################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:25:47 2021 # Report_file: c_0713_14.html ################################################################################################ #==================================== # Aligned_structures: 15 # 1: usage_00042.pdb # 2: usage_00066.pdb # 3: usage_00086.pdb # 4: usage_00088.pdb # 5: usage_00089.pdb # 6: usage_00101.pdb # 7: usage_00102.pdb # 8: usage_00119.pdb # 9: usage_00126.pdb # 10: usage_00127.pdb # 11: usage_00195.pdb # 12: usage_00196.pdb # 13: usage_00235.pdb # 14: usage_00268.pdb # 15: usage_00269.pdb # # Length: 72 # Identity: 3/ 72 ( 4.2%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 6/ 72 ( 8.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 30/ 72 ( 41.7%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00042.pdb 1 RG-LNRVFLIGALATRPD-RYTPAGLAILDLTLAGQDLL--------REVSWYHRVRLL- 49 usage_00066.pdb 1 ----NKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLF- 55 usage_00086.pdb 1 --RGNHVYLIGALARDPELRYTGNG-AVFEATVAGEDRV--------RNLPWYHRVSIL- 48 usage_00088.pdb 1 ----NKVILVGNLGQDPEVRYMPNGGAVANITLATSESW---------EQTEWHRVVLF- 46 usage_00089.pdb 1 RG-VNKVILVGNLGQDPEVR------AVANITLATSESW---------EQTEWHRVVLF- 43 usage_00101.pdb 1 -M-FNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQ-DGTLGEEVCFIDARLF- 56 usage_00102.pdb 1 -M-FNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQ-DGTLGEEVCFIDARLF- 56 usage_00119.pdb 1 -G-LNQVFLIGTLTARPDMRYTPGGLAILDLNLAGQDAFTDE-SGQEREVPWYHRVRLL- 56 usage_00126.pdb 1 -G-VNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLF- 57 usage_00127.pdb 1 ----NKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLF- 55 usage_00195.pdb 1 ----NKVMLIGYLGDDPESKTMTSGAEVVNFRMATFE------------KTEWHSVVVFN 44 usage_00196.pdb 1 ----NKVMLIGYLGDDPESKTMTSGAEVVNFRMATFE-----------EKTEWHSVVVFN 45 usage_00235.pdb 1 KS-VNSVTLVGVVHDIQ-SGFVYE-DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCF- 56 usage_00268.pdb 1 RG-VNKVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQTGELQERTEWHRIAFF- 58 usage_00269.pdb 1 ----NKVILIGNLGQDPEVRYTPNGNAVANVTLATSTT----------ERTEWHRIAFF- 45 N V G l a usage_00042.pdb 50 G-RQAEWG---- 56 usage_00066.pdb 56 G-KLAEVASE-- 64 usage_00086.pdb 49 G-KPAEWQAER- 58 usage_00088.pdb 47 G-KLAEVASE-- 55 usage_00089.pdb 44 G-KLAEVASE-- 52 usage_00101.pdb 57 G-RTAEIANQ-- 65 usage_00102.pdb 57 G-RTAEIANQ-- 65 usage_00119.pdb 57 G-RQAEMW---- 63 usage_00126.pdb 58 G-KLAEVASE-- 66 usage_00127.pdb 56 G-KLAEVASE-- 64 usage_00195.pdb 45 P-HFAKIALQ-- 53 usage_00196.pdb 46 P-HFAKIALQYL 56 usage_00235.pdb 57 GELFSAEVKQ-- 66 usage_00268.pdb 59 N-RLAEIVGE-- 67 usage_00269.pdb 46 N-RLAEIVGE-- 54 a #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################