################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:47:59 2021 # Report_file: c_0599_4.html ################################################################################################ #==================================== # Aligned_structures: 17 # 1: usage_00006.pdb # 2: usage_00008.pdb # 3: usage_00026.pdb # 4: usage_00027.pdb # 5: usage_00028.pdb # 6: usage_00029.pdb # 7: usage_00030.pdb # 8: usage_00034.pdb # 9: usage_00035.pdb # 10: usage_00038.pdb # 11: usage_00041.pdb # 12: usage_00042.pdb # 13: usage_00046.pdb # 14: usage_00048.pdb # 15: usage_00050.pdb # 16: usage_00051.pdb # 17: usage_00052.pdb # # Length: 132 # Identity: 22/132 ( 16.7%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 41/132 ( 31.1%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 25/132 ( 18.9%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00006.pdb 1 --SRAKRIMKEIQAVKDDPAAHITLEFVSES-DIHHLKGTFLGPPGTPYEGGKFVVDIEV 57 usage_00008.pdb 1 ---ALKRINKELSDLARDPPAQCSAGPVG-D-DMFHWQATIMGPNDSPYQGGVFFLTIHF 55 usage_00026.pdb 1 -GTALKRLMAEYKQLTLNPPEGIVAGPMNEE-NFFEWEALIMGPEDTCFEFGVFPAILSF 58 usage_00027.pdb 1 ---ALKRIHKELNDLARDPPAQCRAGPVG-D-DMFHWQATIMGPNDSPYQGGVFFLTIHF 55 usage_00028.pdb 1 ----LKRIHKELNDLARDPPAQCRAGPVG-D-DMFHWQATIMGPNDSPYQGGVFFLTIHF 54 usage_00029.pdb 1 ---ALKRIHKELNDLARDPPAQCRAGPVG-D-DMFHWQATIMGPNDSPYQGGVFFLTIHF 55 usage_00030.pdb 1 ---ALKRIHKELNDLARDPPAQCRAGPVG-D-DMFHWQATIMGPNDSPYQGGVFFLTIHF 55 usage_00034.pdb 1 ---SAKRIQKELAEITLDPPPNCSAGPKG-D-NIYEWRSTILGPPGSVYEGGVFFLDITF 55 usage_00035.pdb 1 -STSAKRIQKELAEITLDPPPNCSAGPKG-D-NIYEWRSTILGPPGSVYEGGVFFLDITF 57 usage_00038.pdb 1 GSMALKRIQKELSDLQRDPPAHCRAGPVG-D-DLFHWQATIMGPPDSAYQGGVFFLTVHF 58 usage_00041.pdb 1 ----LKRIHKELNDLARDPPAQCRAGPVG-D-DMFHWQATIMGPNDSPYQGGVFFLTIHF 54 usage_00042.pdb 1 ---ALKRIQKELSDLQRDPPAHCRAGPVG-D-DLFHWQATIMGPPDSAYQGGVFFLTVHF 55 usage_00046.pdb 1 -----KRIMKEIQAVKDDPAAHITLEFVS-ESDIHHLKGTFLGPPGTPYEGGKFVVDIEV 54 usage_00048.pdb 1 ----LKRIQKELSDLQRDPPAHCSAGPVG-D-DLFHWQATIMGPPDSAYQGGVFFLTVHF 54 usage_00050.pdb 1 ---ALKRIQKELSDLQRDPPAHCSAGPVG-D-DLFHWQATIMGPPDSAYQGGVFFLTVHF 55 usage_00051.pdb 1 ---ALKRIQKELSDLQRDPPAHCSAGPVG-D-DLFHWQATIMGPPDSAYQGGVFFLTVHF 55 usage_00052.pdb 1 -AMAMRRIQKELREIQQDPPCNCSAGPVG-D-DIFHWTATITGPDDSPYQGGLFFLDVHF 57 kRi kE dP t GP y gG F usage_00006.pdb 58 PMEYPFKPPKMQFDTKVYHPNI-SSVTGAICLDILKN-------------AWSPVITLKS 103 usage_00008.pdb 56 PTDYPFKPPKVAFTTRIYHPNI-N-SNGSICLDILRS-------------QWSPALTISK 100 usage_00026.pdb 59 PLDYPLSPPKMRFTCEMFHPNI-Y-PDGRVCISILHAPGDDPMGYESSAERWSPVQSVEK 116 usage_00027.pdb 56 PTDYPFKPPKVAFTTRIYHPNI-N-SNGSIKLDILRS-------------QWSPALTISK 100 usage_00028.pdb 55 PTDYPFKPPKVAFTTRIYHPNI-N-SNGSIKLDILRS-------------QWSPALTISK 99 usage_00029.pdb 56 PTDYPFKPPKVAFTTRIYHPNI-N-SNGSIKLDILRS-------------QWSPALTISK 100 usage_00030.pdb 56 PTDYPFKPPKVAFTTRIYHPNI-N-SNGSIKLDILRS-------------QWSPALTISK 100 usage_00034.pdb 56 SPDYPFKPPKVTFRTRIYHCNI-N-SQGVICLDILKD-------------NWSPALTISK 100 usage_00035.pdb 58 SPDYPFKPPKVTFRTRIYHCNI-N-SQGVICLDILKD-------------NWSPALTISK 102 usage_00038.pdb 59 PTDYPFKPPKIAFTTKIYHPNI-N-SNGSIKLDILRS-------------QWSPALTVSK 103 usage_00041.pdb 55 PTDYPFKPPKVAFTTRIYHPAI-N-SNGSISLDILRS-------------QWSPALTISK 99 usage_00042.pdb 56 PTDYPFKPPKIAFTTKIYHPNI-N-SNGSIKLDILRS-------------QWSPALTVSK 100 usage_00046.pdb 55 PMEYPFKPPKMQFDTKVYHPNISS-VTGAICLDILRN-------------AWSPVITLKS 100 usage_00048.pdb 55 PTDYPFKPPKIAFTTKIYHPNI-N-SNGSICLDILRS-------------QWSPALTVSK 99 usage_00050.pdb 56 PTDYPFKPPKIAFTTKIYHPNI-N-SNGSICLDILRS-------------QWSPALTVSK 100 usage_00051.pdb 56 PTDYPFKPPKIAFTTKIYHPNI-N-SNGSICLDILRS-------------QWSPALTVSK 100 usage_00052.pdb 58 PVDYPFKAPRVTFMTKVYHPNI-N-KNGVICLDILKD-------------QWSPALTLSR 102 YPfkpPk F t yH nI G i ldIL WSP t usage_00006.pdb 104 ALISLQALLQSP 115 usage_00008.pdb 101 VLLSICSLLC-- 110 usage_00026.pdb 117 ILLSVVSMLAEP 128 usage_00027.pdb 101 VLLSICSLLCDP 112 usage_00028.pdb 100 VLLSICSLLCDP 111 usage_00029.pdb 101 VLLSICSLLCDP 112 usage_00030.pdb 101 VLLSICSLLCDP 112 usage_00034.pdb 101 VLLSICSLLTDC 112 usage_00035.pdb 103 VLLSICSLL--- 111 usage_00038.pdb 104 VLLSICSLLCDP 115 usage_00041.pdb 100 VLLSICSLLCDP 111 usage_00042.pdb 101 VLLSICSLLCDP 112 usage_00046.pdb 101 ALISLQALLQS- 111 usage_00048.pdb 100 VLLSICSLL--- 108 usage_00050.pdb 101 VLLSICSLLCDP 112 usage_00051.pdb 101 VLLSICSLLCDP 112 usage_00052.pdb 103 VLLSISSLL--- 111 L S lL #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################