################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:43:46 2021 # Report_file: c_0138_9.html ################################################################################################ #==================================== # Aligned_structures: 12 # 1: usage_00014.pdb # 2: usage_00015.pdb # 3: usage_00016.pdb # 4: usage_00048.pdb # 5: usage_00049.pdb # 6: usage_00054.pdb # 7: usage_00055.pdb # 8: usage_00056.pdb # 9: usage_00057.pdb # 10: usage_00103.pdb # 11: usage_00108.pdb # 12: usage_00109.pdb # # Length: 230 # Identity: 33/230 ( 14.3%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 37/230 ( 16.1%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 78/230 ( 33.9%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00014.pdb 1 SWKGSEKIVRFAFELARAEGRKKVHCATKSNIMKLAEGTLKRAFEQVAQE-Y-------- 51 usage_00015.pdb 1 SWKGSEKIVRFAFELARAEGRKKVHCATKSNIMKLAEGTLKRAFEQVAQE-Y-------- 51 usage_00016.pdb 1 -KKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQGLFLDTVKEVAKD-F-------- 50 usage_00048.pdb 1 -KKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQGLFLDTVKEVAKD-F-------- 50 usage_00049.pdb 1 -KKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQGLFLDTVKEVAKD-F-------- 50 usage_00054.pdb 1 -RFATRRLMERALEWALRNGNTVVTIMHKGNIMKYTEGAFMRWAYEVALEKFREHVVTEQ 59 usage_00055.pdb 1 -KKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQGLFLDTVKEVAKD-F-------- 50 usage_00056.pdb 1 -KKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQGLFLDTVKEVAKD-F-------- 50 usage_00057.pdb 1 -KKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQGLFLDTVKEVAKD-F-------- 50 usage_00103.pdb 1 ------TEGAFMRWAYEVAL----------EKFREHVV-TEQEVQEKY------------ 31 usage_00108.pdb 1 -RFASERIAKVGLNFALR-RRKKVTCVHKANVMRITDGLFAEACRSVL---K-------- 47 usage_00109.pdb 1 TRFASERIAKVGLNFALR-RRKKVTCVHKANVMRITDGLFAEACRSVL---K-------- 48 a n g v usage_00014.pdb 52 -----------P-DIEAVHIIVDNAAHQLVKRPEQFEVIVTTNMNGDILSDLTSGLIGGL 99 usage_00015.pdb 52 -----------P-DIEAVHIIVDNAAHQLVKRPEQFEVIVTTNMNGDILSDLTSGLIGGL 99 usage_00016.pdb 51 -----------P-LVNVQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLVGGL 98 usage_00048.pdb 51 -----------P-LVNVQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLVGGL 98 usage_00049.pdb 51 -----------P-LVNVQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLVGGL 98 usage_00054.pdb 60 EVQEKYGGVRPEGKILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAASALVGGI 119 usage_00055.pdb 51 -----------P-LVNVQDIIVDNCATQLVMRPERYDVIVTTNLLGDILSDLAAGLMGGL 98 usage_00056.pdb 51 -----------P-LVNVQDIIVDNCATQLVMRPERYDVIVTTNLLGDILSDLAAGLMGGL 98 usage_00057.pdb 51 -----------P-LVNVQDIIVDNCATQLVMRPERYDVIVTTNLLGDILSDLAAGLMGGL 98 usage_00103.pdb 32 ------GGVRPEGKILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAASALVGGI 85 usage_00108.pdb 48 -----------G-KVEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAGSL 95 usage_00109.pdb 49 -----------G-KVEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAGSL 96 D P VIV N GD SD G usage_00014.pdb 100 GFAPSANIGNEVAIFEAVHGSAPKYAGKNVINPTAVLLSAVMMLR-YLE--------EFA 150 usage_00015.pdb 100 GFAPSANIGNEVAIFEAVHGSAPKYAGKNVINPTAVLLSAVMMLR-YLE--------EFA 150 usage_00016.pdb 99 GLAPSGNIGDTTAVFEPVHGSAPDIAGKGIANPTAAILSAAMMLD-YLG--------EKE 149 usage_00048.pdb 99 GLAPSGNIGDTTAVFEPVHGSAPDIAGKGIANPTAAILSAAMMLD-YLG--------EKE 149 usage_00049.pdb 99 GLAPSGNIGDTTAVFEPVHGSA--IAGKGIANPTAAILSAAMMLD-YLG--------EKE 147 usage_00054.pdb 120 GMAAGMNMGDGIAVAEPVHGTAPKYAGKDLINPSAEILSASLLIGEFM--------GWRE 171 usage_00055.pdb 99 GLAPSGNIGDTTAVFEPVHGSAPDIAGKGIANPTAAILSAAMMLD-YLG--------EKE 149 usage_00056.pdb 99 GLAPSGNIGDTTAVFEPVHGSAPDIAGKGIANPTAAILSAAMMLD-YLG--------EKE 149 usage_00057.pdb 99 GLAPSGNIGDTTAVFEPVHGSAPDIAGKGIANPTAAILSAAMMLD-YLG--------EKE 149 usage_00103.pdb 86 GMAAGMNMGDGIAVAEPVHGTAPKYAGKDLINPSAEILSASLLIGEFM--------GWRE 137 usage_00108.pdb 96 GIAPSANIGDKKALFEPVHGAAFDIAGKNIGNPTAFLLSVSMMYE-RMYELSNDDR-YIK 153 usage_00109.pdb 97 GIAPSANIGDKKALFEPVHGAAFDIAGKNIGNPTAFLLSVSMMYE-RMYELSNDDR-YIK 154 G A N G A E VHG A AGK NP A LS usage_00014.pdb 151 TADLIENALLYTLEEGRVLTGDVV-G-YD--RGAKTTEYTEAIIQNL--- 193 usage_00015.pdb 151 TADLIENALLYTLEEGRVLTGDVV-G-YD--RGAKTTEYTEAIIQNL--- 193 usage_00016.pdb 150 AAKRVEKAVDLVLERG-PRTPDLGG-------DATTEAFTEAVVEALKSL 191 usage_00048.pdb 150 AAKRVEKAVDLVLERG-PRTPDLGG-------DATTEAFTEAVVEALKSL 191 usage_00049.pdb 148 AAKRVEKAVDLVLERG-PRTPDLGG-------DATTEAFTEAVVEALKSL 189 usage_00054.pdb 172 VKSIVEYAIRKAVQSK-KVTQDLA-----------------RHM------ 197 usage_00055.pdb 150 AAKRVEKAVDLVLERG-PMTPDLGG-------DATTEAFTEAVVEALKSL 191 usage_00056.pdb 150 AAKRVEKAVDLVLERG-PMTPDLGG-------DATTEAFTEAVVEALKSL 191 usage_00057.pdb 150 AAKRVEKAVDLVLERG-PMTPDLGG-------DATTEAFTEAVVEALKSL 191 usage_00103.pdb 138 VKSIVEYAIRKAVQSK-KVTQDLA-RHMPGVQPLRTSEYTETLIAYIDEA 185 usage_00108.pdb 154 ASRALENAIYLVYKERKALTPDVGG-------NATTDDLINEIYNKL--- 193 usage_00109.pdb 155 ASRALENAIYLVYKERKALTPDVGG-------NATTDDLINEIYNKL--- 194 E A T D #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################