################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 07:37:28 2021 # Report_file: c_0119_12.html ################################################################################################ #==================================== # Aligned_structures: 54 # 1: usage_00024.pdb # 2: usage_00025.pdb # 3: usage_00026.pdb # 4: usage_00027.pdb # 5: usage_00028.pdb # 6: usage_00029.pdb # 7: usage_00037.pdb # 8: usage_00038.pdb # 9: usage_00039.pdb # 10: usage_00040.pdb # 11: usage_00041.pdb # 12: usage_00042.pdb # 13: usage_00043.pdb # 14: usage_00051.pdb # 15: usage_00052.pdb # 16: usage_00065.pdb # 17: usage_00068.pdb # 18: usage_00076.pdb # 19: usage_00077.pdb # 20: usage_00084.pdb # 21: usage_00089.pdb # 22: usage_00108.pdb # 23: usage_00109.pdb # 24: usage_00112.pdb # 25: usage_00117.pdb # 26: usage_00118.pdb # 27: usage_00139.pdb # 28: usage_00147.pdb # 29: usage_00148.pdb # 30: usage_00149.pdb # 31: usage_00150.pdb # 32: usage_00151.pdb # 33: usage_00162.pdb # 34: usage_00172.pdb # 35: usage_00174.pdb # 36: usage_00175.pdb # 37: usage_00190.pdb # 38: usage_00216.pdb # 39: usage_00219.pdb # 40: usage_00241.pdb # 41: usage_00254.pdb # 42: usage_00255.pdb # 43: usage_00257.pdb # 44: usage_00258.pdb # 45: usage_00260.pdb # 46: usage_00261.pdb # 47: usage_00262.pdb # 48: usage_00268.pdb # 49: usage_00275.pdb # 50: usage_00276.pdb # 51: usage_00277.pdb # 52: usage_00287.pdb # 53: usage_00301.pdb # 54: usage_00302.pdb # # Length: 125 # Identity: 19/125 ( 15.2%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 22/125 ( 17.6%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 24/125 ( 19.2%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00024.pdb 1 --KMTQSPSFLSASVGDRVTLNCKASQ----N-ID------KYLNWYQQKLGESPKLLIY 47 usage_00025.pdb 1 --KMTQSPSFLSASVGDRVTLNCKASQ----N-ID------KYLNWYQQKLGESPKLLIY 47 usage_00026.pdb 1 --KMTQSPSFLSASVGDRVTLNCKASQ----N-ID------KYLNWYQQKLGESPKLLIY 47 usage_00027.pdb 1 --KMTQSPSFLSASVGDRVTLNCKASQ----N-ID------KYLNWYQQKLGESPKLLIY 47 usage_00028.pdb 1 -IVLTQSPATLSLSPGERATLSCRASQ----S-VG------GYLTWYQHKPGQAPRLLIF 48 usage_00029.pdb 1 --VLTQSPATLSLSPGERATLSCRASQ----S-VS------SYLAWYQQKPGQAPRLLIY 47 usage_00037.pdb 1 -IQMTQSPSSLSASVGDRVTITCQASQ----D-II------KYLNWYQQKPGKAPKLLIY 48 usage_00038.pdb 1 -IQMTQSPSSLSASVGDRVTITCQASQ----D-II------KYLNWYQQKPGKAPKLLIY 48 usage_00039.pdb 1 AIEMTQTPFSVSAAVGGTVTINCQASQ----N-IY------SNLAWYQQKPGQPPKLLMY 49 usage_00040.pdb 1 -IQMTQSPSSLSASVGDRVTITCRASQ----S-IS------SYLNWYQQKPGKAPKLLIY 48 usage_00041.pdb 1 -IQMTQSPSSLSASVGDRVTITCRASQ----S-IS------SYLNWYQQKPGKAPKLLIY 