################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:08:26 2021 # Report_file: c_0264_1.html ################################################################################################ #==================================== # Aligned_structures: 14 # 1: usage_00001.pdb # 2: usage_00002.pdb # 3: usage_00003.pdb # 4: usage_00004.pdb # 5: usage_00005.pdb # 6: usage_00006.pdb # 7: usage_00007.pdb # 8: usage_00008.pdb # 9: usage_00011.pdb # 10: usage_00014.pdb # 11: usage_00017.pdb # 12: usage_00018.pdb # 13: usage_00026.pdb # 14: usage_00035.pdb # # Length: 178 # Identity: 18/178 ( 10.1%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 46/178 ( 25.8%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 41/178 ( 23.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 --QKRNEEAKKLLAEAGFTAD------K----PLTFDLLYNT-SDLHKKLAIAVASIWKK 47 usage_00002.pdb 1 SQQKRNEEAKKLLAEAGFTAD------K----PLTFDLLYNT-SDLHKKLAIAVASIWKK 49 usage_00003.pdb 1 -QEKRNEEAKKLLAEAGYTAD------K----PLTINLLYNT-SDLHKKLAIAASSLWKK 48 usage_00004.pdb 1 -QEKRNEEAKKLLAEAGYTAD------K----PLTINLLYNT-SDLHKKLAIAASSLWKK 48 usage_00005.pdb 1 SQEKRNEEAKKLLAEAGYTAD------K----PLTINLLYNT-SDLHKKLAIAASSLWKK 49 usage_00006.pdb 1 SQEKRNEEAKKLLAEAGYTAD------K----PLTINLLYNT-SDLHKKLAIAASSLWKK 49 usage_00007.pdb 1 -QEKRNEEAKKLLAEAGYTAD------K----PLTINLLYNT-SDLHKKLAIAASSLWKK 48 usage_00008.pdb 1 -QEKRNEEAKKLLAEAGYTAD------K----PLTINLLYNT-SDLHKKLAIAASSLWKK 48 usage_00011.pdb 1 --QKRNEEAKKLLAEAGFTAD------K----PLTFDLLYNT-SDLHKKLAIAVASIWKK 47 usage_00014.pdb 1 --QKRNEEAKKLLAEAGFTAD------K----PLTFDLLYNT-SDLHKKLAIAVASIWKK 47 usage_00017.pdb 1 -MARRVDYAKNLLKQAGHGDA------N----PLTFTLTYNT-NDLHKKVALFAASEWRT 48 usage_00018.pdb 1 TQEKRNEVAKKLLAEAGYTKD------N----PLKFSLLYNT-SDLHKKLAIAAASIWKK 49 usage_00026.pdb 1 SQEELNAQAKTLLSAAGYGPQ------K----PLKLTLLYNT-SENHQKIAIAVASMWKK 49 usage_00035.pdb 1 -----PQKAKALLEKAGWTLPAGKDIREKNGQPLRIELSFIGTDALSKSMAEIIQADMRQ 55 AK LL AG PL L ynt lhkk A s w usage_00001.pdb 48 NLGVNVNLENQEWKTFLDTRHQGTFDVARAGWCADYNEPTSFLNTMLSDSSNNTAHYK-- 105 usage_00002.pdb 50 NLGVNVNLENQEWKTFLDTRHQGTFDVARAGWCADYNEPTSFLNTMLSDSSNNTAHYK-- 107 usage_00003.pdb 49 NIGVNVKLVNQEWKTFLDTRHQGTFDVARAGWCADYNEPTSFLNTMLSNSSMNTAHYK-- 