################################################################################################
# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Thu Jan 21 11:27:21 2021
# Report_file: c_1116_20.html
################################################################################################
#====================================
# Aligned_structures: 87
#   1: usage_00001.pdb
#   2: usage_00002.pdb
#   3: usage_00003.pdb
#   4: usage_00004.pdb
#   5: usage_00005.pdb
#   6: usage_00006.pdb
#   7: usage_00007.pdb
#   8: usage_00008.pdb
#   9: usage_00009.pdb
#  10: usage_00010.pdb
#  11: usage_00011.pdb
#  12: usage_00012.pdb
#  13: usage_00013.pdb
#  14: usage_00014.pdb
#  15: usage_00020.pdb
#  16: usage_00021.pdb
#  17: usage_00025.pdb
#  18: usage_00026.pdb
#  19: usage_00029.pdb
#  20: usage_00030.pdb
#  21: usage_00036.pdb
#  22: usage_00037.pdb
#  23: usage_00038.pdb
#  24: usage_00039.pdb
#  25: usage_00060.pdb
#  26: usage_00063.pdb
#  27: usage_00064.pdb
#  28: usage_00068.pdb
#  29: usage_00069.pdb
#  30: usage_00070.pdb
#  31: usage_00071.pdb
#  32: usage_00131.pdb
#  33: usage_00141.pdb
#  34: usage_00142.pdb
#  35: usage_00163.pdb
#  36: usage_00164.pdb
#  37: usage_00165.pdb
#  38: usage_00166.pdb
#  39: usage_00167.pdb
#  40: usage_00168.pdb
#  41: usage_00192.pdb
#  42: usage_00193.pdb
#  43: usage_00194.pdb
#  44: usage_00195.pdb
#  45: usage_00216.pdb
#  46: usage_00217.pdb
#  47: usage_00218.pdb
#  48: usage_00219.pdb
#  49: usage_00225.pdb
#  50: usage_00226.pdb
#  51: usage_00452.pdb
#  52: usage_00453.pdb
#  53: usage_00455.pdb
#  54: usage_00456.pdb
#  55: usage_00457.pdb
#  56: usage_00458.pdb
#  57: usage_00478.pdb
#  58: usage_00479.pdb
#  59: usage_00495.pdb
#  60: usage_00496.pdb
#  61: usage_00576.pdb
#  62: usage_00577.pdb
#  63: usage_00578.pdb
#  64: usage_00579.pdb
#  65: usage_00580.pdb
#  66: usage_00581.pdb
#  67: usage_00582.pdb
#  68: usage_00583.pdb
#  69: usage_00593.pdb
#  70: usage_00594.pdb
#  71: usage_00605.pdb
#  72: usage_00606.pdb
#  73: usage_00742.pdb
#  74: usage_00743.pdb
#  75: usage_00756.pdb
#  76: usage_00757.pdb
#  77: usage_00766.pdb
#  78: usage_00767.pdb
#  79: usage_00909.pdb
#  80: usage_00910.pdb
#  81: usage_00987.pdb
#  82: usage_01040.pdb
#  83: usage_01041.pdb
#  84: usage_01044.pdb
#  85: usage_01045.pdb
#  86: usage_01046.pdb
#  87: usage_01110.pdb
#
# Length:         71
# Identity:       64/ 71 ( 90.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     64/ 71 ( 90.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            6/ 71 (  8.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00001.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00002.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00003.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00004.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00005.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00006.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00007.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00008.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00009.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00010.pdb         1  -LEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   59
usage_00011.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00012.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00013.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00014.pdb         1  -LEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   59
usage_00020.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00021.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00025.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00026.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00029.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00030.pdb         1  -LEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   59
usage_00036.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00037.pdb         1  -LEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   59
usage_00038.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00039.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00060.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00063.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00064.pdb         1  -LEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   59
usage_00068.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00069.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00070.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00071.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00131.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00141.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00142.pdb         1  -LEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   59
usage_00163.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00164.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00165.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00166.pdb         1  -LEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   59
usage_00167.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00168.pdb         1  -LEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   59
usage_00192.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00193.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00194.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00195.pdb         1  ------PHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   54
usage_00216.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00217.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00218.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00219.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00225.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00226.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00452.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00453.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00455.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00456.pdb         1  -----LPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   55
