################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:18:57 2021 # Report_file: c_1409_88.html ################################################################################################ #==================================== # Aligned_structures: 19 # 1: usage_00078.pdb # 2: usage_00534.pdb # 3: usage_00551.pdb # 4: usage_00552.pdb # 5: usage_00705.pdb # 6: usage_00706.pdb # 7: usage_00716.pdb # 8: usage_01203.pdb # 9: usage_01397.pdb # 10: usage_01406.pdb # 11: usage_01422.pdb # 12: usage_01423.pdb # 13: usage_01474.pdb # 14: usage_01577.pdb # 15: usage_01796.pdb # 16: usage_01797.pdb # 17: usage_01841.pdb # 18: usage_01850.pdb # 19: usage_01851.pdb # # Length: 41 # Identity: 0/ 41 ( 0.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 25/ 41 ( 61.0%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 14/ 41 ( 34.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00078.pdb 1 --GKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALNNT 39 usage_00534.pdb 1 PVRVEEVSRRIKRWAEDEVQ----LYPEEWEGQFDGF---- 33 usage_00551.pdb 1 -SGKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALNNT 40 usage_00552.pdb 1 -SGKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALNNT 40 usage_00705.pdb 1 ------RKNSDMKRLLTKLLVGRPTKWYDLLPVVQLAMNNT 35 usage_00706.pdb 1 ----VERKNSDMKRLLTKLLVGRPTKWYDLLPVVQLAMNNT 37 usage_00716.pdb 1 ----VERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALN-- 35 usage_01203.pdb 1 --SKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALNNT 39 usage_01397.pdb 1 ----VERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALN-- 35 usage_01406.pdb 1 -SGKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALNNT 40 usage_01422.pdb 1 ----VERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALNNT 37 usage_01423.pdb 1 ----VERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALNNT 37 usage_01474.pdb 1 --GKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALNN- 38 usage_01577.pdb 1 -SGKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALNNT 40 usage_01796.pdb 1 -SGKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALNNT 40 usage_01797.pdb 1 -SGKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALNNT 40 usage_01841.pdb 1 -SGKVERKHSDIKRLLTKLLVGRPTKWYDLLPVVQLALNNT 40 usage_01850.pdb 1 --GKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALNNT 39 usage_01851.pdb 1 -SGKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALNNT 40 rk sd krlltkll tkwydllpvvqla #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################