################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:28:29 2021 # Report_file: c_0539_11.html ################################################################################################ #==================================== # Aligned_structures: 6 # 1: usage_00028.pdb # 2: usage_00029.pdb # 3: usage_00062.pdb # 4: usage_00063.pdb # 5: usage_00064.pdb # 6: usage_00065.pdb # # Length: 149 # Identity: 88/149 ( 59.1%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 88/149 ( 59.1%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 18/149 ( 12.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00028.pdb 1 GFKIAMETLDGGRIGVAAQALGIAEGALAAAVKYSKEREQFGRSISKFQALQFMMADMAT 60 usage_00029.pdb 1 GFKIAMETLDGGRIGVAAQALGIAEGALAAAVKYSKEREQFGRSISKFQALQFMMADMAT 60 usage_00062.pdb 1 -------------PTIGAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQGVQFMLADMAM 47 usage_00063.pdb 1 -------------PTIGAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQGVQFMLADMAM 47 usage_00064.pdb 1 -------------PTIGAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQGVQFMLADMAM 47 usage_00065.pdb 1 -------------PTIGAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQGVQFMLADMAM 47 AQA GIA GAL AA Y KER QFGR S Q QFM ADMA usage_00028.pdb 61 KIEAARYLVYHAAMLKNEGKPYSEAAAMAKCFASDVAMEVTTDAVQIFGGYGYTVDYPAE 120 usage_00029.pdb 61 KIEAARYLVYHAAMLKNEGKPYSEAAAMAKCFASDVAMEVTTDAVQIFGGYGYTVDYPAE 120 usage_00062.pdb 48 KIEAARLMVYSAAARAERG---GFISAASKCFASDVAMEVTTDAVQLFGGYGYTQDFPVE 104 usage_00063.pdb 48 KIEAARLMVYSAAARAERG---GFISAASKCFASDVAMEVTTDAVQLFGGYGYTQDFPVE 104 usage_00064.pdb 48 KIEAARLMVYSAAARAERG-DLGFISAASKCFASDVAMEVTTDAVQLFGGYGYTQDFPVE 106 usage_00065.pdb 48 KIEAARLMVYSAAARAERG--LGFISAASKCFASDVAMEVTTDAVQLFGGYGYTQDFPVE 105 KIEAAR VY AA G A KCFASDVAMEVTTDAVQ FGGYGYT D P E usage_00028.pdb 121 RYMRNAKITQIYEGTNQVMRIVTSRAL-- 147 usage_00029.pdb 121 RYMRNAKITQIYEGTNQVMRIVTSRALL- 148 usage_00062.pdb 105 RMMRDAKITQIYEGTNQIQRVVMSRALLR 133 usage_00063.pdb 105 RMMRDAKITQIYEGTNQIQRVVMSRAL-- 131 usage_00064.pdb 107 RMMRDAKITQIYEGTNQIQRVVMSRALLR 135 usage_00065.pdb 106 RMMRDAKITQIYEGTNQIQRVVMSRALLR 134 R MR AKITQIYEGTNQ R V SRAL #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################