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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Wed Jan 20 23:02:57 2021
# Report_file: c_0001_11.html
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#====================================
# Aligned_structures: 4
#   1: usage_00011.pdb
#   2: usage_00012.pdb
#   3: usage_00035.pdb
#   4: usage_00036.pdb
#
# Length:        244
# Identity:       30/244 ( 12.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    119/244 ( 48.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          121/244 ( 49.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00011.pdb         1  CWIYDEN--AAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADIS------D------   46
usage_00012.pdb         1  -------SSSVREE------------------CAIYGDARV----LNQSEILAI------   25
usage_00035.pdb         1  -------------------------------------QSEI----LA------IQGLTHE   13
usage_00036.pdb         1  --------------------------------ARVLNQSEI----LA------I------   12
                                                                   i    l       i      

usage_00011.pdb        47  ---GARISDNVTIQSSSVREECAIYGDARVLNQSEILAAQILQIYDRATVNH-----SRI   98
usage_00012.pdb        26  --QILQIYDRATVNHSRIVHQVQLYGNATITH-AFIEH--RAEVFDFALIEGDKDNNVWI   80
usage_00035.pdb        14  HAQILQIYDRATVNHSRIVHQVQLYGNATITH-AFIEH--RAEVFDFALIEGDKDNNVWI   70
usage_00036.pdb        13  ---ILQIYDRATVNHSRIVHQVQLYGNATITH-AFIEH--RAEVFDFALIEGDKDNNVWI   66
                              ilqIyDraTvnhSrivhqvqlYGnAtith afIeh  raevfDfAlieg     vwI

usage_00011.pdb        99  VHQVQLYGNATITH-------AFIEHRAEVFDFALIEGDKDNNVWICDCAKVYGHARVIA  151
usage_00012.pdb        81  CDCAKVYGHARVIAGTEEDAIPTLRYSSQVAEHALIEG----NCVLKHHVLVGGHAEVRG  136
usage_00035.pdb        71  CDCAKVYGHARVIAGTEEDAIPTLRYSSQVAEHALIEG----NCVLKHHVLVGGHAEVRG  126
usage_00036.pdb        67  CDCAKVYGHARVIAGTEEDAIPTLRYSSQVAEHALIEG----NCVLKHHVLVGGHAEVRG  122
                           cdcakvYGhArvia       ptlryssqVaehALIEG    NcvlkhhvlVgGHAeVrg

usage_00011.pdb       152  GTEEDAIPTLRYSSQVAEHALIE-------------------------------------  174
usage_00012.pdb       137  -----GPILLDDRVLIEGHACIQGEILIERQVEISGRAAVIAFDNTIHLRG---------  182
usage_00035.pdb       127  -----GPILLDDRVLIEGHACIQGEILIERQVEISGRAAVIAFDDNTIHLRGPKVINGED  181
usage_00036.pdb       123  -----GPILLDDRVLIEGHACIQGEILIERQVEISGRAAVIAFDDNTIHLRGPKVINGED  177
                                gpilLddrvliegHAcIq                                     

usage_00011.pdb            ----     
usage_00012.pdb            ----     
usage_00035.pdb       182  RITR  185
usage_00036.pdb       178  RIT-  180
                               


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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