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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Thu Jan 21 00:15:44 2021
# Report_file: c_0204_3.html
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#====================================
# Aligned_structures: 10
#   1: usage_00002.pdb
#   2: usage_00008.pdb
#   3: usage_00013.pdb
#   4: usage_00014.pdb
#   5: usage_00024.pdb
#   6: usage_00025.pdb
#   7: usage_00026.pdb
#   8: usage_00027.pdb
#   9: usage_00031.pdb
#  10: usage_00032.pdb
#
# Length:        257
# Identity:       64/257 ( 24.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     64/257 ( 24.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           86/257 ( 33.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00002.pdb         1  NYLEVCYILLNGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGA   60
usage_00008.pdb         1  NYLEVCYILLNGEKPTQEQYDEFKTTVTLHTMIHEQITRLFHAFRRDSHPMAVMCGITGA   60
usage_00013.pdb         1  NYLEVCYILLNGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGA   60
usage_00014.pdb         1  -YLEVCYILLNGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGA   59
usage_00024.pdb         1  -YEEVIYLLLNGELPNKAQYDTFTNTLTNHTLLHEQIRNFFNGFRRDAHPMAILCGTVGA   59
usage_00025.pdb         1  -YEEVIYLLLNGELPNKAQYDTFTNTLTNHTLLHEQIRNFFNGFRRDAHPMAILCGTVGA   59
usage_00026.pdb         1  -YEEVIYLLLNGELPNKAQYDTFTNTLTNHTLLHEQIRNFFNGFRRDAHPMAILCGTVGA   59
usage_00027.pdb         1  -YEEVIYLLLNGELPNKAQYDTFTNTLTNHTLLHEQIRNFFNGFRRDAHPMAILCGTVGA   59
usage_00031.pdb         1  -YRTLCYALIYGELPTDEQVKSFRQEIINKMPVCEHVKAAIAAMPQHTHPMSSLIAGVNV   59
usage_00032.pdb         1  -YRTLCYALIYGELPTDEQVKSFRQEIINKMPVCEHVKAAIAAMPQHTHPMSSLIAGVNV   59
                            Y    Y L  GE P   Q   F           E             HPM         

usage_00002.pdb        61  LAAFYHDSLDVNNPR------HREIAAFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSYA  114
usage_00008.pdb        61  LAAFYHDSLDVNNPR------HREIAAFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSYA  114
usage_00013.pdb        61  LAAFYHDSLDVNNPR------HREIAAFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSYA  114
usage_00014.pdb        60  LAAFYHDSLDVNNPR------HREIAAFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSYA  113
usage_00024.pdb        60  LSAFYP--------A------NRDLAAMRLIAKIPTIAAWAYKYTQGEAFIYPRNDLNYA  105
usage_00025.pdb        60  LSAFYPDANDIAIPA------NRDLAAMRLIAKIPTIAAWAYKYTQGEAFIYPRNDLNYA  113
usage_00026.pdb        60  LSAFYP---------------NRDLAAMRLIAKIPTIAAWAYKYTQGEAFIYPRNDLNYA  104
usage_00027.pdb        60  LSAFYPD------PA------NRDLAAMRLIAKIPTIAAWAYKYTQGEAFIYPRNDLNYA  107
usage_00031.pdb        60  LAAEHI---------HNGQKESQDEVAKNIVAKIATIAAMAYRHNHGKKFLEPKMEYGYA  110
usage_00032.pdb        60  LAAEHI---------HNGQKESQDEVAKNIVAKIATIAAMAYRHNHGKKFLEPKMEYGYA  110
                           L A                       A     K  T AA  Y    G  F  P     YA

usage_00002.pdb       115  GNFLNMMFSTPCE-PYEVNPILERAMDRILILHADHEQNASTSTVRTAGSSGANPFACIA  173
usage_00008.pdb       115  GNFLNMMFSTPCE-PYEVNPILERAMDRILILHADHEQNASTSTVRTAGSSGANPFACIA  173
usage_00013.pdb       115  GNFLNMMFSTPCE-PYEVNPILERAMDRILILHADHEQNASTSTVRTAGSSGANPFACIA  173
usage_00014.pdb       114  GNFLNMMFSTPCE-PYEVNPILERAMDRILILHADHEQNASTSTVRTAGSSGANPFACIA  172
usage_00024.pdb       106  ENFLSMMFARMSE-PYKVNPVLARAMNRILILHADHEQNASTSTVRLAGSTGANPFACIA  164
usage_00025.pdb       114  ENFLSMMFARMSE-PYKVNPVLARAMNRILILHADHEQNASTSTVRLAGSTGANPFACIA  172
usage_00026.pdb       105  ENFLSMMFARMSE-PYKVNPVLARAMNRILILHADHEQNASTSTVRLAGSTGANPFACIA  163
usage_00027.pdb       108  ENFLSMMFARMSE-PYKVNPVLARAMNRILILHADHEQNASTSTVRLAGSTGANPFACIA  166
usage_00031.pdb       111  ENFLYMMFADD--ESYKPDELHIKAMDTIFMLHADHEQNASTSTVRLSGSTGNSPYAAII  168
usage_00032.pdb       111  ENFLYMMFADD--ESYKPDELHIKAMDTIFMLHADHEQNASTSTVRLSGSTGNSPYAAII  168
                            NFL MMF       Y        AM  I  LHADHEQNASTSTVR  GS G  P A I 

usage_00002.pdb       174  AGIASLWGPAHGGA--------------NEAA--------------L-------------  192
usage_00008.pdb       174  AGIASLWGPAHGGANEAALKMLEEIS-SVKHIPEFFRRAKDKNDSFRLMGFGHRVYKNYD  232
usage_00013.pdb       174  AGIASLWGPAHGGANEAALKMLEEIG-KKENIPE------------FVRR----------  210
usage_00014.pdb       173  AGIASLWGPAHGGANEAALKMLE-------------------------------------  195
usage_00024.pdb       165  AGIAALWGPA-------HGGANEAVLKMLARIGKKENI--------PAFI----------  199
usage_00025.pdb       173  AGIAALWGPA-------HGGANEAVLKMLARIGKKENI--------PAFI----------  207
usage_00026.pdb       164  AGIAALWGPA-------HGGANEAVLKMLARIGKKENI--------PAFI----------  198
usage_00027.pdb       167  AGIAALWGPA-------HGGANEAVLKMLARIGKKENI--------PAFI----------  201
usage_00031.pdb       169  AGITALWGPA-------HGGANEAVLKMLSEIGSTENI--------DKYI----------  203
usage_00032.pdb       169  AGITALWGPA-------HGGANEAVLKMLSEI----------------------------  193
                           AGI  LWGPA                                                  

usage_00002.pdb            -----------------     
usage_00008.pdb       233  PRATVMRETCHEVLKEL  249
usage_00013.pdb       211  ---AKD-----------  213
usage_00014.pdb            -----------------     
usage_00024.pdb       200  ---AQVKD---------  204
usage_00025.pdb       208  ---AQVKD---------  212
usage_00026.pdb       199  ---AQVK----------  202
usage_00027.pdb       202  ---AQVKD---------  206
usage_00031.pdb       204  ---AKAKD--------K  209
usage_00032.pdb            -----------------     
                                            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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