################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:16:29 2021 # Report_file: c_0679_32.html ################################################################################################ #==================================== # Aligned_structures: 5 # 1: usage_00142.pdb # 2: usage_00143.pdb # 3: usage_00310.pdb # 4: usage_00582.pdb # 5: usage_00644.pdb # # Length: 62 # Identity: 25/ 62 ( 40.3%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 33/ 62 ( 53.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 15/ 62 ( 24.2%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00142.pdb 1 ------------GTNVGSRFYLMN--GPDKYQMFNLMGNELAFDVDLSTVECGINSALYF 46 usage_00143.pdb 1 ALTLKFVTKHEYGTNVGSRFYLMN--GPDKYQMFNLMGNELAFDVDLSTVECGINSALYF 58 usage_00310.pdb 1 ------------STNIGSRVYLMSADD-TNYEIFKLKNQEFAFDVDMSNLPCGLNGALYF 47 usage_00582.pdb 1 ------------GTNVGSRFYLMN--GPDKYQMFNLMGNELAFDVDLSTVECGINSALYF 46 usage_00644.pdb 1 ------------STNVGSRTYLMD--GEDKYQTFELLGNEFTFDVDVSNIGCGLNGALYF 46 TNvGSR YLM g dkYq F L gnE aFDVD S CG N ALYF usage_00142.pdb 47 VA 48 usage_00143.pdb 59 VA 60 usage_00310.pdb 48 VE 49 usage_00582.pdb 47 VA 48 usage_00644.pdb 47 VS 48 V #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################