48 usage_00042.pdb 1 DIQMTQSPSSLSASVGDRVTITCRASQ----S-IS------SYLNWYQQKPGKAPKLLIY 49 usage_00043.pdb 1 DIQMTQSPSSVSASVGDRVTITCRASQ----G-IS------SWLAWYQQKPGKAPKLLIY 49 usage_00051.pdb 1 -IQMTQSPSSLSASVGDRVTITCQASQ----D-IS------NYLNWYQQKPGKAPKLLIY 48 usage_00052.pdb 1 -IQMTQSPSSLSASVGDRVTITCRASQ----G-IS------SALAWYQQKPGKAPKLLIY 48 usage_00065.pdb 1 -IQMTQSPSSLSASVGDRVTITCRASQ----D-VS------TAVAWYQQKPGKAPKLLIY 48 usage_00068.pdb 1 -IELTQSPSSLSASLGGKVTITCKASQ----D-IK------KYIGWYQHKPGKGPRLLIH 48 usage_00076.pdb 1 DIQMTQSPSTLSASVGDRVTITCSASS----R-VG-------YMHWYQQKPGKAPKLLIY 48 usage_00077.pdb 1 DIQMTQSPSSLSASVGDRVTITCRASQ----D-VS------TAVAWYQQKPGKAPKLLIY 49 usage_00084.pdb 1 --QMTQSPSSLSASVGDRVTITCQASQ----D-II------KYLNWYQQTPGKAPKLLIY 47 usage_00089.pdb 1 DTVMTQSPATLSVSPGERVTLSCRASQ----I-IN------TNLAWYQKRPGQAPRLLIY 49 usage_00108.pdb 1 -IRMTQSPSFLSASVGDRVTITCRASQ----D-IN------SFLAWYQQRPGKAPKLLIY 48 usage_00109.pdb 1 -IRMTQSPSFLSASVGDRVTITCRASQ----D-IN------SFLAWYQQRPGKAPKLLIY 48 usage_00112.pdb 1 --VMTQSPSSLTVTAGEKVTMSCTSSQ----S-LFNSGKQKNYLTWYQQKPGQPPKVLIY 53 usage_00117.pdb 1 -IVLTQSPGTQSLSPGERATLSCRASQ----SVGN------NKLAWYQQRPGQAPRLLIY 49 usage_00118.pdb 1 --VLTQSPGTQSLSPGERATLSCRASQ----SVGN------NKLAWYQQRPGQAPRLLIY 48 usage_00139.pdb 1 -IQMTQSPSSLSASVGDRVTITCQASQ----V-IS------NYLNWYQQKPGKAPKLLIY 48 usage_00147.pdb 1 -IVLTQSPATLSVSPGERATLSCRASQ----S-VR------SYLAWYQQKPGQAPRLLFS 48 usage_00148.pdb 1 -IVLTQSPATLSVSPGERATLSCRASQ----S-VR------SYLAWYQQKPGQAPRLLFS 48 usage_00149.pdb 1 -IVLTQSPATLSVSPGERATLSCRASQ----S-VR------SYLAWYQQKPGQAPRLLFS 48 usage_00150.pdb 1 DIQLTQSPSSLSASVGDRVTITCRASQ----S-IG------SYLNWYQQKPGKAPKLLIY 49 usage_00151.pdb 1 -IQMTQSPSSLSASVGDRVTITCRASQ----G-IR------NYLAWYQQKPGKAPKLLIY 48 usage_00162.pdb 1 DIQMNQSPSSLSASLGDTITITCHASQ----N-IY------VWLNWYQQKPGNIPKLLIY 49 usage_00172.pdb 1 DIQMTQSPASLSASLGETVTIECRASE----D-IY------NALAWYQQKPGKSPQLLIY 49 usage_00174.pdb 1 -IQMTQSPSSVSASVGDRVTITCRASQ----G-IS------SWLAWYQQKPGKAPKLLIY 48 usage_00175.pdb 1 -VVMTQSPSTLSASVGDTITITCRASQ----S-IE------TWLAWYQQKPGKAPKLLIY 48 usage_00190.pdb 1 DIQMTQSPSSLSASVGDRVTITCRASQDIPRS-IS------GYVAWYQQKPGKAPKLLIY 53 usage_00216.pdb 1 -IQMTQSPSSLSASVGDRVTITCRASQ----D-VS------TAVAWYQQKPGKAPKLLIY 48 usage_00219.pdb 1 DIVMTQSPDSLAVSLGERATINCKSSQ----S-VLYSSNNKNYLAWYQQKPGQPPKLLIY 55 usage_00241.pdb 1 DIQMTQVPVSLSAFVGDRVSITCRASQ----D-IS------RWLAWYQQKPGRAPKLLIY 49 usage_00254.pdb 1 --VLTQSPSSLSVSVGDRVTITCRASS----S-VT-------YIHWYQQKPGLAPKSLIY 46 usage_00255.pdb 1 --VLTQSPSSLSVSVGDRVTITCRASS----S-VT-------YIHWYQQKPGLAPKSLIY 46 