################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:46:05 2021 # Report_file: c_0057_4.html ################################################################################################ #==================================== # Aligned_structures: 8 # 1: usage_00001.pdb # 2: usage_00002.pdb # 3: usage_00008.pdb # 4: usage_00019.pdb # 5: usage_00021.pdb # 6: usage_00022.pdb # 7: usage_00030.pdb # 8: usage_00031.pdb # # Length: 180 # Identity: 23/180 ( 12.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 42/180 ( 23.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 30/180 ( 16.7%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 EDHHK-II----DGDIGKSIGDKLTNNPKSRLVFLGW-DSGTRNLITKNP-VEKPEDLHG 53 usage_00002.pdb 1 HDHRK-II----DGEIGQEILDKITNSD-FNLVALAW-DGGSRSIYTKKP-VRSLEDLKG 52 usage_00008.pdb 1 --SSE-AYHHVDDPEIVKPIFESTREG---GFEGVTWLDAGSRSFYTKDKPVNSPEDLSG 54 usage_00019.pdb 1 VPHFR-VL----DGEAGKIIAAG-AEK---GIQPLAWYDAGARSFYNGEKPINTPADVEG 51 usage_00021.pdb 1 -----PDDYRI-DGEIGERFADALAEK---NLIVLSWFGSGARSLYNTDHPVETPDDVEG 51 usage_00022.pdb 1 -----PDDYRI-DGEIGERFADALAEK---NLIVLSWFGSGARSLYNTDHPVETPDDVEG 51 usage_00030.pdb 1 --SEE-HLHNV-DGPIGDELAKAFEAK---DLIAVAYYDGGSRSFYNSQKPITKVEDLKG 53 usage_00031.pdb 1 --SEE-HLHNV-DGPIGDELAKAFEAK---DLIAVAYYDGGSRSFYNSQKPITKVEDLKG 53 Dg ig G Rs y D G usage_00001.pdb 54 -KIRVQGSPVALDTLKD-GANSVAGVSEVFSG-QTGVIDGAENNPPTFVAHNY-PVAKNY 109 usage_00002.pdb 53 -KIRVQGNPLFID--NA-GGNGIADTGEIFSALQTGVIDGAENNPPTLLEHNHFQSAKYY 108 usage_00008.pdb 55 LKIRVQQSPTNVR--DLLGSSASPGFGEVYTALQSGIIDGAENNE-SLTDNGHGEVCKYY 111 usage_00019.pdb 52 -KVRV-NNELFTG-IAELGGNPSPAFAEVYQALKTGVVDGAENNWPSYESTGHFEVAGFY 108 usage_00021.pdb 52 LKVRV-NNDLYVQ--IDEGGNATPAYGEVYQSLKTGVIDGAENNYPSYESSGHYEVANYY 108 usage_00022.pdb 52 LKVRV-NNDLYVQ--IDEGGNATPAYGEVYQSLKTGVIDGAENNYPSYESSGHYEVANYY 108 usage_00030.pdb 54 -KFRV-QSDVFVD--SALGANATPPYGEVYSSIQTGVIDGAENNWPSYDSSGHFEVAKYY 109 usage_00031.pdb 54 -KFRV-QSDVFVD--SALGANATPPYGEVYSSIQTGVIDGAENNWPSYDSSGHFEVAKYY 109 K RV G n Ev tGviDGAENN h va Y usage_00001.pdb 110 TLSGHFITPE-LLYSKVKWDKLTADEQQKILTLAREAQFEQRKLWDAYNQEALAKKAGG- 167 usage_00002.pdb 109 TLTGHLILPE-PVVSKTTWNKLTPEQQVLVKKVAREAQ-EERALWDAKSAASEEKLKAAG 166 usage_00008.pdb 112 SYD-HQ-VPDIVIANYSWLEGLPEEDRKVFDEGFKVLNEVQRKEWKVAVDKAKEKASEG- 168 usage_00019.pdb 109 SLSQHLIIPECICINIGTFNALSDE-KTAVLEAAQESALYQRDLWNKREAASRAAVEAAG 167 usage_00021.pdb 109 SLTEHLILPECLCVAKASWEELSEKDRQAIREAAEDAAKEQRALWEEGVQASKQKILDAG 168 usage_00022.pdb 109 SLTEHLILPECLCVAKASWEELSEKDRQAIREAAEDAAKEQRALWEEGVQASKQKILDAG 168 usage_00030.pdb 110 TLDQHL-VPELVAISKIKWDALSPEDQQVLRQAAEESEPVQRKLWAEQEKASEEKVVASG 168 usage_00031.pdb 110 TLDQHL-VPELVAISKIKWDALSPEDQQVLRQAAEESEPVQRKLWAEQEKASEEKVVASG 168 l H Pe L a qR lW k #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################