################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 07:49:56 2021 # Report_file: c_1117_52.html ################################################################################################ #==================================== # Aligned_structures: 55 # 1: usage_00088.pdb # 2: usage_00089.pdb # 3: usage_00217.pdb # 4: usage_00218.pdb # 5: usage_00219.pdb # 6: usage_00265.pdb # 7: usage_00266.pdb # 8: usage_00287.pdb # 9: usage_00292.pdb # 10: usage_00316.pdb # 11: usage_00387.pdb # 12: usage_00469.pdb # 13: usage_00500.pdb # 14: usage_00502.pdb # 15: usage_00567.pdb # 16: usage_00573.pdb # 17: usage_00666.pdb # 18: usage_00667.pdb # 19: usage_00686.pdb # 20: usage_00687.pdb # 21: usage_00728.pdb # 22: usage_00769.pdb # 23: usage_00813.pdb # 24: usage_00898.pdb # 25: usage_00912.pdb # 26: usage_00913.pdb # 27: usage_00914.pdb # 28: usage_00915.pdb # 29: usage_00916.pdb # 30: usage_00917.pdb # 31: usage_00949.pdb # 32: usage_00989.pdb # 33: usage_00990.pdb # 34: usage_00991.pdb # 35: usage_00992.pdb # 36: usage_00993.pdb # 37: usage_00994.pdb # 38: usage_00995.pdb # 39: usage_00996.pdb # 40: usage_00997.pdb # 41: usage_00998.pdb # 42: usage_00999.pdb # 43: usage_01000.pdb # 44: usage_01001.pdb # 45: usage_01002.pdb # 46: usage_01003.pdb # 47: usage_01004.pdb # 48: usage_01005.pdb # 49: usage_01006.pdb # 50: usage_01007.pdb # 51: usage_01008.pdb # 52: usage_01009.pdb # 53: usage_01010.pdb # 54: usage_01011.pdb # 55: usage_01012.pdb # # Length: 146 # Identity: 98/146 ( 67.1%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 99/146 ( 67.8%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 25/146 ( 17.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00088.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_00089.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_00217.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_00218.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_00219.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRQLAQQKRQGAERLLKM 60 usage_00265.pdb 1 STDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELAEEKREGYERLLKM 60 usage_00266.pdb 1 STDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELAEEKREGYERLLKM 60 usage_00287.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_00292.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_00316.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_00387.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALCGVAHFFRELAEEKREGAERLLKM 60 usage_00469.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_00500.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_00502.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGV-HFFRELAEEKREGAERLLKM 59 usage_00567.pdb 1 STDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELAEEKREGYERLLKM 60 usage_00573.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_00666.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_00667.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_00686.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALCGVCHFFHELAEEKREGAERLLKM 60 usage_00687.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALCGVCAFFHELAEEKREGAERLLKM 60 usage_00728.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCAFFRELAEEKREGAERLLKM 60 usage_00769.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_00813.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_00898.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRQLAQQKMQGAERLLKM 60 usage_00912.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_00913.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_00914.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_00915.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_00916.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_00917.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_00949.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_00989.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_00990.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_00991.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_00992.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_00993.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_00994.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_00995.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_00996.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_00997.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_00998.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_00999.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_01000.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_01001.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_01002.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_01003.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_01004.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_01005.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_01006.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_01007.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_01008.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_01009.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_01010.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_01011.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 usage_01012.pdb 1 STEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKM 60 ST VEAAVN LVNLYL ASYTYLSLGFYFDRDDVAL GV FF LA Kr G ERLLKM usage_00088.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00089.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00217.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTPDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00218.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTPDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00219.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTPDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00265.pdb 61 QNQRGGRALFQDIKKPAEDEWGKTPDAMKAAMALEKKLNQALLDLHALGSARTDPHLCDF 120 usage_00266.pdb 61 QNQRGGRALFQDIKKPAEDEWGKTPDAMKAAMALEKKLNQALLDLHALGSARTDPHLCDF 120 usage_00287.