################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:15:24 2021 # Report_file: c_1396_74.html ################################################################################################ #==================================== # Aligned_structures: 15 # 1: usage_00393.pdb # 2: usage_00394.pdb # 3: usage_00395.pdb # 4: usage_00396.pdb # 5: usage_00397.pdb # 6: usage_00401.pdb # 7: usage_00402.pdb # 8: usage_00419.pdb # 9: usage_00420.pdb # 10: usage_00421.pdb # 11: usage_01602.pdb # 12: usage_01603.pdb # 13: usage_01604.pdb # 14: usage_01605.pdb # 15: usage_01606.pdb # # Length: 62 # Identity: 42/ 62 ( 67.7%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 42/ 62 ( 67.7%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 20/ 62 ( 32.3%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00393.pdb 1 NLKVVLVSFKQCLDEKEEVLLDPYIASWKGLVRFLNSLGTIFSFISKDVVSKLRIMERLR 60 usage_00394.pdb 1 -LKVVLVSFKQCLDEKEEVLLDPYIASWKGLVRFLNSLGTIFSFI--------------- 44 usage_00395.pdb 1 -LKVVLVSFKQCLDEKEEVLLDPYIASWKGLVRFLNSLGTIFSFISKDVVSKLRIMERLR 59 usage_00396.pdb 1 --KVVLVSFKQCLDEKEEVLLDPYIASWKGLVRFLNSLGTIFSFISKDVVSKLRIMERLR 58 usage_00397.pdb 1 -LKVVLVSFKQCLDEKEEVLLDPYIASWKGLVRFLNSLGTIFSFI--------------- 44 usage_00401.pdb 1 -LKVVLVSFKQCLDEKEEVLLDPYIASWKGLVRFLNSLGTIFSFISKDVVSKLRIMERLR 59 usage_00402.pdb 1 -LKVVLVSFKQCLDEKEEVLLDPYIASWKGLVRFLNSLGTIFSFISKDVVSKLRIMERLR 59 usage_00419.pdb 1 -LKVVLVSFKQCLDEKEEVLLDPYIASWKGLVRFLNSLGTIFSFISKDVVSKLRIMERLR 59 usage_00420.pdb 1 --KVVLVSFKQCLDEKEEVLLDPYIASWKGLVRFLNSLGTIFSFISKDVVSKLRIMERLR 58 usage_00421.pdb 1 -LKVVLVSFKQCLDEKEEVLLDPYIASWKGLVRFLNSLGTIFSFISKDVVSKLRIMERLR 59 usage_01602.pdb 1 -LKVVLVSFKQCLDEKEEVLLDPYIASWKGLVRFLNSLGTIFSFI--------------- 44 usage_01603.pdb 1 NLKVVLVSFKQCLDEKEEVLLDPYIASWKGLVRFLNSLGTIFSFISKDVVSKLRIMERLR 60 usage_01604.pdb 1 -LKVVLVSFKQCLDEKEEVLLDPYIASWKGLVRFLNSLGTIFSFISKDVVSKLRIMERLR 59 usage_01605.pdb 1 ---VVLVSFKQCLDEKEEVLLDPYIASWKGLVRFLNSLGTIFSFISKDVVSKLRIMERLR 57 usage_01606.pdb 1 -LKVVLVSFKQCLDEKEEVLLDPYIASWKGLVRFLNSLGTIFSFISKDVVSKLRIMERLR 59 VVLVSFKQCLDEKEEVLLDPYIASWKGLVRFLNSLGTIFSFI usage_00393.pdb 61 G- 61 usage_00394.pdb -- usage_00395.pdb 60 G- 60 usage_00396.pdb 59 G- 59 usage_00397.pdb -- usage_00401.pdb 60 G- 60 usage_00402.pdb 60 GG 61 usage_00419.pdb 60 GG 61 usage_00420.pdb 59 GG 60 usage_00421.pdb 60 GG 61 usage_01602.pdb -- usage_01603.pdb 61 GG 62 usage_01604.pdb 60 GG 61 usage_01605.pdb 58 GG 59 usage_01606.pdb 60 GG 61 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################