################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:30:45 2021 # Report_file: c_1101_20.html ################################################################################################ #==================================== # Aligned_structures: 6 # 1: usage_00004.pdb # 2: usage_00005.pdb # 3: usage_00344.pdb # 4: usage_00345.pdb # 5: usage_00765.pdb # 6: usage_00782.pdb # # Length: 160 # Identity: 111/160 ( 69.4%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 115/160 ( 71.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 39/160 ( 24.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00004.pdb 1 ---AWLLMAFTALALELTALWFQHVMLLKPCVLCIYERVALFGVLGAALIGAIAPKT--P 55 usage_00005.pdb 1 ---AWLLMAFTALALELTALWFQHVMLLKPCVLCIYERVALFGVLGAALIGAIAPKT--P 55 usage_00344.pdb 1 GRGAWLLMAFTALALELTALWFQHVMLLKPSVLCIYERVALFGVLGAALIGA--IAPKTP 58 usage_00345.pdb 1 GRGAWLLMAFTALALELTALWFQHVMLLKPSVLCIYERVALFGVLGAALIGA--IAPKTP 58 usage_00765.pdb 1 -RGAWLLMAFTALALELTALWFQHVMLLKPCVLSIYERAALFGVLGAALIGA--IAPKTP 57 usage_00782.pdb 1 GRGAWLLMAFTALALELTALWFQHVMLLKPSVLCIYERVALFGVLGAALIGA--IAPKTP 58 AWLLMAFTALALELTALWFQHVMLLKP VLcIYERvALFGVLGAALIGA P usage_00004.pdb 56 LRYVAMVIWLYSAFRGVQLTYEHTMLQLYPSP--FATCDFMVRFPEWLPLDKWVP--QVF 111 usage_00005.pdb 56 LRYVAMVIWLYSAFRGVQLTYEHTMLQLYPSP--FATCDFMVRFPEWLPLDKWVP--QVF 111 usage_00344.pdb 59 LRYVAMVIWLYSAFRGVQLTYEHTMLQLYPSP--FATCDFMV-----LPLDKWVPQVFVA 111 usage_00345.pdb 59 LRYVAMVIWLYSAFRGVQLTYEHTMLQLYPSP--FATCDFMV-----LPLDKWVPQVFVA 111 usage_00765.pdb 58 LRYVAMVIWLYSAFRGVQLTYEHTMLQLYPSPFAT-S-DFMVRFPEWLPLDKWVPQVFVA 115 usage_00782.pdb 59 LRYVAMVIWLYSAFRGVQLTYEHTMLQLYPSP--FATCDFMV-----LPLDKWVPQVFVA 111 LRYVAMVIWLYSAFRGVQLTYEHTMLQLYPSP f t DFMV LPLDKWVP V usage_00004.pdb 112 ---------------VAMPQWLLGIFIAYLIVAVLVVI-- 134 usage_00005.pdb 112 ---------------VAMPQWLLGIFIAYLIVAVLVVI-- 134 usage_00344.pdb 112 SGDCAERQWDFLGLE--MPQWLLGIFIAYLIVAVLV---- 145 usage_00345.pdb 112 SGDCAERQWDFLGLE--MPQWLLGIFIAYLIVAVLVVI-- 147 usage_00765.pdb 116 SGDCAERQWDFLGLE--MPQWLLGIFIAYLIVAVLVVISQ 153 usage_00782.pdb 112 SGDCAERQWDFLGLE--MPQWLLGIFIAYLIVAVLVVI-- 147 MPQWLLGIFIAYLIVAVLV #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################