################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Sun Jan 24 08:57:15 2021 # Report_file: c_0669_140.html ################################################################################################ #==================================== # Aligned_structures: 4 # 1: usage_00279.pdb # 2: usage_00303.pdb # 3: usage_00346.pdb # 4: usage_01004.pdb # # Length: 84 # Identity: 3/ 84 ( 3.6%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 20/ 84 ( 23.8%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 44/ 84 ( 52.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00279.pdb 1 -LF---IDTAHQRIKFSS-FDNE-------E--------------IIYILDYDDTQHILM 34 usage_00303.pdb 1 YAQ---LG-NNNDVNINFGN--IDSPYIIKVISKYDPN---KDDYT-TIQ-----QTVTM 45 usage_00346.pdb 1 YAQ---LG-NNNDVNINFGN--IDSPYIIKVISKYDPN-------YTTIQ-----QTVTM 42 usage_01004.pdb 1 -VTINKNY-GTNMANINFGD--IDSAYIVKVVSKYTPGAED----DLAVQ-----QGVRM 47 n ninf i v iq Q v M usage_00279.pdb 35 QTS-SKQ--GIGTSRPIVYE---- 51 usage_00303.pdb 46 QTTINEY-TGEFRTASYDNTI--- 65 usage_00346.pdb 43 QTTINEY-TGEFRTASYDNTIAFS 65 usage_01004.pdb 48 TTTNK--Y-NYSSYAGYTNTILST 68 qTt g a y nt #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################