################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:31:52 2021 # Report_file: c_0280_2.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00001.pdb # 2: usage_00003.pdb # 3: usage_00004.pdb # 4: usage_00005.pdb # 5: usage_00006.pdb # 6: usage_00008.pdb # 7: usage_00009.pdb # 8: usage_00020.pdb # 9: usage_00025.pdb # 10: usage_00026.pdb # 11: usage_00029.pdb # # Length: 111 # Identity: 65/111 ( 58.6%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 75/111 ( 67.6%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 15/111 ( 13.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 VGLAAPQLDISKRIIAVLVPNI---------EAYDLEAIMYNPKIVSHSVQDAALGEGEG 51 usage_00003.pdb 1 VGLAAPQLDISKRIIAVLVPN-----------AYDLEAIMYNPKIVSHSVQDAALGEGEG 49 usage_00004.pdb 1 VGLAAPQLDISKRIIAVLVPNI---------EAYDLEAIMYNPKIVSHSVQDAALGEGEG 51 usage_00005.pdb 1 VGLAAPQLDISKRIIAVHVP--------------SLSTVMYNPKILSHSVQDVCLGEGEG 46 usage_00006.pdb 1 VGLAAPQIDVSKRIIAVLVPNLPDKEGNPPKEAYSWQEVLYNPKIVSHSVQDAALSDGEG 60 usage_00008.pdb 1 VGLAAPQLDISKRIIAVLVPNI----------AYDLEAIMYNPKIVSHSVQDAALGEGEG 50 usage_00009.pdb 1 VGLAAPQLDISKRIIAVLVPNI---------EAYDLEAIMYNPKIVSHSVQDAALGEGEG 51 usage_00020.pdb 1 VGLAAPQLDISKRIIAVLVPN------------YDLEAIMYNPKIVSHSVQDAALGEGEG 48 usage_00025.pdb 1 VGLAAPQLDISKRIIAVHVP--------------SLSTVMYNPKILSHSVQDVCLGEGEG 46 usage_00026.pdb 1 VGLAAPQLDISKRIIAVLVPNI----------AYDLEAIMYNPKIVSHSVQDAALGEGEG 50 usage_00029.pdb 1 VGLAAPQLDISKRIIAVLVPNI----------AYDLEAIMYNPKIVSHSVQDAALGEGEG 50 VGLAAPQlDiSKRIIAV VP l mYNPKI SHSVQD LgeGEG usage_00001.pdb 52 CLSVDRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHING 102 usage_00003.pdb 50 CLSVDRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHING 100 usage_00004.pdb 52 CLSVDRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHING 102 usage_00005.pdb 47 CLSVDRDVPGYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHING 97 usage_00006.pdb 61 CLSVDRVVEGYVVRHARVTVDYYDKEGQQHRIKLKGYNAIVVQHEIDHING 111 usage_00008.pdb 51 CLSVDRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHING 101 usage_00009.pdb 52 CLSVDRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHING 102 usage_00020.pdb 49 -LSVDRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHING 98 usage_00025.pdb 47 CLSVDRDVPGYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHING 97 usage_00026.pdb 51 -LSVDRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHING 100 usage_00029.pdb 51 CLSVDRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHING 101 LSVDR VpGYVVRH TV YfD GekH LK Y IVVQHEIDHING #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################