################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:47:47 2021 # Report_file: c_0259_8.html ################################################################################################ #==================================== # Aligned_structures: 8 # 1: usage_00004.pdb # 2: usage_00005.pdb # 3: usage_00042.pdb # 4: usage_00106.pdb # 5: usage_00121.pdb # 6: usage_00172.pdb # 7: usage_00173.pdb # 8: usage_00215.pdb # # Length: 128 # Identity: 20/128 ( 15.6%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 63/128 ( 49.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 19/128 ( 14.8%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00004.pdb 1 --GDILKKHLRWLKALP--------RVTPFYAVKCNDSKAIVKTLAATGTGFDCASKTEI 50 usage_00005.pdb 1 --GDILKKHLRWLKALP--------RVTPFYAVKCNDSKAIVKTLAATGTGFDCASKTEI 50 usage_00042.pdb 1 -LGDILKKHLRWLKALP--------RVTPFYAV-CNDSKAIVKTLAATGTGFDCASKTEI 50 usage_00106.pdb 1 --GDILKKHLRWLKALP--------RVTPFYAVKCNDSKAIVKTLAATGTGFDCASKTEI 50 usage_00121.pdb 1 --GDILKKHLRWLKALP--------RVTPFYAVKCNDSKAIVKTLAATGTGFDCASKTEI 50 usage_00172.pdb 1 --GKIVKKHSQWQTVVA--------QIKPFYTVKCNSTPAVLEILAALGTGFACSSKNEM 50 usage_00173.pdb 1 --GKIVKKHSQWQTVVA--------QIKPFYTVKCNSTPAVLEILAALGTGFACSSKNEM 50 usage_00215.pdb 1 SEEQIKINYNRYIEAFKRWEEETGKEFIVAYAYKANANLAITRLLAKLGCGADVVSGGEL 60 g I kkh w pfY v cN A LAa GtGf c Sk E usage_00004.pdb 51 QLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAH----PKAKL 106 usage_00005.pdb 51 QLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAH----PKAKL 106 usage_00042.pdb 51 QLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAH----PKAKL 106 usage_00106.pdb 51 QLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAH----PKAKL 106 usage_00121.pdb 51 QLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAH----PKAKL 106 usage_00172.pdb 51 ALVQELGVSPENIIFTSPCKQVSQIKYAAKVGVNIMTCDNEIELKKIARNH----PNAKV 106 usage_00173.pdb 51 ALVQELGVSPENIIFTSPCKQVSQIKYAAKVGVNIMTCDNEIELKKIARNH----PNAKV 106 usage_00215.pdb 61 YIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIRAFNVDSISELILINETAKELGETANV 120 lvq lgV pe Ii pCKqvsqIkyaa gv mt D e EL k ar h p Ak usage_00004.pdb 107 VLRI---- 110 usage_00005.pdb 107 VLRI---- 110 usage_00042.pdb 107 VLRI---- 110 usage_00106.pdb 107 VLRIATDD 114 usage_00121.pdb 107 VLRI---- 110 usage_00172.pdb 107 LLHIATE- 113 usage_00173.pdb 107 LLHI---- 110 usage_00215.pdb 121 AFRI---- 124 l I #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################