################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:46:49 2021 # Report_file: c_0136_7.html ################################################################################################ #==================================== # Aligned_structures: 8 # 1: usage_00001.pdb # 2: usage_00023.pdb # 3: usage_00029.pdb # 4: usage_00030.pdb # 5: usage_00031.pdb # 6: usage_00032.pdb # 7: usage_00045.pdb # 8: usage_00073.pdb # # Length: 198 # Identity: 19/198 ( 9.6%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 44/198 ( 22.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 66/198 ( 33.3%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 FPKDINM--ILSMMDIN---PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHD 55 usage_00023.pdb 1 -PKDAAQ--IVHEGDIF---PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAE 54 usage_00029.pdb 1 APKDASA--MVTLLDLA---PGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLA 55 usage_00030.pdb 1 APKDASA--MVTLLDLA---PGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLA 55 usage_00031.pdb 1 YPKDASA--MVTLLDLA---PGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLA 55 usage_00032.pdb 1 YPKDASA--MVTLLDLA---PGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLA 55 usage_00045.pdb 1 -------SPYFGRVI--CGLRPGDILEVGVGSGN-SSYILYALNGKGTLTVVERDEDNLK 50 usage_00073.pdb 1 YPKDASA--MVTLLDLA---PGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLA 55 d pg vLEaG GSG l l Avg G v s E r h usage_00001.pdb 56 LAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGA-----TFDAVALDMLNPHVTLPVFY 110 usage_00023.pdb 55 HARRNVSGCYG--------QPPDNWRLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAVS 106 usage_00029.pdb 56 QAERNVRAFWQ----------VENVRFHLGKLEEAELEEAAYDGVALDLMEPWKVLEKAA 105 usage_00030.pdb 56 QAERNVRAFWQ----------VENVRFHLGKLEEAELEEAAYDGVALDLMEPWKVLEKAA 105 usage_00031.pdb 56 QAERNVRAFWQ----------VENVRFHLGKLEEAELEEAAYDGVALALMEPWKVLEKAA 105 usage_00032.pdb 56 QAERNVRAFWQ----------VENVRFHLGKLEEAELEEAAYDGVALALMEPWKVLEKAA 105 usage_00045.pdb 51 KA-DNLSEFYD----------IGNVRTSRSDIADFISD--QYDAVIADIPDPWNHVQKIA 97 usage_00073.pdb 56 QAERNVRAFWQ----------VENVRFHLGKLEEAELEEAAYDGVALDLMEPWKVLEKAA 105 A N Nvr D v l Pw l usage_00001.pdb 111 PHLKHGGVCAVYVVNITQVIELLDGIRTCEL-ALSCEKISEVIVRDWLVCL-VARP---V 165 usage_00023.pdb 107 RLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTE--PRAWETLQRGWNVVGLAVRP---Q 161 usage_00029.pdb 106 LALKPDRFLVAYLPNITQVLELVRAAEAHPF-RL--ERVLEVGWREWEVRLPVAHP---R 159 usage_00030.pdb 106 LALKPDRFLVAYLPNITQVLELVRAAEAHPF-RL--ERVLEVGWREWEVRLPVAHP---R 159 usage_00031.pdb 106 LALKPDRFLVAYLPNITQVLELVRAAEAHPF-RL--ERVLEVGWREWEVRLPVAHP---R 159 usage_00032.pdb 106 LALKPDRFLVAYLPNITQVLELVRAAEAHPF-RL--ERVLEVGWREWEVRLPVAHP---R 159 usage_00045.pdb 98 S--KPGSVATFYLPNFDQSEKTVLSLSASG--HH--LETVELK-RRILVR--EGATRPAS 148 usage_00073.pdb 106 LALKPDRFLVAYLPNITQVLELVRAAEAHPF-RL--ERVLEVGWREWEVR---------- 152 k Y n tQ v a E R w V usage_00001.pdb 166 HWQPGHTAFLVKLR---- 179 usage_00023.pdb 162 HSMRGHTAFLVAT----- 174 usage_00029.pdb 160 FQQVGHTAFLVALR---- 173 usage_00030.pdb 160 FQQVGHTAFLVALR---- 173 usage_00031.pdb 160 FQQVGHTAFLVALR---- 173 usage_00032.pdb 160 FQQVGHTAFLVALRRWKG 177 usage_00045.pdb 149 DDL-THTAFITFAI---- 161 usage_00073.pdb ------------------ #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################