################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:10:43 2021 # Report_file: c_1135_66.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00053.pdb # 2: usage_00059.pdb # 3: usage_00068.pdb # 4: usage_00073.pdb # 5: usage_00078.pdb # 6: usage_00083.pdb # 7: usage_00758.pdb # 8: usage_01100.pdb # 9: usage_01106.pdb # 10: usage_01134.pdb # 11: usage_01136.pdb # # Length: 84 # Identity: 4/ 84 ( 4.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 50/ 84 ( 59.5%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 34/ 84 ( 40.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00053.pdb 1 VQQKQAQEILTKFQDNP--------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWK 52 usage_00059.pdb 1 VQQKQAQEILTKFQDNP--------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWK 52 usage_00068.pdb 1 VQQKQAQEILTKFQDNP--------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWK 52 usage_00073.pdb 1 VQQKQAQEILTKFQDNP--------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWK 52 usage_00078.pdb 1 VQQKQAQEILTKFQDNP--------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWK 52 usage_00083.pdb 1 ----------GAMEGILDFSNDLDIALLDQVVSTFYQG-SGVQQKQAQEILTKFQDN--- 46 usage_00758.pdb 1 VQQKQAQEILTKFQDNP--------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWK 52 usage_01100.pdb 1 VQQKQAQEILTKFQDNP--------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWK 52 usage_01106.pdb 1 VQQKQAQEILTKFQDNP--------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWK 52 usage_01134.pdb 1 VQQKQAQEILTKFQDNP--------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWK 52 usage_01136.pdb 1 VQQKQAQEILTKFQDNP--------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWK 52 tkfqdnp dawqkadqilqfs npqskfiAlsILdKlitr usage_00053.pdb 53 LLPNDHRIGIRNFVVGMIISMCQD 76 usage_00059.pdb 53 LLPNDHRIGIRNFVVGMIISMCQD 76 usage_00068.pdb 53 LLPNDHRIGIRNFVVGMIISMCQD 76 usage_00073.pdb 53 LLPNDHRIGIRNFVVGMIISMCQD 76 usage_00078.pdb 53 LLPNDHRIGIRNFVVGMIISMCQD 76 usage_00083.pdb 47 ---P-DAWQKADQILQ-------- 58 usage_00758.pdb 53 LLPNDHRIGIRNFVVGMIISMCQD 76 usage_01100.pdb 53 LLPNDHRIGIRNFVVGMIISMCQD 76 usage_01106.pdb 53 LLPNDHRIGIRNFVVGMIISMCQD 76 usage_01134.pdb 53 LLPNDHRIGIRNFVVGMIISMCQD 76 usage_01136.pdb 53 LLPNDHRIGIRNFVVGMIISMCQD 76 n hrigirnfvvg #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################