################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:44:56 2021 # Report_file: c_0114_1.html ################################################################################################ #==================================== # Aligned_structures: 17 # 1: usage_00007.pdb # 2: usage_00016.pdb # 3: usage_00039.pdb # 4: usage_00066.pdb # 5: usage_00067.pdb # 6: usage_00081.pdb # 7: usage_00082.pdb # 8: usage_00083.pdb # 9: usage_00084.pdb # 10: usage_00085.pdb # 11: usage_00113.pdb # 12: usage_00114.pdb # 13: usage_00117.pdb # 14: usage_00119.pdb # 15: usage_00133.pdb # 16: usage_00137.pdb # 17: usage_00138.pdb # # Length: 123 # Identity: 41/123 ( 33.3%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 50/123 ( 40.7%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 13/123 ( 10.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00007.pdb 1 -VQLQQSGPELVKPGASVKVSCKASGYSFTDYNMYWVKQNHGESLEWIAYIDPSNGDTFY 59 usage_00016.pdb 1 EVQLQQSGPELVKPGASVKMSCKASGYTFTDYYIHWNKQSHGKSLEWIGYIYPNNGGNGY 60 usage_00039.pdb 1 -IQLQQSGPELVKPGASVKVSCKASGYSFTDYFIYWVKQSHGKSLEWIGDIDPYNGDTSY 59 usage_00066.pdb 1 -MQLQQSGAELLRPGTSVKLSCKTSGYIFTSYWIHWVKQRSGQGLEWIARIYPGTGSTYY 59 usage_00067.pdb 1 -MQLQQSGAELLRPGTSVKLSCKTSGYIFTSYWIHWVKQRSGQGLEWIARIYPGTGSTYY 59 usage_00081.pdb 1 -MQLQQSGAELLRPGTSVKLSCKTSGYIFTSYWIHWVKQRSGQGLEWIARIYPGTGSTYY 59 usage_00082.pdb 1 -VKLQESGAELVRPGASVKLSCKTSGYIFTSYWIHWVKQRAAAGLEWIARIYPGTGSSYY 59 usage_00083.pdb 1 -MQLQQSGAELLRPGTSVKLSCKTSGYIFTSYWIHWVKQRSGQGLEWIARIYPGTGSTYY 59 usage_00084.pdb 1 -MQLQQSGAELLRPGTSVKLSCKTSGYIFTSYWIHWVKQRSGQGLEWIARIYPGTGSTYY 59 usage_00085.pdb 1 -MQLQQSGAELLRPGTSVKLSCKTSGYIFTSYWIHWVKQRSGQGLEWIARIYPGTGSTYY 59 usage_00113.pdb 1 -VQLVESEAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGTIPIFGTADY 59 usage_00114.pdb 1 -VQLVESEAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGTIPIFGTADY 59 usage_00117.pdb 1 -VQLQQSGPELVKPGASVKISCKVSGYAISSSWMNWVKQRPGQGLEWIGRIYPGDGDTKY 59 usage_00119.pdb 1 EVQLVESGAEVKKPGSSVKVSCKASGGTFITHVFTWVRQAPGQGLEWVGGFIAIFGTSNY 60 usage_00133.pdb 1 EVQLQQSGPELVKPGSSVKISCKASRNTFTDYNLDWVKQSHGKTLEWIGNVYPNNGVTGY 60 usage_00137.pdb 1 -MQLQQSGAELLRPGTSVKLSCKTSGYIFTSYWIHWVKQRSGQGLEWIARIYPGTGSTYY 59 usage_00138.pdb 1 -MQLQQSGAELLRPGTSVKLSCKTSGYIFTSYWIHWVKQRSGQGLEWIARIYPGTGSTYY 59 qL S E PG SVK SCK Sg f Wv Q g LEW p G Y usage_00007.pdb 60 NQKFQGKATVTLDKSSSTAFMHLNSLTSEDSAVYYCARGGG-----L-F--AFWGQGTLV 111 usage_00016.pdb 61 NHKFKGKATLTVDKSSSTAYMDVRTLTSEDSAVYYCGRSTW-----D-DF-DYWGQGTTL 113 usage_00039.pdb 60 NQKFRDKATLTVDQSSTTAFMHLNSLTSEDSAVYFCARG---------L--RFWGQGTLV 108 usage_00066.pdb 60 NEKFKGKATLTADKSSSTAYMQLSTLKSEDSAVYFCTRWGFIPVR-EDYVMDYWGQGTLV 118 usage_00067.pdb 60 NEKFKGKATLTADKSSSTAYMQLSTLKSEDSAVYFCTRWGFIPVR-EDYVMDYWGQGTLV 118 usage_00081.pdb 60 NEKFKGKATLTADKSSSTAYMQLSTLKSEDSAVYFCTRWGFIPVR-EDYVMDYWGQGTLV 118 usage_00082.pdb 60 NVKFKGKATLTADKSSSTAYMQLSSLKSDDSAVYFCVRWGFIPVR-EDYVLDYWGQGTLV 118 usage_00083.pdb 60 NEKFKGKATLTADKSSSTAYMQLSTLKSEDSAVYFCTRWGFIPVR-EDYVMDYWGQGTLV 118 usage_00084.pdb 60 NEKFKGKATLTADKSSSTAYMQLSTLKSEDSAVYFCTRWGFIPVR-EDYVMDYWGQGTLV 118 usage_00085.pdb 60 NEKFKGKATLTADKSSSTAYMQLSTLKSEDSAVYFCTRWGFIPVR-EDYVMDYWGQGTLV 118 usage_00113.pdb 60 AQEFQGRVTITTDESTSTAYMELSGLRSEDTAVYYCVLLGTTMVT-GHYF-DYWGQGTLV 117 usage_00114.pdb 60 AQEFQGRVTITTDESTSTAYMELSGLRSEDTAVYYCVLLGTTMVT-GHYF-DYWGQGTLV 117 usage_00117.pdb 60 NGKFKDKATLTVDKSSSTAYMQLSSLTSVDSAVYFCARDGY--RY-Y-F--DYWGQGTSV 113 usage_00119.pdb 61 AQKFQGRVTITADESTSTAYMELTSLTSEDTAVYYCARGIS--GSYGWF--DPWGQGTLV 116 usage_00133.pdb 61 NQKFRGKATLTVDKSSSTAYMELHSLTSEDSAVYYCALYYY-----D-V--SYWGQGTLV 112 usage_00137.pdb 60 NEKFKGKATLTADKSSSTAYMQLSTLKSEDSAVYFCTRWGFIPVR-EDYVMDYWGQGTLV 118 usage_00138.pdb 60 NEKFKGKATLTADKSSSTAYMQLSTLKSEDSAVYFCTRWGFIPVR-EDYVMDYWGQGTLV 118 F T T D S sTA M l L S D AVY C WGQGT v usage_00007.pdb 112 TVS 114 usage_00016.pdb 114 TVS 116 usage_00039.pdb 109 TVS 111 usage_00066.pdb 119 TVS 121 usage_00067.pdb 119 TVS 121 usage_00081.pdb 119 TVS 121 usage_00082.pdb 119 TVS 121 usage_00083.pdb 119 TVS 121 usage_00084.pdb 119 TVS 121 usage_00085.pdb 119 TVS 121 usage_00113.pdb 118 TV- 119 usage_00114.pdb 118 TV- 119 usage_00117.pdb 114 TVS 116 usage_00119.pdb 117 TVS 119 usage_00133.pdb 113 TVS 115 usage_00137.pdb 119 TVS 121 usage_00138.pdb 119 TVS 121 TV #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################