usage_00257.pdb 1 DVVMTQTPASVSEPVGGTVTIKCQASQ----S-IS------SYLAWYQQKPGQRPRLLIY 49 usage_00258.pdb 1 DIQLTQSPSSLSASVGDRVTITCQASQ----D-IR------KYLNWYQQKPGKAPNLLIY 49 usage_00260.pdb 1 EIVLTQSPATLSLSPGERATLSCRASQ----S-VG------GYLTWYQHKPGQAPRLLIF 49 usage_00261.pdb 1 -IQMTQSPSSLSASVGDRVTITCQASQ----D-IS------DYLIWYQQKLGKAPNLLIY 48 usage_00262.pdb 1 -IQMTQSPSSLSASVGDRVTITCQASQ----D-IS------DYLIWYQQKLGKAPNLLIY 48 usage_00268.pdb 1 DIQMNQSPSSLSASLGDTITITCHASQ----N-IN------VWLNWFQQKPGSIPKLLIY 49 usage_00275.pdb 1 DIQMTQSPSTLSASVGDRVTITCSASS----R-VG-------YMHWYQQKPGKAPKLLIY 48 usage_00276.pdb 1 DIQMTQSPSTLSASVGDRVTITCSASS----R-VG-------YMHWYQQKPGKAPKLLIY 48 usage_00277.pdb 1 DIQMTQSPSTLSASVGDRVTITCSASS----R-VG-------YMHWYQQKPGKAPKLLIY 48 usage_00287.pdb 1 -IQMTQSPSSLSASLGGKVTITCKASQ----D-IN------KYIAWYQHKPGKGPRLLIH 48 usage_00301.pdb 1 DIQMTQSTSSLSASVGDRVTITCRASQ----D-IS------NYLSWYQQKPGKAVKLLIY 49 usage_00302.pdb 1 -IQMTQSTSSLSASVGDRVTITCRASQ----D-IS------NYLSWYQQKPGKAVKLLIY 48 Q G t C S WyQ G L usage_00024.pdb 48 NTNNLQTGIPSRFSGSGSGTDFTLTISSLQPEDVATYFCLQHIS-----RPRTFGTGTKL 102 usage_00025.pdb 48 NTNNLQTGIPSRFSGSGSGTDFTLTISSLQPEDVATYFCLQHIS-----RPRTFGTGTKL 102 usage_00026.pdb 48 NTNNLQTGIPSRFSGSGSGTDFTLTISSLQPEDVATYFCLQHIS-----RPRTFGTGTKL 102 usage_00027.pdb 48 NTNNLQTGIPSRFSGSGSGTDFTLTISSLQPEDVATYFCLQHIS-----RPRTFGTGTKL 102 usage_00028.pdb 49 DASIRATGIPARFSGSGSGTDFTLTITRLEPEDFAVYYCQQRSM-----WPPVTFGQGTK 103 usage_00029.pdb 48 DASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSN-----WPPITFGQGTR 102 usage_00037.pdb 49 EASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQQYQS-----LPYTFGQGTKL 103 usage_00038.pdb 49 EASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQQYQS-----LPYTFGQGTKL 103 usage_00039.pdb 50 TASYLASGVPSRFKGSGSRTEYTLTISGVQCADAATYYCQTAYYNSRPDT-VAFGGGTEV 108 usage_00040.pdb 49 AASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYS-----TPNTFGQGTKV 103 usage_00041.pdb 49 AASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYS-----TPNTFGQGTKV 103 usage_00042.pdb 50 AASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYS-----TPNTFGQGTKV 104 usage_00043.pdb 50 AASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQANN-----FPLTFGGGTKV 104 usage_00051.pdb 49 DASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDN-----LPYTFGQGTKL 103 usage_00052.pdb 49 SASYRYTGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQRYS-----LWRTFGQGTKL 103 usage_00065.pdb 49 SASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQAWA-----YLPTFGQGTKV 103 usage_00068.pdb 49 YTSTLLPGIPSRFRGSGSGRDYSFSISNLEGGDIATYYCLQYYN-----LRTFGGGTKLE 