################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:09:58 2021 # Report_file: c_1396_11.html ################################################################################################ #==================================== # Aligned_structures: 10 # 1: usage_00252.pdb # 2: usage_00326.pdb # 3: usage_00565.pdb # 4: usage_00567.pdb # 5: usage_00568.pdb # 6: usage_00779.pdb # 7: usage_01002.pdb # 8: usage_01003.pdb # 9: usage_01300.pdb # 10: usage_01771.pdb # # Length: 110 # Identity: 82/110 ( 74.5%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 82/110 ( 74.5%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 25/110 ( 22.7%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00252.pdb 1 -PWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFT 59 usage_00326.pdb 1 --WQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFT 58 usage_00565.pdb 1 --WQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFT 58 usage_00567.pdb 1 --WQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFT 58 usage_00568.pdb 1 ---------------------INFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFT 39 usage_00779.pdb 1 EPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFT 60 usage_01002.pdb 1 --WQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFT 58 usage_01003.pdb 1 ---------------------INFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFT 39 usage_01300.pdb 1 -PWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFT 59 usage_01771.pdb 1 -PWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFT 59 INFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT usage_00252.pdb 60 TTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCK- 108 usage_00326.pdb 59 TTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCK- 107 usage_00565.pdb 59 STLYTSLHGYFVFGPTGCNLQGFFATLGGEIALWSLVVLAIERYVVVCK- 107 usage_00567.pdb 59 STLYTSLHGYFVFGPTGCNLQGFFATLGGEIALWSLVVLAIERYVVVCK- 107 usage_00568.pdb 40 STLYTSLHGYFVFGPTGCNLQGFFATLGGEIALWSLVVLAIERYVVVCKP 89 usage_00779.pdb 61 TTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVV---- 106 usage_01002.pdb 59 STLYTSLHGYFVFGPTGCNLQGFFATLGGEIALWSLVVLAIERYVVVCK- 107 usage_01003.pdb 40 STLYTSLHGYFVFGPTGCNLQGFFATLGGEIALWSLVVLAIERYVVVCKP 89 usage_01300.pdb 60 TTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCK- 108 usage_01771.pdb 60 TTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVV--- 106 TLYTSLHGYFVFGPTGCNL GFFATLGGEIALWSLVVLAIERYVV #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################