################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:37:40 2021 # Report_file: c_0976_6.html ################################################################################################ #==================================== # Aligned_structures: 7 # 1: usage_00040.pdb # 2: usage_00051.pdb # 3: usage_00115.pdb # 4: usage_00116.pdb # 5: usage_00117.pdb # 6: usage_00118.pdb # 7: usage_00139.pdb # # Length: 62 # Identity: 4/ 62 ( 6.5%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 6/ 62 ( 9.7%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 17/ 62 ( 27.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00040.pdb 1 AVLIRSVAT---DKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRNA----- 52 usage_00051.pdb 1 --CVESLPDKDGKKCLFLVKCF-----DKTFEISASDKKKKQEWIQAIHSTIHLLKLGS- 52 usage_00115.pdb 1 TCQVKPNAE---DKKSFDLISH-----NRTYHFQAEDEQDYIAWISVLTNSKEEALTMAF 52 usage_00116.pdb 1 -CQVKPNAE---DKKSFDLISH-----NRTYHFQAEDEQDYIAWISVLTNSKEEALTMAF 51 usage_00117.pdb 1 TCQVKPNAE---DKKSFDLISH-----NRTYHFQAEDEQDYIAWISVLTNSKEEALTM-- 50 usage_00118.pdb 1 -CQVKPNAE---DKKSFDLISH-----NRTYHFQAEDEQDYIAWISVLTNSKEEALTM-- 49 usage_00139.pdb 1 -LAVVNVKDNPPMKDMFKLLMF-----PESRIFQAENAKIKREWLEVLEETKRALSDKR- 53 v K F A W l usage_00040.pdb -- usage_00051.pdb -- usage_00115.pdb 53 RG 54 usage_00116.pdb 52 RG 53 usage_00117.pdb -- usage_00118.pdb -- usage_00139.pdb -- #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################