################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:23:14 2021 # Report_file: c_0048_12.html ################################################################################################ #==================================== # Aligned_structures: 15 # 1: usage_00002.pdb # 2: usage_00003.pdb # 3: usage_00012.pdb # 4: usage_00031.pdb # 5: usage_00032.pdb # 6: usage_00033.pdb # 7: usage_00034.pdb # 8: usage_00035.pdb # 9: usage_00036.pdb # 10: usage_00050.pdb # 11: usage_00063.pdb # 12: usage_00130.pdb # 13: usage_00157.pdb # 14: usage_00158.pdb # 15: usage_00171.pdb # # Length: 254 # Identity: 26/254 ( 10.2%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 48/254 ( 18.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 80/254 ( 31.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00002.pdb 1 --ALVTGATGGLGEAIARALHAQGAIVGLHGTRE-EKLKELAAEL---G--E-RIFVFPA 51 usage_00003.pdb 1 -KALVTGATGGLGEAIARALHAQGAIVGLHGTRE-EKLKELAAEL---G--E-RIFVFPA 52 usage_00012.pdb 1 KSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEI---KAKGVDSFAIQA 57 usage_00031.pdb 1 -VALVTGASRGIGKAIAELLAERGAKVIGTATSE-SGAQAISDYL---G--D-NGKGMAL 52 usage_00032.pdb 1 -VALVTGASRGIGKAIAELLAERGAKVIGTATSE-SGAQAISDYL---G--D-NGKGMAL 52 usage_00033.pdb 1 -VALVTGASRGIGKAIAELLAERGAKVIGTATSE-SGAQAISDYL---G--D-NGKGMAL 52 usage_00034.pdb 1 -VALVTGASRGIGKAIAELLAERGAKVIGTATSE-SGAQAISDYL---G--D-NGKGMAL 52 usage_00035.pdb 1 -VALVTGASRGIGKAIAELLAERGAKVIGTATSE-SGAQAISDYL---G--D-NGKGMAL 52 usage_00036.pdb 1 -VALVTGASRGIGKAIAELLAERGAKVIGTATSE-SGAQAISDYL---G--D-NGKGMAL 52 usage_00050.pdb 1 RHALITAGTKGLGKQVTEKLLAKGYSVTVTYHT--TAMETMKETYKDVE--E-RLQFVQA 55 usage_00063.pdb 1 KIALVTGASRGIGRAIAETLAARGAKVIGTATSE-NGAQAISDYL---G--A-NGKGLML 53 usage_00130.pdb 1 -VALVTGASRGIGKAIAELLAERGAKVIGTATSE-SGAQAISDYL---G--D-NGKG-AL 51 usage_00157.pdb 1 -VALVTGASRGIGKAIAELLAERGAKVIGTATSE-SGAQAISDYL---G--D-NGKGMAL 52 usage_00158.pdb 1 -VALVTGASRGIGKAIAELLAERGAKVIGTATSE-SGAQAISDYL---G--D-NGKGMAL 52 usage_00171.pdb 1 KVCAVFGGSRGIGRAVAQLMARKGYRLAVIARNL-EGAKAAAGDL---G--G-DHLAFSC 53 alvtg G G a l G v usage_00002.pdb 52 NLSDREAVKALGQKAEEEMGGVDILVNNAGITR--DGLFVRMSDEDWD------AVLTVN 103 usage_00003.pdb 53 NLSDREAVKALGQKAEEEMGGVDILVNNAGITR--DGLFVRMSDEDWD------AVLTVN 