################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:10:17 2021 # Report_file: c_1490_158.html ################################################################################################ #==================================== # Aligned_structures: 10 # 1: usage_00312.pdb # 2: usage_00435.pdb # 3: usage_00814.pdb # 4: usage_00842.pdb # 5: usage_00850.pdb # 6: usage_01019.pdb # 7: usage_01036.pdb # 8: usage_01259.pdb # 9: usage_01261.pdb # 10: usage_01339.pdb # # Length: 41 # Identity: 3/ 41 ( 7.3%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 11/ 41 ( 26.8%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 12/ 41 ( 29.3%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00312.pdb 1 NQTVDIWSVGCIMAEMLTGKTL-FKGKDYLDQLTQI----- 35 usage_00435.pdb 1 TKSIDIWSVGCILAEMLSNRPI-FPGKHYLDQLNHILGIL- 39 usage_00814.pdb 1 --SIDIWSVGCILAEMLSNRPI-FPGKHYLDQLNHILGILG 38 usage_00842.pdb 1 DYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKV-- 39 usage_00850.pdb 1 TKSIDIWSVGCILAEMLSNRPI-FPGKHYLDQLNHILGILG 40 usage_01019.pdb 1 NQTVDIWSVGCIMAEMLTGKTL-FKGKDYLDQLTQILKVTG 40 usage_01036.pdb 1 -QTVDIWSVGCIMAELLTGRTL-FPGTDHIDQLKLI----- 34 usage_01259.pdb 1 DYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKV-- 39 usage_01261.pdb 1 NQTVDIWSVGCIMAEMLTGKTL-FKGKDYLDQLTQILKVTG 40 usage_01339.pdb 1 -TKGDVYSYGVVLLELLTGKRP-T----NLVGWVKQHA--- 32 D wS Gc a f dql i #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################