################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:16:06 2021 # Report_file: c_1012_52.html ################################################################################################ #==================================== # Aligned_structures: 14 # 1: usage_00114.pdb # 2: usage_00116.pdb # 3: usage_00139.pdb # 4: usage_00140.pdb # 5: usage_00141.pdb # 6: usage_00142.pdb # 7: usage_00166.pdb # 8: usage_00189.pdb # 9: usage_00493.pdb # 10: usage_00494.pdb # 11: usage_00495.pdb # 12: usage_00521.pdb # 13: usage_00551.pdb # 14: usage_00590.pdb # # Length: 70 # Identity: 9/ 70 ( 12.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 12/ 70 ( 17.1%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 32/ 70 ( 45.7%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00114.pdb 1 SINAKLVLLGDVGAGKSSLVLRFVKDQFVE-FQESTI--------GAAFFSQTLAVNDAT 51 usage_00116.pdb 1 SINAKLVLLGDVGAGKSSLVLRFV---------------------A-AFFSQTLAVNDAT 38 usage_00139.pdb 1 --SIKILLIGDSGVGKSCLLVRFVEDKFNP-----SF-ITT-IG-I-DFKIKTVDINGKK 49 usage_00140.pdb 1 ---IKILLIGDSGVGKSCLLVRFVEDKFNP---------------I-DFKIKTVDINGKK 41 usage_00141.pdb 1 -SIMKILLIGDSGVGKSCLLVRFVEDKFNP-----SF-ITT-IGI--DFKIKTVDINGKK 50 usage_00142.pdb 1 -SIMKILLIGDSGVGKSCLLVRFVEDKFNP-----SF-ITT-IGI--DFKIKTVDINGKK 50 usage_00166.pdb 1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTE-----SY-ISTI-G-V-DFKIRTIELDGKT 51 usage_00189.pdb 1 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLA-----GTFIST-VGI--DFRNKVLDVDGVK 52 usage_00493.pdb 1 DALFKLLLIGDSGVGKSCLLLRFADDTYTE-----SY-IST-IGV--DFKIRTIELDGKT 51 usage_00494.pdb 1 DALFKLLLIGDSGVGKSCLLLRFADDTYTE-----SY-IST-IGV--DFKIRTIELDGKT 51 usage_00495.pdb 1 -ALFKLLLIGDSGVGKSCLLLRFADDTYTE-----SY-IST-IGV--DFKIRTIELDGKT 50 usage_00521.pdb 1 -LLFKLLLIGDSGVGKTCVLFRFSDDAFNT-----TF-IST-IGI--DFKIKTVELQGKK 50 usage_00551.pdb 1 SINAKLVLLGDVGAGKSSLVLRFV---------------------A-AFFSQTLAVNDAT 38 usage_00590.pdb 1 AYLFKYIIIGDTGVGKSCLLLQFTD-----LTIGV------------EFGARMITIDGKQ 43 K l GD G GK l rF F usage_00114.pdb 52 VKFEIWDTA- 60 usage_00116.pdb 39 VKFEIWDTA- 47 usage_00139.pdb 50 VKLQIWDTA- 58 usage_00140.pdb 42 VKLQ------ 45 usage_00141.pdb 51 VKLQIWDTA- 59 usage_00142.pdb 51 VKLQIWDTA- 59 usage_00166.pdb 52 IKLQIWD--- 58 usage_00189.pdb 53 VKLQMWDTA- 61 usage_00493.pdb 52 IKLQIWDTA- 60 usage_00494.pdb 52 IKLQIWDTA- 60 usage_00495.pdb 51 IKLQIWDTA- 59 usage_00521.pdb 51 IKLQIWDTA- 59 usage_00551.pdb 39 VKFEIWDTA- 47 usage_00590.pdb 44 IKLQIWDTAG 53 K #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################