################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:41:55 2021 # Report_file: c_1372_29.html ################################################################################################ #==================================== # Aligned_structures: 16 # 1: usage_00173.pdb # 2: usage_00174.pdb # 3: usage_00175.pdb # 4: usage_00176.pdb # 5: usage_00177.pdb # 6: usage_00178.pdb # 7: usage_00179.pdb # 8: usage_00180.pdb # 9: usage_00957.pdb # 10: usage_00958.pdb # 11: usage_00959.pdb # 12: usage_00960.pdb # 13: usage_01222.pdb # 14: usage_01223.pdb # 15: usage_01224.pdb # 16: usage_01225.pdb # # Length: 109 # Identity: 45/109 ( 41.3%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 45/109 ( 41.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 64/109 ( 58.7%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00173.pdb 1 -QTKIRVISTILFILAGCIVFVTIPAVIFKYIEGWTALESIYFVVVTLTTVGFGDFVAGG 59 usage_00174.pdb 1 SQTKIRVISTILFILAGCIVFVTIPAVIFKYIEGWTALESIYFVVVTLTTVGFGDFVAGG 60 usage_00175.pdb 1 -----RVISTILFILAGCIVFVTIPAVIFKYIEGWTALESIYFVVVTLTTVGFGDFVA-- 53 usage_00176.pdb 1 -QTKIRVISTILFILAGCIVFVTIPAVIFKYIEGWTALESIYFVVVTLTTVGFGDFVA-- 57 usage_00177.pdb 1 SQTKIRVISTILFILAGCIVFVTIPAVIFKYIEGWTALESIYFVVVTLTTVGFGDFVAGG 60 usage_00178.pdb 1 SQTKIRVISTILFILAGCIVFVTIPAVIFKYIEGWTALESIYFVVVTLTTVGFGDFVAGG 60 usage_00179.pdb 1 -QTKIRVISTILFILAGCIVFVTIPAVIFKYIEGWTALESIYFVVVTLTTVGFGDFVA-- 57 usage_00180.pdb 1 SQTKIRVISTILFILAGCIVFVTIPAVIFKYIEGWTALESIYFVVVTLTTVGFGDFVAGG 60 usage_00957.pdb 1 ----IRVISTILFILAGCIVFVTIPAVIFKYIEGWTALESIYFVVVTLTTVGFGDFVAGG 56 usage_00958.pdb 1 ----------------------TIPAVIFKYIEGWTALESIYFVVVTLTTVGFGDFVAGG 38 usage_00959.pdb 1 ----IRVISTILFILAGCIVFVTIPAVIFKYIEGWTALESIYFVVVTLTTVGFGDFVA-- 54 usage_00960.pdb 1 ----------------------TIPAVIFKYIEGWTALESIYFVVVTLTTVGFGDFVAGG 38 usage_01222.pdb 1 -QTKIRVISTILFILAGCIVFVTIPAVIFKYIEGWTALESIYFVVVTLTTVGFGDFVAGG 59 usage_01223.pdb 1 -QTKIRVISTILFILAGCIVFVTIPAVIFKYIEGWTALESIYFVVVTLTTVGFGDFVAGG 59 usage_01224.pdb 1 -----RVISTILFILAGCIVFVTIPAVIFKYIEGWTALESIYFVVVTLTTVGFGDFVA-- 53 usage_01225.pdb 1 ------VISTILFILAGCIVFVTIPAVIFKYIEGWTALESIYFVVVTLTTVGFGDFVAGG 54 TIPAVIFKYIEGWTALESIYFVVVTLTTVGFGDFVA usage_00173.pdb 60 NAGINYR---EWYK-PLVWFWILVGLAYFAAVLSMIGDWLRVLSKK--- 101 usage_00174.pdb 61 ------R---EWYK-PLVWFWILVGLAYFAAVLSMIGDWLRVLSK---- 95 usage_00175.pdb 54 ------R---EWYK-PLVWFWILVGLAYFAAVLSMIGDWL--------- 83 usage_00176.pdb 58 ------------YK-PLVWFWILVGLAYFAAVLSMIGDWLRVLSK---- 89 usage_00177.pdb 61 NAGINYR---EWYK-PLVWFWILVGLAYFAAVLSMIGDWLRVLSKK--- 102 usage_00178.pdb 61 NAGINYR---EWYK-PLVWFWILVGLAYFAAVLSMIGDWLRV------- 98 usage_00179.pdb 58 ------R---EWYK-PLVWFWILVGLAYFAAVLSMIGDWLR-------- 88 usage_00180.pdb 61 NAGINYR---EWYK-PLVWFWILVGLAYFAAVLSMIGDWLRVL------ 99 usage_00957.pdb 57 NAGINYR---EWYK-PLVWFWILV------------------------- 76 usage_00958.pdb 39 NAGINYR---EWYK-PLVWFWILVGLAYFAAVLSMIGDWLRVLSK---- 79 usage_00959.pdb 55 -------GGNEWYK-PLVWFWILVGLAYFAAVLSMIGDWLRV------- 88 usage_00960.pdb 39 N----YR---EWYK-PLVWFWILV------------------------- 54 usage_01222.pdb 60 ------R---EWYK-PLVWFWILVGLAYFAAVLSMIGDWLRVLS----- 93 usage_01223.pdb 60 NAGINYR---EWYK-PLVWFWILVGLAYFAAVLSMIGDWLRVLSK---- 100 usage_01224.pdb 54 --------------GPLVWFWILVGLAYFAAVLSMIGDWLRVLSK---- 84 usage_01225.pdb 55 NAGIN-R---EWYK-PLVWFWILVGLAYFAAVLSMIGDWLRVLSKKTKE 98 PLVWFWILV #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################