################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:47:17 2021 # Report_file: c_0194_2.html ################################################################################################ #==================================== # Aligned_structures: 8 # 1: usage_00020.pdb # 2: usage_00233.pdb # 3: usage_00234.pdb # 4: usage_00240.pdb # 5: usage_00263.pdb # 6: usage_00266.pdb # 7: usage_00386.pdb # 8: usage_00587.pdb # # Length: 313 # Identity: 24/313 ( 7.7%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 41/313 ( 13.1%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 168/313 ( 53.7%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00020.pdb 1 --TRLELLKMHHDVVTAGNAMKPDALQP----TK--GNFTFTAADAMIDKVLAEGMKMHG 52 usage_00233.pdb 1 NSSIKALILREFNSITCENEMKPDATLVQSGSTNTNIRVSLNRAASILNFCAQNNIAVRG 60 usage_00234.pdb 1 -SSIKALILREFNSITCENEMKPDATLVQSGSTNTNIRVSLNRAASILNFCAQNNIAVRG 59 usage_00240.pdb 1 -AQYKAIADSEFNLVVAENAMKWDATEP----SQ--NSFSFGAGDRVASYAADTGKELYG 53 usage_00263.pdb 1 NSSIKALILREFNSITCENE-KPDATLVQSGSTNTNIRVSLNRAASILNFCAQNNIAVRG 59 usage_00266.pdb 1 -SSIKALILREFNSITCENE-KPDATLVQSGSTNTNIRVSLNRAASILNFCAQNNIAVRG 58 usage_00386.pdb 1 -----------------------------------------EDADKIADFCRANGIKMRG 19 usage_00587.pdb 1 NEKDVQMLKRHFNSIVAENVMKPISIQP----EE--GKFNFEQADRIVKFAKANGMDIRF 54 a g usage_00020.pdb 53 HVLVWHQQSPAWLNT-KKDDNNN-----TVPL-------GRDEALDNLRTHIQTV----M 95 usage_00233.pdb 61 HTLVWHSQTPQWFFKDN------FQDN-GNWV-------SQSVMDQRLESYIKNMFAEIQ 106 usage_00234.pdb 60 HTLVWHSQTPQWFFKDN------FQDN-GNWV-------SQSVMDQRLESYIKNMFAEIQ 105 usage_00240.pdb 54 HTLVWHSQLPDWAKN----------------L-------NGSAFESAMVNHVTKV----A 86 usage_00263.pdb 60 HTLVWHSQTPQWFFKDN------FQDN-GNWV-------SQSV-DQRLESYIKNF-AEIQ 103 usage_00266.pdb 59 HTLVWHSQTPQWFFKDN------FQDN-GNWV-------SQSV-DQRLESYIKNF-AEIQ 102 usage_00386.pdb 20 HTLMWHSQIGSWMYQ-------------GNLL-------SKEEFYANMKHHIQAI----V 55 usage_00587.pdb 55 HTLVWHSQVPQWFFLDK---E--GKPMVNE-TDPVKREQNKQLLLKRLETHIKTI----V 104 HtLvWHsQ p W i usage_00020.pdb 96 KHFGN-KVISWDVVNEAMNDNPSNPADYK-------ASLR-------QTPWYQAI-GSDY 139 usage_00233.pdb 107 RQYPSLNLYAYDVVNAAVSDD---A-NRTRYY----GGAREPGYGNGRSPWVQIYGDNKF 158 usage_00234.pdb 106 RQYPSLNLYAYDVVNAAVSDD---A-NRTRYY----GGAREPGYGNGRSPWVQIYGDNKF 157 usage_00240.pdb 87 DHFEG-KVASWDVVNAAFADG----------------GGRRQ-----DSAFQQKL-GNGY 123 usage_00263.pdb 104 RQYPSLNLYAYDVVNAAVSDD---A-NRTRYY----GGAREPGYGNGRSPWVQIYGDNKF 155 usage_00266.pdb 103 RQYPSLNLYAYDVVNAAVSDD---A-NRTRYY----GGAREPGYGNGRSPWVQIYGDNKF 154 usage_00386.pdb 56 NRYKD-VVYCWDVVNEAVADS---P-V-----YPGRPELR-------NSPMYQIA-GEEF 97 usage_00587.pdb 105 ERYKD-DIKYWDVVNAVVGDD----------------GKLR------NSPWYQIA-GIDY 140 DVVN a D r sp Q usage_00020.pdb 140 VEQAFLAAREVLDENPSWNIKLYYNDYNE-DNQNKATAIYNMVKDINDRYAAAHNGKLL- 197 usage_00233.pdb 159 IEKAFTYARKYA----PANCKLYYNDYNE-YWDHKRDCIASICANLYNKG--------L- 204 usage_00234.pdb 158 IEKAFTYARKYA----PANCKLYYNDYNE-YWDHKRDCIASICANLYNKG--------L- 203 usage_00240.pdb 124 IETAFRAARAAD----P-TAKLCINDYNVEGINAKSNSLYDLVKDFKARG--------VP 170 usage_00263.pdb 156 IEKAFTYARKYA----PANCKLYYNDYNE-YWDHKRDCIASICANLYNKG--------L- 201 usage_00266.pdb 155 IEKAFTYARKYA----PANCKLYYNDYNE-YWDHKRDCIASICANLYNKG--------L- 200 usage_00386.pdb 98 IYKAFEYAHEAD----P-DALLFYNDYND-AEPAKSQRIYNLVKRMKDAG--------VP 143 usage_00587.pdb 141 IKVAFQAARKYG----GDNIKLYMNDYNT-EVEPKRTALYNLVKQLKEEG--------VP 187 i AF Ar kL NDYN K g usage_00020.pdb 198 IDGVGMQGHYNIN----T-NPDNVKLSLEKFIS--------------------------- 225 usage_00233.pdb 205 LDGVGMQSHINADMNGFS-GIQNYKAALQKYINI-------------------------- 237 usage_00234.pdb 204 LDGVGMQSHINADMNGFS-GIQNYKAALQKYINI-------------------------- 236 usage_00240.pdb 171 LDCVGFQSNLIVG----QV-PGDFRQNLQRFAD--------------------------- 198 usage_00263.pdb 202 LDGVG-QSHINAD-NGFS-GIQNYKAALQKYIN--------------------------- 231 usage_00266.pdb 201 LDGVG-QSHINAD-NGFS-GIQNYKAALQKYIN--------------------------- 230 usage_00386.pdb 144 IDGIGMQAHYNVY----GPTMKEVDDAIKLYSTVVDHIHLTELDIRINEVSDWERTLQQD 199 usage_00587.pdb 188 IDGIGHQSHIQIG----WP-S--------------------------------------- 203 Dg G Q h usage_00020.pdb ------------- usage_00233.pdb ------------- usage_00234.pdb ------------- usage_00240.pdb ------------- usage_00263.pdb ------------- usage_00266.pdb ------------- usage_00386.pdb 200 QYVQLFKVLRKHK 212 usage_00587.pdb ------------- #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################