################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:07:35 2021 # Report_file: c_1082_91.html ################################################################################################ #==================================== # Aligned_structures: 4 # 1: usage_00087.pdb # 2: usage_00171.pdb # 3: usage_00513.pdb # 4: usage_00514.pdb # # Length: 61 # Identity: 2/ 61 ( 3.3%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 29/ 61 ( 47.5%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 29/ 61 ( 47.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00087.pdb 1 ----WEQTMH----AIYERKKGRGFPQTFEVG-P--GRQLGAILKSCNMQAWKSYSAVD- 48 usage_00171.pdb 1 -DAWIEALISWR-S--------RP-SGNTLAAIPTGP-HIVGAINKERALRLGGFFSI-D 47 usage_00513.pdb 1 ---------S----GY-QHRPGRP-SGNTLAAIPTGP-HIVGAINKERALRLGGMFFS-I 43 usage_00514.pdb 1 YDAWIEALISWRMSGY-QHRPGRP-SGNTLAAIPTGP-HIVGAINKERALRLGGMFFS-I 56 s Rp sgntlaa P p hivgainkeralrlgg f usage_00087.pdb - usage_00171.pdb - usage_00513.pdb - usage_00514.pdb 57 D 57 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################