################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:46:02 2021 # Report_file: c_0048_3.html ################################################################################################ #==================================== # Aligned_structures: 8 # 1: usage_00022.pdb # 2: usage_00038.pdb # 3: usage_00051.pdb # 4: usage_00087.pdb # 5: usage_00088.pdb # 6: usage_00089.pdb # 7: usage_00123.pdb # 8: usage_00125.pdb # # Length: 275 # Identity: 14/275 ( 5.1%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 34/275 ( 12.4%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 90/275 ( 32.7%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00022.pdb 1 RAAVVTGGASGIGLATATEFARR--G-ARLVLSDV-DQPALEQAVNGLRGQGF---DAHG 53 usage_00038.pdb 1 -VVLITGCSSGIGLHLAVRLASDPSQSFKVYATLR-DLKTQGRLWEAARALACPPGSLET 58 usage_00051.pdb 1 KVAIITGSSNGIGRATAVLFARE--G-AKVTITGR-HAERLEETRQQILAAGVSEQNVNS 56 usage_00087.pdb 1 KVALVTASTDGIGLAIARRLAQD--G-AHVVVSSR-KQENVDRTVATLQGEGL---SVTG 53 usage_00088.pdb 1 KVALVTASTDGIGLAIARRLAQD--G-AHVVVSSR-KQENVDRTVATLQGEGL---SVTG 53 usage_00089.pdb 1 KVALVTASTDGIGLAIARRLAQD--G-AHVVVSSR-KQENVDRTVATLQGEGL---SVTG 53 usage_00123.pdb 1 KVALVTASTDGIGFAIARRLAQD--G-AHVVVSSR-KQQNVDQAVATLQGEGL---SVTG 53 usage_00125.pdb 1 KCALVTGSSRGVGKAAAIRLAEN--G-YNIVINYARSKKAALETAEEIEKLGV---KVLV 54 a T GiG a A A g g usage_00022.pdb 54 VVCDVRHLDEMVRLADEAFRLLGGVDVVFSNAGI--V-VAGPLAQM-NHDDWR--WVIDI 107 usage_00038.pdb 59 LQLDVRDSKSVAAARERV--TEGRVDVLVCNAGL--G-LLGPLEAL-GEDAVA--SVLDV 110 usage_00051.pdb 57 VVADVTTDAGQDEILSTTLGKFGKLDILVNNAG------------Q-SIESYD--ATLNL 101 usage_00087.pdb 54 TVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAV--NPFFGNIIDA-TEEVWD--KILHV 108 usage_00088.pdb 54 TVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAV--NPFFGNIIDA-TEEVWD--KILHV 108 usage_00089.pdb 54 TVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAV--NPFFGNIIDA-TEEVWD--KILHV 108 usage_00123.pdb 54 TVCHVGKAEDRERLVATAVKLHGGIDILVSNAAV--NPFFGSIMDV-TEEVWD--KTLDI 108 usage_00125.pdb 55 VKANVGQPAKIKEMFQQIDETFGRLDVFVNNA-ASGV--LRP---VMELEETHWDWTMNI 108 V G D v NA usage_00022.pdb 108 DLWGSIHAVEAFLPRLLEQGTGGHIAFTAS-FA-GLVPNAGLGTYG-----VAKYGVVGL 160 usage_00038.pdb 111 NVVGTVRMLQAFLPDMKRRG-SGRVLVTGS-VG-GLMGLPFNDVYC-----ASKFALEGL 162 usage_00051.pdb 102 NLRSVIALTKKAVPHLSST--KGEIVNISS-IASGLHATPDFPYYS-----IAKAAIDQY 153 usage_00087.pdb 109 NVKATVLMTKAVVPEMEKRG-GGSVLIVSS-VG-AYHPFPNLGPYN-----VSKTALLGL 160 usage_00088.pdb 109 NVKATVLMTKAVVPEMEKRG-GGSVLIVSS-VG-AYHPFPNLGPYN-----VSKTALLGL 160 usage_00089.pdb 109 NVKATVLMTKAVVPEMEKRG-GGSVLIVSS-VG-AYHPFPNLGPYN-----VSKTALLGL 160 usage_00123.pdb 109 NVKAPALMTKAVVPEMEKRG-GGSVVIVSS-IA-AFSPSPGFSPYN-----VSKTALLGL 160 usage_00125.pdb 109 NAKALLFCAQEAAKLMEKNG-GGHIVSISSLG-----SIRYL-ENYTTVGV-SKAALEAL 160 n p G S y K a l usage_00022.pdb 161 AETLAREVKPNGIGVSVLCPMV-VETKLVSNSER----I------R-------------- 195 usage_00038.pdb 163 CESLAVLLLPFGVHLSLIECGP-VHT--EVLDRTDIHTFHRFYQYL-A-LSKQVFR---- 213 usage_00051.pdb 154 TRNTAIDLIQHGIRVNSISPGL-VAT--------------------GFYSTMATMKECVP 192 usage_00087.pdb 161 TKNLAVELAPRNIRVNCLAPGL-IKTNFSQVLWM-----------D-K-ARKEYMKESLR 206 usage_00088.pdb 161 TKNLAVELAPRNIRVNCLAPGL-IKTNFSQVLWM-----------D-K-ARKEYMKESLR 206 usage_00089.pdb 161 TKNLAVELAPRNIRVNCLAPGL-IKTNFSQVLWM-----------D-K-ARKEYMKESLR 206 usage_00123.pdb 161 TKTLAIELAPRNIRVNCLAPGL-IKTSFSRMLWM-----------D-K-EKEESMKETLR 206 usage_00125.pdb 161 TRYLAVELSPKQIIVNAVSGGAI---FP-N---------------R-E-DLLEDARQNTP 199 lA l p i v g usage_00022.pdb 196 ---SVSADDVARLTADAIL---A--NRLYILPH-- 220 usage_00038.pdb 214 -EAAQNPEEVAEVFLTALR---APKPTLRYFTT-- 242 usage_00051.pdb 193 AGVMGQPQDIAEVIAFLADRKTSSYIIGHQLV-VD 226 usage_00087.pdb 207 IRRLGNPEDCAGIVSFLCSE-DASYITGETVV-VG 239 usage_00088.pdb 207 IRRLGNPEDCAGIVSFLCSE-DASYITGETVV-VG 239 usage_00089.pdb 207 IRRLGNPEDCAGIVSFLCSE-DASYITGETVV-VG 239 usage_00123.pdb 207 IRRLGEPEDCAGIVSFLCSE-DASYITGETVV-VG 239 usage_00125.pdb 200 AGRMVEIKDMVDTVEFLVSS-KADMIRGQTII-VD 232 d a a #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################