################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:35:34 2021 # Report_file: c_0034_18.html ################################################################################################ #==================================== # Aligned_structures: 16 # 1: usage_00004.pdb # 2: usage_00005.pdb # 3: usage_00006.pdb # 4: usage_00007.pdb # 5: usage_00033.pdb # 6: usage_00034.pdb # 7: usage_00035.pdb # 8: usage_00042.pdb # 9: usage_00052.pdb # 10: usage_00057.pdb # 11: usage_00102.pdb # 12: usage_00103.pdb # 13: usage_00154.pdb # 14: usage_00174.pdb # 15: usage_00175.pdb # 16: usage_00176.pdb # # Length: 254 # Identity: 20/254 ( 7.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 57/254 ( 22.4%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 71/254 ( 28.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00004.pdb 1 -VALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLG--D-NGKGMALNVTN 56 usage_00005.pdb 1 -VALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLG--D-NGKGMALNVTN 56 usage_00006.pdb 1 -VALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLG--D-NGKGMALNVTN 56 usage_00007.pdb 1 -VALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLG--D-NGKGMALNVTN 56 usage_00033.pdb 1 KIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG--A-NGKGLMLNVTD 57 usage_00034.pdb 1 KIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG--A-NGKGLMLNVTD 57 usage_00035.pdb 1 KIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG--A-NGKGLMLNVTD 57 usage_00042.pdb 1 -VVIITGAGGGLGKYYSLEFAKLGAKVVVNDL--KAADVVVDEIVKNGGVAVADYNNVL- 56 usage_00052.pdb 1 KIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG--A-NGKGLMLNVTD 57 usage_00057.pdb 1 KIALVTGASRGIGAAIADTLAAAGAKVIGTATSESGAAAISERLAQWG--GEGRVLNSAE 58 usage_00102.pdb 1 KVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLG--D-NGKGMALNVTN 57 usage_00103.pdb 1 KVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLG--D-NGKGMALNVTN 57 usage_00154.pdb 1 -LVLVTGAGRGLGAAISSGAAEQGARVILVDIDGTAAKAQADALTAKGFVAEGHALDVTD 59 usage_00174.pdb 1 -KALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLG--K-DVFVFSANLSD 56 usage_00175.pdb 1 KIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG--A-NGKGLMLNVTD 57 usage_00176.pdb 1 KIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG--A-NGKGLMLNVTD 57 lvTGA G G ai a GA V a l n usage_00004.pdb 57 PESIEAVLKAITDEFGGVDILVNNA-GITRDNLLMR--M---KEEEWSDIMETNLTSIFR 