################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:01:51 2021 # Report_file: c_0125_1.html ################################################################################################ #==================================== # Aligned_structures: 9 # 1: usage_00001.pdb # 2: usage_00002.pdb # 3: usage_00003.pdb # 4: usage_00004.pdb # 5: usage_00005.pdb # 6: usage_00006.pdb # 7: usage_00007.pdb # 8: usage_00008.pdb # 9: usage_00009.pdb # # Length: 162 # Identity: 115/162 ( 71.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 125/162 ( 77.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 16/162 ( 9.9%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 --------------KVLTPTQVKNRPTSITWDGLDPGKLYTLVLTDPDAPSRKDPKYREW 46 usage_00002.pdb 1 LQVKYGGAEVDELGKVLTPTQVKNRPTSITWDGLDPGKLYTLVLTDPDAPSRKDPKYREW 60 usage_00003.pdb 1 --------------KVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYREW 46 usage_00004.pdb 1 --------------KVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYREW 46 usage_00005.pdb 1 --------------KVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYREW 46 usage_00006.pdb 1 --------------KVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDPDAPSRKDPKFREW 46 usage_00007.pdb 1 --------------KVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDPDAPSRKDPKFREW 46 usage_00008.pdb 1 --------------QVLTPTQVKHRPGSISWDGLDPGKLYTLILTDPDAPSRKKPVYREW 46 usage_00009.pdb 1 --------------KVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDPDAPSRKDPKFREW 46 kVLTPTQV nRP SI WDGLD GKLYTLvLTDPDAPSRKdPk REW usage_00001.pdb 47 HHFLVVNMKGNNISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQEGPLKCDEPILSNRSGD 106 usage_00002.pdb 61 HHFLVVNMKGNNISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQEGPLKCDEPILSNRSGD 120 usage_00003.pdb 47 HHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQDRPLKCDEPILSNRSGD 106 usage_00004.pdb 47 HHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQDRPLKCDEPILSNRSGD 106 usage_00005.pdb 47 HHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQDRPLKCDEPILSNRSGD 106 usage_00006.pdb 47 HHFLVVNMKGNDISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPLNCDEPILSNKSGD 106 usage_00007.pdb 47 HHFLVVNMKGNDISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPLNCDEPILSNKSGD 106 usage_00008.pdb 47 HHFLVVNMKGNDISSGNVLSDYVGSGPPKGTGLHRYVWLVYQQDKPLRCDEPILTNRSGD 106 usage_00009.pdb 47 HHFLVVNMKGNDISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPLNCDEPILSNKSGD 106 HHFLVVNMKGN ISSGtVLS YVGSGPPK TGLHRYVWLVYeQ PL CDEPILsN SGD usage_00001.pdb 107 HRGKFKVASFRKKYELGAPVAGTCYQAEWDDYVPKLYEQLS- 147 usage_00002.pdb 121 HRGKFKVASFRKKYELGAPVAGTCYQAEWDDYVPKLYEQLS- 161 usage_00003.pdb 107 HRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKLYEQL-- 146 usage_00004.pdb 107 HRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKLYEQLS- 147 usage_00005.pdb 107 HRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKLYEQLS- 147 usage_00006.pdb 107 NRGKFKVEEFRKKYHLGAPVAGTCFQAEWDDSVPKLHDQLAG 148 usage_00007.pdb 107 NRGKFKVEEFRKKYHLGAPVAGTCFQAEWDDSVPKLHDQLA- 147 usage_00008.pdb 107 HRGKFKTAAFRKKYHLGAPVAGTCYQAEWDSYVPKLYKQLS- 147 usage_00009.pdb 107 NRGKFKVESFRKKYHLGAPVAGTCFQAEWDDSVPKLHDQLAG 148 RGKFKv FRKKY L APVAGTC QAEWDd VPKL QL #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################