################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:06:14 2021 # Report_file: c_0617_34.html ################################################################################################ #==================================== # Aligned_structures: 4 # 1: usage_00028.pdb # 2: usage_00229.pdb # 3: usage_00236.pdb # 4: usage_00333.pdb # # Length: 92 # Identity: 19/ 92 ( 20.7%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 41/ 92 ( 44.6%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 18/ 92 ( 19.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00028.pdb 1 LPPFKAAIQGGVDAVNA---HLIPAWDQQ------------YPATLSPAILTGQLRHKLG 45 usage_00229.pdb 1 -YPFQKAIDAGADMVMTA-HVQFPAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMG 58 usage_00236.pdb 1 -YPFQKAIDAGADMVMTA-HVQFPAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMG 58 usage_00333.pdb 1 LLPFRKVLEREKKVTVMTAHVRYSSID-S------------LPATLSEKIITDVLREKIG 47 PF kai g d v v pa D PATLS k Tg LR G usage_00028.pdb 46 FKGLIVTDALV-GGITQFAAPDTVVVQAIAAG 76 usage_00229.pdb 59 FNGVIVTDALNMKAIADHFGQEEAVVMAVKAG 90 usage_00236.pdb 59 FNGVIVTDALNMKAIADHFGQEEAVVMAVKAG 90 usage_00333.pdb 48 FDGLVISDAMEMSAVSNNFSVEEIVSLFLNAG 79 F G ivtDAl ai f ee Vv a AG #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################