110 usage_00005.pdb 57 PESIEAVLKAITDEFGGVDILVNNA-GITRDNLLMR--M---KEEEWSDIMETNLTSIFR 110 usage_00006.pdb 57 PESIEAVLKAITDEFGGVDILVNNA-GITRDNLLMR--M---KEEEWSDIMETNLTSIFR 110 usage_00007.pdb 57 PESIEAVLKAITDEFGGVDILVNNA-GIT---LLMR--M---KEEEWSDIMETNLTSIFR 107 usage_00033.pdb 58 PASIESVLEKIRAEFGEVDILVNNA-GITRDNLLMR--M---KDEEWNDIIETNLSSVFR 111 usage_00034.pdb 58 PASIESVLEKIRAEFGEVDILVNNA-GITRDNLLMR--M---KDEEWNDIIETNLSSVFR 111 usage_00035.pdb 58 PASIESVLEKIRAEFGEVDILVNNA-GITRDNLLMR--M---KDEEWNDIIETNLSSVFR 111 usage_00042.pdb 57 --DGDKIVETAVKNFGTVHVIINNA-GILRDASMKK--M---TEKDYKLVIDVHLNGAFA 108 usage_00052.pdb 58 PASIESVLEKIRAEFGEVDILVNNAN------LLMR--M---KDEEWNDIIETNLSSVFR 106 usage_00057.pdb 59 PETVENLIADIEKTFGKLDILVNNA-GITRDNLLMR--M---KEEEWDDIMQVNLKSVFR 112 usage_00102.pdb 58 PESIEAVLKAITDEFGGVDILVNNA-------------M---KEEEWSDIMETNLTSIFR 101 usage_00103.pdb 58 PESIEAVLKAITDEFGGVDILVNNA-----------------KEEEWSDIMETNLTSIFR 100 usage_00154.pdb 60 RDAVAALADDILSRFGGLDVLVNNA-GVAGRAAFDQPEA---V-EVWDRVIGVNLEGAFN 114 usage_00174.pdb 57 RKSIKQLAEVAEREMEGIDILVNNA-GIT----------VRMQDQDWDDVLAVNLTAAST 105 usage_00175.pdb 58 PASIESVLEKIRAEFGEVDILVNNA-GITRDNLLMR--M---KDEEWNDIIETNLSSVFR 111 usage_00176.pdb 58 PASIESVLEKIRAEFGEVDILVNNA-GITRDNLLMR--M---KDEEWNDIIETNLSSVFR 111 fg d lvNNA w nL f usage_00004.pdb 111 LSKAVLRGMMKKRQGRIINVASVV--GTM-GNAGQANYAAAKAGVIGFTKSMAREVASRG 167 usage_00005.pdb 111 LSKAVLRGMMKKRQGRIINVASVV-------GTMQANYAAAKAGVIGFTKSMAREVASRG 163 usage_00006.pdb 111 LSKAVLRGMMKKRQGRIINVASVV---------GQANYAAAKAGVIGFTKSMAREVASRG 161 usage_00007.pdb 108 LSKAVLRGMMKKRQGRIINVAS------------QANYAAAKAGVIGFTKSMAREVASRG 155 usage_00033.pdb 112 LSKAVMRAMMKKRHGRIITIGSVVGT--MG-NGGQANYAAAKAGLIGFSKSLAREVASRG 168 usage_00034.pdb 112 LSKAVMRAMMKKRHGRIITIGSVVGT--MG-NGGQANYAAAKAGLIGFSKSLAREVASRG 168 usage_00035.pdb 112 LSKAVMRAMMKKRHGRIITIGSVVGT--MG-NGGQANYAAAKAGLIGFSKSLAREVASRG 168 usage_00042.pdb 109 VTKAAWPYFQKQKYGRIVNTSSPAGL--YG-NFGQANYASAKSALLGFAETLAKEGAKYN 165 usage_00052.pdb 107 LSKAVMRAMMKKRHGRIITIGSVV--GTM---------AAAKAGLIGFSKSLAREVASRG 155 usage_00057.pdb 113 ASKAVLRGMMKQRAGRIINITSVVGV--MG-NAGQTNYAAAKAGLIGFSKSMAREVGSRG 169 usage_00102.pdb 102 LSKAVLRGMMKKRQGRIINVGSVV--G-------AANYAAAKAGVIGFTKSMAREVASRG 152 usage_00103.pdb 101 LSKAVLRGMMKKRQGRIINVGSVV-----------ANYAAAKAGVIGFTKSMAREVASRG 149 usage_00154.pdb 115 VSHALVPALKAA-KGNVVHLCSVAGF--VS-GGSTAGYVVSKGAIRSLTQVMARDLAPHG 