################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:18:03 2021 # Report_file: c_1394_67.html ################################################################################################ #==================================== # Aligned_structures: 18 # 1: usage_00075.pdb # 2: usage_00267.pdb # 3: usage_00397.pdb # 4: usage_00399.pdb # 5: usage_00419.pdb # 6: usage_00652.pdb # 7: usage_00670.pdb # 8: usage_00735.pdb # 9: usage_00736.pdb # 10: usage_00738.pdb # 11: usage_00773.pdb # 12: usage_00824.pdb # 13: usage_00827.pdb # 14: usage_00828.pdb # 15: usage_01000.pdb # 16: usage_01206.pdb # 17: usage_01270.pdb # 18: usage_01278.pdb # # Length: 108 # Identity: 3/108 ( 2.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 14/108 ( 13.0%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 93/108 ( 86.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00075.pdb 1 --------------------------------------ATTQKAEKEVTRMVIIMVIAFL 22 usage_00267.pdb 1 -NNESFVIYMFVVHFIIPLIVIFFCYGQL-----------TQKAEKEVTRMVIIMVIAFL 48 usage_00397.pdb 1 --------------------------------------ATTQKAEKEVTRMVIIYVIAFL 22 usage_00399.pdb 1 --------------------------------------ATTQKAEKEVTRMVIIYVIAFL 22 usage_00419.pdb 1 ----------------IPLIVIFFCYGQLVFTVKEAAAATTQKAEKEVTRMVIIMVIAFL 44 usage_00652.pdb 1 ------------------------------------------------ICWLPYAGVAFY 12 usage_00670.pdb 1 --------------------------------------ATTQKAEKEVTRMVIIYVIAFL 22 usage_00735.pdb 1 --------------------------------------ATTQKAEKEVTRMVIIYVIAFL 22 usage_00736.pdb 1 --------------------------------------ATTQKAEKEVTRMVIIYVIAFL 22 usage_00738.pdb 1 --------------------------------------ATTQKAEKEVTRMVIIYVIAFL 22 usage_00773.pdb 1 S-------------------------------------ATTQKAEKEVTRMVIIMVIAFL 23 usage_00824.pdb 1 --------------------------------------ATTQKAEKEVTRMVIIMVIAFL 22 usage_00827.pdb 1 --------------------------------------ATTQKAEKEVTRMVIIMVIAFL 22 usage_00828.pdb 1 --------------------------------------ATTQKAEKEVTRMVIIMVIAFL 22 usage_01000.pdb 1 --------------------------------------ATTQKAEKEVTRMVIIMVIAFL 22 usage_01206.pdb 1 S-------------------------------------ATTQKAEKEVTRMVIIMVIAFL 23 usage_01270.pdb 1 ---------------------------------------TTQKAEKEVTRMVIIMVIAFL 21 usage_01278.pdb 1 ---------------------------------------TTQKAEKEVTRMVIIMVIAFL 21 trmvii viAFl usage_00075.pdb 23 ICWLPYAGVAFYIFTHQGSDFGPIFMTIP-AFFAKTSAV--------- 60 usage_00267.pdb 49 ICWLPYAGVAFYIFTH-------------------------------- 64 usage_00397.pdb 23 ICWVPYASVAFYIFTHQGSCFGPIFMTIP-AFFAKSAAI--------- 60 usage_00399.pdb 23 ICWVPYASVAFYIFTHQGSCFGPIFMTIP-AFFAKSAAI--------- 60 usage_00419.pdb 45 ICWLPYAGVAFYIFT--------------------------------- 59 usage_00652.pdb 13 IFT------------HQG-----SDFGPIFMTIPAFFAK-TSA---VY 39 usage_00670.pdb 23 ICWLPYAGVAFYIFTHQGSCFGPIFMTIP-AFFAKTSAVYNPVI---- 65 usage_00735.pdb 23 ICWVPYASVAFYIFTHQGSCFGPIFMTIP-AFFAKSAAI--------- 60 usage_00736.pdb 23 ICWVPYASVAFYIFTHQGSCFGPIFMTIP-AFFAKSAAI--------- 60 usage_00738.pdb 23 ICWVPYASVAFYIFTHQGSCFGPIFMTIP-AFFAKSAAI--------- 60 usage_00773.pdb 24 ICWLPYAGVAFYIFTHQGSCFGPIFMTIP-AFFAKTSAV--------- 61 usage_00824.pdb 23 ICWLPYAGVAFYIFTHQGSCFGPIFMTIP-AFFAKTSAVYNPVI---- 65 usage_00827.pdb 23 ICWLPYAGVAFYIFTHQGSCFGPIFMTIP-AFFAKTSAVYNPVI---- 65 usage_00828.pdb 23 ICWLPYAGVAFYIFTHQGSCFGPIFMTIP-AFFAKTSAVYNPVI---- 65 usage_01000.pdb 23 ICWLPYAGVAFYIFTHQGSDFGPIFMTIP-AFFAKTSAV--------- 60 usage_01206.pdb 24 ICWLPYAGVAFYIFTHQGSCFGPIFMTIP-AFFAKTSAVYNPVI---- 66 usage_01270.pdb 22 ICWLPYAGVAFYIFTHQGSDFGPIFMTIP-AFFAKTSAV--------- 59 usage_01278.pdb 22 ICWLPYAGVAFYIFTHQGSDFGPIFMTIP-AFFAKTSAVYNPVIYIM- 67 Icw #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################