################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:13:32 2021 # Report_file: c_0471_18.html ################################################################################################ #==================================== # Aligned_structures: 14 # 1: usage_00032.pdb # 2: usage_00033.pdb # 3: usage_00034.pdb # 4: usage_00137.pdb # 5: usage_00138.pdb # 6: usage_00139.pdb # 7: usage_00143.pdb # 8: usage_00157.pdb # 9: usage_00165.pdb # 10: usage_00166.pdb # 11: usage_00167.pdb # 12: usage_00179.pdb # 13: usage_00180.pdb # 14: usage_00181.pdb # # Length: 134 # Identity: 16/134 ( 11.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 24/134 ( 17.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 53/134 ( 39.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00032.pdb 1 KGILLYGPPGTGKTLLAKAVATETNATFIRVVGSEL-VKKFIGEGAS-------LVKDIF 52 usage_00033.pdb 1 KGILLYGPPGTGKTLLAKAVATETNATFIRVVGSEL-VKKFIGEGAS-------LVKDIF 52 usage_00034.pdb 1 KGILLYGPPGTGKTLLAKAVATETNATFIRVVGSEL-VKKFIGEGAS-------LVKDIF 52 usage_00137.pdb 1 KGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL-VQKYVGEGAR-------MVRELF 52 usage_00138.pdb 1 -GVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAEL-VQKYIGEGSR-------MVRELF 51 usage_00139.pdb 1 KGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQL-VQMYIGEGAK-------LVRDAF 52 usage_00143.pdb 1 KGILLFGPPGTGKTLIGKCIASQSGATFFSISASSL-T-----EGEK-------MVRALF 47 usage_00157.pdb 1 RGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEF-VQKYLGEGPR-------MVRDVF 52 usage_00165.pdb 1 KGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL-VQKYVGEGAR-------MVRELF 52 usage_00166.pdb 1 -GVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAEL-VQKYIGEGSR-------MVRELF 51 usage_00167.pdb 1 KGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQL-VQMYIGEGAK-------LVRDAF 52 usage_00179.pdb 1 KGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL-VQKYVGEGAR-------MVRELF 52 usage_00180.pdb 1 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV--------QKFIGEGARMVRELF 52 usage_00181.pdb 1 KGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSI-VDKYIGESAR-------LIREMF 52 G yGPPGtGKTl a a A F v F usage_00032.pdb 53 KLAKEKAPSIIFIDEIDAIAAKRTDALTG----------GDREVQRTLMQLLAEMDGFD- 101 usage_00033.pdb 53 KLAKEKAPSIIFIDEIDAIAAKRTDALTG----------GDREVQRTLMQLLAEMDGFD- 101 usage_00034.pdb 53 KLAKEKAPSIIFIDEIDAIAAKRTDALTG----------GDREVQRTLMQLLAEMDGFD- 101 usage_00137.pdb 53 EMARTKKACIIFFDEIDAVGGARFDDGAG----------GDNEVQRTMLELITQLDGFD- 101 usage_00138.pdb 52 VMAREHAPSIIFMDEI-------------DSIGSTRVEGSGGGDSEVQRTMLELLNQLDG 98 usage_00139.pdb 53 ALAKEKAPTIIFIDELDAIGTKRFDSEKS----------GDREVQRTMLELLNQLDGFS- 101 usage_00143.pdb 48 AVARCQQPAVIFIDEIDSLLS----------------------SRRIKTEFLVQLDGA-- 83 usage_00157.pdb 53 RLAKENAPAIIFIDEIDAIATKRF---DA----QTG---ADREVQRILLELLNQMDGFD- 101 usage_00165.pdb 53 EMARTKKACIIFFDEIDAVGGARFDDGAG----------GDNEVQRTMLELITQLDGFD- 101 usage_00166.pdb 52 VMAREHAPSIIFMDEI-------------DSIGSTRVEGSGGGDSEVQRTMLELLNQLDG 98 usage_00167.pdb 53 ALAKEKAPTIIFIDELDAIGTKRFDSEKS----------GDREVQRTMLELLNQLDGFS- 101 usage_00179.pdb 53 EMARTKKACIIFFDEIDAVGGARFDDGAG----------GDNEVQRTMLELITQLDGFD- 101 usage_00180.pdb 53 VMAREHAPSIIFMDE--------------------------SEVQRTMLELLNQLDGF-- 84 usage_00181.pdb 53 NYARDHQPCIIFMDEIDAIGGRRFSEGTS----------ADREIQRTLMELLNQMDGF-- 100 A iIF DE usage_00032.pdb 102 --ARGDVKIIGATN 113 usage_00033.pdb 102 --ARGDVKIIGATN 113 usage_00034.pdb 102 --ARGDVKIIGATN 113 usage_00137.pdb 102 --PRGNIKVMFATN 113 usage_00138.pdb 99 FETSKNIKIIMAT- 111 usage_00139.pdb 102 --SDDRVKVLA--- 110 usage_00143.pdb 84 ---EDRILVVGATN 94 usage_00157.pdb 102 --QNVNVKVIMATN 113 usage_00165.pdb 102 --PRGNIKVMFATN 113 usage_00166.pdb 99 FETSKNIKIIMAT- 111 usage_00167.pdb 102 --SDDRVKVLA--- 110 usage_00179.pdb 102 --PRGNIKVMFATN 113 usage_00180.pdb 85 -EATKNIKVIMATN 97 usage_00181.pdb 101 -DTLHRVKMIMATN 113 k #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################