################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:29:43 2021 # Report_file: c_0038_3.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00042.pdb # 2: usage_00044.pdb # 3: usage_00089.pdb # 4: usage_00092.pdb # 5: usage_00099.pdb # 6: usage_00100.pdb # 7: usage_00101.pdb # 8: usage_00102.pdb # 9: usage_00111.pdb # 10: usage_00112.pdb # 11: usage_00117.pdb # # Length: 229 # Identity: 16/229 ( 7.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 42/229 ( 18.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 47/229 ( 20.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00042.pdb 1 --VNLAGSKIAPALIAGNVIAFKPPTQGSI-SGLLLAEAFAEAGLPAGVFNTITG----R 53 usage_00044.pdb 1 ---VLAARAIAYPLVCGNTVVFKGSEFSPA-THALITQCVQEAGLPAGVLNYLNSSPDRS 56 usage_00089.pdb 1 --LSISMKKIAHTLAVGNTVVYKPASDTPV-TGWLIAQMVAKAGLPKGVFNLVIG----P 53 usage_00092.pdb 1 YPLFDAVNKITYSFIYGNAVVVKPSISDPL-PAAMAVKALLDAGFPPDAIALLNL----P 55 usage_00099.pdb 1 --LSISMKKIAHTLAVGNTVVYKPASDTPV-TGWLIAQMVAKAGLPKGVFNLVIG----P 53 usage_00100.pdb 1 --LSISMKKIAHTLAVGNTVVYKPASDTPV-TGWLIAQMVAKAGLPKGVFNLVIG----P 53 usage_00101.pdb 1 --LSISMKKIAHTLAVGNTVVYKPASDTPV-TGWLIAQMVAKAGLPKGVFNLVIG----P 53 usage_00102.pdb 1 --LSISMKKIAHTLAVGNTVVYKPASDTPV-TGWLIAQMVAKAGLPKGVFNLVIG----P 53 usage_00111.pdb 1 ---------VAPALAVGNAVVIKPASDTPVTGGVIPARIFEEAGVPAGVISTVAG----A 47 usage_00112.pdb 1 FPLNLSIRSVAPALAVGNAVVIKPASDTPVTGGVIPARIFEEAGVPAGVISTVAG----A 56 usage_00117.pdb 1 ---IGIAKKLSAALAAGCPSVIKPASETPL-T-IAFFSV-DKLDLPDGVN-L-VG----K 48 l Gn v Kp p ag P gv usage_00042.pdb 54 GSEIGDYIVEHQAVNFINFTGSTGIGERIGKMAG----MRPIMLELGGKDSAIVLEDADL 109 usage_00044.pdb 57 -PEIADALISAKEIRRINFTGSTRVGSIIAQKAA-Q-HLKRCLLELGGKSPLIVLDDADI 113 usage_00089.pdb 54 GPVVGEEIVTHKRVAHVTFTGESSTGREIAAKAA-G-TLKTVTLELGGSDPLIILDDVDV 111 usage_00092.pdb 56 GKE-AEKIVADDRVAAVSFTGSTEVGERVVKVGG----VKQYVMELGGGDPAIVLEDADL 110 usage_00099.pdb 54 GPVVGEEIVTHKRVAHVTFTGESSTGREIAAKAA-G-TLKTVTLELGGSDPLIILDDVDV 111 usage_00100.pdb 54 GPVVGEEIVTHKRVAHVTFTGESSTGREIAAKAA-G-TLKTVTLELGGSDPLIILDDVDV 111 usage_00101.pdb 54 GPVVGEEIVTHKRVAHVTFTGESSTGREIAAKAA-G-TLKTVTLELGGSDPLIILDDVDV 111 usage_00102.pdb 54 