################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 04:59:31 2021 # Report_file: c_0143_6.html ################################################################################################ #==================================== # Aligned_structures: 37 # 1: usage_00034.pdb # 2: usage_00035.pdb # 3: usage_00036.pdb # 4: usage_00037.pdb # 5: usage_00038.pdb # 6: usage_00043.pdb # 7: usage_00044.pdb # 8: usage_00045.pdb # 9: usage_00046.pdb # 10: usage_00047.pdb # 11: usage_00048.pdb # 12: usage_00049.pdb # 13: usage_00050.pdb # 14: usage_00064.pdb # 15: usage_00117.pdb # 16: usage_00118.pdb # 17: usage_00150.pdb # 18: usage_00174.pdb # 19: usage_00206.pdb # 20: usage_00207.pdb # 21: usage_00208.pdb # 22: usage_00209.pdb # 23: usage_00231.pdb # 24: usage_00247.pdb # 25: usage_00253.pdb # 26: usage_00268.pdb # 27: usage_00289.pdb # 28: usage_00297.pdb # 29: usage_00301.pdb # 30: usage_00318.pdb # 31: usage_00332.pdb # 32: usage_00333.pdb # 33: usage_00335.pdb # 34: usage_00336.pdb # 35: usage_00351.pdb # 36: usage_00353.pdb # 37: usage_00365.pdb # # Length: 114 # Identity: 39/114 ( 34.2%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 63/114 ( 55.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 16/114 ( 14.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00034.pdb 1 EIVLTQSPGTQSLSPGERATLSCRASQSVG---NNKLAWYQQRPGQAPRLLIYGASSRPS 57 usage_00035.pdb 1 EIVLTQSPGTQSLSPGERATLSCRASQSVG---NNKLAWYQQRPGQAPRLLIYGASSRPS 57 usage_00036.pdb 1 EIVLTQSPGTQSLSPGERATLSCRASQSVG---NNKLAWYQQRPGQAPRLLIYGASSRPS 57 usage_00037.pdb 1 EIVLTQSPGTQSLSPGERATLSCRASQSVG---NNKLAWYQQRPGQAPRLLIYGASSRPS 57 usage_00038.pdb 1 EIVLTQSPGTQSLSPGERATLSCRASQSVG---NNKLAWYQQRPGQAPRLLIYGASSRPS 57 usage_00043.pdb 1 EIVLTQSPGTQSLSPGERATLSCRASQSVG---NNKLAWYQQRPGQAPRLLIYGASSRPS 57 usage_00044.pdb 1 EIVLTQSPGTQSLSPGERATLSCRASQSVG---NNKLAWYQQRPGQAPRLLIYGASSRPS 57 usage_00045.pdb 1 EIVLTQSPGTQSLSPGERATLSCRASQSVG---NNKLAWYQQRPGQAPRLLIYGASSRPS 57 usage_00046.pdb 1 EIVLTQSPGTQSLSPGERATLSCRASQSVG---NNKLAWYQQRPGQAPRLLIYGASSRPS 57 usage_00047.pdb 1 EIVLTQSPGTQSLSPGERATLSCRASQSVG---NNKLAWYQQRPGQAPRLLIYGASSRPS 57 usage_00048.pdb 1 EIVLTQSPGTQSLSPGERATLSCRASQSVG---NNKLAWYQQRPGQAPRLLIYGASSRPS 57 usage_00049.pdb 1 EIVLTQSPGTQSLSPGERATLSCRASQSVG---NNKLAWYQQRPGQAPRLLIYGASSRPS 57 usage_00050.pdb 1 EIVLTQSPGTQSLSPGERATLSCRASQSVG---NNKLAWYQQRPGQAPRLLIYGASSRPS 57 usage_00064.pdb 1 YIGLTQSPGTLSVSPGERATLSCRPSQAIS---KSHLAWYSQKSGQPPRLLLTGTYERAS 57 usage_00117.pdb 1 EIVLTQSPGTQSLSPGERATLSCRASQSVG---NNKLAWYQQRPGQAPRLLIYGASSRPS 57 usage_00118.pdb 1 -IVLTQSPGTQSLSPGERATLSCRASQSVG---NNKLAWYQQRPGQAPRLLIYGASSRPS 56 usage_00150.pdb 1 