104 usage_00012.pdb 58 NVADADEVKAMIKEVVSQFGSLDVLVNNAGITR--DNLLMRMKEQEWD------DVIDTN 109 usage_00031.pdb 53 NVTNPESIEAVLKAITDEFGGVDILVNNAGITR------MRMKEEEWS------DIMETN 100 usage_00032.pdb 53 NVTNPESIEAVLKAITDEFGGVDILVNNAGITR--DNLLMRMKEEEWS------DIMETN 104 usage_00033.pdb 53 NVTNPESIEAVLKAITDEFGGVDILVNNAGITR--DNLLMRMKEEEWS------DIMETN 104 usage_00034.pdb 53 NVTNPESIEAVLKAITDEFGGVDILVNNAGITR--DNLLMRMKEEEWS------DIMETN 104 usage_00035.pdb 53 NVTNPESIEAVLKAITDEFGGVDILVNNAGITR--DNLLMRMKEEEWS------DIMETN 104 usage_00036.pdb 53 NVTNPESIEAVLKAITDEFGGVDILVNNADITR--DNLLMRMKEEEWS------DIMETN 104 usage_00050.pdb 56 DVTKKEDLHKIVEEAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWN------EMIQGN 109 usage_00063.pdb 54 NVTDPASIESVLEKIRAEFGEVDILVNNA------DNLLMRMKDEEWN------DIIETN 101 usage_00130.pdb 52 NVTNPESIEAVLKAITDEFGGVDILVNNAGITR--DNLLR--------KEEEWSD-IETN 100 usage_00157.pdb 53 NVTNPESIEAVLKAITDEFGGVDILVNNAGITR-------RMKEEEWS------DIMETN 99 usage_00158.pdb 53 NVTNPESIEAVLKAITDEFGGVDILVNNAGITR---L-LMRMKEEEWS------DIMETN 102 usage_00171.pdb 54 DVAKEHDVQNTFEELEKHLGRVNFLVNAAGINR--DGLLVRTKTEDMV------SQLHTN 105 G d LvNnA N usage_00002.pdb 104 LTSVFNLTRELTHPMMRRRNGRIINITSIVG--VTGNPGQANYCASKAGLIGFSKSLAQE 161 usage_00003.pdb 105 LTSVFNLTRELTHPMMRRRNGRIINITSIVG--VTGNPGQANYCASKAGLIGFSKSLAQE 162 usage_00012.pdb 110 LKGVFNCIQKATPQMLRQRSGAIINLSSVVG--AVGNPGQANYVATKAGVIGLTKSAARE 167 usage_00031.pdb 101 LTSIFRLSKAVLRGMMKKRQGRIINVGSVVA--------------AKAGVIGFTKSMARE 146 usage_00032.pdb 105 LTSIFRLSKAVLRGMMKKRQGRIINVGSVVG--TMGNAGQANYAAAKAGVIGFTKSMARE 162 usage_00033.pdb 105 LTSIFRLSKAVLRGMMKKRQGRIINVGSVVG--TMGNAGQANYAAAKAGVIGFTKSMARE 162 usage_00034.pdb 105 LTSIFRLSKAVLRGMMKKRQGRIINVGSVVG--TMGNAGQANYAAAKAGVIGFTKSMARE 162 usage_00035.pdb 105 LTSIFRLSKAVLRGMMKKRQGRIINVGSVVG--TMGNAGQANYAAAKAGVIGFTKSMARE 162 usage_00036.pdb 105 LTSIFRLSKAVLRGMMKKRQGRIINVGSVVG--TMGNAGQANYAAAKAGVIGFTKSMARE 162 usage_00050.pdb 110 LTAVFHLLKLVVPVMRKQNFGRIINYGFQGADSAPGWIYRSAFAAAKVGLVSLTKTVAYE 169 usage_00063.pdb 102 LSSVFRLSKAVMRAMMKKRHGRIITIG------------A-NYAAAKAGLIGFSKSLARE 148 usage_00130.pdb 101 LTSIFRLSKAVLRG--KKRQGRIINVGSVVG--T-GNAGQANYAAAKAGVIGFTKS-ARE 154 usage_00157.pdb 100 