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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Wed Jan 20 23:47:47 2021
# Report_file: c_0259_8.html
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#====================================
# Aligned_structures: 8
#   1: usage_00004.pdb
#   2: usage_00005.pdb
#   3: usage_00042.pdb
#   4: usage_00106.pdb
#   5: usage_00121.pdb
#   6: usage_00172.pdb
#   7: usage_00173.pdb
#   8: usage_00215.pdb
#
# Length:        128
# Identity:       20/128 ( 15.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     63/128 ( 49.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           19/128 ( 14.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00004.pdb         1  --GDILKKHLRWLKALP--------RVTPFYAVKCNDSKAIVKTLAATGTGFDCASKTEI   50
usage_00005.pdb         1  --GDILKKHLRWLKALP--------RVTPFYAVKCNDSKAIVKTLAATGTGFDCASKTEI   50
usage_00042.pdb         1  -LGDILKKHLRWLKALP--------RVTPFYAV-CNDSKAIVKTLAATGTGFDCASKTEI   50
usage_00106.pdb         1  --GDILKKHLRWLKALP--------RVTPFYAVKCNDSKAIVKTLAATGTGFDCASKTEI   50
usage_00121.pdb         1  --GDILKKHLRWLKALP--------RVTPFYAVKCNDSKAIVKTLAATGTGFDCASKTEI   50
usage_00172.pdb         1  --GKIVKKHSQWQTVVA--------QIKPFYTVKCNSTPAVLEILAALGTGFACSSKNEM   50
usage_00173.pdb         1  --GKIVKKHSQWQTVVA--------QIKPFYTVKCNSTPAVLEILAALGTGFACSSKNEM   50
usage_00215.pdb         1  SEEQIKINYNRYIEAFKRWEEETGKEFIVAYAYKANANLAITRLLAKLGCGADVVSGGEL   60
                             g I kkh  w                pfY v cN   A    LAa GtGf c Sk E 

usage_00004.pdb        51  QLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAH----PKAKL  106
usage_00005.pdb        51  QLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAH----PKAKL  106
usage_00042.pdb        51  QLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAH----PKAKL  106
usage_00106.pdb        51  QLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAH----PKAKL  106
usage_00121.pdb        51  QLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAH----PKAKL  106
usage_00172.pdb        51  ALVQELGVSPENIIFTSPCKQVSQIKYAAKVGVNIMTCDNEIELKKIARNH----PNAKV  106
usage_00173.pdb        51  ALVQELGVSPENIIFTSPCKQVSQIKYAAKVGVNIMTCDNEIELKKIARNH----PNAKV  106
usage_00215.pdb        61  YIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIRAFNVDSISELILINETAKELGETANV  120
                            lvq lgV pe Ii   pCKqvsqIkyaa  gv  mt D e EL k ar h    p Ak 

usage_00004.pdb       107  VLRI----  110
usage_00005.pdb       107  VLRI----  110
usage_00042.pdb       107  VLRI----  110
usage_00106.pdb       107  VLRIATDD  114
usage_00121.pdb       107  VLRI----  110
usage_00172.pdb       107  LLHIATE-  113
usage_00173.pdb       107  LLHI----  110
usage_00215.pdb       121  AFRI----  124
                            l I    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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