################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:10:22 2021 # Report_file: c_0872_4.html ################################################################################################ #==================================== # Aligned_structures: 14 # 1: usage_00001.pdb # 2: usage_00002.pdb # 3: usage_00003.pdb # 4: usage_00006.pdb # 5: usage_00020.pdb # 6: usage_00021.pdb # 7: usage_00022.pdb # 8: usage_00048.pdb # 9: usage_00049.pdb # 10: usage_00050.pdb # 11: usage_00051.pdb # 12: usage_00083.pdb # 13: usage_00084.pdb # 14: usage_00085.pdb # # Length: 153 # Identity: 32/153 ( 20.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 35/153 ( 22.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 43/153 ( 28.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 -TRVVAYGTTDELNSFVGSAITQLD-ENTFADIRGELFKIQHELFDCGGDLA-L------ 51 usage_00002.pdb 1 ----------DELNSFVGSAITQLD-ENTFADIRGELFKIQHELFDCGGDLALKVKE--- 46 usage_00003.pdb 1 -TRVVAYGTTDELNSFVGSAITQLD-ENTFADIRGELFKIQHELFDCGGDLALKVKE--- 55 usage_00006.pdb 1 --VVEVQGTIDELNSFIGYALVLS--R--WDDIRNDLFRIQNDLFVLGEDVSTGG-K--- 50 usage_00020.pdb 1 -LRVESYGTIDELNSFIGLALAELSGQPGFEDLTAELLTIQHELFDCGGDLAIV------ 53 usage_00021.pdb 1 SLRVESYGTIDELNSFIGLALAELSGQPGFEDLTAELLTIQHELFDCGGDLAIV---TER 57 usage_00022.pdb 1 SLRVESYGTIDELNSFIGLALAELSGQPGFEDLTAELLTIQHELFDCGGDLA-------- 52 usage_00048.pdb 1 -IRVEAYGTIDEANSHIGYAMTKLQ-GGAFIDIYNELENIQHELFDCGGDLAIV----EQ 54 usage_00049.pdb 1 DIRVEAYGTIDEANSHIGYAMTKLQ-GGAFIDIYNELENIQHELFDCGGDLAIV----EQ 55 usage_00050.pdb 1 -IRVEAYGTIDEANSHIGYAMTKLQ-GGAFIDIYNELENIQHELFDCGGDLAIV----EQ 54 usage_00051.pdb 1 --VVEVQGTIDELNSFIGYALVLS--R--WDDIRNDLFRIQNDLFVLGEDVSTGG-K--- 50 usage_00083.pdb 1 -IRVEAYGTIDEANSHIGYAMTKLQ-GGAFIDIYNELENIQHELFDCGGDLAIV----EQ 54 usage_00084.pdb 1 DIRVEAYGTIDEANSHIGYAMTKLQ-GGAFIDIYNELENIQHELFDCGGDLAIV----EQ 55 usage_00085.pdb 1 -IRVEAYGTIDEANSHIGYAMTKLQ-GGAFIDIYNELENIQHELFDCGGDLAIV----EQ 54 DE NS G A D L IQ LF G D usage_00001.pdb 52 --PYKAKQEIVDFLEQRIDAYIKEAPELERFILPGGSEAAASLHVCRTIARRAERYVVRL 109 usage_00002.pdb 47 DRPYKAKQEIVDFLEQRIDAYIKEAPELERFILPGGSEAAASLHVCRTIARRAERYVVRL 106 usage_00003.pdb 56 DRPYKAKQEIVDFLEQRIDAYIKEAPELERFILPGGSEAAASLHVCRTIARRAERYVVRL 115 usage_00006.pdb 51 --GRTVTREMIDYLEARVKEMKAEIGKIELFVVPGGSVESASLHMARAVSRRLERRIVAA 108 usage_00020.pdb 54 T-DYKLTEESVSFLETRIDAYTAEAPELKKFILPGGSKCASLLHIARTITRRAERRVVAL 112 usage_00021.pdb 58 K-DYKLTEESVSFLETRIDAYTAEAPELKKFILPGGSKCASLLHIARTITRRAERRVVAL 116 usage_00022.pdb 53 ---YKLTEESVSFLETRIDAYTAEAPELKKFILPGGSKCASLLHIARTITRRAERRVVAL 109 usage_00048.pdb 55 KIPYKVTIVMVESLERKIDLYIEEAPPLERFILPGGSEAAATIHIARTVVRRAERSIVSL 114 usage_00049.pdb 56 KIPYKVTIVMVESLERKIDLYIEEAPPLERFILPGGSEAAATIHIARTVVRRAERSIVSL 115 usage_00050.pdb 55 KIPYKVTIVMVESLERKIDLYIEEAPPLERFILPGGSEAAATIHIARTVVRRAERSIVSL 114 usage_00051.pdb 51 --GRTVTMDMIIYLIKRSVEMKAEIGKIELFVVPGGSVESASLHMARAVSRRLERRIKAA 108 usage_00083.pdb 55 KIPYKVTIVMVESLERKIDLYIEEAPPLERFILPGGSEAAATIHIARTVVRRAERSIVSL 114 usage_00084.pdb 56 KIPYKVTIVMVESLERKIDLYIEEAPPLERFILPGGSEAAATIHIARTVVRRAERSIVSL 115 usage_00085.pdb 55 KIPYKVTIVMVESLERKIDLYIEEAPPLERFILPGGSEAAATIHIARTVVRRAERSIVSL 114 Le E F PGGS H R RR ER v usage_00001.pdb 110 QQEGEINPIVLKYLNRLSDYFFAVARVVNSRLQ 142 usage_00002.pdb 107 QQEGEINPIVLKYLNRLSDYFFAVARVVNSRLQ 139 usage_00003.pdb 116 QQEGEINPIVLKYLNRLSDYFFAVARVVNSRLQ 148 usage_00006.pdb 109 SKLTEINKNVLIYANRLSSILFMHALISNKRLN 141 usage_00020.pdb 113 -KSEEIHETVLRYLNRLSDYFFAGARVVNARSG 144 usage_00021.pdb 117 -KSEEIHETVLRYLNRLSDYFFAGARVVNARSG 148 usage_00022.pdb 110 -KSEEIHETVLRYLNRLSDYFFAGARVVNARSG 141 usage_00048.pdb 115 QKEVKINEVVLKYVNRLSDYLFAIARVINARLQ 147 usage_00049.pdb 116 QKEVKINEVVLKYVNRLSDYLFAIARVINARLQ 148 usage_00050.pdb 115 QKEVKINEVVLKYVNRLSDYLFAIARVINARLQ 147 usage_00051.pdb 109 SELTEINANVLLYANMLSNILFMHALISNKRLN 141 usage_00083.pdb 115 QKEVKINEVVLKYVNR----------------- 130 usage_00084.pdb 116 QKEVKINEVVLKYVNRLSDYLFAIARVINARLQ 148 usage_00085.pdb 115 QKEVKINEVVLKYVNR----------------- 130 I VL Y Nr #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################