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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Wed Jan 20 23:49:58 2021
# Report_file: c_1105_5.html
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#====================================
# Aligned_structures: 8
#   1: usage_00120.pdb
#   2: usage_00123.pdb
#   3: usage_00485.pdb
#   4: usage_00487.pdb
#   5: usage_00546.pdb
#   6: usage_00706.pdb
#   7: usage_00767.pdb
#   8: usage_00975.pdb
#
# Length:        141
# Identity:      107/141 ( 75.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    108/141 ( 76.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           33/141 ( 23.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00120.pdb         1  ---LIDRAIDNLSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGL   57
usage_00123.pdb         1  -SQLIDRAIDNLSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGL   59
usage_00485.pdb         1  -SQLIDRAIDNLSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGL   59
usage_00487.pdb         1  -SQLIDRAIDNLSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGL   59
usage_00546.pdb         1  --QLIDRAIDNLSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGL   58
usage_00706.pdb         1  RSQLIDRAIDNLSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGL   60
usage_00767.pdb         1  -SQLIDRAIDNLSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGL   59
usage_00975.pdb         1  -SQLIDRAIDNLSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGL   59
                              LIDRAIDNLSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGL

usage_00120.pdb        58  NANIMSLGGIAIAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEV  117
usage_00123.pdb        60  NANIMSLGGIAIAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEV  119
usage_00485.pdb        60  NANIMSLGGIAIAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEV  119
usage_00487.pdb        60  NANIMSLGGIAIAVGAMVDAAIVMIENAHKRLEEWQHQ--------KTRWQVITDASVEV  111
usage_00546.pdb        59  NANIMSLGGIAIAVGAMVDAAIVMIENAHKRLEEWQHQ--------KTRWQVITDASVE-  109
usage_00706.pdb        61  NANIMSLGGIAIAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEV  120
usage_00767.pdb        60  NANIMSLGGIAIAVGAMVAAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEV  119
usage_00975.pdb        60  NANIMSLGGIAIAVGAMVDAAIVMIENAHKRLEEWQHQ--------KTRWQVITDASVEV  111
                           NANIMSLGGIAIAVGAMVdAAIVMIENAHKRLEEWQHQ        KTRWQVITDASVE 

usage_00120.pdb       118  GPALFISLLIITLSFIPIFTL  138
usage_00123.pdb            ---------------------     
usage_00485.pdb       120  GPALFISLLIITLSFIPIFTL  140
usage_00487.pdb       112  GPALFISLLIITLS-------  125
usage_00546.pdb            ---------------------     
usage_00706.pdb            ---------------------     
usage_00767.pdb            ---------------------     
usage_00975.pdb       112  GPALFISLLIITL--------  124
                                                


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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