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTPDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00292.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00316.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00387.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00469.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTPDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00500.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00502.pdb 60 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 119 usage_00567.pdb 61 QNQRGGRALFQDIKKPAEDEWGKTPDAMKAAMALEKKLNQALLDLHALGSARTDPHLCDF 120 usage_00573.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00666.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00667.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00686.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00687.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00728.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTPDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00769.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00813.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00898.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTPDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00912.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00913.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00914.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00915.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00916.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00917.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00949.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00989.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00990.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00991.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00992.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00993.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00994.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00995.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00996.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00997.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00998.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_00999.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_01000.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_01001.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_01002.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_01003.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_01004.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_01005.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_01006.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_01007.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_01008.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_01009.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_01010.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_01011.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 usage_01012.pdb 61 QNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDF 120 QNQRGGRALFQD KP DEWG T DAMKAA LEK LNQALLDLHALGSA DPHLCDF usage_00088.pdb 121 LE------------------------ 122 usage_00089.pdb 121 LE------------------------ 122 usage_00217.pdb 121 LE------------------------ 122 usage_00218.pdb 121 LE------------------------ 122 usage_00219.pdb 121 LE------------------------ 122 usage_00265.pdb 121 LET----------------------- 123 usage_00266.pdb 121 LETHF--------------------- 125 usage_00287.pdb 121 LE------------------------ 122 usage_00292.pdb 121 LE------------------------ 122 usage_00316.pdb 121 LES----------------------- 123 usage_00387.pdb 121 LE------------------------ 122 usage_00469.pdb 121 LE------------------------ 122 usage_00500.pdb 121 LE------------------------ 122 usage_00502.pdb 120 LE------------------------ 121 usage_00567.pdb 121 LETHFLDEEVKLIKKMGDHLTNLHRL 146 usage_00573.pdb 121 LE------------------------ 122 usage_00666.pdb 121 LE------------------------ 122 usage_00667.pdb 121 LE------------------------ 122 usage_00686.pdb 121 LE------------------------ 122 usage_00687.pdb 121 LE------------------------ 122 usage_00728.pdb 121 LE------------------------ 122 usage_00769.pdb 121 LE------------------------ 122 usage_00813.pdb 121 LE------------------------ 122 usage_00898.pdb 121 LE------------------------ 122 usage_00912.pdb 121 LES----------------------- 123 usage_00913.pdb 121 LE------------------------ 122 usage_00914.pdb 121 LE------------------------ 122 usage_00915.pdb 121 LES----------------------- 123 usage_00916.pdb 121 LE------------------------ 122 usage_00917.pdb 121 LES----------------------- 123 usage_00949.pdb 121 LE------------------------ 122 usage_00989.pdb 121 LES----------------------- 123 usage_00990.pdb 121 LES----------------------- 123 usage_00991.pdb 121 LES----------------------- 123 usage_00992.pdb 121 LES----------------------- 123 usage_00993.pdb 121 LES----------------------- 123 usage_00994.pdb 121 LES----------------------- 123 usage_00995.pdb 121 LES----------------------- 123 usage_00996.pdb 121 LES----------------------- 123 usage_00997.pdb 121 LES----------------------- 123 usage_00998.pdb 121 LES----------------------- 123 usage_00999.pdb 121 LES----------------------- 123 usage_01000.pdb 121 LES----------------------- 123 usage_01001.pdb 121 LES----------------------- 123 usage_01002.pdb 121 LES----------------------- 123 usage_01003.pdb 121 LES----------------------- 123 usage_01004.pdb 121 LES----------------------- 123 usage_01005.pdb 121 LES----------------------- 123 usage_01006.pdb 121 LES----------------------- 123 usage_01007.pdb 121 LES----------------------- 123 usage_01008.pdb 121 LES----------------------- 123 usage_01009.pdb 121 LES----------------------- 123 usage_01010.pdb 121 LES----------------------- 123 usage_01011.pdb 121 LES----------------------- 123 usage_01012.pdb 121 LES----------------------- 123 LE #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################