################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:01:18 2021 # Report_file: c_0073_4.html ################################################################################################ #==================================== # Aligned_structures: 9 # 1: usage_00004.pdb # 2: usage_00005.pdb # 3: usage_00006.pdb # 4: usage_00007.pdb # 5: usage_00008.pdb # 6: usage_00020.pdb # 7: usage_00021.pdb # 8: usage_00022.pdb # 9: usage_00023.pdb # # Length: 196 # Identity: 121/196 ( 61.7%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 130/196 ( 66.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 25/196 ( 12.8%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00004.pdb 1 GIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHM--GMLATVMNGLAMRDALHRAYVNARLM 58 usage_00005.pdb 1 GIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHM--GMLATVMNGLAMRDALHRAYVNARLM 58 usage_00006.pdb 1 GIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHM--GMLATVMNGLAMRDALHRAYVNARLM 58 usage_00007.pdb 1 GIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHM--GMLATVMNGLAMRDALHRAYVNARLM 58 usage_00008.pdb 1 GIQVGVVIGGGNLFRGAGLAKAG-NRVVGDHGLA-TVNGL-----ARDALHRAYVNARLS 53 usage_00020.pdb 1 --EVSVVLGGGNLFRGAKLAKAGMNRVVGDHM--GMLATVMNGLAMRDSLFRADVNAKLM 56 usage_00021.pdb 1 --EVSVVLGGGNLFRGAKLAKAGMNRVVGDHM--GMLATVMNGLAMRDSLFRADVNAKLM 56 usage_00022.pdb 1 --EVSVVLGGGNLFRGAKLAKAGMNRVVGDHM--GMLATVMNGLAMRDSLFRADVNAKLM 56 usage_00023.pdb 1 --EVSVVLGGGNLFRGAKLAKAGMNRVVGDHM--GMLATVMNGLAMRDSLFRADVNAKLM 56 V VV GGGNLFRGA LAKAG NRVVGDHm mlatv mRD L RA VNA Lm usage_00004.pdb 59 SAIPLNAVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKAT 118 usage_00005.pdb 59 SAIPLNAVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKAT 118 usage_00006.pdb 59 SAIPLNGVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKAT 118 usage_00007.pdb 59 SAIPLNGVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKAT 118 usage_00008.pdb 54 -AIPLN-VCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKAT 111 usage_00020.pdb 57 SAFQLNGICDTYNWSEAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKAT 116 usage_00021.pdb 57 SAFQLNGICDTYNWSEAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKAT 116 usage_00022.pdb 57 SAFQLNGICDTYNWSEAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKAT 116 usage_00023.pdb 57 SAFQLNGICDTYNWSEAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKAT 116 A LN CD Y W EAI LR RVVI SAGTGNPFFTTDS ACLRGIEIEA VVLKAT usage_00004.pdb 119 KVDGVFTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGA 178 usage_00005.pdb 119 KVDGVFTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGA 178 usage_00006.pdb 119 KVDGVFTADP---PTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGA 175 usage_00007.pdb 119 KVDGVFTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGA 178 usage_00008.pdb 112 KVDGVFTADPAKDPT-ATYEQLTYSEVLEKELKV-DLAAFTLARDHKLPIRVFN-NKPGA 168 usage_00020.pdb 117 KVDGVYDC-------AKLYKNLSYAEVIDKELKVMDLSAFTLARDHGMPIRVFNMGKPGA 169 usage_00021.pdb 117 KVDGVYDC-------AKLYKNLSYAEVIDKELKVMDLSAFTLARDHGMPIRVFNMGKPGA 169 usage_00022.pdb 117 KVDGVYDC-------AKLYKNLSYAEVIDKELKVMDLSAFTLARDHGMPIRVFNMGKPGA 169 usage_00023.pdb 117 KVDGVYDC-------AKLYKNLSYAEVIDKELKVMDLSAFTLARDHGMPIRVFNMGKPGA 169 KVDGV Y L Y EV KELKV DL AFTLARDH PIRVFN KPGA usage_00004.pdb 179 LRRVVMGEKEGTLITE 194 usage_00005.pdb 179 LRRVVMGEKEGTLITE 194 usage_00006.pdb 176 LRRVVMGEKEGTLITE 191 usage_00007.pdb 179 LRRVVMGEKEGTLITE 194 usage_00008.pdb 169 LRRVVGE-KEGTLITE 183 usage_00020.pdb 170 LRQVVTGTEEGTTIC- 184 usage_00021.pdb 170 LRQVVTGTEEGTTIC- 184 usage_00022.pdb 170 LRQVVTGTEEGTTIC- 184 usage_00023.pdb 170 LRQVVTGTEEGTTIC- 184 LR VV g EGT I #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################