################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:02:39 2021 # Report_file: c_0233_3.html ################################################################################################ #==================================== # Aligned_structures: 9 # 1: usage_00069.pdb # 2: usage_00105.pdb # 3: usage_00106.pdb # 4: usage_00107.pdb # 5: usage_00108.pdb # 6: usage_00109.pdb # 7: usage_00114.pdb # 8: usage_00115.pdb # 9: usage_00118.pdb # # Length: 167 # Identity: 67/167 ( 40.1%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 110/167 ( 65.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 38/167 ( 22.8%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00069.pdb 1 ALYRVVLLGDPGVGKTSLASLFAGKHEQLGE-DVYERTLTVDGEDTTLVVVDTWE-SWS- 57 usage_00105.pdb 1 SVYKVLLLGAPGVGKSALARIFGGV-------HTYDRSIVVDGEEASLMVYDIW------ 47 usage_00106.pdb 1 ---KVLLLGAPGVGKSALARIFGGV---A-G-HTYDRSIVVDGEEASLMVYDIW------ 46 usage_00107.pdb 1 SVYKVLLLGAPGVGKSALARIFGG--------HTYDRSIVVDGEEASLMVYDIW-----E 47 usage_00108.pdb 1 SVYKVLLLGAPGVGKSALARIFGGV------EHTYDRSIVVDGEEASLMVYDIW------ 48 usage_00109.pdb 1 GVFKVMLVGESGVGKSTLAGTFGGL-------DTYERRIMVDKEEVTLIVYDIWEQ---- 49 usage_00114.pdb 1 SVYKVLLLGAPGVGKSALARIFGGV------EHTYDRSIVVDGEEASLMVYDIW------ 48 usage_00115.pdb 1 --YKVLLLGAPGVGKSALARIFGGV------EHTYDRSIVVDGEEASLMVYDIW------ 46 usage_00118.pdb 1 ---KVLLLGAPGVGKSALARIFGGV------EHTYDRSIVVDGEEASLMVYDI------- 44 kV LlG pGVGKs LA FgG tY R i VDgEe L VyDi usage_00069.pdb 58 -Q-ESCL-QGGSAYVIVYSIADRGSFESASELRIQLRRTHQ--ADHVPIILVGNKADLAR 112 usage_00105.pdb 48 ----------GDAYVIVYSVTDKGSFEKASELRVQLRRAR-----DVPIILVGNKSDLVR 92 usage_00106.pdb 47 -------EAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ---DDVPIILVGNKSDLVR 96 usage_00107.pdb 48 C-----M-AMGDAYVIVYSVTDKGSFEKASELRVQLRRAR-----DVPIILVGNKSDLVR 96 usage_00108.pdb 49 -------EAMGDAYVIVYSVTDKGSFEKASELRVQLRRART---DDVPIILVGNKSDLVR 98 usage_00109.pdb 50 ---DHCL-QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH--DLPVILVGNKSDLAR 103 usage_00114.pdb 49 -LPGHCM-AMGDAYVIVYSVTDKGSFEKASELRVQLRRAR-----DVPIILVGNKSDLVR 101 usage_00115.pdb 47 ---------MGDAYVIVYSVTDKGSFEKASELRVQLRRA-------VPIILVGNKSDLVR 90 usage_00118.pdb 45 ---------MGDAYVIVYSVTDKGSFEKASELRVQLRRAR-----DVPIILVGNKSDLVR 90 GdAyvIVySvtD gSFekasElr qLRr vPiILVGNKsDL R usage_00069.pdb 113 CREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLR-- 157 usage_00105.pdb 93 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRR- 138 usage_00106.pdb 97 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRL--- 140 usage_00107.pdb 97 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRR- 142 usage_00108.pdb 99 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRR- 144 usage_00109.pdb 104 SREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRR- 149 usage_00114.pdb 102 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR-- 146 usage_00115.pdb 91 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR-- 135 usage_00118.pdb 91 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRD 137 sREVSv EGRacAvvfdCKfIETSAaLhHNv LFEGvVRQiRL #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################