################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:28:38 2021 # Report_file: c_0012_3.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00021.pdb # 2: usage_00022.pdb # 3: usage_00023.pdb # 4: usage_00033.pdb # 5: usage_00034.pdb # 6: usage_00037.pdb # 7: usage_00038.pdb # 8: usage_00039.pdb # 9: usage_00040.pdb # 10: usage_00041.pdb # 11: usage_00042.pdb # # Length: 293 # Identity: 49/293 ( 16.7%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 73/293 ( 24.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 73/293 ( 24.9%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00021.pdb 1 NKIPAVAFGTGTKYFKRL-DKQLIGTLELALRSGFRHIDGAEIYGTNKEIGIALKNV--- 56 usage_00022.pdb 1 ------GYGVFQI-----PPEKTEECVYEAIKVGYRLIDTAASYMNEEGVGRAIKRAIDE 49 usage_00023.pdb 1 ------GYGVFQI-----PPEKTEECVYEAIKVGYRLIDTAASYMNEEGVGRAIKRAIDE 49 usage_00033.pdb 1 ------GLGVWQA-----SNEEVITAIQKALEVGYRSIDTAAAYKNEEGVGKALKNA--- 46 usage_00034.pdb 1 ------GLGVWQA-----SNEEVITAIQKALEVGYRSIDTAAAYKNEEGVGKALKNA--- 46 usage_00037.pdb 1 -------LGTFRS-----KKNDAYNAVKAALEGGYRHIDTAMIYGNEEEVGRAIKDS--- 45 usage_00038.pdb 1 ------GLGTFR-------KNDAYNAVKAALEGGYRHIDTAMIYGNEEEVGRAIKDS--- 44 usage_00039.pdb 1 ------GLGTFRS-----KKNDAYNAVKAALEGGYRHIDTAMIYGNEEEVGRAIKDS--- 46 usage_00040.pdb 1 ------GLGTFRS-----KKNDAYNAVKAALEGGYRHIDTAMIYGNEEEVGRAIKDS--- 46 usage_00041.pdb 1 ------GLGTFRS-----KKNDAYNAVKAALEGGYRHIDTAMIYGNEEEVGRAIKDS--- 46 usage_00042.pdb 1 ------GLGTFRS-----KKNDAYNAVKAALEGGYRHIDTAMIYGNEEEVGRAIKD---- 45 G A GyR IDtA Y nee vG A K usage_00021.pdb 57 G-LNRKDVFITDKYNSGNHTYDGKHSKHQ------NPYNALKADLEDLGLEYVDLYLIHF 109 usage_00022.pdb 50 GIVRREELFVTTKLWV-------------SDVGYESTKKAFEKSLKKLQLEYIDLYLIHQ 96 usage_00023.pdb 50 GIVRREELFVTTKLWV-------------SDVGYESTKKAFEKSLKKLQLEYIDLYLIHQ 96 usage_00033.pdb 47 S-VNREELFITTKLWN-------------DDHK--RPREALLDSLKKLQLDYIDLYLMHW 90 usage_00034.pdb 47 S-VNREELFITTKLWN-------------DDHK--RPREALLDSLKKLQLDYIDLYLMHW 90 usage_00037.pdb 46 N-IPREEIFVTTKLWN-------------TDQGYEKTLEAFNTSLKNLGLDYIDLYLIHW 91 usage_00038.pdb 45 N-IPREEIFVTTKLWN-------------TDQGYEKTLEAFNTSLKNLGLDYIDLYLIHW 90 usage_00039.pdb 47 N-IPREEIFVTTKLWN-------------TDQGYEKTLEAFNTSLKNLGLDYIDLYLIHW 92 usage_00040.pdb 47 N-IPREEIFVTTKLWN-------------TDQGYEKTLEAFNTSLKNLGLDYIDLYLIHW 92 usage_00041.pdb 47 N-IPREEIFVTTKLWN-------------TDQGYEKTLEAFNTSLKNLGLDYIDLYLIHW 92 usage_00042.pdb 46 S-----EIFVTTKLWN-------------TDQGYEKTLEAFNTSLKNLGLDYIDLYLIHW 87 e F TtKlw A sLk L L YiDLYL H usage_00021.pdb 110 PYISE--KSHGFDLVEAWRYLERAKNEGLARNIGVSNFTIENLKSILDANTDSIPVVNQI 167 usage_00022.pdb 97 PFG---------DVHCAWKAMEEMYKDGLVRAIGVSNFYPDRLMDLMVH-HEIVPAVNQI 146 usage_00023.pdb 97 