################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:58:22 2021 # Report_file: c_1157_43.html ################################################################################################ #==================================== # Aligned_structures: 8 # 1: usage_00022.pdb # 2: usage_00113.pdb # 3: usage_00114.pdb # 4: usage_00117.pdb # 5: usage_00118.pdb # 6: usage_00119.pdb # 7: usage_00120.pdb # 8: usage_00121.pdb # # Length: 48 # Identity: 11/ 48 ( 22.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 15/ 48 ( 31.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 21/ 48 ( 43.8%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00022.pdb 1 YAVGITGEDAQLFTAVRRSV-TVD------GVATDIGLVGDVDQVN-- 39 usage_00113.pdb 1 RAVGICGKDSKLIVAEKETKH------------GDIGYVGKVKKVNPE 36 usage_00114.pdb 1 RAVGICGKDSKLIVAEKETKH------------GDIGYVGKVKKVNP- 35 usage_00117.pdb 1 SAIGLTGKDAELIRAKKLTV-TRQ-E-MTKPEIIDIGHVGEVTGVNVG 45 usage_00118.pdb 1 SAIGLTGKDAELIRAKKLTV-TRQTPEMTKPEIIDIGHVGEVTGVNV- 46 usage_00119.pdb 1 SAIGLTGKDAELIRAKKL------------------GHVGEVTGVNVG 30 usage_00120.pdb 1 SAIGLTGKDAELIRAKKL------------------T-VGEVTGVNVG 29 usage_00121.pdb 1 SAIGLTGKDAELIRAKKLTV-TRQ-----KPEIIDIGHVGEVTGVNVG 42 A G GkD Li A k g VG V VN #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################