################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 22:55:14 2021 # Report_file: c_0346_5.html ################################################################################################ #==================================== # Aligned_structures: 3 # 1: usage_00004.pdb # 2: usage_00005.pdb # 3: usage_00024.pdb # # Length: 112 # Identity: 85/112 ( 75.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 91/112 ( 81.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 21/112 ( 18.8%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00004.pdb 1 LKTTTTVAISKDFTEDRIWLNGREEDVGQPRLQACLREIRRLAR-KDTLP-LSLSYKVHV 58 usage_00005.pdb 1 LKTTTTVAISKDFTEDRIWLNGREEDVGQPRLQACLREIRRLARKR----RLSLSYKVHV 56 usage_00024.pdb 1 ---TTTAVISKDFTEDRIWLNGREEDVGQPRLQACLREIRCLA------------CKVHV 45 TTTvaISKDFTEDRIWLNGREEDVGQPRLQACLREIRrLA yKVHV usage_00004.pdb 59 ASVNNFPTAAGLASSAAGYACLAYTLAQVYGVEGDLSEVARRGSGSACRSL- 109 usage_00005.pdb 57 ASVNNFP-----ASSAAGYACLAYTLAQVYGVEGDLSEVARRGSGSACRSL- 102 usage_00024.pdb 46 ASVNNFPT---LASSAAGYACLAYTLARVYGVESDLSEVARRGSGSACRSLY 94 ASVNNFP ASSAAGYACLAYTLAqVYGVEgDLSEVARRGSGSACRSL #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################