################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:59:15 2021 # Report_file: c_0040_13.html ################################################################################################ #==================================== # Aligned_structures: 13 # 1: usage_00003.pdb # 2: usage_00035.pdb # 3: usage_00040.pdb # 4: usage_00054.pdb # 5: usage_00055.pdb # 6: usage_00056.pdb # 7: usage_00057.pdb # 8: usage_00061.pdb # 9: usage_00077.pdb # 10: usage_00094.pdb # 11: usage_00095.pdb # 12: usage_00100.pdb # 13: usage_00101.pdb # # Length: 241 # Identity: 11/241 ( 4.6%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 20/241 ( 8.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 59/241 ( 24.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00003.pdb 1 SPLSISTALAFLSLGAHNTTLTEILKGLKF-N--LTETSEAEIHQSFQHLLRTLNQ-SSD 56 usage_00035.pdb 1 -AFSVLPPLGQLALASVGESHDELLRALAL-P--ND-N---VTKDVFADLNRGVR--AVK 50 usage_00040.pdb 1 -----------------ERTESIIHRALYY-DLISS-P---DIHGTYKELLDTVTA-PQ- 36 usage_00054.pdb 1 SAFSVLPPLGQLALASVGESHDELLRALAL-P--ND-N---VTKDVFADLNRGVR--AVK 51 usage_00055.pdb 1 --VSISSALAMLSLGAKGDTHTQILEGLGF-N--SE-A---DIHQGFQHLLQTLNR-PK- 49 usage_00056.pdb 1 -PVSISSALAMLSLGAKGDTHTQILEGLGF-N--SE-A---DIHQGFQHLLQTLNR-PK- 50 usage_00057.pdb 1 -PVSISSALAMLSLGAKGDTHTQILEGLGF-N--SE-A---DIHQGFQHLLQTLNR-PK- 50 usage_00061.pdb 1 --FSIASLLTQVLLGAGENTKTNLESILSY-P--KD-F--TCVHQALKGFT-----TK-- 45 usage_00077.pdb 1 SPLSISTALAFLSLGAHNTTLTEILKGLKF-N--LTETSEAEIHQSFQHLLRTLNQ-SSD 56 usage_00094.pdb 1 SPFSAATLLALAQSGCRGDTAEEIRQVLHF-V--GD-R--EKAEGAVKEVLSKLTN-EE- 52 usage_00095.pdb 1 SPVSISTAFAMLALGARSATQSQILEGLAF-N--LTEIQEKEIHEGFHNLIHMLNH-PEG 56 usage_00100.pdb 1 -PLSIASALGVVTAGANGSTRAELDTAL-GF----------KSMKYFARLNGALYK-RSA 47 usage_00101.pdb 1 -PLSIASALGVVTAGANGSTRAELDTAL-G------------SMKYFARLNGALYK-RSA 45 L usage_00003.pdb 57 ELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDFQDSAAAKKLINDYVKNGTRGK 116 usage_00035.pdb 51 GVDLKMASKIYVAKGLELNDDFAAVSRDVFGSEVQNVDFVKSVEAAGAINKWVEDQTNNR 110 usage_00040.pdb 37 -KNLKSASRIVFEKKLRIKSSFVAPLEKSYGTRPRVLTG-NPRLDLQEINNWVQAQMKGK 94 usage_00054.pdb 52 GVDLKMASKIYVAKGLELNDDFAAVSRDVFGSEVQNVDFVKSVEAAGAINKWVEDQTNNR 111 usage_00055.pdb 50 GLQLKTANGLFVDKSLKLLDSFLEDSKKLYQAEAFSVDF-DPEEAKKQINDWVEKQTNGK 108 usage_00056.pdb 51 GLQLKTANGLFVDKSLKLLDSFLEDSKKLYQAEAFSVDF-DPEEAKKQINDWVEKQTNGK 109 usage_00057.pdb 51 GLQLKTANGLFVDKSLKLLDSFLEDSKKLYQAEAFSVDF-DPEEAKKQINDWVEKQTNGK 109 usage_00061.pdb 46 --GVTSVSQIFHSPDLAIRDTFVNASRTLYSSSPRVLSN-NSDANLELINTWVAKNTNNK 102 usage_00077.pdb 57 ELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDFQDSAAAKKLINDYVKNGTRGK 116 usage_00094.pdb 53 -YTLHTANKIYVKTNFSVREEFQKIAVEVYGAQSENVDFSEKNDAAKLMNAWVEEQTQHK 111 usage_00095.pdb 57 GVQLNMMNAIFVTAALALLRKFLDDAKALYQLEAFTTDFNKPTEAEKQINDYIERKTHGK 