################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:03:13 2021 # Report_file: c_0028_19.html ################################################################################################ #==================================== # Aligned_structures: 4 # 1: usage_00025.pdb # 2: usage_00126.pdb # 3: usage_00147.pdb # 4: usage_00148.pdb # # Length: 232 # Identity: 84/232 ( 36.2%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 84/232 ( 36.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 93/232 ( 40.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00025.pdb 1 -HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW 59 usage_00126.pdb 1 ----------------------------------------TWKPTLVILRINRAARCVRW 20 usage_00147.pdb 1 ARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVY-----TWKQTLVLLRLNRAATFVRW 55 usage_00148.pdb 1 ARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVY-----TWKQTLVLLRLNRAATFVRW 55 TWK TLV LR NRAA VRW usage_00025.pdb 60 APNEKKFAVGSGSRVISICYFEQEND----WWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 115 usage_00126.pdb 21 APNEKKFAVGSGSRVISICYFE----QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 76 usage_00147.pdb 56 SPNEDKFAVGSGARVISVCYF---------WWVSKHLKRPLRSTILSLDWHPNNVLLAAG 106 usage_00148.pdb 56 SPNEDKFAVGSGARVISVCYFE--------WWVSKHLKRPLRSTILSLDWHPNNVLLAAG 107 PNE KFAVGSG RVIS CYF WWV KH K P RST LSLDWHPN VLLAAG usage_00025.pdb 116 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV 175 usage_00126.pdb 77 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV 136 usage_00147.pdb 107 CADRKAYVLSAYVRDVD-KPEASVWGSRLPFNTVCAEYPS-GGWVHAVGFSPSGNALAYA 164 usage_00148.pdb 108 CADRKAYVLSAYVRDVD-KPEASVWGSRLPFNTVCAEYPS-GGWVHAVGFSPSGNALAYA 165 D K SAY V P WGS PF E S GWVH V FS G A usage_00025.pdb 176 SHDSTVCLAD------------------------------------------ 185 usage_00126.pdb 137 SHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFT- 187 usage_00147.pdb 165 GHDSSVTIAYPS---------------------------------------A 177 usage_00148.pdb 166 GHDSSVTIAYPS---------------------------------------A 178 HDS V A #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################