################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 23:08:14 2021 # Report_file: c_1409_199.html ################################################################################################ #==================================== # Aligned_structures: 9 # 1: usage_00271.pdb # 2: usage_00296.pdb # 3: usage_01122.pdb # 4: usage_01123.pdb # 5: usage_01520.pdb # 6: usage_01536.pdb # 7: usage_01546.pdb # 8: usage_01642.pdb # 9: usage_01743.pdb # # Length: 82 # Identity: 0/ 82 ( 0.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 0/ 82 ( 0.0%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 72/ 82 ( 87.8%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00271.pdb 1 -NIISTF---------QNLYR----------C---PG---------DDKSKIVRVL---N 25 usage_00296.pdb 1 D-SKEVL---------VHVKNLE-K--N---K-S------------NDAAVLEILH---V 28 usage_01122.pdb 1 --PKSTI---------QEQLDKIKN------L-S-SK-E-------LAKNKIFKFL---S 30 usage_01123.pdb 1 --PKSTI---------QEQLDKIKN------L---SSKE-------LAKNKIFKFL---S 30 usage_01520.pdb 1 ----------------------------------TRV-S-------FSQWLCRLHN---E 15 usage_01536.pdb 1 --G----PE---IFL--GFLKSYIQMFAFKS----------VT-TEEWKKFLYSYFKDK- 37 usage_01546.pdb 1 -N-TDIAKELCLPPVK---------------------LHC------SMLAEDAIKA---A 28 usage_01642.pdb 1 --SASQVKD---IFR--FIDN----------------DQSGY-LDGDELKYFLQKF---Q 33 usage_01743.pdb 1 ------E---------EILKEHYKE------LSD---QP-------FFKNLVAYIS---K 26 usage_00271.pdb 26 LWQKNN---------------- 31 usage_00296.pdb 29 LDKEF----------------- 33 usage_01122.pdb 31 EYNKNN---------------- 36 usage_01123.pdb 31 EYNKNN---------------- 36 usage_01520.pdb 16 VNRKLG---KPDFDCSRVDERW 34 usage_01536.pdb ---------------------- usage_01546.pdb 29 -LADYKLKQ------------- 36 usage_01642.pdb ---------------------- usage_01743.pdb 27 G--------------------- 27 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################