################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 03:33:01 2021 # Report_file: c_0145_20.html ################################################################################################ #==================================== # Aligned_structures: 27 # 1: usage_00030.pdb # 2: usage_00032.pdb # 3: usage_00077.pdb # 4: usage_00129.pdb # 5: usage_00251.pdb # 6: usage_00264.pdb # 7: usage_00296.pdb # 8: usage_00304.pdb # 9: usage_00348.pdb # 10: usage_00350.pdb # 11: usage_00444.pdb # 12: usage_00448.pdb # 13: usage_00460.pdb # 14: usage_00466.pdb # 15: usage_00467.pdb # 16: usage_00471.pdb # 17: usage_00472.pdb # 18: usage_00504.pdb # 19: usage_00505.pdb # 20: usage_00506.pdb # 21: usage_00514.pdb # 22: usage_00538.pdb # 23: usage_00545.pdb # 24: usage_00547.pdb # 25: usage_00548.pdb # 26: usage_00559.pdb # 27: usage_00564.pdb # # Length: 142 # Identity: 25/142 ( 17.6%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 32/142 ( 22.5%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 43/142 ( 30.3%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00030.pdb 1 QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTASY 60 usage_00032.pdb 1 -VQLVQSGAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNY 59 usage_00077.pdb 1 -VQLQQSGAEVKKPGSSVKVSCKASGGTFSSYTISWVRQAPGQGLEWMGGITPILGIANY 59 usage_00129.pdb 1 -VQLLQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPVFGSANY 59 usage_00251.pdb 1 --QLVQSGAEVKKPGSSVKVSCKA------NYAINWVRQAPGQGLEWMGNIEPYFGTANY 52 usage_00264.pdb 1 --QLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANY 58 usage_00296.pdb 1 --QLVQSGAEVKKPGSSVKVSCKSSGGTSNNYAISWVRQAPGQGLDWMGGISPIFGSTAY 58 usage_00304.pdb 1 -VQLVQSGSEVKKPGSSVTLSCKASGDTFNTHTYSWVRQAPGQRLEWIGGIMPIFAASKS 59 usage_00348.pdb 1 --QLVESGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHY 58 usage_00350.pdb 1 --QLVQSGAEVKKPGSSVKVSCEASGGTLSNYVITWVRQAPGQGLEWMGGFIPTFRTAMY 58 usage_00444.pdb 1 -VQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANY 59 usage_00448.pdb 1 -VQLVQSGAEVKKPGASVKVSCKASGYIFSNYWIQWVRQAPGQGLEWMGEILPGSGSTEY 59 usage_00460.pdb 1 -VQLVQSGAEVKKPGSSVKVSCRASRGTFSSYGITWVRQAPGQGLEWMGGIIPIFDVTNY 59 usage_00466.pdb 1 -VQLVESEAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGTIPIFGTADY 59 usage_00467.pdb 1 -VQLVESEAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGTIPIFGTADY 59 usage_00471.pdb 1 QVQLVQSGAEVKKPGSSVKVSCKSSGGTSNNYAISWVRQAPGQGLDWMGGISPIFGSTAY 60 usage_00472.pdb 1 QVQLVQSGAEVKKPGSSVKVSCKSSGGTSNNYAISWVRQAPGQGLDWMGGISPIFGSTAY 60 usage_00504.pdb 1 -VQLVESGADMKPPGSSVKVPCKASGDTFSSYTITWVRQAPGQGLEWMGGITPIFGSPNY 59 usage_00505.pdb 1 -VQLVESGAEVKKPGSSVKVSCKASGGTFITHVFTWVRQAPGQGLEWVGGFIAIFGTSNY 59 usage_00506.pdb 1 EVQLVESGAEVKKPGSSVKVSCKASGGTFITHVFTWVRQAPGQGLEWVGGFIAIFGTSNY 60 usage_00514.pdb 1 -VQLVQSGAEVKKPGSSVKVSCKTSGGTFNNVAINWVRQAPGQGLEWMGGIIPGLDTPNY 59 usage_00538.pdb 1 QVQLVQSGAEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIY 60 usage_00545.pdb 1 EVQLVESGAEVKKPGSSVKVSCRASG-TFYKYAINWVRQAPGQGLEWMGGIIPFFGTTNY 59 usage_00547.pdb 1 QVQLVQSGAEVKKPGSSVKVSCKSSGGTSNNYAISWVRQAPGQGLDWMGGISPIFGSTAY 60 usage_00548.pdb 1 QVQLVQSGAEVKKPGSSVKVSCKSSGGTSNNYAISWVRQAPGQGLDWMGGISPIFGSTAY 60 usage_00559.pdb 1 --QLVESGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHY 58 usage_00564.pdb 1 -VQLVQSGAEVKKPGSSVKVSCKTSGDTFSTYAISWVRQAPGQGLEWMGGIIPIFGKAHY 59 QL S evK PG S sC WVRQ PG gL W G y usage_00030.pdb 61 AQKFQGRVTITADKSTSTAYMELSSLRSEDTAVYYCARVGYCSSTSC--------N---- 108 usage_00032.pdb 60 APRFQGRITITADRSTSTAYLELNSLRPEDTAVYYCAREGTTG--WGW---L-GKP---- 