################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:23:18 2021 # Report_file: c_0435_11.html ################################################################################################ #==================================== # Aligned_structures: 10 # 1: usage_00114.pdb # 2: usage_00271.pdb # 3: usage_00272.pdb # 4: usage_00273.pdb # 5: usage_00432.pdb # 6: usage_00433.pdb # 7: usage_00434.pdb # 8: usage_00435.pdb # 9: usage_00436.pdb # 10: usage_00582.pdb # # Length: 122 # Identity: 53/122 ( 43.4%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 84/122 ( 68.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 38/122 ( 31.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00114.pdb 1 --VMEGNLKQEDGTSLKVAVKTM-KLDNSSQRE-IEEFLSEAACMKDFSHPNVIRLLGVC 56 usage_00271.pdb 1 -SVMEGNLKQEDGTSLKVAVKT-------------------AACMKDFSHPNVIRLLGVC 40 usage_00272.pdb 1 -----GNLKQEDGTSLKVAVKTM-KLDNSSQRE-IEEFLSEAACMKDFSHPNVIRLLGVC 53 usage_00273.pdb 1 -----GNLKQEDGTSLKVAVKTM-KLDNSSQRE-IEEFLSEAACMKDFSHPNVIRLLGVC 53 usage_00432.pdb 1 -----GNLKQEDGTSLKVAVKTM-K------RE-IEEFLSEAACMKDFSHPNVIRLLGVC 47 usage_00433.pdb 1 -----GNLKQEDGTSLKVAVKTM-K--------LIEEFLSEAACMKDFSHPNVIRLLGVC 46 usage_00434.pdb 1 -----GNLKQEDGTSLKVAVKTM-K---------IEEFLSEAACMKDFSHPNVIRLLGVC 45 usage_00435.pdb 1 -----GNLKQEDGTSLKVAVKTM---NS-SQRE-IEEFLSEAACMKDFSHPNVIRLLGVC 50 usage_00436.pdb 1 -----GNLKQEDGTSLKVAVKTM-KLDNSSQRE-IEEFLSEAACMKDFSHPNVIRLLGVC 53 usage_00582.pdb 1 G----SVREAQL---VKVAVKMLS-------SD-IEEFLREAACMKEFDHPHVAKLVGVS 45 gnlkqed lKVAVKt AACMKdFsHPnVirLlGVc usage_00114.pdb 57 IEP------KPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSN 110 usage_00271.pdb 41 IEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSN 100 usage_00272.pdb 54 IE--------PMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSN 105 usage_00273.pdb 54 IEP------KPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSN 107 usage_00432.pdb 48 IEMSS-----PMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSN 102 usage_00433.pdb 47 IEM-------PMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSN 99 usage_00434.pdb 46 IEMSQ-----PMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSN 100 usage_00435.pdb 51 IE-------KPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSN 103 usage_00436.pdb 54 IEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSN 113 usage_00582.pdb 46 LRS------IPMVILPFMKHGDLHAFLLASRIP---FNLPLQTLVRFMVDIACGMEYLSS 96 ie PMVILPFMKyGDLHtyLLySRle khiPLQTLlkFMVDIAlGMEYLSn usage_00114.pdb 111 RN 112 usage_00271.pdb 101 RN 102 usage_00272.pdb 106 RN 107 usage_00273.pdb 108 RN 109 usage_00432.pdb 103 RN 104 usage_00433.pdb 100 RN 101 usage_00434.pdb 101 RN 102 usage_00435.pdb 104 RN 105 usage_00436.pdb 114 RN 115 usage_00582.pdb 97 RN 98 RN #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################