################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:47:45 2021 # Report_file: c_1104_7.html ################################################################################################ #==================================== # Aligned_structures: 12 # 1: usage_00359.pdb # 2: usage_00378.pdb # 3: usage_00395.pdb # 4: usage_00517.pdb # 5: usage_00518.pdb # 6: usage_00519.pdb # 7: usage_00520.pdb # 8: usage_00521.pdb # 9: usage_00709.pdb # 10: usage_00710.pdb # 11: usage_00875.pdb # 12: usage_00876.pdb # # Length: 118 # Identity: 0/118 ( 0.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 7/118 ( 5.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 51/118 ( 43.2%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00359.pdb 1 ---SEQQDLDDLAQVILSAVTSNTDTS-----KSARAQALSTALASSLADLLIS-----E 47 usage_00378.pdb 1 NPGLAENFMNSFMQGLSSMP------GFTASQLDDMSTIAQSMVQSIQSLAAQG-----R 49 usage_00395.pdb 1 NPNAAMTMTNNLVQCASRSG------VL----TADQMDDMGMMADSVNSQMQKMG---PN 47 usage_00517.pdb 1 -PGLAENFMNSFMQGLSSMP------GF----TASQLDDMSTIAQSMVQSIQSLAAQG-R 48 usage_00518.pdb 1 NPGLAENFMNSFMQGLSSMP------GF----TASQLDNMSTIAQSMVQSIQSLAAQG-R 49 usage_00519.pdb 1 -PGLAENFMNSFMQGLSSMP------GF----TASQLDNMSTIAQSMVQSIQSLAAQG-R 48 usage_00520.pdb 1 -PGLAENFMNSFMQGLSSMP------GF----TASQLDNMSTIAQSMVQSIQSLAAQG-R 48 usage_00521.pdb 1 NPGLAENFMNSFMQGLSSMP------GF----TASQLDNMSTIAQSMVQSIQSLAAQG-R 49 usage_00709.pdb 1 STELADAFINAFMNEAGRTG------AF----TADQLDDMSTIGDTIKTAMDKMARSN-K 49 usage_00710.pdb 1 -TELADAFINAFMNEAGRTG------AF----TADQLDDMSTIGDTIKTAMDKMARSN-K 48 usage_00875.pdb 1 -PGLAENFMNSFMQGLSSMP------GF----TASQLDDMSTIAQSMVQSIQSLAAQG-R 48 usage_00876.pdb 1 -PGLAENFMNSFMQGLSSMP------GF----TASQLDDMSTIAQSMVQSIQSLAAQG-R 48 a n usage_00359.pdb 48 SSGSS-------YQTQISALTN-ILSD-CFVTTTGSNN-------PAFVSRVQT---- 85 usage_00378.pdb 50 TSPNKLQALNMRFASSMAEIAA-SEE-----GGGSL--STKTSSIASAMSNAFLQT-- 97 usage_00395.pdb 48 PPQHRLRAMNTAMAAEVAEVVA-TSPPQ------SY--SAVLNTIGACLRESMMQA-- 94 usage_00517.pdb 49 TSPNKLQALNMAFASSMAQIAA-SEE-----GGGSL--STKTSSIASAMSNAFLQTTG 98 usage_00518.pdb 50 TSPNKLQALNMAFASSMAEIAA-SEE-----GGGSL--STKTSSIASAMSNAFLQT-- 97 usage_00519.pdb 49 TSPNKLQALNMAFASSMAEIAA-SEE-----GGGSL--STKTSSIASAMSNAFLQT-- 96 usage_00520.pdb 49 TSPNKLQALNMAFASSMAEIAA-SQE-----GGGSL--STKTSSIASAMSNAFLQ--- 95 usage_00521.pdb 50 TSPNKLQALNMAFASSMAEIAA-SQE-----GGGSL--STKTSSIASAMSNAFLQT-- 97 usage_00709.pdb 50 SSKGKLQALNMAFASSMAEIAA-VEQ-----GGLSV--DAKTNAIADSLNSAFYQTTG 99 usage_00710.pdb 49 SSKGKLQALNMAFASSMAEIAAG----------LSV--DAKTNAIADSLNSAFYQTTG 94 usage_00875.pdb 49 TSPNKLQALNMAFASSMAEIAA-SEE-----GGGSL--STKTSSIASAMSNAFLQT-- 96 usage_00876.pdb 49 TSPNKLQALNMAFASSMAEIAA-SEE-----GGGSL--STKTSSIASAMSNAFLQTTG 98 s a a a s #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################