################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:06:03 2021 # Report_file: c_0064_1.html ################################################################################################ #==================================== # Aligned_structures: 14 # 1: usage_00005.pdb # 2: usage_00038.pdb # 3: usage_00079.pdb # 4: usage_00080.pdb # 5: usage_00081.pdb # 6: usage_00082.pdb # 7: usage_00083.pdb # 8: usage_00084.pdb # 9: usage_00085.pdb # 10: usage_00086.pdb # 11: usage_00088.pdb # 12: usage_00089.pdb # 13: usage_00094.pdb # 14: usage_00099.pdb # # Length: 181 # Identity: 13/181 ( 7.2%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 28/181 ( 15.5%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 60/181 ( 33.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00005.pdb 1 PMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRA 60 usage_00038.pdb 1 PVIALLKGYS-GGGLELAESADIRIA-SDAVIGQPESSIGINAGAGGNVILPKLVGRGSA 58 usage_00079.pdb 1 PMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRA 60 usage_00080.pdb 1 PMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRA 60 usage_00081.pdb 1 PMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRA 60 usage_00082.pdb 1 PMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRA 60 usage_00083.pdb 1 PMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRA 60 usage_00084.pdb 1 PMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRA 60 usage_00085.pdb 1 PMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRA 60 usage_00086.pdb 1 PVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVA 60 usage_00088.pdb 1 PVIAAIHGAALGGGLEFA-SCH-RFATESAKLGLPELTLGLIPGFAGTQRLPRYVGKAKA 58 usage_00089.pdb 1 PVIAAIHGAALGGGLEFA-SCH-RFATESAKLGLPELTLGLIPGFAGTQRLPRYVGKAKA 58 usage_00094.pdb 1 VFIAAINGAALGGGTELALACDLRVAAPAAELGLTEVKLGIIPGGGGTQRLARLVGPGRA 60 usage_00099.pdb 1 PVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVAGRARA 60 p iaa G a GgG e A A A g e lG pg Gt L G A usage_00005.pdb 61 LEWLWTGARMSAKEAEQLGIVNRVVSPELLME-ETMRLAGRLAEQPPLALR--------- 110 usage_00038.pdb 59 AYLA-SGKKLNAQEA-ALGLVDEVVD--D-EA-KAWKIIDDICKKPKKTLQ--------- 103 usage_00079.pdb 61 LEWLWTGARMSAKEAEQLGIVNRVVSPELLME-ETMRLAGRLAEQPPLALR--------- 110 usage_00080.pdb 61 LEWLWTGARMSAKEAEQLGIVNRVVSPELLME-ETMRLAGRLAEQPPLALR--------- 110 usage_00081.pdb 61 LEWLWTGARMSAKEAEQLGIVNRVVSPELLME-ETMRLAGRLAEQPPLALR--------- 110 usage_00082.pdb 61 LEWLWTGARMSAKEAEQLGIVNRVVSPELLME-ETMRLAGRLAEQPPLALR--------- 110 usage_00083.pdb 61 LEWLWTGARMSAKEAEQLGIVNRVVSPELLME-ETMRLAGRLAEQPPLALR--------- 110 usage_00084.pdb 61 LEWLWTGARMSAKEAEQLGIVNRVVSPELLME-ETMRLAGRLAEQPPLALR--------- 110 usage_00085.pdb 61 LEWLWTGARMSAKEAEQLGIVNRVVSPELLME-ETMRLAGRLAEQPPLALR--------- 110 usage_00086.pdb 61 LDLITSGKYLSADEALRLGILDAVVKS-DPVEEAIKFAQKIID-KPIEPRRIFNKPVPSL 118 usage_00088.pdb 59 CE--LTSTPITGAEALKWGLVNGVFAEETFLD-DTLKVAKQIAGKSPATAR--------- 106 usage_00089.pdb 59 CE--LTSTPITGAEALKWGLVNGVFAEETFLD-DTLKVAKQIAGKSPATAR--------- 106 usage_00094.pdb 61 KDLILTARRINAAEAFSVGLANRLAPEGHLLA-VAYGLAESVVENAPIAVA--------- 110 usage_00099.pdb 61 MGLALLGNQLSAEQAHEWGMIWQVVDDETLAD-TAQQLARHLATQPTFGLG--------- 110 eA G v usage_00005.pdb 111 ---------LIKEAVQKAVD----YPLYE-GMQFERKNFYLLFA--SEDQKEGMAAFLEK 154 usage_00038.pdb 104 ---------FIKRAINSSYD-----GLES--ADQEALYFSLLFT--DPEVLDAL------ 139 usage_00079.pdb 111 ---------LIKEAVQKAVD----YPLYE-GMQFERKNFYLLFA--SEDQKEGMAAFLEK 154 usage_00080.pdb 111 ---------LIKEAVQKAVD----YPLYE-GMQFERKNFYLLFA--SEDQKEGMAAFLE- 153 usage_00081.pdb 111 ---------LIKEAVQKAVD----YPLYE-GMQFERKNFYLLFA--SEDQKEGMAAFLEK 154 usage_00082.pdb 111 ---------LIKEAVQKAVD----YPLYE-GMQFERKNFYLLFA--SEDQKEGMAAFLE- 153 usage_00083.pdb 111 ---------LIKEAVQKAVD----YPLYE-GMQFERKNFYLLFA--SEDQKEGMAAFLEK 154 usage_00084.pdb 111 ---------LIKEAVQKAVD----YPLYE-GMQFERKNFYLLFA--SEDQKEGMAAFLE- 153 usage_00085.pdb 111 ---------LIKEAVQKAVD----YPLYE-GMQFERKNFYLLFA--SEDQKEGMAAFLEK 154 usage_00086.pdb 119 PNMDSVFAEAIAKVRKQYP----------GVLAPETCVRSIQAS--VK------------ 154 usage_00088.pdb 107 ---------AVLELLQTTKSSHYYEGVQR-EAQIFGEVFTS-E-DGREGVAAFLEK---- 150 usage_00089.pdb 107 ---------AVLELLQTTKSSHYYEGVQR-EAQIFGEVFTS-E-DGREGVAAFLEK---- 150 usage_00094.pdb 111 ---------TAKHAIDEGTG----LELDD-ALALELRKYEEILK--TEDRLEGLRAFAEK 154 usage_00099.pdb 111 ---------LIKQAINSAET----NTLDT-QLDLERDYQRLAGR--SADYREGVSAFLAK 154 usage_00005.pdb - usage_00038.pdb - usage_00079.pdb - usage_00080.pdb - usage_00081.pdb - usage_00082.pdb - usage_00083.pdb - usage_00084.pdb - usage_00085.pdb - usage_00086.pdb 155 H 155 usage_00088.pdb - usage_00089.pdb - usage_00094.pdb - usage_00099.pdb - #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################