PFG---------DVHCAWKAMEEMYKDGLVRAIGVSNFYPDRLMDLMVH-HEIVPAVNQI 146 usage_00033.pdb 91 PVP--AID----HYVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDE-TGVTPVINQI 143 usage_00034.pdb 91 PVP--AID----HYVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDE-TGVTPVINQI 143 usage_00037.pdb 92 FKGY---D----NALSTYRAFETLYEEGKVKAIGVSNFNVHHLMYLMEN-AKIPPMVNQV 143 usage_00038.pdb 91 FKGY---D----NALSTYRAFETLYEEGKVKAIGVSNFNVHHLMYLMEN-AKIPPMVNQV 142 usage_00039.pdb 93 FKGY---D----NALSTYRAFETLYEEGKVKAIGVSNFNVHHLMYLMEN-AKIPPMVNQV 144 usage_00040.pdb 93 FKGY---D----NALSTYRAFETLYEEGKVKAIGVSNFNVHHLMYLMEN-AKIPPMVNQV 144 usage_00041.pdb 93 FKGY---D----NALSTYRAFETLYEEGKVKAIGVSNFNVHHLMYLMEN-AKIPPMVNQV 144 usage_00042.pdb 88 FKGY---D----NALSTYRAFETLYEEGKVKAIGVSNFNVHHLMYLMEN-AKIPPMVNQV 139 G IGV NF L l P NQ usage_00021.pdb 168 EFSAYLQDQTP-GIVEYSQQQGILIEAYGPLGPITQGR---PGPL--DKVLSKLSEKYKR 221 usage_00022.pdb 147 EIHPFYQR---QEEIEFMRNYNIQPEAWGPFA--E---G-RKN-IFQNGVLRSIAEKYGK 196 usage_00023.pdb 147 EIHPFYQR---QEEIEFMRNYNIQPEAWGPFA--E---G-RKN-IFQNGVLRSIAEKYGK 196 usage_00033.pdb 144 ELHPLMQQ---RQLHAWNATHKIQTESWSPLA--Q---G-GKG-VFDQKVIRDLADKYGK 193 usage_00034.pdb 144 ELHPLMQQ---RQLHAWNATHKIQTESWSPLA--Q---G-GKG-VFDQKVIRDLADKYGK 193 usage_00037.pdb 144 ETHVTLQN---HFLHDYCKKNNIQLEAYAPLM--S---HQIKD-LLSNETMAKIAKKHDK 194 usage_00038.pdb 143 ETHVTLQN---HFLHDYCKKNNIQLEAYAPLM--S---HQIKD-LLSNETMAKIAKKHDK 193 usage_00039.pdb 145 ETHVTLQN---HFLHDYCKKNNIQLEAYAPLM--S---HQIKD-LLSNETMAKIAKKHDK 195 usage_00040.pdb 145 ETHVTLQN---HFLHDYCKKNNIQLEAYAPLM--S---HQIKD-LLSNETMAKIAKKHDK 195 usage_00041.pdb 145 ETHVTLQN---HFLHDYCKKNNIQLEAYAPLM--S---HQIKD-LLSNETMAKIAKKHDK 195 usage_00042.pdb 140 ETHVTLQN---HFLHDYCKKNNIQLEAYAPLM--S---HQIKD-LLSNETMAKIAKKHDK 190 E h Q Iq E P k a K k usage_00021.pdb 222 NEGQILLRWVLQRGILPITTTSKEERINDVLEIFDFELDKEDEDQITKVGKEK 274 usage_00022.pdb 197 TVAQVILRWLTQKGIVAIPKTVRRERMKENISIFDFELTQEDMEKIAT----- 244 usage_00023.pdb 197 TVAQVILRWLTQKGIVAIPKTVRRERMKENISIFDFELTQEDMEKIAT----- 244 usage_00033.pdb 194 TPAQIVIRWHLDSGLVVIPKSVTPSRIAENFDVWDFRLDKDELGEIA------ 240 usage_00034.pdb 194 TPAQIVIRWHLDSGLVVIPKSVTPSRIAENFDVWDFRLDKDELGEIAK----- 241 usage_00037.pdb 195 TIPQIAIRWLIEREIVVIPKSITPERIVQNFDVFDFTLDEEDMKSIR------ 241 usage_00038.pdb 194 TIPQIAIRWLIEREIVVIPKSITPERIVQNFDVFDFTLDEEDMKSIR------ 240 usage_00039.pdb 196 TIPQIAIRWLIEREIVVIPKSITPERIVQNFDVFDFTLDEEDMKSIR------ 242 usage_00040.pdb 196 TIPQIAIRWLIEREIVVIPKSITPERIVQNFDVFDFTLDEEDMKSIRSVN--- 245 usage_00041.pdb 196 TIPQIAIRWLIEREIVVIPKSITPERIVQNFDVFDFTLDEEDMKSIRSVN--- 245 usage_00042.pdb 191 TIPQIAIRWLIEREIVVIPKSITPERIVQNFDVFDFTLDEEDMKSIRSVN--- 240 t Q RW v Ipk R n DF L I #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################