdb 52 IKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTY-ENVERWLKELRD----- 103 usage_00176.pdb 52 IKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTY-ENVERWLKELRD----- 103 usage_00183.pdb 52 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTY-ENVERWLKELRDH---- 104 usage_00184.pdb 52 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTY-ENVERWLKELRDH---- 104 usage_00185.pdb 39 -KAQIWDTAGQER--AITSAYYRGA-GALLVYDIAKHLTY-ENVERWLKELRDH---- 87 usage_00228.pdb 48 IKAQIWDT--------ITSAYYRGAVGALLVYDIAKHLTY-ENVERWLKELRDHA--- 93 usage_00236.pdb 52 IKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTY-ENVERWLKELRD----- 103 qiwDT t yyrg allvyDi wL r #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################