################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:35:10 2021 # Report_file: c_1370_103.html ################################################################################################ #==================================== # Aligned_structures: 44 # 1: usage_00017.pdb # 2: usage_00018.pdb # 3: usage_00103.pdb # 4: usage_00104.pdb # 5: usage_00106.pdb # 6: usage_00136.pdb # 7: usage_00319.pdb # 8: usage_00323.pdb # 9: usage_00324.pdb # 10: usage_00325.pdb # 11: usage_00341.pdb # 12: usage_00342.pdb # 13: usage_00343.pdb # 14: usage_00552.pdb # 15: usage_00555.pdb # 16: usage_00558.pdb # 17: usage_00559.pdb # 18: usage_00560.pdb # 19: usage_00561.pdb # 20: usage_00563.pdb # 21: usage_00564.pdb # 22: usage_00614.pdb # 23: usage_00674.pdb # 24: usage_00677.pdb # 25: usage_00678.pdb # 26: usage_00856.pdb # 27: usage_00980.pdb # 28: usage_01022.pdb # 29: usage_01024.pdb # 30: usage_01026.pdb # 31: usage_01031.pdb # 32: usage_01032.pdb # 33: usage_01267.pdb # 34: usage_01300.pdb # 35: usage_01342.pdb # 36: usage_01494.pdb # 37: usage_01538.pdb # 38: usage_01554.pdb # 39: usage_01603.pdb # 40: usage_01604.pdb # 41: usage_01605.pdb # 42: usage_01628.pdb # 43: usage_01678.pdb # 44: usage_01688.pdb # # Length: 74 # Identity: 14/ 74 ( 18.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 34/ 74 ( 45.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 38/ 74 ( 51.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00017.pdb 1 ----------------VRDQAEHLKTAVQMAVFIHNKKRKGG-GGYSAGERIVDIIATDI 43 usage_00018.pdb 1 ----SMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKG--GGYSAGERIVDIIATDI 54 usage_00103.pdb 1 -----MNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDIIATD- 54 usage_00104.pdb 1 GVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDIIATDI 60 usage_00106.pdb 1 GVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDIIATDI 60 usage_00136.pdb 1 -----MNHHLKNQIDRIREQANSVETIVLMAVHCMNHKRRGGIGDMTPAERLINMITT-- 53 usage_00319.pdb 1 ------NKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKG--GGYSAGERIVDIIATDI 52 usage_00323.pdb 1 -VVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIATDI 59 usage_00324.pdb 1 -----MNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIATDI 55 usage_00325.pdb 1 ---ESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIATDI 57 usage_00341.pdb 1 GVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIATDI 60 usage_00342.pdb 1 GVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIATDI 60 usage_00343.pdb 1 -VIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIATDI 59 usage_00552.pdb 1 ----SMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDII---- 52 usage_00555.pdb 1 -VIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDI----- 54 usage_00558.pdb 1 -----MNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDII---- 51 usage_00559.pdb 1 ----SMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDII---- 52 usage_00560.pdb 1 -----MNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDII---- 51 usage_00561.pdb 1 ----SMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRK---GGYSAGERIVDIIATDI 53 usage_00563.pdb 1 -------KELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDII---- 49 usage_00564.pdb 1 -----MNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDII---- 51 usage_00614.pdb 1 -------KELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIAT-- 51 usage_00674.pdb 1 ----SMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKG--GGYSAGERIVDIIATDI 54 usage_00677.pdb 1 ----SMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRK---GGYSAGERIVDIIATDI 53 usage_00678.pdb 1 ----SMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKG--GGYSAGERIVDIIATDI 54 usage_00856.pdb 1 -----MNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKG--GGYSAGERIVDIIATDI 53 usage_00980.pdb 1 ----SMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDII---- 52 usage_01022.pdb 1 ----SMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKG--GGYSAGERIVDIIATDI 54 usage_01024.pdb 1 ---ESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKG--GGYSAGERIVDIIATDI 55 usage_01026.pdb 1 --IESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDIIATD- 57 usage_01031.pdb 1 ------NKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRK---GGYSAGERIVDIIATDI 51 usage_01032.pdb 1 -----MNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDIIATDI 55 usage_01267.pdb 1 ----SMNKELKKIIGQVRDQAETLKTAVQMAVFIHNKKRKGG-GGYSAGERIVDIIATDI 55 usage_01300.pdb 1 ----SMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDIIA--- 53 usage_01342.pdb 1 ------NKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIATDI 54 usage_01494.pdb 1 GVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKG--GGYSAGERIVDIIATD- 57 usage_01538.pdb 1 -------KELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKG--GGYSAGERIVDIIATDI 51 usage_01554.pdb 1 --IESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDII---- 54 usage_01603.pdb 1 -VIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDII---- 55 usage_01604.pdb 1 GVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRK---GGYSAGERIVDIIATDI 57 usage_01605.pdb 1 -----MNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDII---- 51 usage_01628.pdb 1 ----SMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKG--GGYSAGERIVDIIATDI 54 usage_01678.pdb 1 -----MNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDII---- 51 usage_01688.pdb 1 -----MNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDII---- 51 vRdQAe lkTaVqMAVfihN KRk GgysagERivdi usage_00017.pdb 44 Q------------- 44 usage_00018.pdb 55 Q------------- 55 usage_00103.pdb -------------- usage_00104.pdb 61 Q------------- 61 usage_00106.pdb 61 Q------------- 61 usage_00136.pdb -------------- usage_00319.pdb 53 Q------------- 53 usage_00323.pdb 60 QTKELQKQITKIQN 73 usage_00324.pdb 56 Q------------- 56 usage_00325.pdb -------------- usage_00341.pdb 61 Q------------- 61 usage_00342.pdb 61 Q------------- 61 usage_00343.pdb -------------- usage_00552.pdb -------------- usage_00555.pdb -------------- usage_00558.pdb -------------- usage_00559.pdb -------------- usage_00560.pdb -------------- usage_00561.pdb 54 Q------------- 54 usage_00563.pdb -------------- usage_00564.pdb -------------- usage_00614.pdb -------------- usage_00674.pdb 55 Q------------- 55 usage_00677.pdb -------------- usage_00678.pdb 55 Q------------- 55 usage_00856.pdb 54 Q------------- 54 usage_00980.pdb -------------- usage_01022.pdb 55 Q------------- 55 usage_01024.pdb 56 Q------------- 56 usage_01026.pdb -------------- usage_01031.pdb -------------- usage_01032.pdb -------------- usage_01267.pdb 56 Q------------- 56 usage_01300.pdb -------------- usage_01342.pdb 55 Q------------- 55 usage_01494.pdb -------------- usage_01538.pdb 52 Q------------- 52 usage_01554.pdb -------------- usage_01603.pdb -------------- usage_01604.pdb 58 QT------------ 59 usage_01605.pdb -------------- usage_01628.pdb 55 Q------------- 55 usage_01678.pdb -------------- usage_01688.pdb -------------- #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################