################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:05:24 2021 # Report_file: c_0404_32.html ################################################################################################ #==================================== # Aligned_structures: 4 # 1: usage_00118.pdb # 2: usage_00184.pdb # 3: usage_00335.pdb # 4: usage_00336.pdb # # Length: 118 # Identity: 5/118 ( 4.2%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 15/118 ( 12.7%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 56/118 ( 47.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00118.pdb 1 APTVTP-----------IGDQSSEVYSPISPI---KIATQDNSGNAV-TNTVTG------ 39 usage_00184.pdb 1 APVVTY-----------SDI-V-ND-------LIIQG-TAE------AKSQLIITDSEGN 33 usage_00335.pdb 1 VPVISLSPDSDSGTVGDNIT-R-D---KQPTF---IIGNLESDV--V-VVQVDIN----- 44 usage_00336.pdb 1 VPVISLSPDSDSGTVGDNIT-R-D---KQPTF---IIGNLESDV--V-VVQVDIN----- 44 Pv i e qv i usage_00118.pdb 40 LPSGLTFDST----NNTISG--T--PTNIGTSTISIVSTDASGNKTTTTFKYEV-T-- 86 usage_00184.pdb 34 T--YTLTVPD----NGKWSAIPY--PS---EGKFTITSVDAIGNRSDDVPLDIK--E- 77 usage_00335.pdb 45 G--TVYNAEKNADGVWFFTP--GTPL-ADGSYTISVIASDAAGNQKNSLPITVTID-S 96 usage_00336.pdb 45 G--TVYNAEKNADGVWFFTP--GTPL-ADGSYTISVIASDAAGNQKNSLPITVTID-S 96 tis DA GN p #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################