################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 05:29:50 2021 # Report_file: c_0118_16.html ################################################################################################ #==================================== # Aligned_structures: 40 # 1: usage_00004.pdb # 2: usage_00071.pdb # 3: usage_00167.pdb # 4: usage_00191.pdb # 5: usage_00193.pdb # 6: usage_00230.pdb # 7: usage_00231.pdb # 8: usage_00241.pdb # 9: usage_00248.pdb # 10: usage_00249.pdb # 11: usage_00252.pdb # 12: usage_00253.pdb # 13: usage_00277.pdb # 14: usage_00278.pdb # 15: usage_00279.pdb # 16: usage_00292.pdb # 17: usage_00321.pdb # 18: usage_00332.pdb # 19: usage_00335.pdb # 20: usage_00336.pdb # 21: usage_00341.pdb # 22: usage_00366.pdb # 23: usage_00428.pdb # 24: usage_00440.pdb # 25: usage_00441.pdb # 26: usage_00452.pdb # 27: usage_00453.pdb # 28: usage_00468.pdb # 29: usage_00470.pdb # 30: usage_00471.pdb # 31: usage_00499.pdb # 32: usage_00508.pdb # 33: usage_00509.pdb # 34: usage_00525.pdb # 35: usage_00526.pdb # 36: usage_00527.pdb # 37: usage_00528.pdb # 38: usage_00537.pdb # 39: usage_00554.pdb # 40: usage_00555.pdb # # Length: 153 # Identity: 32/153 ( 20.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 46/153 ( 30.1%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 53/153 ( 34.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00004.pdb 1 QVQLVESGGGSVQAGGSLRLSCSASG-----Y--T-YISGWFRQAPGKGLEWVAAIRS-- 50 usage_00071.pdb 1 --QLQESGGGLVQAGGSLRLSCAASG-R---TL-SSYAMGWFRQAPGKEREFVAAINR-- 51 usage_00167.pdb 1 -VQLQESGGGLVQAGGSLRLSCAAS---------STYDMGWFRQAPGKERESVAAINW-- 48 usage_00191.pdb 1 --QLQESGGGLVQAGGSLRLSCAASG-R---TG-STYDMGWFRQAPGKERESVAAINW-- 51 usage_00193.pdb 1 -VQLVESGGGLVQPGGSLRLHCAASG-S---IA-SIYRTCWYRQGTGKQRELVAAITS-- 52 usage_00230.pdb 1 -VQLQESGGGLVQAGGSLRLSCAAAG-R---NL-RMYRMGWFRQAPGKEREFVGTMVW-- 52 usage_00231.pdb 1 --QLQESGGGLVQAGGSLRLSCAA----------S-FAMGWFRQAPGKEREFVASISR-- 45 usage_00241.pdb 1 QVQLQESGGGLVQAGDSLRLSCAASG-FDFDNF-DDYAIGWFRQAPGQEREGVSCIDP-- 56 usage_00248.pdb 1 -VQLQESGGGLVQAGGSLRLSCAASG-G---TFST-YGMGWFRQAPGKEREFVAASSW-- 52 usage_00249.pdb 1 -VQLQESGGGLVQAGGSLRLSCAASG-G---TFST-YGMGWFRQAPGKEREFVAASSW-- 52 usage_00252.pdb 1 --QLVESGGGLAQAGGSLRLSCAASG-R---TF-SMDPMAWFRQPPGKEREFVAAGSS-- 51 usage_00253.pdb 1 -VQLVESGGGLVQAGGSLRLSCAASG-L---TF-SRYVMGWFRQAPGKEREFVAAITW-- 52 usage_00277.pdb 1 --QLQESGGGLVPAGGSLRLSCVDSGRT---F-SS-TVMAWFRQAPGKEREFVATIRW-- 51 usage_00278.pdb 1 --QLQESGGGLVPAGGSLRLSCVDSGRT---F-SS-TVMAWFRQAPGKEREFVATIRW-- 51 usage_00279.pdb 1 --QLQESGGGLVPAGGSLRLSCVDSGR----F-SS-TVMAWFRQAPGKEREFVATIRW-- 50 usage_00292.pdb 1 --QLVESGGGLVQAGGSLRLFCAASG-F---TF-GTSNMAWLRQAPGKRREWVALITI-- 