################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:32:38 2021 # Report_file: c_0491_8.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00019.pdb # 2: usage_00040.pdb # 3: usage_00048.pdb # 4: usage_00056.pdb # 5: usage_00073.pdb # 6: usage_00077.pdb # 7: usage_00078.pdb # 8: usage_00079.pdb # 9: usage_00080.pdb # 10: usage_00086.pdb # 11: usage_00087.pdb # # Length: 107 # Identity: 6/107 ( 5.6%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 12/107 ( 11.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 50/107 ( 46.7%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00019.pdb 1 ----LDEVKDALVEIGI-GGMTVTEVKGF------------------------------- 24 usage_00040.pdb 1 ----LDEVKIALVNAGI-VGMTVSEVRGFGR----------------------------- 26 usage_00048.pdb 1 ----LDEVKIALVNAGI-VGMTVSEVRGFGR--QK-----------GQT--------EYT 34 usage_00056.pdb 1 ----LEDVREALSSIGI-QGLTVTEVKGFGR--QKGHAELYRGA--E--Y---------S 40 usage_00073.pdb 1 ---KLEDLKAALVQSGFIKGMTISQVLGFGN----------------------------- 28 usage_00077.pdb 1 RPFKLDEVKIALVNAGI-VGMTVSEVRGF------------------------------- 28 usage_00078.pdb 1 ----FEKLKQELGKIGV-TSLTFSNVHGCGL-Q-K-----------A----------KIE 32 usage_00079.pdb 1 ---NFEKLKQELGKIGV-TSLTFSNVHGCGL-Q-K-----------A--HTELYRGVKIE 41 usage_00080.pdb 1 ----LDEVREALTSLGI-QGLTVSEVKGFGR--QKG--------SV-------------- 31 usage_00086.pdb 1 -----DEVKIALVNAGI-VGMTVSEVRGFGRQKGQ-----------T--ERYRGSEY--T 39 usage_00087.pdb 1 -----DEVKIALVNAGI-VGMTVSEVRGFGRQKGQ-----------T--ERYRGSEY--T 39 L G T V G usage_00019.pdb 25 -DFLPKVKIEVVVRDE-DVEKVVETIVKTAQTGRVGDGKIFIIP--- 66 usage_00040.pdb 27 -EFLQKLKIEIVVDEG-QVDMVVDKLVSAARTGEIGDGKIFIS---- 67 usage_00048.pdb 35 VEFLQKLKLEIVVEDA-QVDTVIDKIVAAARTGEIGDGKIFVSPVDQ 80 usage_00056.pdb 41 VNFLPKVKIDVAIADD-QLDEVIDIVSKAAYTGKIGDGKIFVAE--- 83 usage_00073.pdb 29 PTLLAKVKVEIVAHDA-AVEEMITTISQAVK------DGKIFV---- 64 usage_00077.pdb 29 -EFLQKLKLEIVVEDA-QVDTVIDKIVAAARTGEIGDGKIFVSP--- 70 usage_00078.pdb 33 SNVYERLKIEIVVS-KVPVDQVTETAKRVLKTGSPGDGKIFVYE--- 75 usage_00079.pdb 42 SNVYERLKIEIVVS-KVPVDQVTETAKRVLKTGSPGDGKIFVY---- 83 usage_00080.pdb 32 -SFLPKVKVEVAVSDD-QYEQVVEAIQKAANTGRIGDGKIFVLD--- 73 usage_00086.pdb 40 VEFLQKLKLEIVVEDA-QVDTVIDKIVAAARTGEIGDGKIFVS---- 81 usage_00087.pdb 40 VEFLQKLKLEIVVEDA-QVDTVIDKIVAAARTGEIGDGKIFVS---- 81 K e v gkif #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################