106 usage_00004.pdb 49 NIGVNVKLVNQEWKTFLDTRHQGTFDVARAGWCADYNEPTSFLNTMLSNSSMNTAHYK-- 106 usage_00005.pdb 50 NIGVNVKLVNQEWKTFLDTRHQGTFDVARAGWCADYNEPTSFLNTMLSNSSMNTAHYK-- 107 usage_00006.pdb 50 NIGVNVKLVNQEWKTFLDTRHQGTFDVARAGWCADYNEPTSFLNTMLSNSSMNTAHYK-- 107 usage_00007.pdb 49 NIGVNVKLVNQEWKTFLDTRHQGTFDVARAGWCADYNEPTSFLNTMLSNSSMNTAHYK-- 106 usage_00008.pdb 49 NIGVNVKLVNQEWKTFLDTRHQGTFDVARAGWCADYNEPTSFLNTMLSNSSMNTAHYK-- 106 usage_00011.pdb 48 NLGVNVNLENQEWKTFLDTRHQGTFDVARAGWCADYNEPTSFLNTMLSDSSNNTAHYK-- 105 usage_00014.pdb 48 NLGVNVNLENQEWKTFLDTRHQGTFDVARAGWCADYNEPTSFLNTMLSDSSNNTAHYK-- 105 usage_00017.pdb 49 KLGVTAKLENVEFKVLMKQRHDGKVQIARDGWFADYNDAMTFFDLIRCGSSQNTVGYC-- 106 usage_00018.pdb 50 NLGVDVKLENQEWKTFLDTRHQGTYDVARAAWCADYNEPSSFLNMMLSNSSNNTTHYK-- 107 usage_00026.pdb 50 NLGVDVKLQNQEWKTYIDSRNTGNFDVIRASWVGDYNEPSTFLTLLTSTHSGNISRFN-- 107 usage_00035.pdb 56 -IGADVSLIGEEESSIYARQRDGRFGMIFHRTWGAPYDPHAFLSSMR--VPSIAD---FQ 109 Gv v L n E k r G r w dyn p Fl s n usage_00001.pdb 106 -------SPAFDKLIADTLKVADDTQRSELYAKAEQQLDKDSAIVPVYYYVNAR---- 152 usage_00002.pdb 108 -------SPAFDKLIADTLKVADDTQRSELYAKAEQQLDKDSAIVPVYYYVNARLV-K 157 usage_00003.pdb 107 -------SPAFDSIMAETLKVTDEAQRTALYTKAEQQLDKDSAIVPVY---------- 147 usage_00004.pdb 107 -------SPAFDSIMAETLKVTDEAQRTALYTKAEQQLDKDSAIVPVYYYVN------ 151 usage_00005.pdb 108 -------SPAFDSIMAETLKVTDEAQRTALYTKAEQQLDKDSAIVPVYYYVNAR---- 154 usage_00006.pdb 108 -------SPAFDSIMAETLKVTDEAQRTALYTKAEQQLDKDSAIVPVYYYVNAR---- 154 usage_00007.pdb 107 -------SPAFDSIMAETLKVTDEAQRTALYTKAEQQLDKDSAIVPVY---------- 147 usage_00008.pdb 107 -------SPAFDSIMAETLKVTDEAQRTALYTKAEQQLDKDSAIVPVYYYVNARL-VK 156 usage_00011.pdb 106 -------SPAFDKLIADTLKVADDTQRSELYAKAEQQLDKDSAIVPVY---------- 146 usage_00014.pdb 106 -------SPAFDKLIADTLKVADDTQRSELYAKAEQQLDKDSAIVPVYYYVNARLV-K 155 usage_00017.pdb 107 -------NPKVDSLVAEANQKLDDGARAALLTQAHDLAMNDYPMVPLF---------- 147 usage_00018.pdb 108 -------SSVFDKLIEDTLKVKSEKERADLYQQAEIQLDKDSAIVPVFYYVSAR---- 154 usage_00026.pdb 108 -------NPAYDKVLAQASTENTVKARNADYNAAEKILMEQAPIAPIY---------- 148 usage_00035.pdb 110 AQQGLADKPLIDKEIGEVLATHDETQRQALYRDILTRLHDEAVYLPISYISMMVV--S 165 p D R ly a l P #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################