DIVMTQSPATLSVSPGERATLSCRASESV----SSDLAWYQQKPGQAPRLLIYGASTRAT 56 usage_00174.pdb 1 -IVLTQSPGTQSLSPGERATLSCRASQSVG---NNKLAWYQQRPGQAPRLLIYGASSRPS 56 usage_00206.pdb 1 EIVLTQSPGTQSLSPGERATLSCRASQSVG---NNKLAWYQQRPGQAPRLLIYGASSRPS 57 usage_00207.pdb 1 -IVLTQSPGTQSLSPGERATLSCRASQSVG---NNKLAWYQQRPGQAPRLLIYGASSRPS 56 usage_00208.pdb 1 EIVLTQSPGTLSLSPGERATLSCRASQSVS---SSYLAWYQQKPGQAPRLLIYGASSRAT 57 usage_00209.pdb 1 EIVLTQSPGTLSLSPGERATLSCRASQSVS---SSYLAWYQQKPGQAPRLLIYGASSRAT 57 usage_00231.pdb 1 EIVLTQTPATLSLTPGERATLTCRASQSVS---SSYLAWYQQKPGQAPRLLIYGASSRAT 57 usage_00247.pdb 1 --VMTQSPATLSVSPGERATLSCRASESV----SSDLAWYQQKPGQAPRLLIYGASTRAT 54 usage_00253.pdb 1 -IVLTQSPGTQSLSPGERATLSCRASQSVG---NNKLAWYQQRPGQAPRLLIYGASSRPS 56 usage_00268.pdb 1 --VLTQSPGTLSLSPGERATLSCRASQSVS---SSFFAWYQQKPGQAPRLLIYGASSRAT 55 usage_00289.pdb 1 DIVMTQSPATLSVSPGERATLSCRASESV----SSDLAWYQQKPGQAPRLLIYGASTRAT 56 usage_00297.pdb 1 -IVLTQSPATLSLSPGERATLSCRASQSVS---SNYLAWYQQKPGQAPRLLIYDSSSRAT 56 usage_00301.pdb 1 -IVLTQSPGTLSLSPGERATLSCRASQSVS---SSYLAWYQQKPGQAPRLLIYGASSRAT 56 usage_00318.pdb 1 EIVLTQSPGTLSLSPGERATLSCRASQSVS---SSYLAWYQQKPGQAPRLLIYGASSRAT 57 usage_00332.pdb 1 -TVLTQSPGTLSLSPGERATLSCRASQSLG---SSYLAWYQQKPGQAPRLLIYGASSRAP 56 usage_00333.pdb 1 -TVLTQSPGTLSLSPGERATLSCRASQSLG---SSYLAWYQQKPGQAPRLLIYGASSRAP 56 usage_00335.pdb 1 EIVLTQSPGTQSLSPGERATLSCRASQSVG---NNKLAWYQQRPGQAPRLLIYGASSRPS 57 usage_00336.pdb 1 EIVLTQSPGTQSLSPGERATLSCRASQSVG---NNKLAWYQQRPGQAPRLLIYGASSRPS 57 usage_00351.pdb 1 --VLTQSPGTLSLSPGERATLSCKASQSVDYDGDSYMNWYQQKPGQAPRLLIYAASNLES 58 usage_00353.pdb 1 -IVLTQSPATLSLSPGERATLSCRASQSV----SSYLAWYQQKPGQAPRLLIYDASNRAT 55 usage_00365.pdb 1 -IVLTQSPLTLSVSPGERATLSCRASQSV----SSNLAWYQQMPGQAPRLLIYGASTRAT 55 v TQsP T S sPGERATLsCraS s aWYqQ pGQaPRLLiy s r usage_00034.pdb 58 GVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGQS--LSTFGQGTKVEV-- 107 usage_00035.pdb 58 GVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGQS--LSTFGQGTKVEV-- 107 usage_00036.pdb 58 GVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGQS--LSTFGQGTKVEV-- 107 usage_00037.pdb 58 GVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGQS--LSTFGQGTKVEV-- 107 usage_00038.pdb 58 GVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGQS--LSTFGQGTKVEV-- 107 usage_00043.pdb 58 GVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGLS--TFGQGT--KVEV-- 105 usage_00044.pdb 58 GVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGQS--LSTFGQGTKVEV-- 107 usage_00045.pdb 58 GVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGQS--LSTFGQGTKVEV-- 107 usage_00046.pdb 58 GVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGQS--LSTFGQGTKVEV-- 107 usage_00047.pdb 58 GVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGQS--LSTFGQGTKVEV-- 107 usage_00048.pdb 58 GVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGQS--LSTFGQGTKVEV-- 107 usage_00049.pdb 58 GVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGQS--LSTFGQGTKVEV-- 107 usage_00050.pdb 58 GVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGQS--LSTFGQGTKVEV-- 107 usage_00064.pdb 58 GVPDRFVGSGSGTNYTLTIASVEAEDFAVYFCQCF------EGFGQGTKLEI-- 103 usage_00117.pdb 58 GVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGQS--LSTFGQGTKVEV-- 107 usage_00118.pdb 57 GVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGQS--LSTFGQGTKVEV-- 106 usage_00150.pdb 57 GVPARFSGSGSGAEFTLTISSLQSEDFAVYYCQQYNNWPPRYTFGQGTRLEI-- 108 usage_00174.pdb 57 GVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGQS--LSTFGQGTKVEV-- 106 usage_00206.pdb 58 GVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGQS--LSTFGQGTKVEV-- 107 usage_00207.pdb 57 GVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGQS--LSTFGQGTKVEV-- 106 usage_00208.pdb 58 GIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSS--PSTFGQGTKVEI-- 107 usage_00209.pdb 58 GIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSS--PSTFGQGTKVEIKR 109 usage_00231.pdb 58 GIPDRFSGSGSGTDFTLSISRLEPEDFAVYYCLHYGTS--PMYFFGRGTVLDI- 108 usage_00247.pdb 55 GVPARFSGSGSGAEFTLTISSLQSEDFAVYYCQQYNNWPPRYTFGQGTRLEI-- 106 usage_00253.pdb 57 GVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGQS--LSTFGQGTKVEV-- 106 usage_00268.pdb 56 GIPDRLSGSGSGTDFTLTITRLEPEDFAVYYCQQYDSS--AITFGQGTRLEI-- 105 usage_00289.pdb 57 GVPARFSGSGSGAEFTLTISSLQSEDFAVYYCQQYNNWPPRYTFGQGTRLEI-- 108 usage_00297.pdb 57 GVPARFSGSGSGTDFTLTISSLEPEDFAVYYCHQYSDI--SPTFGQGTKVEI-- 106 usage_00301.pdb 57 GIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSS--PLTFGQGTKVEI-- 106 usage_00318.pdb 58 GIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQF------EFFGLGSELEV-- 103 usage_00332.pdb 57 GIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYADS--PITFGQGTRLEI-- 106 usage_00333.pdb 57 GIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYADS--PITFGQGTRLEI-- 106 usage_00335.pdb 58 GVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGQS--LSTFGQGTKVEV-- 107 usage_00336.pdb 58 GVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGQS--LSTFGQGTKVEV-- 107 usage_00351.pdb 59 GIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQSNED--PRTFGQGTKLEI-- 108 usage_00353.pdb 56 GIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNW--PLTFGGGTKVEI-- 105 usage_00365.pdb 56 GIPARLSGSASGTEFTLTISSLQSEDFAVYYCQQYNNW--PYTFGQGTKLEI-- 105 G R sGSgSG fTLtI l EDFAVYyC fg e #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################