51 usage_00321.pdb 1 QVQLVESGGGLVQAGGSLRLSCAASG-Y---PH-PYLHMGWFRQAPGKEREGVAAMDS-- 53 usage_00332.pdb 1 QVQLVESGGGPVEAGGSLRLSCAASG-R---SF-SNSVMAWFRQAPGKEREFLSVLNW-- 53 usage_00335.pdb 1 DVQLVESGGGSVQAGGSLRLSCAASG-S---TDSI-EYMTWFRQAPGKAREGVAALYT-- 53 usage_00336.pdb 1 -VQLVESGGGLAQPGGSLRLSCAASG-S---TI-SSVAVGWYRQTPGNQREWVATSST-- 52 usage_00341.pdb 1 EVQLVESGGGLVQPGGSLRLSCAASG-S---IS-SVDVMSWYRQAPGKQRELVAFITD-- 53 usage_00366.pdb 1 -VQLQESGGGLVQPGGSLRLSCAASG-S---IF-SGNVMGWYRQAPGKLREWVAAITP-- 52 usage_00428.pdb 1 --QLVESGGGSVQAGGSLRLSCTASG-G--SSY-STFSLGWFRQAPGQEREAVAAIAS-- 52 usage_00440.pdb 1 --QLQESGGGLVQAGGSLRLSCAASG-S---IF-SPNAMGWYRQAPGKERELVAARTN-- 51 usage_00441.pdb 1 --QLQESGGGLVQPGGSLRLSCAASG-S---IF-SGNAMGWYRQAPGKQRELVAAITS-- 51 usage_00452.pdb 1 --QLQESGGGLVQAGGSLRLSCTASG-R---TF-SSYAMGWFRQTPGKEREFVAAITW-- 51 usage_00453.pdb 1 --QLQESGGGLVQAGGSLRLSCTASV-N---II-GGNHWAWYRQAPGQQRDLVASLS--- 50 usage_00468.pdb 1 --QLQESGGGLVQAGGSLRLSCTASG-R---IS-SSYDMGWFRQAPGKEREFVAAISW-- 51 usage_00470.pdb 1 QVQLQESGGGLVQAGGSLRLSCAASG-S---IF-SLNDMGWYRQAPGKLRELVAAITS-- 53 usage_00471.pdb 1 QVQLQESGGGLVQAGGSLRLSCAASG-S---IF-SLNDMGWYRQAPGKLRELVAAITS-- 53 usage_00499.pdb 1 KVQLQQSGGGAVQTGGSLKLTCLASG-N---TA-SIRAMGWYRRAPGKQREWVASLTT-- 53 usage_00508.pdb 1 -VQLVESGGGLVQAGGSLRLSCAASG-F---TF-EDYAIGWFRQAPGKEREGVSCISN-- 52 usage_00509.pdb 1 -VQLVESGGGLVQAGGSLRLSCAASG-F---TF-EDYAIGWFRQAPGKEREGVSCISN-- 52 usage_00525.pdb 1 AVQLQESGGGLVQAGGSLRLSCTVSA-R---TS-SSHDMGWFRQAPGKEREFVAAISW-- 53 usage_00526.pdb 1 --QLVESGGGLAQAGGSLRLSCAASG-R---TF-SMDPMAWFRQPPGKEREFVAAGSS-- 51 usage_00527.pdb 1 --QLVESGGGLAQAGGSLRLSCAASG-R---TF-SMDPMAWFRQPPGKEREFVAAGSS-- 51 usage_00528.pdb 1 --QLVESGGGLAQAGGSLRLSCAASG-R---TF-SMDPMAWFRQPPGKEREFVAAGSS-- 51 usage_00537.pdb 1 DVQLVESGGGLVQPGGSLRLSCAYSG-S---LF-SILRMDWYRQAPGKERELVAGITRDA 55 usage_00554.pdb 1 --QLQESGGGLVQAGGSLRLSCAASG-F---TL-DSYAIGWFRQAPGKEREGVSCISA-- 51 usage_00555.pdb 1 --QLQESGGGLVQPGGSLRLSCAASG-S---IF-SGNAMGWYRQAPGKQRELVAAITS-- 51 QL eSGGG GgSLrL C W Rq pG re v usage_00004.pdb 51 --SDGTTYYADSVKGRFTISQDNAKNTVYLQMNSLKPEDTAMYYCAATEVA------GW- 101 usage_00071.pdb 52 ---SGSTFYADAVKGRFTISRDNAKNTVYLQMNSLKPEDTAAYYCAADRFS--PVV-PG- 104 usage_00167.pdb 49 --GSAGTYYASSVRGRFTISRDNAKKTVYLQMNSLKPEDTAVYTCGAGRI---------- 96 usage_00191.pdb 52 --DSARTYYASSVRGRFTISRDNAKKTVYLQMNSLKPEDTAVYTCGAGEGG--------- 100 usage_00193.pdb 53 ---GGNTYYADSVKGRFTISRDNAKNTIDLQMNSLKPEDTAVYYCNADEAG---I--G-- 102 usage_00230.pdb 53 --SSDTIYYADSVKGRFIISRDNAKNTVYLQMNSLKPEDTAVYYCAAGAGW--AG----- 103 usage_00231.pdb 46 --SGTLTRYADSAKGRFTISVDNAKNTVSLQMDNLNPDDTAVYYCAADLHR-PY---GPG 99 usage_00241.pdb 57 --SDGSTIYADSAKGRFTISSDNAENTVYLQMNSLKPEDTAVYVCSAWTL-------F-- 105 usage_00248.pdb 53 --TGANTYYADSVRGRFTISRDNAKNTVYLEMNSLKPEDTAVYYCAARRWL--G---GS- 104 usage_00249.pdb 53 --TGANTYYADSVRGRFTISRDNAKNTVYLEMNSLKPEDTAVYYCAARRWL--G---GS- 104 usage_00252.pdb 52 --TGRTTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAAA-PY---G--AN- 102 usage_00253.pdb 53 ---GGTPNYADSVKGRFTISRDNSKNTQYLQMNSLKPEDTAVYYCAAGLGW--D------ 101 usage_00277.pdb 52 --SGGNTYYADSVKGRFTISRDNARNTVYLQMNSLKPEDTAVYYCAGGTYY--------- 100 usage_00278.pdb 52 --SGGNTYYADSVKGRFTISRDNARNTVYLQMNSLKPEDTAVYYCAGGTYY--------- 100 usage_00279.pdb 51 --SGGNTYYADSVKGRFTISRDNARNTVYLQMNSLKPEDTAVYYCAGGTYY--------- 99 usage_00292.pdb 52 ---SGYTDYADSVKDRFTISRDNAKNTVSLQMNSLKPEDTAIYFCARRVGS--------- 99 usage_00321.pdb 54 --GGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPEDTATYYCAAGG---------Y- 101 usage_00332.pdb 54 --SSGRTSIADSVKGRFTMSRDPAKITVYLQMNGLKPEDTAVYYCAASNRG--SL--YT- 106 usage_00335.pdb 54 --HTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSEDTAIYTCGATRKY--VPV-RF- 107 usage_00336.pdb 53 --SSTTATYADSVKGRFTISRDNAKNTIYLQMNSLKPEDTAVYYCKTG------------ 98 usage_00341.pdb 54 ---RGRTNYKVSVKGRFTISRDNSKNMVYLQMNSLKPEDTADYLCRAESRT---S-WS-- 104 usage_00366.pdb 53 ---QGVPNYADSVKGRFTISRDNAKNMLYLQMSSLKPEDTALYYCNRLP----------- 98 usage_00428.pdb 53 --MGGLTYYADSVKGRFTISRDNAKNTVTLQMNNLKPEDTAIYYCAAVRGY--F---MR- 104 usage_00440.pdb 52 ---V-GSTYADSVKGRFTVSRDNAKNTVYLQMNSLKPEDTAVYYCNAWGQD---G--W-- 100 usage_00441.pdb 52 ---GGSTDYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCHVDP-R---P--W-- 100 usage_00452.pdb 52 --GGSTTLYADSVKGRFTMSRDNAKNTVYLQMNSLKPEDTAVYYCAADGS---QY--RS- 103 usage_00453.pdb 51 ---RYNANYADSVKGRFTISRDNAKNAAYLQMNSLKPEDTAIYFCALE------------ 95 usage_00468.pdb 52 --SGGTTDYADSVKGRFAISKDNAKNAVYLQMNSLKPEDTAVYYCAAKWRP--LR--YS- 104 usage_00470.pdb 54 ---GGSTKYADSVKGRFTISRDNAKNTVYLQMNSLKAEDTAVYYCNAKVAG---T--F-- 103 usage_00471.pdb 54 ---GGSTKYADSVKGRFTISRDNAKNTVYLQMNSLKAEDTAVYYCNAKVAG---T--F-- 103 usage_00499.pdb 54 ---TGTADYGDFVKGRFTISRDNANNAATLQMDSLKPEDTAVYYCNADGRRFD-G--A-- 105 usage_00508.pdb 53 --LDGSTYYPDSVKGRFTASSDKAKNMVYLQMNSLKPEDTAVYYCAAVNAQ--GI----- 103 usage_00509.pdb 53 --LDGSTYYPDSVKGRFTASSDKAKNMVYLQMNSLKPEDTAVYYCAAVNAQ--GI----- 103 usage_00525.pdb 54 --SGGTTNYVDSVKGRFDISKDNAKNAVYLQMNSLKPEDTAVYYCAAKWRP--LR--YS- 106 usage_00526.pdb 52 --TGRTTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAAA-PY---G--AN- 102 usage_00527.pdb 52 --TGRTTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAAA-PY---G--AN- 102 usage_00528.pdb 52 --TGRTTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAAA-PY---G--AN- 102 usage_00537.pdb 56 