################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:01:00 2021 # Report_file: c_0457_31.html ################################################################################################ #==================================== # Aligned_structures: 13 # 1: usage_00007.pdb # 2: usage_00008.pdb # 3: usage_00020.pdb # 4: usage_00064.pdb # 5: usage_00174.pdb # 6: usage_00183.pdb # 7: usage_00244.pdb # 8: usage_00249.pdb # 9: usage_00250.pdb # 10: usage_00273.pdb # 11: usage_00323.pdb # 12: usage_00324.pdb # 13: usage_00339.pdb # # Length: 98 # Identity: 4/ 98 ( 4.1%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 10/ 98 ( 10.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 23/ 98 ( 23.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00007.pdb 1 ---LVIDFYATWCGPCKMMQPHLTKLIQAYP-----DVRFVKCDVDESPDIAKECEVTAM 52 usage_00008.pdb 1 ---LVIDFYATWCGPCKMMQPHLTKLIQAYP-----DVRFVKCDVDESPDIAKECEVTAM 52 usage_00020.pdb 1 --PVLVDFWATWCGPCKMVAPVLEEIASERG----DHLTVAKLDVDANPETAQNFQVVSI 54 usage_00064.pdb 1 ---ILVEFYAPWCGHCKKLAPEYEKAAKELSKRS-PPIPLAKVDATEQTDLAKRFDVSGY 56 usage_00174.pdb 1 --PVVVDFHAQWCGPCKILGPRLEKMVAKQH----GKVVMAKVDIDDHTDLAIEYEVSAV 54 usage_00183.pdb 1 -DVRILIFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAV 59 usage_00244.pdb 1 -DVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGF 59 usage_00249.pdb 1 --PVLVDFWAPWCGPCRMIAPIIEELAKEYE----GKVKVVKVNVDENPNTAAQYGIRSI 54 usage_00250.pdb 1 NKVVVVDFWAEWCGPCRMIAPIIEELAKEYA----GKVVFGKLNVDENPEIAAKYGIMSI 56 usage_00273.pdb 1 --PVLVDFWATWCGPCKMVAPVLEEIAKDHG----EALTIAKLDVDANPETARAFQVTSI 54 usage_00323.pdb 1 ----LVDFWATWCGPSKMVAPVLEEIATERA----TDLTVAKLDVDTNPETARNFQVVSI 52 usage_00324.pdb 1 -KVIVIDFFATWCGPSRSISPYFEELAGQYN-----NIKFVKVDVDQAEEICVNYKVRSM 54 usage_00339.pdb 1 ----LVDFWAPWCGPCRMIAPIIEELAKEYE----GKVKVVKVNVDENPNTAAQYGIRSI 52 F a wCg p a usage_00007.pdb 53 PTFVLGKDG-QLIG-KIIGANP--TALEKGIKDL---- 82 usage_00008.pdb 53 PTFVLGKDG-QLIG-KIIGANP--TALEKGIKDL---- 82 usage_00020.pdb 55 PTLILFKDG-QPVK-RIVGAKGKAA-LLRELS------ 83 usage_00064.pdb 57 PTLKIFRKG-RPFDYNGP--REKYG-IVDYMIEQS--- 87 usage_00174.pdb 55 PTVLAMKNG-DVVD-KFVGIKDEDQ-LEAFLKKLI--- 86 usage_00183.pdb 60 PKIVIQVNG-EDKV-QFEGAYPEKM-FLEKLLSALS-- 92 usage_00244.pdb 60 PTIKIFQKGESPVDYDGG--RTRSD-IVSRALDLFSDN 94 usage_00249.pdb 55 PTLLLFKNG-QVVD-RLVGAQPKEA-LKERIDKHL--- 86 usage_00250.pdb 57 PTLLFFKNG-KVVD-QLVGAMPKEA-LKERIKKYL--- 88 usage_00273.pdb 55 PTLILFQNG-EATK-RIVGAKSKSA-LLRELD------ 83 usage_00323.pdb 53 PTLILFKDG-QPVK-RIVGAKGKAA-LLREL------- 80 usage_00324.pdb 55 PTFVLVKDG-IEQK-RFSGADR--NALKQMVETA---- 84 usage_00339.pdb 53 PTLLLFKNG-QVVD-RKVGAQPKEA-LKERIDKHL--- 84 Pt G #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################