################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:16:24 2021 # Report_file: c_0304_4.html ################################################################################################ #==================================== # Aligned_structures: 10 # 1: usage_00001.pdb # 2: usage_00002.pdb # 3: usage_00005.pdb # 4: usage_00006.pdb # 5: usage_00007.pdb # 6: usage_00027.pdb # 7: usage_00028.pdb # 8: usage_00029.pdb # 9: usage_00036.pdb # 10: usage_00060.pdb # # Length: 124 # Identity: 25/124 ( 20.2%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 66/124 ( 53.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 18/124 ( 14.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 -FFVTNHERMPFSKVKALCSELRGTVAIPRNAEENKAIQEVAK-T-SAFLGITDEVTEGQ 57 usage_00002.pdb 1 KCYYFSVEKEIFEDAKLFCEDKSSHLVFINTREEQQWIKKQMVGRESHWIGLTDSERENE 60 usage_00005.pdb 1 KFFVTNHERMPFSKVKALCSELRGTVAIPRNAEENKAIQEVAK-T-SAFLGITDEVTEGQ 58 usage_00006.pdb 1 -FFVTNHERMPFSKVKALCSELRGTVAIPRNAEENKAIQEVAK-T-SAFLGITDEVTEGQ 57 usage_00007.pdb 1 -FFVTNHERMPFSKVKALCSELRGTVAIPRNAEENKAIQEVAK-T-VAFLGITDEVTEGQ 57 usage_00027.pdb 1 -FFVTNHERMPFSKVKALCSELRGTVAIPRNAEENKAIQEVAK-T-SAFLGITDEVTEGQ 57 usage_00028.pdb 1 KFFVTNHERMPFSKVKALCSELRGTVAIPRNAEENKAIQEVAK-T-SAFLGITDEVTEGQ 58 usage_00029.pdb 1 -FFVTNHERMPFSKVKALCSELRGTVAIPRNAEENKAIQEVAK-T-SAFLGITDEVTEGQ 57 usage_00036.pdb 1 KFFLTNGEIMTFEKVKALCVKFQASVATPRNAAENGAIQNLIK-E-EAFLGITDEKTEGQ 58 usage_00060.pdb 1 -FFVTNHERMPFSKVKALCSELRGTVAIPRNAEENKAIQEVAK-T-SAFLGITDEVTEGQ 57 ff tn E m F kvKalC va prnaeEn aIq k aflGiTDe tEgq usage_00001.pdb 58 FMYVTGGRLTYSNWKKDQPD-----DWYGHGLGG-GEDCVTIVDNGLWNDISCQASHTAV 111 usage_00002.pdb 61 WKWLDGTSPDYKNWKAGQPDNWGHG-HG------PGEDCAGLIYAGQWNDFQCEDVNNFI 113 usage_00005.pdb 59 FMYVTGGRLTYSNWKKDQPD-----DWYGHGLGG-GEDCVHIVDNGLWNDISCQASHTAV 112 usage_00006.pdb 58 FMYVTGGRLTYSNWKKDQPD-----DWYGHGLGG-GEDCVHIVDNGLWNDISCQASHTAV 111 usage_00007.pdb 58 FMYVTGGRLTYSNWKKDQPD-----DWYGHGLGG-GEDCVHIVDNGLWNDISCQASHTAV 111 usage_00027.pdb 58 FMYVTGGRLTYSNWKKDQPD-----DWYGHGLGG-GEDCVHIVDNGLWNDDSCQRPYTAV 111 usage_00028.pdb 59 FMYVTGGRLTYSNWKKDQPD-----DWYGHGLGG-GEDCVHIVDNGLWNDDSCQRPYTAV 112 usage_00029.pdb 58 FMYVTGGRLTYSNWKKDQPD-----DWYGHGLGG-GEDCVHIVDNGLWNDDSCQRPYTAV 111 usage_00036.pdb 59 FVDLTGNRLTYTNWNEGEPN-----NAG------SDEDCVLLLKNGQWNDVPCSTSHLAV 107 usage_00060.pdb 58 FMYVTGGRLTYSNWKKDQPD-----DWYGHGLGG-GEDCVTIVDNGLWNDISCQASHTAV 111 f tG rltY NWk qPd gEDCv nG WND C av usage_00001.pdb 112 CEFP 115 usage_00002.pdb 114 CEKD 117 usage_00005.pdb 113 CEFP 116 usage_00006.pdb 112 CEFP 115 usage_00007.pdb 112 CEFP 115 usage_00027.pdb 112 CEFP 115 usage_00028.pdb 113 CEFP 116 usage_00029.pdb 112 CEFP 115 usage_00036.pdb 108 CE-- 109 usage_00060.pdb 112 CEFP 115 CE #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################