103 usage_00076.pdb 49 DTSKLASGVPSRFSGSGSGTAFTLTISSLQPDDFATYYCFQGSG-----YPFTFGGGTKV 103 usage_00077.pdb 50 SAKFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYT-----TPPTFGQGTKV 104 usage_00084.pdb 48 EASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQQYQS-----LPYTFGQGTKL 102 usage_00089.pdb 50 AASARATGIPARFSGSGSGTEFTLTISGLQSEDSAVYYCQQYKH-----WPPYTFGRGTK 104 usage_00108.pdb 49 GASNLETGVPSRFSGGGSGTDFTLTISSLQPEDIATYYCQQYDK-----LPTFGQGTRLE 103 usage_00109.pdb 49 GASNLETGVPSRFSGGGSGTDFTLTISSLQPEDIATYYCQQYDK-----LPTFGQGTRLE 103 usage_00112.pdb 54 WASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCQNDYS-----NPLTFGGGTKL 108 usage_00117.pdb 50 GASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGQ-----SLSTFGQGTKV 104 usage_00118.pdb 49 GASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGQ-----SLSTFGQGTKV 103 usage_00139.pdb 49 DTSNLKTGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYEN-----LQFTFGPGTKV 103 usage_00147.pdb 49 DASNRATGIPARFTGSGSGTDFTLTISSLEPEDFAIYYCQQYRY-----SPRTFGQGTKV 103 usage_00148.pdb 49 DASNRATGIPARFTGSGSGTDFTLTISSLEPEDFAIYYCQQYRY-----SPRTFGQGTKV 103 usage_00149.pdb 49 DASNRATGIPARFTGSGSGTDFTLTISSLEPEDFAIYYCQQYRY-----SPRTFGQGTKV 103 usage_00150.pdb 50 AASTLQSGVPSRFSGSGSGTDFTLTISSLQPEDSATYYCQQSYS-----TPFTFGPGTKV 104 usage_00151.pdb 49 AASTLQSGVPSRFSGSGSGTDFTLTISSLQPEDVATYYCQRYNR-----APYTFGQGTKV 103 usage_00162.pdb 50 KASNLHTGVPSRFSGSGSGTGFTLTISSLQPEDIATYYCQQGQT-----YPYTFGGGTKL 104 usage_00172.pdb 50 NTDTLHTGVPSRFSGSGSGTQYSLKINSLQSEDVASYFCQHYFG-----YPRTFGGGTKL 104 usage_00174.pdb 49 AASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQANS-----FPITFGQGTRL 103 usage_00175.pdb 49 KASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATYHCQHYAG-----YSATFGQGTRV 103 usage_00190.pdb 54 WGSYLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQHYT-----TPPTFGQGTKV 108 usage_00216.pdb 49 SASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSFY-----FPNTFGQGTKV 103 usage_00219.pdb 56 WASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYS-----TPLTFGQGTKV 110 usage_00241.pdb 50 AASSLQGGVPSRFRGSGSGTEFTLTISGLQPEDFATYYCQQGST-----FPYTSVLGTIL 104 usage_00254.pdb 47 ATSNLASGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQHWSS-----KPPTFGQGTKV 101 usage_00255.pdb 47 ATSNLASGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQHWSS-----KPPTFGQGTKV 101 usage_00257.pdb 50 ETSTLASGVPSRFKGSGSGTDFTLTISDLECADAATYYCQSTYE---NPTYVSFGGGTEV 106 usage_00258.pdb 50 DASNVKTGVPSRFRGSGSGTDFTFTISSLQPEDIATYYCQQYDN-----LPITFGQGTRL 104 usage_00260.pdb 50 DASIRATGIPARFSGSGSGTDFTLTITRLEPEDFAVYYCQQRSM-----WPPVTFGQGTK 