################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:33:10 2021 # Report_file: c_0286_4.html ################################################################################################ #==================================== # Aligned_structures: 16 # 1: usage_00022.pdb # 2: usage_00023.pdb # 3: usage_00026.pdb # 4: usage_00027.pdb # 5: usage_00062.pdb # 6: usage_00079.pdb # 7: usage_00080.pdb # 8: usage_00081.pdb # 9: usage_00082.pdb # 10: usage_00083.pdb # 11: usage_00084.pdb # 12: usage_00085.pdb # 13: usage_00086.pdb # 14: usage_00087.pdb # 15: usage_00105.pdb # 16: usage_00106.pdb # # Length: 96 # Identity: 16/ 96 ( 16.7%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 30/ 96 ( 31.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 30/ 96 ( 31.2%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00022.pdb 1 ---PMTVDFIRLGSYCNDQ-ST-GDIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLS 55 usage_00023.pdb 1 RSIPMTVDFIRLK-SYC-N-QS-GDIKV-IGDDLSTLTGKNVLIVEDIIDTGKTMQTLLS 55 usage_00026.pdb 1 -----FEHYVRLK-SYQ------GQLTV-LSDDLSIFRDKHVLIVEDIVDTGFTLTEFGE 47 usage_00027.pdb 1 -----FEHYVRLK------------QLTVLSDDLSIFRDKHVLIVEDIVDTGFTLTEFGE 43 usage_00062.pdb 1 -----VIRYIDIK-F------S--KPVIRSV-YTDSLEGKKVLVVDDVADTGETLEAVSN 45 usage_00079.pdb 1 ---PMTVDFIRLK------------IKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLS 45 usage_00080.pdb 1 ---PMTVDFIRLK-SD---------IKVI---DLSTLTGKNVLIVEDIIDTGKTMQTLLS 44 usage_00081.pdb 1 -------DFIRLK--S-----G--DIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLS 44 usage_00082.pdb 1 ---PMTVDFIRLK-SY-----G--DIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLS 49 usage_00083.pdb 1 ---PMTVDFIRLK------------IKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLS 45 usage_00084.pdb 1 RSIPMTVDFIRLK--------------VIG--GDSTLTGKNVLIVEDIIDTGKTMQTLLS 44 usage_00085.pdb 1 ---PMTVDFIRLK--------------------LSTLTGKNVLIVEDIIDTGKTMQTLLS 37 usage_00086.pdb 1 ---PMTVDFIRLK-SY--------DIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLS 48 usage_00087.pdb 1 RSIPMTVDFIRLK------------IKVI----LSTLTGKNVLIVEDIIDTGKTMQTLLS 44 usage_00105.pdb 1 ---PMTVDFIRLK-SY---------IKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLS 47 usage_00106.pdb 1 RSIPMTVDFIRLK-SYC-NDQSTGDIKV-IGDDLSTLTGKNVLIVEDIIDTGKTMQTLLS 57 rlk s K VLiVeDi DTG T usage_00022.pdb 56 LVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIP 91 usage_00023.pdb 56 LVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIP 91 usage_00026.pdb 48 RLKAVGPKSMRIATLVEKRTDRSNSLKGDFVGFSIE 83 usage_00027.pdb 44 RLKAVGPKSMRIATLVEKRTDN--SLKGDFVGFSIE 77 usage_00062.pdb 46 VITMFNPAKVMTAALYLKPWS---KRIPDFYYKQID 78 usage_00079.pdb 46 LVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIP 81 usage_00080.pdb 45 LVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIP 80 usage_00081.pdb 45 LVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIP 80 usage_00082.pdb 50 LVRQYNPKMVKVASLLVKRTP---GYKPDFVGFEIP 82 usage_00083.pdb 46 LVRQYNPKMVKVASLLVKRTP---RYKPDFVGFEIP 78 usage_00084.pdb 45 LVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIP 80 usage_00085.pdb 38 LVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIP 73 usage_00086.pdb 49 LVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIP 84 usage_00087.pdb 45 LVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIP 80 usage_00105.pdb 48 LVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIP 83 usage_00106.pdb 58 LVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIP 93 Pk A L Krt k DFvgf I #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################