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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Thu Jan 21 01:00:32 2021
# Report_file: c_0279_11.html
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#====================================
# Aligned_structures: 13
#   1: usage_00076.pdb
#   2: usage_00077.pdb
#   3: usage_00081.pdb
#   4: usage_00085.pdb
#   5: usage_00170.pdb
#   6: usage_00264.pdb
#   7: usage_00326.pdb
#   8: usage_00327.pdb
#   9: usage_00331.pdb
#  10: usage_00332.pdb
#  11: usage_00333.pdb
#  12: usage_00334.pdb
#  13: usage_00341.pdb
#
# Length:        121
# Identity:       33/121 ( 27.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     39/121 ( 32.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           16/121 ( 13.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00076.pdb         1  QIVAVEFDTYFAHSYDPWDPNYRHIGIDVNG-IESIKTVQWDWINGGVAFATITYLAPNK   59
usage_00077.pdb         1  QIVAVEFDTYFAHSYDPWDPNYRHIGIDVNG-IESIKTVQWDWINGGVAFATITYLAPNK   59
usage_00081.pdb         1  ----VEFDTFS----NTWDPSARHIGINVNS-IESMKYVKWGWENGKVANVYISYEASTK   51
usage_00085.pdb         1  ----VEFDTFS----NTWDPSARHIGINVNS-IESMKYVKWGWENGKVANVYISYEASTK   51
usage_00170.pdb         1  ----VEFDTFY---SNTWDPNYPHIGIDVNSI-RSVKTVKWDRRDGQSLNVLVTFNPSTR   52
usage_00264.pdb         1  QVLAVEFDTFFAQNSNTWDPNYQHIGIDVNS-IRSSKVVRWERREGKTLNVLVTYNPSTR   59
usage_00326.pdb         1  ----VEFDTFS----NTWDPSARHIGINVNS-IESMKYVKWGWENGKVANVYISYEASTK   51
usage_00327.pdb         1  ----VEFDTFS----NTWDPSARHIGINVNS-IESMKYVKWGWENGKVANVYISYEASTK   51
usage_00331.pdb         1  HIVAVEFDTFK----NSWDPEGTHIGINVNS-IVSRKTISWDLENDEVANVVISYQASTK   55
usage_00332.pdb         1  HIVAVEFDTFK----NSWDPEGTHIGINVNS-IVSRKTISWDLENDEVANVVISYQASTK   55
usage_00333.pdb         1  HIVAVEFDTFK----NSWDPEGTHIGINVNS-IVSRKTISWDLENDEVANVVISYQASTK   55
usage_00334.pdb         1  HIVAVEFDTFK----NSWDPEGTHIGINVNS-IVSRKTISWDLENDEVANVVISYQASTK   55
usage_00341.pdb         1  ----VEFDTFS----NTWDPSARHIGINVNS-IESMKYVKWGWENGKVANVYISYEASTK   51
                               VEFDT        WDP   HIGI VN    S K   W             y     

usage_00076.pdb        60  TLIASLVYPSNQTTFSVAASVDLKEILPEWVRVGFSAATGYPTEVETHDVL-SWSFTSTL  118
usage_00077.pdb        60  TLIASLVYPSNQTTFSVAASVDLKEILPEWVRVGFSAATGYPTEVETHDVL-SWSFTSTL  118
usage_00081.pdb        52  TLTASLTYPSNATSYIVSANVDLKSALPEWVRVGFSATSGLSRDHVETHDVLDWSFTSTL  111
usage_00085.pdb        52  TLTASLTYPSNATSYIVSANVDLKSALPEWVRVGFSATSGLSRDHVETHDVLDWSFTSTL  111
usage_00170.pdb        53  NLDVVATYS-DGTRYEVSYEVDVRSVLPEWVRVGFSAAS-GE--QYQTHTLESWSFTSTL  108
usage_00264.pdb        60  TIDVVATYP-DGQRYQLSHVVDLTTILPEWVRVGFSAAS-GE--QFQTHNLESWSFTSTL  115
usage_00326.pdb        52  TLTASLTYPSNATSYIVSANVDLKSALPEWVRVGFSATSGLSRDHVETHDVLDWSFTSTL  111
usage_00327.pdb        52  TLTASLTYPSNATSYIVSANVDLKSALPEWVRVGFSATSGLSRDHVETHDVLDWSFTSTL  111
usage_00331.pdb        56  TLTASLVYPSSSTSYILNDVVDLKQILPEYVRVGFTAASGLSKDHVETHDVLAWTFDSDL  115
usage_00332.pdb        56  TLTASLVYPSSSTSYILNDVVDLKQILPEYVRVGFTAASGLSKDHVETHDVLAWTFDSDL  115
usage_00333.pdb        56  TLTASLVYPSSSTSYILNDVVDLKQILPEYVRVGFTAASGLSKDHVETHDVLAWTFDSDL  115
usage_00334.pdb        56  TLTASLVYPSSSTSYILNDVVDLKQILPEYVRVGFTAASGLSKDHVETHDVLAWTFDSDL  115
usage_00341.pdb        52  TLTASLTYPSNATSYIVSANVDLKSALPEWVRVGFSATSGLSRDHVETHDVLDWSFTSTL  111
                           tl     Yp   t       VDl   LPE VRVGF A                W F S L

usage_00076.pdb            -     
usage_00077.pdb            -     
usage_00081.pdb       112  Q  112
usage_00085.pdb       112  Q  112
usage_00170.pdb            -     
usage_00264.pdb            -     
usage_00326.pdb       112  Q  112
usage_00327.pdb       112  Q  112
usage_00331.pdb       116  P  116
usage_00332.pdb       116  P  116
usage_00333.pdb       116  P  116
usage_00334.pdb       116  P  116
usage_00341.pdb       112  Q  112
                            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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