116 usage_00100.pdb 48 GFELMGKNVVFSKKGLWLYRQFTRTVAHLFKSNVRSVDFGDSKNAVELMNAYIEKVTSKK 107 usage_00101.pdb 46 GFELMGKNVVFSKKGLWLYRQFTRTVAHLFKSNVRSVDFGDSKNAVELMNAYIEKVTSKK 105 l l F N t usage_00003.pdb 117 ITDLIK-D-LDSQTMMVLVNYIFFKAKWEMPFDPQDTHQSRFYLSKKKWVMVPMMSLHH- 173 usage_00035.pdb 111 IKNLVDPDALDETTRSVLVNAIYFKGSWKDKFNKERTMDRDFHVSKDKTIKVPTMIG-K- 168 usage_00040.pdb 95 LARSTK-E-IPDEISILLLGVAHFKGQWVTKFDSRKTSLEDFYLDEERTVRVPMMSDPK- 151 usage_00054.pdb 112 IKNLVDPDALDETTRSVLVNAIYFKGSWKDKFVKERTMDRDFHVSKDKTIKVPTMIG-K- 169 usage_00055.pdb 109 IKDLLK-D-LDSDTVLVLVNAIYFKGKWKKPFDPENTKEEDFHVDEKTTVKVPMMSQ-K- 164 usage_00056.pdb 110 IKDLLK-D-LDSDTVLVLVNAIYFKGKWKKPFDPENTKEEDFHVDEKTTVKVPMMSQ-K- 165 usage_00057.pdb 110 IKDLLK-D-LDSDTVLVLVNAIYFKGKWKKPFDPENTKEEDFHVDEKTTVKVPMMSQ-K- 165 usage_00061.pdb 103 ISRLLD-S-LPSDTRLVLLNAIYLSAKWKTTFDPKKTRMEPFHFK-NSVIKVPMMNSKK- 158 usage_00077.pdb 117 ITDLIK-D-LDSQTMMVLVNYIFFKAKWEMPFDPQDTHQSRFYLSKKKWVMVPMMSLHH- 173 usage_00094.pdb 112 IQNLVDPEILNNLTRVVLINALYFNAKWLVPFPPFHTRKSDFHKSAKEVVQVDTMYL-DE 170 usage_00095.pdb 117 ITNLVK-D-MDPQTVMLLASFVYFKGSWEKPFEAEHTEEREFFVDAETTVKVPMMYQ-M- 172 usage_00100.pdb 108 FPDVIS-D-VDTDTSLVIVNVIYFKGSWGNKFEPDLTKNVRFWVNSSYSMMVPTMHQ-R- 163 usage_00101.pdb 106 FPDVIS-D-VDTDTSLVIVNVIYFKGSWGNKFEPDLTKNVRFWVNSSYSMMVPTMHQ-R- 161 t f W F T F Vp M usage_00003.pdb 174 LTIPYFRDEELSCTVVELKYTG-NASALFILPDQ-D-KMEEVEAML-LPETLKRWRDSL- 228 usage_00035.pdb 169 KDVRYADVPELDAKMIEMSYEGDQASMIIILPNQVD-GITALEQKLKDPKALSRAEE--- 224 usage_00040.pdb 152 AVLRYGLDSDLSCKIAQLPLTG-SMSIIFFLPLKVTQNLTLIEESL-TSEFIHDIDRE-- 207 usage_00054.pdb 170 KDVRYADVPELDAKMIEMSYEGDQASMIIILPNQVD-GITALEQKLKDPKALSRAEERL- 227 usage_00055.pdb 165 GKFYYYHDDELSCKVLELPYKG-NASMLIILPDE-G-GLQHLEQSL-TPETLSKWLKS-- 218 usage_00056.pdb 166 GKFYYYHDDELSCKVLELPYKG-NASMLIILPDE-G-GLQHLEQSL-TPETLSKWLKS-- 219 usage_00057.pdb 166 GKFYYYHDDELSCKVLELPYKG-NASMLIILPDE-G-GLQHLEQSL-TPETLSKWLKS-- 219 usage_00061.pdb 159 YPVAHFIDQTLKAKVGQLQLSH-NLSLVILVPQNLKHRLEDMEQAL-SPSVFKAIMEKLE 216 usage_00077.pdb 174 LTIPYFRDEELSCTVVELKYTG-NASALFILPDQ-D-KMEEVEAML-LPETLKRWRDSL- 228 usage_00094.pdb 171 QYFNYYECHHLDAKLLELPFKG-GASLTIVLSNQIE-GLVSLESKI-K-RSFL------- 219 usage_00095.pdb 173 GRFDFYFDEELSCTVVRLHYNG-SATAFLVLPAK-G-KMKQLEQTL-DKETIQKWS---- 224 usage_00100.pdb 164 AKLSYTQDRKLRSTVVKLPYEG-GASMLVIVPHRTE-DLPKVEESV-SQEQLEEWLSLL- 219 usage_00101.pdb 162 AKLSYTQDRKLRSTVVKLPYEG-GASMLVIVPHRTE-DLPKVEESV-SQEQLEEWLSLL- 217 L g s p E usage_00003.pdb - usage_00035.pdb - usage_00040.pdb - usage_00054.pdb - usage_00055.pdb - usage_00056.pdb - usage_00057.pdb - usage_00061.pdb 217 M 217 usage_00077.pdb - usage_00094.pdb - usage_00095.pdb - usage_00100.pdb - usage_00101.pdb - #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################