################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:44:01 2021 # Report_file: c_0149_4.html ################################################################################################ #==================================== # Aligned_structures: 12 # 1: usage_00003.pdb # 2: usage_00008.pdb # 3: usage_00009.pdb # 4: usage_00011.pdb # 5: usage_00015.pdb # 6: usage_00024.pdb # 7: usage_00025.pdb # 8: usage_00030.pdb # 9: usage_00049.pdb # 10: usage_00051.pdb # 11: usage_00052.pdb # 12: usage_00054.pdb # # Length: 116 # Identity: 44/116 ( 37.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 48/116 ( 41.4%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 7/116 ( 6.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00003.pdb 1 -AVTQSPRNKVAVTGGKVTLSCQQTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIP 59 usage_00008.pdb 1 -GVTQTPKFRVLKTGQSMTLLCAQDMNHEYMYWYRQDPGMGLRLIHYSVGEGTTAKGEVP 59 usage_00009.pdb 1 -AVTQSPRNKVAVTGGKVTLSCNQTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIP 59 usage_00011.pdb 1 AAVTQSPRNKVTVTGGNVTLSCRQTNSHNYMYWYRQDTGHGLRLIHYSYGAGNLQIGDVP 60 usage_00015.pdb 1 -AVTQSPRNKVAVTGGKVTLSCQQTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIP 59 usage_00024.pdb 1 AAVTQSPRSKVAVTGGKVTLSCHQTNNHDYMYWYRQDTGHGLRLIHYSYVADSTEKGDIP 60 usage_00025.pdb 1 AAVTQSPRSKVAVTGGKVTLSCHQTNNHDYMYWYRQDTGHGLRLIHYSYVADSTEKGDIP 60 usage_00030.pdb 1 -KVTQSSRYLVKRTGEKVFLECVQDMDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIP 59 usage_00049.pdb 1 VKVTQSSRYLVKRTGEKVFLECVQDMDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIP 60 usage_00051.pdb 1 -GVTQTPKFQVLKTGQSMTLQCAQDMNHNSMYWYRQDPGMGLRLIYYSASEGTTDKGEVP 59 usage_00052.pdb 1 -GVTQTPKFQVLKTGQSMTLQCAQDMNHNSMYWYRQDPGMGLRLIYYSASEGTTDKGEVP 59 usage_00054.pdb 1 -GVTQTPKFQVLKTGQSMTLQCAQDMNHNSMYWYRQDPGMGLRLIYYSASEGTTDKGEVP 59 VTQ V TG L C Q H M WYRQD G GLRLI S kG P usage_00003.pdb 60 DGYKASRPSQEQFSLILELATPSQTSVYFCASGGGRG-SYAEQ-FFGPGTRLTVL- 112 usage_00008.pdb 60 DGYNVSRLKKQNFLLGLESAAPSQTSVYFCASGQ--G-NFDIQ-YFGAGTRLSVLE 111 usage_00009.pdb 60 DGYKASRPSQENFSLILELATPSQTSVYFCASGG--Q-GRAEQ-FFGPGTRLTVLG 111 usage_00011.pdb 61 DGYKATRTTQEDFFLLLELASPSQTSLYFCASSD--A--PGQL-YFGEGSKLTVL- 110 usage_00015.pdb 60 DGYKASRPSQEQFSLILELATPSQTSVYFCASGGGRG-SYAEQ-FFGPGTRLTVLE 113 usage_00024.pdb 61 DGYKASRPSQENFSLILELASLSQTAVYFCASSD--W-VSYEQ-YFGPGTRLTVLE 112 usage_00025.pdb 61 DGYKASRPSQENFSLILELASLSQTAVYFCASSD--W-VSYEQ-YFGPGTRLTVLE 112 usage_00030.pdb 60 EGYSVSRDKKERFSLILESASTNQTSMYLCASSP--SGYQETQ-YFGPGTRLLVLE 112 usage_00049.pdb 61 EGYSVSREKKERFSLILESASTNQTSMYLCASSS--TGLPYGY-TFGSGTRLTVVE 113 usage_00051.pdb 60 NGYNVSRLNKREFSLRLESAAPSQTSVYFCASPG--L-AGEYEQYFGPGTRLTVTE 112 usage_00052.pdb 60 NGYNVSRLNKREFSLRLESAAPSQTSVYFCASPG--L-AGEYEQYFGPGTRLTVTE 112 usage_00054.pdb 60 NGYNVSRLNKREFSLRLESAAPSQTSVYFCASPG--L-AGEYEQYFGPGTRLTVT- 111 GY sR F L LE A QT Y CAS FG GtrL V #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################