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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Thu Jan 21 00:59:23 2021
# Report_file: c_0118_22.html
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#====================================
# Aligned_structures: 13
#   1: usage_00040.pdb
#   2: usage_00127.pdb
#   3: usage_00128.pdb
#   4: usage_00204.pdb
#   5: usage_00205.pdb
#   6: usage_00235.pdb
#   7: usage_00247.pdb
#   8: usage_00276.pdb
#   9: usage_00442.pdb
#  10: usage_00469.pdb
#  11: usage_00551.pdb
#  12: usage_00552.pdb
#  13: usage_00553.pdb
#
# Length:        136
# Identity:       46/136 ( 33.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     59/136 ( 43.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           22/136 ( 16.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00040.pdb         1  QVQLVQSGAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNY   60
usage_00127.pdb         1  VQLLEQSGAEVKKPGSSVKVSCQVFGDTFSRYTIQWLRQAPGQGPEWMGNIIPVYNTPNY   60
usage_00128.pdb         1  VQLLEQSGAEVKKPGSSVKVSCQVFGDTFSRYTIQWLRQAPGQGPEWMGNIIPVYNTPNY   60
usage_00204.pdb         1  QVQLVQSGAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNY   60
usage_00205.pdb         1  -VQLVQSGAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNY   59
usage_00235.pdb         1  -VQLVQSGAEVKKPGESLKISCKGSGYSFTSYWIGWVRQAPGQGLEWMGWISAYNGNTNY   59
usage_00247.pdb         1  -VQLVQSGVEVKKPGASVKVSCKASGYTFTNYYMYWVRQAPGQGLEWMGGINPSNGGTNF   59
usage_00276.pdb         1  QVQLVQSGAEVKKPGSSVKVSCEASGVTSSSYTISWVRLAPGQGLEWMGRITPIFDITNY   60
usage_00442.pdb         1  -VQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANY   59
usage_00469.pdb         1  QVQLVQSGAEVKKPGSSVKVSCKSSGGTSNNYAISWVRQAPGQGLDWMGGISPIFGSTAY   60
usage_00551.pdb         1  QVQLVQSGAEVKKPGSSVKVSCKASGGNFNTYTISWVRQAPGQGLEWMGRIIPIFGIVNP   60
usage_00552.pdb         1  QVQLVQSGAEVKKPGSSVKVSCKASGGNFNTYTISWVRQAPGQGLEWMGRIIPIFGIVNP   60
usage_00553.pdb         1  QVQLVQSGAEVKKPGSSVKVSCKASGGNFNTYTISWVRQAPGQGLEWMGRIIPIFGIVNP   60
                              L QSGaEVK PG Sv vSC   G     Y   W RqAPG G eWMG   p     n 

usage_00040.pdb        61  APRFQGRITITADRSTSTAYLELNSLRPEDTAVYYCAREGTT-G-W-LG-KPI-------  109
usage_00127.pdb        61  AQKFQGRLSITADDSTSTAYMELSSLRSEDTAVYFCARVVIPNA-I-RHTMG--------  110
usage_00128.pdb        61  AQKFQGRLSITADDSTSTAYMELSSLRSEDTAVYFCARVVIPNA-I-RHTMG--------  110
usage_00204.pdb        61  APRFQGRITITADRSTSTAYLELNSLRPEDTAVYYCAREGTT-GWGWLG-KPI-------  111
usage_00205.pdb        60  APRFQGRITITADRSTSTAYLELNSLRPEDTAVYYCAREGTT-GWGWLG-KPI-------  110
usage_00235.pdb        60  AQKLQGRVTMTTDTSTSTAYMELRSLRSDDTAVYYCAREG----------D---------  100
usage_00247.pdb        60  NEKFKNRVTLTTDSSTTTAYMELKSLQFDDTAVYYCARRDYR--------FD--------  103
usage_00276.pdb        61  AQKFQGRVTLTADKSTGTTYMELSSLRSDDTAVYYCARDKSD------V-VVVTSIRPAY  113
usage_00442.pdb        60  AQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCARYDGI--------Y---------  102
usage_00469.pdb        61  AQKFQGRVTISADIFSNTAYMELNSLTSEDTAVYFCARHGNY------Y-YY--------  105
usage_00551.pdb        61  AQKFPGRVTINVDKSTNTAYMELSSLRSEDTAVYYCATSGVG------L-HF--------  105
usage_00552.pdb        61  AQKFPGRVTINVDKSTNTAYMELSSLRSEDTAVYYCATSGVG------L-HF--------  105
usage_00553.pdb        61  AQKFPGRVTINVDKSTNTAYMELSSLRSEDTAVYYCATSGVG------L-HF--------  105
                           a  f gR     D st TaY EL SL   DTAVY CA                       

usage_00040.pdb       110  -GAFAHWGQGTLVTVS  124
usage_00127.pdb       111  -YYFDYWGQGTLVTVS  125
usage_00128.pdb       111  -YYFDYWGQGTLVTVS  125
usage_00204.pdb       112  -GAFAHWGQGTLVTVS  126
usage_00205.pdb       111  -GAFAHWGQGTLVTVS  125
usage_00235.pdb       101  -GAFDYWGQGTLVTVS  115
usage_00247.pdb       104  -MGFDYWGQGTTVTV-  117
usage_00276.pdb       114  YYGMDVWGQGTTVTVS  129
usage_00442.pdb       103  -GELDFWGQGTLVTV-  116
usage_00469.pdb       106  -SGMDVWGQGTTVTVS  120
usage_00551.pdb       106  -GYFDYWGQGTQVTVS  120
usage_00552.pdb       106  -GYFDYWGQGTQVTV-  119
usage_00553.pdb       106  -GYFDYWGQGTQVTVS  120
                                 WGQGT VTV 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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