109 usage_00077.pdb 60 AQKFQGRVTITTDESTSTAYMELSSLRSEDTAVYYCARDTV-----M------------- 101 usage_00129.pdb 60 AQKFQGRVTITADEATSTTYMELSSLRSEDTAVYFCAKGG-------------------- 99 usage_00251.pdb 53 AQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCARYFMS---Y---------K---- 96 usage_00264.pdb 59 AQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCAREPDYY---DS---SGYYP---- 108 usage_00296.pdb 59 AQKFQGRVTISADIFSNTAYMELNSLTSEDTAVYFCARHGN----YY--------Y---- 102 usage_00304.pdb 60 APHLQDRLTITANKATRTAYMELTSLTSDDSGVYYCARDGR----G-------------- 101 usage_00348.pdb 59 SPSFEGQVTMSVDKSISTAYLQWTTLQASDTGKYFCTRLYLFE---GA---Q---S---- 105 usage_00350.pdb 59 AQGFQGRVTITADESTSIAYMELTNLRSEDTAVYYCARGPL--------------S---- 100 usage_00444.pdb 60 AQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCARYDG------------------- 100 usage_00448.pdb 60 TENFKDRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARYFFGS---S--------P---- 104 usage_00460.pdb 60 AQNFQGRVAITTDAEMSTAYMELRSLKSEDSAVYYCASDSR----D--FSH----Y---- 105 usage_00466.pdb 60 AQEFQGRVTITTDESTSTAYMELSGLRSEDTAVYYCVLLGTTM--VT--------G---- 105 usage_00467.pdb 60 AQEFQGRVTITTDESTSTAYMELSGLRSEDTAVYYCVLLGTTM--VT--------G---- 105 usage_00471.pdb 61 AQKFQGRVTISADIFSNTAYMELNSLTSEDTAVYFCARHGN----YY--------Y---- 104 usage_00472.pdb 61 AQKFQGRVTISADIFSNTAYMELNSLTSEDTAVYFCARHGN----YY--------Y---- 104 usage_00504.pdb 60 AQRFQDRVIITADESTSTAYMEVSNLRSEDTAVYFCARVGG----EWG-------S---- 104 usage_00505.pdb 60 AQKFQGRVTITADESTSTAYMELTSLTSEDTAVYYCARGIS----GS------------- 102 usage_00506.pdb 61 AQKFQGRVTITADESTSTAYMELTSLTSEDTAVYYCARGIS----GS------------- 103 usage_00514.pdb 60 AQKFQGRVTITADKSTTSTYLELSSLRSDDTAVYYCAREME-VSGR-----------W-- 105 usage_00538.pdb 61 AREFQGSVTMTADTSTNIAYMELSSLRSDDTAVYYCAVPDP----D-------------- 102 usage_00545.pdb 60 AQKFQGRLTITADGSTNTAYMQLDSLRSEDTAVYYCAGPSITESHYC--------LDCAA 111 usage_00547.pdb 61 AQKFQGRVTISADIFSNTAYMELNSLTSEDTAVYFCARHGN----YY--------Y---- 104 usage_00548.pdb 61 AQKFQGRVTISADIFSNTAYMELNSLTSEDTAVYFCARHGN----YY--------Y---- 104 usage_00559.pdb 59 SPSFEGQVTMSVDKSISTAYLQWTTLQASDTGKYFCTRLYLFE---GA---Q---S---- 105 usage_00564.pdb 60 AQKFQGRVTITADESTSTAYMELSSLRSEDTAVYFCARKFHF----V--------S-G-- 104 f d Y L D Y C usage_00030.pdb 109 ---R-GA--FDIWGQGTMVTVS 124 usage_00032.pdb 110 ---I-GA--FAHWGQGTLVTVS 125 usage_00077.pdb 102 -----GG--MDVWGQGTTVTVS 116 usage_00129.pdb 100 -----HG--MDVWGQGTTVTVA 114 usage_00251.pdb 97 -----HL--SDYWGQGTLVTVS 111 usage_00264.pdb 109 ---I-DA--FDIWGQ------- 117 usage_00296.pdb 103 ---Y-SG--MDVWGQGTTVTVS 118 usage_00304.pdb 102 ------A--LQYWGQGTLVTVS 115 usage_00348.pdb 106 ---S-NA--FDLWGQGTMILVS 121 usage_00350.pdb 101 ---R-GY--YDYWGQGTLVTVS 116 usage_00444.pdb 101 -----IYGELDFWGQGTLVTVS 117 usage_00448.pdb 105 ---N-WY--FDVWGQGTLVTV- 119 usage_00460.pdb 106 ---Y-NI--MDVWGQGTTVTVS 121 usage_00466.pdb 106 -----HY--FDYWGQGTLVTVS 120 usage_00467.pdb 106 -----HY--FDYWGQGTLVTVS 120 usage_00471.pdb 105 ---Y-SG--MDVWGQGTTVTVS 120 usage_00472.pdb 105 ---Y-SG--MDVWGQGTTVTVS 120 usage_00504.pdb 105 ---GRYY--LDHWGQGTLVTV- 120 usage_00505.pdb 103 ---Y-GW--FDPWGQGTLVTVS 118 usage_00506.pdb 104 ---Y-GW--FDPWGQGTLVTVS 119 usage_00514.pdb 106 -RPT-EA--FEIWGQGTMVTVS 123 usage_00538.pdb 103 ------A--FDIWGQGTMVTVS 116 usage_00545.pdb 112 KDYY-YG--LDVWGQGTTVTV- 129 usage_00547.pdb 105 ---Y-SG--MDVWGQGTTVTVS 120 usage_00548.pdb 105 ---Y-SG--MDVWGQGTTVTVS 120 usage_00559.pdb 106 ---S-NA--FDLWGQGTMILVS 121 usage_00564.pdb 105 -S-P-FG--MDVWGQGTTVTVS 121 WGQ #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################