usage_00457.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00458.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00478.pdb         1  -LEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   59
usage_00479.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00495.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00496.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00576.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00577.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00578.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00579.pdb         1  -LEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   59
usage_00580.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00581.pdb         1  -LEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   59
usage_00582.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00583.pdb         1  -LEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   59
usage_00593.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00594.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00605.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00606.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00742.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00743.pdb         1  -LEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   59
usage_00756.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00757.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00766.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_00767.pdb         1  -LEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   59
usage_00909.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAH   60
usage_00910.pdb         1  -LEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAH   59
usage_00987.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_01040.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_01041.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_01044.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_01045.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_01046.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
usage_01110.pdb         1  PLEELLPHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAW   60
                                 PHAIEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMA 

usage_00001.pdb        61  RNAPRCIGRIQ   71
usage_00002.pdb        61  RNAPRCIGRIQ   71
usage_00003.pdb        61  RNAPRCIGRIQ   71
usage_00004.pdb        61  RNAPRCIGRIQ   71
usage_00005.pdb        61  RNAPRCIGRIQ   71
usage_00006.pdb        61  RNAPRCIGRIQ   71
usage_00007.pdb        61  RNAPRCIGRIQ   71
usage_00008.pdb        61  RNAPRCIGRIQ   71
usage_00009.pdb        61  RNAPRCIGRIQ   71
usage_00010.pdb        60  RNAPRCIGRIQ   70
usage_00011.pdb        61  RNAPRCIGRIQ   71
usage_00012.pdb        61  RNAPRCIGRIQ   71
usage_00013.pdb        61  RNAPRCIGRIQ   71
usage_00014.pdb        60  RNAPRCIGRIQ   70
usage_00020.pdb        61  RNAPRCIGRIQ   71
usage_00021.pdb        61  RNAPRCIGRIQ   71
usage_00025.pdb        61  RNAPRCIGRIQ   71
usage_00026.pdb        61  RNAPRCIGRIQ   71
usage_00029.pdb        61  RNAPRCIGRIQ   71
usage_00030.pdb        60  RNAPRCIGRIQ   70
usage_00036.pdb        61  RNAPRCIGRIQ   71
usage_00037.pdb        60  RNAPRCIGRIQ   70
usage_00038.pdb        61  RNAPRCIGRIQ   71
usage_00039.pdb        61  RNAPRCIGRIQ   71
usage_00060.pdb        61  RNAPRCIGRIQ   71
usage_00063.pdb        61  RNAPRCIGRIQ   71
usage_00064.pdb        60  RNAPRCIGRIQ   70
usage_00068.pdb        61  RNAPRCIGRIQ   71
usage_00069.pdb        61  RNAPRCIGRIQ   71
usage_00070.pdb        61  RNAPRCIGRIQ   71
usage_00071.pdb        61  RNAPRCIGRIQ   71
usage_00131.pdb        61  RNAPRCIGRIQ   71
usage_00141.pdb        61  RNAPRCIGRIQ   71
usage_00142.pdb        60  RNAPRCIGRIQ   70
usage_00163.pdb        61  RNAPRCIGRIQ   71
usage_00164.pdb        61  RNAPRCIGRIQ   71
usage_00165.pdb        61  RNAPRCIGRIQ   71
usage_00166.pdb        60  RNAPRCIGRIQ   70
usage_00167.pdb        61  RNAPRCIGRIQ   71
usage_00168.pdb        60  RNAPRCIGRIQ   70
usage_00192.pdb        61  RNAPRCIGRIQ   71
usage_00193.pdb        61  RNAPRCIGRIQ   71
usage_00194.pdb        61  RNAPRCIGRIQ   71
usage_00195.pdb        55  RNAPRCIGRIQ   65
usage_00216.pdb        61  RNAPRCIGRIQ   71
usage_00217.pdb        61  RNAPRCIGRIQ   71
usage_00218.pdb        61  RNAPRCIGRIQ   71
usage_00219.pdb        61  RNAPRCIGRIQ   71
usage_00225.pdb        61  RNAPRCIGRIQ   71
usage_00226.pdb        61  RNAPRCIGRIQ   71
usage_00452.pdb        61  RNAPRCIGRIQ   71
usage_00453.pdb        61  RNAPRCIGRIQ   71
usage_00455.pdb        61  RNAPRCIGRIQ   71
usage_00456.pdb        56  RNAPRCIGRIQ   66
usage_00457.pdb        61  RNAPRCIGRIQ   71
usage_00458.pdb        61  RNAPRCIGRIQ   71
usage_00478.pdb        60  RNAPRCIGRIQ   70
usage_00479.pdb        61  RNAPRCIGRIQ   71
usage_00495.pdb        61  RNAPRCIGRIQ   71
usage_00496.pdb        61  RNAPRCIGRIQ   71
usage_00576.pdb        61  RNAPRCIGRIQ   71
usage_00577.pdb        61  RNAPRCIGRIQ   71
usage_00578.pdb        61  RNAPRCIGRIQ   71
usage_00579.pdb        60  RNAPRCIGRIQ   70
usage_00580.pdb        61  RNAPRCIGRIQ   71
usage_00581.pdb        60  RNAPRCIGRIQ   70
usage_00582.pdb        61  RNAPRCIGRIQ   71
usage_00583.pdb        60  RNAPRCIGRIQ   70
usage_00593.pdb        61  RNAPRCIGRIQ   71
usage_00594.pdb        61  RNAPRCIGRIQ   71
usage_00605.pdb        61  RNAPRCIGRIQ   71
usage_00606.pdb        61  RNAPRCIGRIQ   71
usage_00742.pdb        61  RNAPRCIGRIQ   71
usage_00743.pdb        60  RNAPRCIGRIQ   70
usage_00756.pdb        61  RNAPRCIGRIQ   71
usage_00757.pdb        61  RNAPRCIGRIQ   71
usage_00766.pdb        61  RNAPRCIGRIQ   71
usage_00767.pdb        60  RNAPRCIGRIQ   70
usage_00909.pdb        61  RNAPRCIGRIQ   71
usage_00910.pdb        60  RNAPRCIGRIQ   70
usage_00987.pdb        61  RNAPRCIGRIQ   71
usage_01040.pdb        61  RNAPRCIGRIQ   71
usage_01041.pdb        61  RNAPRCIGRIQ   71
usage_01044.pdb        61  RNAPRCIGRIQ   71
usage_01045.pdb        61  RNAPRCIGRIQ   71
usage_01046.pdb        61  RNAPRCIGRIQ   71
usage_01110.pdb        61  RNAPRCIGRIQ   71
                           RNAPRCIGRIQ


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################