################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:49:47 2021 # Report_file: c_0447_11.html ################################################################################################ #==================================== # Aligned_structures: 12 # 1: usage_00053.pdb # 2: usage_00054.pdb # 3: usage_00099.pdb # 4: usage_00100.pdb # 5: usage_00101.pdb # 6: usage_00106.pdb # 7: usage_00107.pdb # 8: usage_00168.pdb # 9: usage_00169.pdb # 10: usage_00170.pdb # 11: usage_00219.pdb # 12: usage_00220.pdb # # Length: 121 # Identity: 32/121 ( 26.4%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 32/121 ( 26.4%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 40/121 ( 33.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00053.pdb 1 STRRLILVGRTGAGKSATGNSILGQRRF----------TRACTTGSRRWDKCHVEVVDTP 50 usage_00054.pdb 1 -TRRLILVGRTGAGKSATGNSILGQRRF----------TRACTTGSRRWDKCHVEVVDTP 49 usage_00099.pdb 1 SELRIILVGKTGTGKSAAGNSILRKQAFES-KLGSQTLTKTCSKSQGSWGNREIVIIDTP 59 usage_00100.pdb 1 SELRIILVGKTGTGKSAAGNSILRKQAFES-KLGSQTLTKTCSKSQGSWGNREIVIIDTP 59 usage_00101.pdb 1 SELRIILVGKTGTGKSAAGNSILRKQAFESKLG-SQTLTKTCSKSQGSWGNREIVIIDTP 59 usage_00106.pdb 1 RSLRIVLVGKTGSGKSATANTILGEEIFDS-RIAAQAVTKNCQKASREWQGRDLLVVDTP 59 usage_00107.pdb 1 -SLRIVLVGKTGSGKSATANTILGEEIFDS-RIAAQAVTKNCQKASREWQGRDLLVVDTP 58 usage_00168.pdb 1 SELRIILVGKTGTGKSAAGNSILRK-----------TLTKTCSKSQG-----EIVIIDTP 44 usage_00169.pdb 1 SELRIILVGKTGTGKSAAGNSILR----------------TCSKSQGSW--REIVIIDTP 42 usage_00170.pdb 1 SELRIILVGKTGTGKSAAGNSILRKQAFES-T-----LTKTCSKSQGSWGNREIVIIDTP 54 usage_00219.pdb 1 SELRIILVGKTGTGKSAAGNSILRKQAFES-KLGSQTLTKTCSKSQGSWGNREIVIIDTP 59 usage_00220.pdb 1 SELRIILVGKTGTGKSAAGNSILRKQAFES--------TKTCSKSQGSWGNREIVIIDTP 52 R LVG TG GKSA N IL C DTP usage_00053.pdb 51 DIFSS---Q--VSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMF 105 usage_00054.pdb 50 DIFSS---Q--VSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMF 104 usage_00099.pdb 60 DMFSW--KDH-CEAL---YKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRV---- 109 usage_00100.pdb 60 DMFSW--KDH-CEAL---YKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRV---- 109 usage_00101.pdb 60 D-FSW--KDH-CEAL---YKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQR----- 107 usage_00106.pdb 60 GL---FDTKESLDTT---CKEISRCIISSCPGPHAIVLVLQLGRYTEEEQKTVALIKAV- 112 usage_00107.pdb 59 GL---FDTKESLDTT---CKEISRCIISSCPGPHAIVLVLQLGRYTEEEQKTVALIKAVF 112 usage_00168.pdb 45 DMFSW--KDH-CEAL---YKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIF 98 usage_00169.pdb 43 DMFSW--KDH-CEAL---YKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIF 96 usage_00170.pdb 55 DMFSW--KDH-CEAL---YKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQR----- 103 usage_00219.pdb 60 DMFSW--KDH-CEAL---YKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIF 113 usage_00220.pdb 53 DMFSW--KDH-CEAL---YKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRV---- 102 E C S PGPH LV QLGR T Q usage_00053.pdb 106 G 106 usage_00054.pdb 105 G 105 usage_00099.pdb - usage_00100.pdb - usage_00101.pdb - usage_00106.pdb - usage_00107.pdb 113 G 113 usage_00168.pdb 99 G 99 usage_00169.pdb 97 G 97 usage_00170.pdb - usage_00219.pdb 114 G 114 usage_00220.pdb - #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################