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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Wed Jan 20 23:10:13 2021
# Report_file: c_0016_1.html
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#====================================
# Aligned_structures: 5
#   1: usage_00018.pdb
#   2: usage_00019.pdb
#   3: usage_00025.pdb
#   4: usage_00026.pdb
#   5: usage_00027.pdb
#
# Length:        304
# Identity:      273/304 ( 89.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    280/304 ( 92.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           24/304 (  7.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00018.pdb         1  TEEMRK----AMAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMA   56
usage_00019.pdb         1  TEEMRK----AMAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMA   56
usage_00025.pdb         1  ------TEERKAAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGT-GNQVS-IA   52
usage_00026.pdb         1  TEEMRK----AMAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMA   56
usage_00027.pdb         1  TEEMRK----AMAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMA   56
                                     amAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGT GNQVS mA

usage_00018.pdb        57  HTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPR  116
usage_00019.pdb        57  HTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPR  116
usage_00025.pdb        53  HTQRGDEVILEADSHIFWYEVGAA-VLSG-VPHPVPGKNGA-DPDDVRKAIRPRNIHFPR  109
usage_00026.pdb        57  HTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPR  116
usage_00027.pdb        57  HTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPR  116
                           HTQRGDEVILEADSHIFWYEVGAm VLSG mPHPVPGKNGA DPDDVRKAIRPRNIHFPR

usage_00018.pdb       117  TSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAG  176
usage_00019.pdb       117  TSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAG  176
usage_00025.pdb       110  TSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAG  169
usage_00026.pdb       117  TSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAG  176
usage_00027.pdb       117  TSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAG  176
                           TSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAG

usage_00018.pdb       177  YADSVMFCLSGLCAPVGSVVVGDRDFIERARKARKMLGGG--MRQAGVLAAAGIIALTKM  234
usage_00019.pdb       177  YADSVMFCLSGLCAPVGSVVVGDRDFIERARKARKMLGGG--MRQAGVLAAAGIIALTKM  234
usage_00025.pdb       170  YADSV-FCLSGLCAPVGSVVVGDRDFIERARKARKL----GGGRQAGVLAAAGIIALTK-  223
usage_00026.pdb       177  YADSVMFCLSGLCAPVGSVVVGDRDFIERARKARKMLGGG--MRQAGVLAAAGIIALTKM  234
usage_00027.pdb       177  YADSVMFCLSGLCAPVGSVVVGDRDFIERARKARKMLGGG--MRQAGVLAAAGIIALTKM  234
                           YADSV FCLSGLCAPVGSVVVGDRDFIERARKARKm      mRQAGVLAAAGIIALTK 

usage_00018.pdb       235  VDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLKVNAHGFIEALRNSGVLA  294
usage_00019.pdb       235  VDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLKVNAHGFIEALRNSGVLA  294
usage_00025.pdb       224  VDRLKEDHENARFLALKLKEIGYSVNPEDVKTN-VILRTDNLKVNAHGFIEALRNSGVLA  282
usage_00026.pdb       235  VDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLKVNAHGFIEALRNSGVLA  294
usage_00027.pdb       235  VDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLKVNAHGFIEALRNSGVLA  294
                           VDRLKEDHENARFLALKLKEIGYSVNPEDVKTN VILRTDNLKVNAHGFIEALRNSGVLA

usage_00018.pdb       295  NAVS  298
usage_00019.pdb       295  NAVS  298
usage_00025.pdb       283  NAVS  286
usage_00026.pdb       295  NAVS  298
usage_00027.pdb       295  NAVS  298
                           NAVS


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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