AGYADSTNYADSVKGRFTISRDSAKNTVYLQMNSLKPEDTAVYYCNADART---I--T-- 108 usage_00554.pdb 52 --SGGSTNYADSVKGRFTISRDNAKNTVYLQMNSLKSEDTAVYYCAAD-HP---G--LC- 102 usage_00555.pdb 52 ---GGSTDYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCHVDP-R---P--W-- 100 y gRF S D L M lk eDTA Y C usage_00004.pdb 102 P-L-DI------G-----IYDYWGQGTQVTVS- 120 usage_00071.pdb 105 P-I-PV------N-----TVDSWGQGTQVTVSS 124 usage_00167.pdb 97 -----E------S-----WVTWWGQGTQVTVS- 112 usage_00191.pdb 101 ------------------TWDSWGQGTQVTVS- 114 usage_00193.pdb 103 --G---------------FNDYWGQGTQVTV-- 116 usage_00230.pdb 104 -------TM---T-----DYNYWGQGTQVTVS- 120 usage_00231.pdb 100 T-Q-RS------D-----EYDSWGQGTQVTVS- 118 usage_00241.pdb 106 --H---------------SDEYWGQGTQVTV-- 119 usage_00248.pdb 105 Y-F-DP------G-----NYDFWGQGTQVTVS- 123 usage_00249.pdb 105 Y-F-DP------G-----NYDFWGQGTQVTVS- 123 usage_00252.pdb 103 W-Y-R-------D-----EYAYWGQGTQVTVS- 120 usage_00253.pdb 102 S-R-YS------Q-----SYNYWGQGTQVTVS- 120 usage_00277.pdb 101 G-T-LS------Y-----KYDFWGRGTQVTVS- 119 usage_00278.pdb 101 G-T-LS------Y-----KYDFWGRGTQVTVS- 119 usage_00279.pdb 100 G-T-LS------Y-----KYDFWGRGTQVTVS- 118 usage_00292.pdb 100 ------------------EYDLWGQGTQVTVS- 113 usage_00321.pdb 102 Q-L-RD------R-----TYGHWGQGTQVTV-- 119 usage_00332.pdb 107 L-D-NQ------N-----RYEDWGQGTQVTV-- 124 usage_00335.pdb 108 A-L-DQ------S-----SYDYWGQGTQVTV-- 125 usage_00336.pdb 99 -------------------LTNWGRGTQVTVS- 111 usage_00341.pdb 105 SPS---------------PLDVWGRGTQVTV-- 120 usage_00366.pdb 99 ------------------NYRSWGQGTQVTVS- 112 usage_00428.pdb 105 L-P-SS------H-----NFRYWGQGTQVTVS- 123 usage_00440.pdb 101 L-G---------------QYDYWGQGTQVTVS- 116 usage_00441.pdb 101 G-Y-DV------T-----DYDYWGQGTQVTV-- 118 usage_00452.pdb 104 T-Y-SFR---DKP-----DYGSWGQGTQVTVS- 125 usage_00453.pdb 96 -------------------NYYWGQGTQVTVS- 108 usage_00468.pdb 105 D-YPSN------S-----DYYDWGQGTQVTVS- 124 usage_00470.pdb 104 --S---------------IYDYWGQGTQVTV-- 117 usage_00471.pdb 104 --S---------------IYDYWGQGTQVTV-- 117 usage_00499.pdb 106 RWR---------------EYESWGQGTQVTIS- 122 usage_00508.pdb 104 Y-C-TDYIIGP-Y-----GMDYWGKGTQVTV-- 126 usage_00509.pdb 104 Y-C-TDYIIGP-Y-----GMDYWGKGTQVTVS- 127 usage_00525.pdb 107 D-NPSN------S-----DYNYWGQGTQVTVS- 126 usage_00526.pdb 103 W-Y-R-------D-----EYAYWGQGTQVTVS- 120 usage_00527.pdb 103 W-Y-R-------D-----EYAYWGQGTQVTVS- 120 usage_00528.pdb 103 W-Y-R-------D-----EYAYWGQGTQVTVS- 120 usage_00537.pdb 109 --G---------------RADYWGQGTQVTVS- 123 usage_00554.pdb 103 ---TS-------ESGRRRYLEVWGQGTQVTV-- 123 usage_00555.pdb 101 G-Y-DV------T-----DYDYWGQGTQVTV-- 118 WG GTQVTv #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################