104 usage_00261.pdb 49 DASTLETGVPSRFSGSGSGTEYTFTISSLQPEDIATYYCQQYDD-----LPYTFGQGTKV 103 usage_00262.pdb 49 DASTLETGVPSRFSGSGSGTEYTFTISSLQPEDIATYYCQQYDD-----LPYTFGQGTKV 103 usage_00268.pdb 50 MASNLHTGVPSRFSGSGSGTGFTLTISSLQPEDIATYYCQQGQS-----FPLTFGGGTKL 104 usage_00275.pdb 49 DTSKLASGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCFQGSG-----YPFTFGGGTKV 103 usage_00276.pdb 49 DTSKLASGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCFQGSG-----YPFTFGGGTKV 103 usage_00277.pdb 49 DTSKLASGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCFQGSG-----YPFTFGGGTKV 103 usage_00287.pdb 49 YTSTLQPGIPSRFSGSGSGRDYSFSISNLEPEDIATYYCLQYDN-----LRTFGGGTKLE 103 usage_00301.pdb 50 YTSKLHSGVPSRFSGSGSGTDYTLTISSLQQEDFATYFCLQGKM-----LPWTFGQGTKL 104 usage_00302.pdb 49 YTSKLHSGVPSRFSGSGSGTDYTLTISSLQQEDFATYFCLQGKM-----LPWTFGQGTKL 103 G RF G GSg I D A Y C usage_00024.pdb 103 EL--- 104 usage_00025.pdb 103 EL--- 104 usage_00026.pdb 103 EL--- 104 usage_00027.pdb 103 EL--- 104 usage_00028.pdb 104 LEI-- 106 usage_00029.pdb 103 LEI-- 105 usage_00037.pdb 104 QI--- 105 usage_00038.pdb 104 QI--- 105 usage_00039.pdb 109 VVKRT 113 usage_00040.pdb 104 EI--- 105 usage_00041.pdb 104 EI--- 105 usage_00042.pdb 105 EI--- 106 usage_00043.pdb 105 EI--- 106 usage_00051.pdb 104 EI--- 105 usage_00052.pdb 104 EI--- 105 usage_00065.pdb 104 EIKRT 108 usage_00068.pdb 104 I---- 104 usage_00076.pdb 104 EIKRT 108 usage_00077.pdb 105 EI--- 106 usage_00084.pdb 103 QI--- 104 usage_00089.pdb 105 LEI-- 107 usage_00108.pdb 104 I---- 104 usage_00109.pdb 104 I---- 104 usage_00112.pdb 109 EL--- 110 usage_00117.pdb 105 EV--- 106 usage_00118.pdb 104 EVK-- 106 usage_00139.pdb 104 DI--- 105 usage_00147.pdb 104 EI--- 105 usage_00148.pdb 104 EI--- 105 usage_00149.pdb 104 EI--- 105 usage_00150.pdb 105 DI--- 106 usage_00151.pdb 104 EI--- 105 usage_00162.pdb 105 EIKRA 109 usage_00172.pdb 105 ELKRA 109 usage_00174.pdb 104 EI--- 105 usage_00175.pdb 104 EI--- 105 usage_00190.pdb 109 EI--- 110 usage_00216.pdb 104 EI--- 105 usage_00219.pdb 111 EI--- 112 usage_00241.pdb 105 GIPGT 109 usage_00254.pdb 102 EVKRT 106 usage_00255.pdb 102 EVKRT 106 usage_00257.pdb 107 GVKGD 111 usage_00258.pdb 105 EI--- 106 usage_00260.pdb 105 LEI-- 107 usage_00261.pdb 104 EI--- 105 usage_00262.pdb 104 EI--- 105 usage_00268.pdb 105 EI--- 106 usage_00275.pdb 104 EI--- 105 usage_00276.pdb 104 EI--- 105 usage_00277.pdb 104 EI--- 105 usage_00287.pdb 104 I---- 104 usage_00301.pdb 105 EI--- 106 usage_00302.pdb 104 EI--- 105 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################