GPVVGEEIVTHKRVAHVTFTGESSTGREIAAKAA-G-TLKTVTLELGGSDPLIILDDVDV 111 usage_00111.pdb 48 GSEIGDHFVTHAVPKLISFTGSTPVGRRVGELAINGGPMKTVALELGGNAPFVVLADADI 107 usage_00112.pdb 57 GSEIGDHFVTHAVPKLISFTGSTPVGRRVGELAINGGPMKTVALELGGNAPFVVLADADI 116 usage_00117.pdb 49 ASVIGKVLCEHKDVP-LSFTGSTEVGRKLIVDTA-E-QVKKLALELGGNAPFIVFDDADL 105 FTG G k lELGG p l D D usage_00042.pdb 110 ELTAKNIIAGAFGYSGQRC-TAVKRVLVMESVADELVEKIREKVLALTIGNPE-DD-ADI 166 usage_00044.pdb 114 NAAVKAAVFGSFLFQGQIC-MSTERLVVDEKIADEFVARFVEKTERLSVGDPCLTGDCII 172 usage_00089.pdb 112 DYAARLAVFASLFHQGQIC-TSAKRIIVHKAVADKFIERYVHYVKMLRIDDPRKDEKVDL 170 usage_00092.pdb 111 DLAADKIARGIYSYAGQRC-DAIKLVLAERPVYGKLVEEVAKRLSSLRVGDPR-DPTVDV 168 usage_00099.pdb 112 DYAARLAVFASLFHQGQIC-TSAKRIIVHKAVADKFIERYVHYVKMLRIDDPRKDEKVDL 170 usage_00100.pdb 112 DYAARLAVFASLFHQGQIC-TSAKRIIVHKAVADKFIERYVHYVKMLRIDDPRKDEKVDL 170 usage_00101.pdb 112 DYAARLAVFASLFHQGQIC-TSAKRIIVHKAVADKFIERYVHYVKMLRIDDPRKDEKVDL 170 usage_00102.pdb 112 DYAARLAVFASLFHQGQIC-TSAKRIIVHKAVADKFIERYVHYVKMLRIDDPRKDEKVDL 170 usage_00111.pdb 108 DAAAQAAAVGAFLH-QGQICMSINRVIVDAAVHDEFLEKFVEAVKNIPTGDPS-AEGTLV 165 usage_00112.pdb 117 DAAAQAAAVGAFLHQGQIC-MSINRVIVDAAVHDEFLEKFVEAVKNIPTGDPS-AG-TLV 173 usage_00117.pdb 106 EAAADNLIANKFRGGGQTC-VCANRIFVHEKVADAFGQKLAERVNK-TVGDGN-DG-IDI 161 aa gq c r v v d dp usage_00042.pdb 167 TPLIDTKSADYVEGLINDANDKGATALTEI-KR--EG-NLICPILFDK- 210 usage_00044.pdb 173 GPMVSPNSGERINGLFKDAIDKGAKVVCGG-MA--QG-AVMPATILDH- 216 usage_00089.pdb 171 GPLINERQVALMKEFVDDAVSRGGRLLIGG-RS--WG-NFFEPAIFVD- 214 usage_00092.pdb 169 GPLISPSAVDEMMAAIEDAVEKGGRVLAGG-RR--LGPTYVQPTLVEAP 214 usage_00099.pdb 171 GPLINERQVALMKEFVDDAVSRGGRLLIGG-RS--WG-NFFEPAIFVD- 214 usage_00100.pdb 171 GPLINERQVALMKEFVDDAVSRGGRLLIGG-RS--WG------------ 204 usage_00101.pdb 171 GPLINERQVALMKEFVDDAVSRGGRLLIGG-RS--WG------------ 204 usage_00102.pdb 171 GPLINERQVALMKEFVDDAVSRGGRLLIGG-RS--W------------- 203 usage_00111.pdb 166 GPVINDSQLSGLKEKIELAKKEGATVQVEG-PI--EG-RLVHPHVFSD- 209 usage_00112.pdb 174 GPVINDSQLSGLKEKIELAKKEGATVQVEG-PI--EG-RLVHPHVFSD- 217 usage_00117.pdb 162 GPLINKQGFDKVKRHLQDALDKGASLVAGKQPAEL----FFPPTVVQ-- 204 gP i A G #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################