################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:05:34 2021 # Report_file: c_0466_11.html ################################################################################################ #==================================== # Aligned_structures: 4 # 1: usage_00065.pdb # 2: usage_00066.pdb # 3: usage_00081.pdb # 4: usage_00100.pdb # # Length: 80 # Identity: 13/ 80 ( 16.2%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 33/ 80 ( 41.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 10/ 80 ( 12.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00065.pdb 1 RVRTLRVFE-DNALV--RKVLEEEGAGQVLFVDGGGSLRTALLGGNLARRAWEKGWAGVV 57 usage_00066.pdb 1 --RTLRVFE-DNALV--RKVLEEEGAGQVLFVDGGGSLRTALLGGNLARRAWEKGWAGVV 55 usage_00081.pdb 1 --FTVQYQPVD----ASANYIDQVPSGSVIVSSNSGRHDCTVWGDI-THFALANGIKGTV 53 usage_00100.pdb 1 --VTIKCFE-DNSLV--KEQVDKDGKGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGIV 55 T fe D g G Vl vdggGslr allG a A Gw G V usage_00065.pdb 58 VHGAVRDTEELREVPIGLLA 77 usage_00066.pdb 56 VHGAVRDTEELREVPIGLLA 75 usage_00081.pdb 54 IDGVARDIDTVINCNYPLFS 73 usage_00100.pdb 56 VYGCIRDVDVIAQTDLGVQA 75 v G RD gl a #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################