LTSIFRLSKAVLRGMMKKRQGRIINVAS--A--------------AKAGVIGFTKSMARE 143 usage_00158.pdb 103 LTSIFRLSKAVLRGMMKKRQGRIINVAS--V--------------AKAGVIGFTKSMARE 146 usage_00171.pdb 106 LLGSMLTCKAAMRTMIQQQGGSIVNVGSIVG--LKGNSGQSVYSASKGGLVGFSRALAKE 163 L f G Iin K G g k A E usage_00002.pdb 162 IASRNVTVNCIAPGF----------EKQKDAIMGN----IPMKRMGVGADIAAAVVYLAS 207 usage_00003.pdb 163 IASRNVTVNCIAPGFIEK-----------DAIMGN----IPMKRMGVGADIAAAVVYLAS 207 usage_00012.pdb 168 LASRGITVNAVAPGFIVSDT-DALSDELKEQMLTQ----IPLARFGQDTDIANTVAFLAS 222 usage_00031.pdb 147 VASRGVTVNTVAPGFIETDM-----DEQRTATLAQ----VPAGRLGDPREIASAVAFLAS 197 usage_00032.pdb 163 VASRGVTVNTVAPGAIETDMTKALNDEQRTATLAQ----VPAGRLGDPREIASAVAFLAS 218 usage_00033.pdb 163 VASRGVTVNTVAPGAIETDMTKALNDEQRTATLAQ----VPAGRLGDPREIASAVAFLAS 218 usage_00034.pdb 163 VASRGVTVNTVAPGAIETDMTKALNDEQRTATLAQ----VPAGRLGDPREIASAVAFLAS 218 usage_00035.pdb 163 VASRGVTVNTVAPGAIETDMTKALNDEQRTATLAQ----VPAGRLGDPREIASAVAFLAS 218 usage_00036.pdb 163 VASRGVTVNTVAPGFIETDMTKALNDEQRTATLAQ----VPAGRLGDPREIASAVAFLAS 218 usage_00050.pdb 170 EAEYGITANMVCPGDIIG-----------EMKEATIQEARQL-RSGTGEDIARTISFLCE 217 usage_00063.pdb 149 VASRGITVNVVAPGFIETDMTRAL---QRAGILAQ----VPAGRLGGAQEIANAVAFLAS 201 usage_00130.pdb 155 VASRGVTVNTVAPGFIETDT-KALNDEQRTATLAQ----VPAGRLGDPREIASAVAFLAS 209 usage_00157.pdb 144 VASRGVTVNTVAPGFIETDM-----DEQRTATLAQ----VPAGRLGDPREIASAVAFLAS 194 usage_00158.pdb 147 VASRGVTVNTVAPGFIETDM------EQRTATLAQ----VPAGRLGDPREIASAVAFLAS 196 usage_00171.pdb 164 VARKKIRVNVVAPGFVHT-----------EHLKKN----IPLGRFGETIEVAHAVVFLLE 208 A tvN aPG p R G iA v L usage_00002.pdb 208 DEAAYVTGQTLHVN 221 usage_00003.pdb 208 DEAAYVTGQTLHVN 221 usage_00012.pdb 223 DKAKYITGQTIHVN 236 usage_00031.pdb 198 PEAAYITGETLHV- 210 usage_00032.pdb 219 PEAAYITGETLHVN 232 usage_00033.pdb 219 PEAAYITGETLHVN 232 usage_00034.pdb 219 PEAAYITGETLHVN 232 usage_00035.pdb 219 PEAAYITGETLHVN 232 usage_00036.pdb 219 PEAAYITGETLHVN 232 usage_00050.pdb 218 DDSDMITGTIIEVT 231 usage_00063.pdb 202 DEAAYITGETLHVN 215 usage_00130.pdb 210 PEAAYITGETLHVN 223 usage_00157.pdb 195 PEAAYITGETLHVN 208 usage_00158.pdb 197 PEAAYITGETLHVN 210 usage_00171.pdb 209 SPYI--TGHVLVVD 220 TG V #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################