################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:18:29 2021 # Report_file: c_1250_89.html ################################################################################################ #==================================== # Aligned_structures: 5 # 1: usage_00899.pdb # 2: usage_00900.pdb # 3: usage_00902.pdb # 4: usage_00906.pdb # 5: usage_01259.pdb # # Length: 52 # Identity: 1/ 52 ( 1.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 21/ 52 ( 40.4%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 31/ 52 ( 59.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00899.pdb 1 HPTYLIWSAN----TSL--GKTLVSTGIAASFLLQQPSSSA---TKLLYL-- 41 usage_00900.pdb 1 HPTYLIWSAN----TSL--GKTLVSTGIAASFLLQQS--ATKLL----YL-- 38 usage_00902.pdb 1 HPTYLIWSAN----TSL--GKTLVSTGIAASFLLQ---S-A---TKLLYL-- 37 usage_00906.pdb 1 HPTYLIWSAN----TSL--GKTLVSTGIAASFLLQQPSSSA---TKLLYL-- 41 usage_01259.pdb 1 ---DMVFAGVQSSDQAYASTGISVASYLN------------WPH----A-AV 32 yliwsan tsl gktlVstgia y #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################