################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:00:22 2021 # Report_file: c_0328_61.html ################################################################################################ #==================================== # Aligned_structures: 5 # 1: usage_00282.pdb # 2: usage_00541.pdb # 3: usage_00621.pdb # 4: usage_00626.pdb # 5: usage_00657.pdb # # Length: 245 # Identity: 45/245 ( 18.4%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 47/245 ( 19.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 116/245 ( 47.3%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00282.pdb ------------------------------------------------------------ usage_00541.pdb 1 MAPYYEALCKSL---D-WQ-----------------IDVDLLNKMKKANEDELKRLDEEL 39 usage_00621.pdb 1 -PYYKYLCEEYLVNNGQS-DLEHDEKSDSLNEWIKFD-QELYNELCKKNESKIKELNEKI 57 usage_00626.pdb 1 APYYEALCKSLD---WQI------------------D-VDLLNKMKKANEDELKRLDEEL 38 usage_00657.pdb ------------------------------------------------------------ usage_00282.pdb 1 ---------EL-EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIAR 50 usage_00541.pdb 40 EDAEKN-LGESEIRDAMMAKAEYLCR-IGDKEGALTAFRKTYDKTVALGHRLDIVFYLLR 97 usage_00621.pdb 58 QKLEEDDEGEL-EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIAR 116 usage_00626.pdb 39 EDAEKN-LGES-EIRDAMMAKAEYLCRIGDKEGALTAFRKTYDKTVALGHRLDIVFYLLR 96 usage_00657.pdb 1 ------------IRDAMMAKAEYLCR-IGDKEGALTAFRKTYDKTVALGHRLDIVFYLLR 47 IGDK A K K G D R usage_00282.pdb 51 LGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLA 110 usage_00541.pdb 98 IGLFYMDNDLITRNTEKAKSLIEEGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVS 157 usage_00621.pdb 117 LGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDS-L 175 usage_00626.pdb 97 IGLFYMDNDLITRNTEKAKSLIEEGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVS 156 usage_00657.pdb 48 IGLFYMDNDLITRNTEKAKSLIEEGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVS 107 G FY D E S IE GGDW RRNR K Y G C A R FK AA L D usage_00282.pdb 111 TF-TSIELTSYESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTA-ALQSISSLTI 168 usage_00541.pdb 158 TF-TSYELMDYKTFVTYTVYVSMIA----------------------------------- 181 usage_00621.pdb 176 ATFTSIELTSYESIATYASVTGLF------------------------------------ 199 usage_00626.pdb 157 TF-TSYELMDYKTFVTYTVYVSMI------------------------------------ 179 usage_00657.pdb 108 TF-TSYELMDYKTFVTYTVYVSMIALERPDLREKVIKGAEILEVL-HSLP---------- 155 tf TS EL Y TY usage_00282.pdb 169 SLYAS 173 usage_00541.pdb ----- usage_00621.pdb ----- usage_00626.pdb ----- usage_00657.pdb ----- #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################