################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:28:17 2021 # Report_file: c_1340_16.html ################################################################################################ #==================================== # Aligned_structures: 15 # 1: usage_00014.pdb # 2: usage_00015.pdb # 3: usage_00016.pdb # 4: usage_00021.pdb # 5: usage_00022.pdb # 6: usage_00224.pdb # 7: usage_00236.pdb # 8: usage_00254.pdb # 9: usage_00255.pdb # 10: usage_00346.pdb # 11: usage_00411.pdb # 12: usage_00412.pdb # 13: usage_00413.pdb # 14: usage_00426.pdb # 15: usage_00427.pdb # # Length: 38 # Identity: 0/ 38 ( 0.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 3/ 38 ( 7.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 16/ 38 ( 42.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00014.pdb 1 -SADFRKFFAKA----K-HIVIISGAGV---SAES--G 27 usage_00015.pdb 1 -SADFRKFFAKA----K-HIVIISGAGV---SAES--G 27 usage_00016.pdb 1 -SADFRKFFAKA----K-HIVIISGAGV---SAES--G 27 usage_00021.pdb 1 ---DFRKFFAKA----K-HIVIISGAGV---SAES--G 25 usage_00022.pdb 1 SMADFRKFFAKA----K-HIVIISGAGV---SAES--G 28 usage_00224.pdb 1 SMADFRKFFAKA----K-HIVIISGAGV---SAES--G 28 usage_00236.pdb 1 -SDFRKLFSGLE----DIRVLRTRNLPDVIPIYPPIG- 32 usage_00254.pdb 1 SMADFRKFFAKA----K-HIVIISGAGV---SAES--G 28 usage_00255.pdb 1 -MADFRKFFAKA----K-HIVIISGAGV---SAES--G 27 usage_00346.pdb 1 ----VWRILKLFKAFDI-PLTIFAVAMA---AQR---H 27 usage_00411.pdb 1 -MADFRKFFAKA----K-HIVIISGAGV---SAES--G 27 usage_00412.pdb 1 SMADFRKFFAKA----K-HIVIISGAGV---SAES--G 28 usage_00413.pdb 1 SMADFRKFFAKA----K-HIVIISGAGV---SAES--G 28 usage_00426.pdb 1 -MADFRKFFAKA----K-HIVIISGAGV---SAES--G 27 usage_00427.pdb 1 SMADFRKFFAKA----K-HIVIISGAGV---SAES--G 28 f i a #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################