################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:23:49 2021 # Report_file: c_1409_148.html ################################################################################################ #==================================== # Aligned_structures: 25 # 1: usage_00400.pdb # 2: usage_00401.pdb # 3: usage_00538.pdb # 4: usage_00539.pdb # 5: usage_00540.pdb # 6: usage_00864.pdb # 7: usage_00865.pdb # 8: usage_00866.pdb # 9: usage_00867.pdb # 10: usage_01118.pdb # 11: usage_01119.pdb # 12: usage_01120.pdb # 13: usage_01121.pdb # 14: usage_01389.pdb # 15: usage_01390.pdb # 16: usage_01391.pdb # 17: usage_01553.pdb # 18: usage_01554.pdb # 19: usage_01555.pdb # 20: usage_01556.pdb # 21: usage_01666.pdb # 22: usage_01667.pdb # 23: usage_01668.pdb # 24: usage_01712.pdb # 25: usage_01713.pdb # # Length: 77 # Identity: 22/ 77 ( 28.6%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 22/ 77 ( 28.6%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 34/ 77 ( 44.2%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00400.pdb 1 --NFKFRWQLESLKSQ-E--------------RNWNDEWDNLIKMASTDTPM-A-GL--Q 39 usage_00401.pdb 1 --NFKFRWQLESLKSQ-E--------------RNWNDEWDNLIKMASTDTPMARSGL--Q 41 usage_00538.pdb 1 --NFKFRWQLESLKSQ----------------RNWNDEWDNLIKMAST-----------Q 31 usage_00539.pdb 1 TRNFKFRWQLESLK-------------------NWNDEWDNLIKMASTD----------Q 31 usage_00540.pdb 1 TRNFKFRWQLESLK--------------------WNDEWDNLIKMASTL----------Q 30 usage_00864.pdb 1 -RNFKFRWQLESLKS------------------NWNDEWDNLIKMASTDTP-----L--Q 34 usage_00865.pdb 1 TRNFKFRWQLESLKS-------------------WNDEWDNLIKMASTDTP----GL--Q 35 usage_00866.pdb 1 TRNFKFRWQLESLKSQ----------EF-V----WNDEWDNLIKMASTDTP----GL--Q 39 usage_00867.pdb 1 TRNFKFRWQLESLKSQ----------EF-VE---WNDEWDNLIKMASTDTP----GL--Q 40 usage_01118.pdb 1 TRNFKFRWQLESLKSQ-----------------NWNDEWDNLIKMASTDT------L--Q 35 usage_01119.pdb 1 TRNFKFRWQLESLKS------------------NWNDEWDNLIKMASTD-------L--Q 33 usage_01120.pdb 1 TRNFKFRWQLESLKSQ-E--F------------NWNDEWDNLIKMASTDT------L--Q 37 usage_01121.pdb 1 TRNFKFRWQLESLKSQD--------------TRNWNDEWDNLIKMASTDT---------Q 37 usage_01389.pdb 1 -RNFKFRWQLESLKSQ--E-FVE-----Y-DTRNWNDEWDNLIKMASTDTPMARSGL--Q 48 usage_01390.pdb 1 -RNFKFRWQLESLKSQ--E-FVE-----Y-DTRNWNDEWDNLIKMASTDTPMARSGL--Q 48 usage_01391.pdb 1 -RNFKFRWQLESLKSQ--E-FVE-----Y-DTRNWNDEWDNLIKMASTDTPMARSGL--Q 48 usage_01553.pdb 1 KEALKRRWRWQQTQQN-K-ES----GLV-YTEDEWQKEWNELIKLASS------------ 41 usage_01554.pdb 1 KEALKRRWRWQQTQQN-K-ES----GLV-YTEDEWQKEWNELIKLASSEP------REPV 47 usage_01555.pdb 1 -RNFKFRWQLESLKSQ----EFVETGLCY-DTRNWNDEWDNLIKMASTDTP----GL--Q 48 usage_01556.pdb 1 TRNFKFRWQLESLKSQ-----------------NWNDEWDNLIKMASTDT------P--Q 35 usage_01666.pdb 1 -RNFKFRWQLESLKSQ-----------------NWNDEWDNLIKMASTDT------L--Q 34 usage_01667.pdb 1 -RNFKFRWQLESLKS------------------NWNDEWDNLIKMASTD-------L--Q 32 usage_01668.pdb 1 -RNFKFRWQLESLKSQ-E--F------------NWNDEWDNLIKMASTDT---------Q 35 usage_01712.pdb 1 -RNFKFRWQLESLKS------------------NWNDEWDNLIKMASTDTP-----L--Q 34 usage_01713.pdb 1 TRNFKFRWQLESLKS------------------NWNDEWDNLIKMASTDTP----GL--Q 36 K RW W EW LIK AS usage_00400.pdb 40 YNSLEEIHIFVLCNILR 56 usage_00401.pdb 42 YNSLEEIHIFVLCNILR 58 usage_00538.pdb 32 YNSLEEIHIFVLCNILR 48 usage_00539.pdb 32 YNSLEEIHIFVLCNILR 48 usage_00540.pdb 31 YNSLEEIHIFVLCNILR 47 usage_00864.pdb 35 YNSLEEIHIFVLCNILR 51 usage_00865.pdb 36 YNSLEEIHIFVLCNILR 52 usage_00866.pdb 40 YNSLEEIHIFVLCNILR 56 usage_00867.pdb 41 YNSLEEIHIFVLCNILR 57 usage_01118.pdb 36 YNSLEEIHIFVLCNILR 52 usage_01119.pdb 34 YNSLEEIHIFVLCNILR 50 usage_01120.pdb 38 YNSLEEIHIFVLCNILR 54 usage_01121.pdb 38 YNSLEEIHIFVLCNILR 54 usage_01389.pdb 49 YNSLEEIHIFVLCNILR 65 usage_01390.pdb 49 YNSLEEIHIFVLCNILR 65 usage_01391.pdb 49 YNSLEEIHIFVLCNILR 65 usage_01553.pdb 42 YESLEEFHVFVLAHVLR 58 usage_01554.pdb 48 YESLEEFHVFVLAHVLR 64 usage_01555.pdb 49 YNSLEEIHIFVLCNILR 65 usage_01556.pdb 36 YNSLEEIHIFVLCNILR 52 usage_01666.pdb 35 YNSLEEIHIFVLCNILR 51 usage_01667.pdb 33 YNSLEEIHIFVLCNILR 49 usage_01668.pdb 36 YNSLEEIHIFVLCNILR 52 usage_01712.pdb 35 YNSLEEIHIFVLCNILR 51 usage_01713.pdb 37 YNSLEEIHIFVLCNILR 53 Y SLEE H FVL LR #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################