170 usage_00174.pdb 106 LTRELIHSMMRRRYGRIINITSI----------GQTNYCAAKAGLIGFSKALAQEIASRN 155 usage_00175.pdb 112 LSKAVMRAMMKKRHGRIITIGSVVGT--MG-NGGQANFAAAKAGLIGFSKSLAREVASRG 168 usage_00176.pdb 112 LSKAVMRAMMKKRHGRIITIGSVVGT--MG-NGGQANFAAAKAGLIGFSKSLAREVASRG 168 a Gri S aK gf A e a usage_00004.pdb 168 VTVNTVA-PGFIETDMTKALNDE---QRTATLAQVPA-----GRLGDPREIASAVAFLAS 218 usage_00005.pdb 164 VTVNTVA-PGFIETDMTKALNDE---QRTATLAQVPA-----GRLGDPREIASAVAFLAS 214 usage_00006.pdb 162 VTVNTVA-PGFIETDMTKALNDE---QRTATLAQVPA-----GRLGDPREIASAVAFLAS 212 usage_00007.pdb 156 VTVNTVA-PGFIETDMTKALNDE---QRTATLAQVPA-----GRLGDPREIASAVAFLAS 206 usage_00033.pdb 169 ITVNVVA-PGFIETDMTRALSDD---QRAGILAQVPA-----GRLGGAQEIANAVAFLAS 219 usage_00034.pdb 169 ITVNVVA-PGFIETDMTRALSDD---QRAGILAQVPA-----GRLGGAQEIANAVAFLAS 219 usage_00035.pdb 169 ITVNVVA-PGFIETDMTRALSDD---QRAGILAQVPA-----GRLGGAQEIANAVAFLAS 219 usage_00042.pdb 166 IKANAIAPLARS----------------RMTESIMPPPMLEK---LGPEKVAPLVLYLSS 206 usage_00052.pdb 156 ITVNVVA-PGFIETDMTRALSDD---QRAGILAQVPA-----GRLGGAQEIANAVAFLAS 206 usage_00057.pdb 170 ITVNCVA-PGFIDTDMTRALPEE---TRQTFTAQTAL-----GRFGDAQDIADAVLFLAS 220 usage_00102.pdb 153 VTVNTVA-PGFIETDMTKALNDE---QRTATLAQVPA-----GRLGDPREIASAVAFLAS 203 usage_00103.pdb 150 VTVNTVA-PGFIETDMTKALNDE---QRTATLAQVPA-----GRLGDPREIASAVAFLAS 200 usage_00154.pdb 171 IRVNAVA-PGIMMS-EM------AVAGTDWFMNRVMM-----KRIGETSEVVDPVVFLAS 217 usage_00174.pdb 156 ITVNCIA-PGFIKSAMTDKLNEK---QKEAIMAMIPM-----KRMGIGEEIAFATVYLAS 206 usage_00175.pdb 169 ITVNVVA-PGFIETDMTRALSDD---QRAGILAQVPA-----GRLGGAQEIANAVAFLAS 219 usage_00176.pdb 169 ITVNVVA-PGFIETDMTRALSDD---QRAGILAQVPA-----GRLGGAQEIANAVAFLAS 219 vN A pg g a v LaS usage_00004.pdb 219 PEAAYITGETLHVN 232 usage_00005.pdb 215 PEAAYITGETLHVN 228 usage_00006.pdb 213 PEAAYITGETLHVN 226 usage_00007.pdb 207 PEAAYITGETLHVN 220 usage_00033.pdb 220 DEAAYITGETLHVN 233 usage_00034.pdb 220 DEAAYITGETLHVN 233 usage_00035.pdb 220 DEAAYITGETLHVN 233 usage_00042.pdb 207 AENELTGQ-FFEVA 219 usage_00052.pdb 207 DEAAYITGETLHVN 220 usage_00057.pdb 221 DQAKYITGQTLHVN 234 usage_00102.pdb 204 PEAAYITGETLHVN 217 usage_00103.pdb 201 PEAAYITGETLHVN 214 usage_00154.pdb 218 PMASYITGTILPVD 231 usage_00174.pdb 207 DEAAYLTGQTLHIN 220 usage_00175.pdb 220 DEAAYITGETLHVN 233 usage_00176.pdb 220 DEAAYITGETLHVN 233 a y tg l v #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################