################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:09:04 2021 # Report_file: c_0462_116.html ################################################################################################ #==================================== # Aligned_structures: 4 # 1: usage_00454.pdb # 2: usage_00485.pdb # 3: usage_00486.pdb # 4: usage_00833.pdb # # Length: 95 # Identity: 8/ 95 ( 8.4%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 40/ 95 ( 42.1%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 21/ 95 ( 22.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00454.pdb 1 --EKVGAVGGPQLPFVLATHKGIRAGLKAA-NP--R-ASYEETYTGRFYDLQKEQEAARG 54 usage_00485.pdb 1 -NAKIGVLQFVSHPSLDLIYKGIQDGLAEEGYKDDQ-VKIDF-NSEGDQS--KV-ATSKQ 54 usage_00486.pdb 1 -----GVLQFVSHPSLDLIYKGIQDGLAEEGY-----VKIDF-NSEGDQS--KV-ATSKQ 46 usage_00833.pdb 1 KTAKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPA--IAVQIARQ 58 gv q v hP ld kGi dGL y d g k q usage_00454.pdb 55 LLDKGAQLLVATDD--GRGLGQAAVAGDVPTIG-- 85 usage_00485.pdb 55 LVANGNDLVVGIATPAAQGLASATK--DLPVIAA- 86 usage_00486.pdb 47 LVANGNDLVVGIATPAAQGLASATK--DLPVIAA- 78 usage_00833.pdb 59 FVGENPDVLVGIATPTAQALVSATK--TIPIVFTA 91 lv g dl Vgiat aqgL sAtk d P i #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################