################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:41:27 2021 # Report_file: c_0016_4.html ################################################################################################ #==================================== # Aligned_structures: 12 # 1: usage_00005.pdb # 2: usage_00023.pdb # 3: usage_00024.pdb # 4: usage_00035.pdb # 5: usage_00036.pdb # 6: usage_00039.pdb # 7: usage_00040.pdb # 8: usage_00041.pdb # 9: usage_00058.pdb # 10: usage_00059.pdb # 11: usage_00060.pdb # 12: usage_00061.pdb # # Length: 346 # Identity: 112/346 ( 32.4%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 144/346 ( 41.6%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 76/346 ( 22.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00005.pdb 1 RAVLEALGSCLNNKYSEGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPY 60 usage_00023.pdb 1 -AVRECLGDRISNKYSEGYPHKRYYGGNDYVDKIEELCYKRALEAFNVSEEEWGVNVQPL 59 usage_00024.pdb 1 -AVRECLGDRISNKYSEGYPHKRYYGGNDYVDKIEELCYKRALEAFNVSEEEWGVNVQPL 59 usage_00035.pdb 1 -AVRECLGNRVSNKYSEGYPKKRYYGGNDFIDKIEELCQKRALEAFNVSDEEWGVNVQPL 59 usage_00036.pdb 1 -AVRECLGNRVSNKYSEGYPKKRYYGGNDFIDKIEELCQKRALEAFNVSDEEWGVNVQPL 59 usage_00039.pdb 1 --------NRVSNKYSEGYPKKRYYGGNDFIDKIEELCQKRALEAFNVSDEEWGVNVQPL 52 usage_00040.pdb 1 GAVRECLGNRVSNKYSEGYPKKRYYGGNDFIDKIEELCQKRALEAFNVSDEEWGVNVQPL 60 usage_00041.pdb 1 GAVRECLGNRVSNKYSEGYPKKRYYGGNDFIDKIEELCQKRALEAFNVSDEEWGVNVQPL 60 usage_00058.pdb 1 GAVRECLGNRVSNKYSEGYPKKRYYGGNDFIDKIEELCQKRALEAFNVSDEEWGVNVQPL 60 usage_00059.pdb 1 GAVRECLGNRVSNKYSEGYPKKRYYGGNDFIDKIEELCQKRALEAFNVSDEEWGVNVQPL 60 usage_00060.pdb 1 GAVRECLGNRVSNKYSEGYPKKRYYGGNDFIDKIEELCQKRALEAFNVSDEEWGVNVQPL 60 usage_00061.pdb 1 RAALEALGSCLNNKYSEG----------EVVDEIELLCQRRALEAFDLDPAQWGVNVQPY 50 NKYSEG D iE LC kRALeAf WGVNVQP usage_00005.pdb 61 SGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDT 120 usage_00023.pdb 60 SGSAANVQALYALVGVKGKIMGMHLCSGGHLTHGFFDEKKKVSITSDLFESKLYKC-NSE 118 usage_00024.pdb 60 SGSAANVQALYALVGVKGKIMGMHLCSGGHLTHGFFDEKKKVSITSDLFESKLYKC-NSE 118 usage_00035.pdb 60 SGSAANVQALYALVGVKGKIMGMHLCSGGHLTHGFFDEKKKVSITSDMFESKLYKC-NSQ 118 usage_00036.pdb 60 SGSAANVQALYALVGVKGKIMGMHLCSGGHLTHGFFDEKKKVSITSDMFESKLYKC-NSQ 118 usage_00039.pdb 53 SGSAANVQALYALVGVKGKIMGMHLCSGGHLTHGFFDEKKKVSITSDMFESKLYKC-NSQ 111 usage_00040.pdb 61 SGSAANVQALYALVGVKGKIMGMHLCSGGHLTHGFFDEKKKVSITSDMFESKLYKC-NSQ 119 usage_00041.pdb 61 SGSAANVQALYALVGVKGKIMGMHLCSGGHLTHGFFDEKKKVSITSDMFESKLYKC-NSQ 119 usage_00058.pdb 61 SGSAANVQALYALVGVKGKIMGMHLCSGGHLTHGFFDEKKKVSITSDMFESKLYKC-NSQ 119 usage_00059.pdb 61 SGSAANVQALYALVGVKGKIMGMHLCSGGHLTHGFFDEKKKVSITSDMFESKLYKC-NSQ 119 usage_00060.pdb 61 SGSAANVQALYALVGVKGKIMGMHLCSGGHLTHGFFDEKKKVSITSDMFESKLYKC-NSQ 119 usage_00061.pdb 51 SGSPANLAVYTALLQ-HDRIMGLD----------------------------PYKLNPKT 81 SGS AN ALv g IMG YK usage_00005.pdb 121 GYIDYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVA 180 usage_00023.pdb 119 GYVDMESVRNLALSFQPKVIICGYTSYPRDIDYKGFREICDEVNAYLFADISHISSFVAC 178 usage_00024.pdb 119 GYVDMESVRNLALSFQPKVIICGYTSYPRDIDYKGFREICDEVNAYLFADISHISSFVAC 178 usage_00035.pdb 119 GYVDLDAVREMALSFKPKVIICGYTSYPRDIDYQQFRQICDEVNAYLFADISHISSFVAC 178 usage_00036.pdb 119 GYVDLDAVREMALSFKPKVIICGYTSYPRDIDYQQFRQICDEVNAYLFADISHISSFVAC 178 usage_00039.pdb 112 GYVDLDAVREMALSFKPKVIICGYTSYPRDIDYQQFRQICDEVNAYLFADISHISSFVAC 171 usage_00040.pdb 120 GYVDLDAVREMALSFKPKVIICGYTSYPRDIDYQQFRQICDEVNAYLFADISHISSFVAC 179 usage_00041.pdb 120 GYVDLDAVREMALSFKPKVIICGYTSYPRDIDYQQFRQICDEVNAYLFADISHISSFVAC 179 usage_00058.pdb 120 GYVDLDAVREMALSFKPKVIICGYTSYPRDIDYQQFRQICDEVNAYLFADISHISSFVAC 179 usage_00059.pdb 120 GYVDLDAVREMALSFKPKVIICGYTSYPRDIDYQQFRQICDEVNAYLFADISHISSFVAC 179 usage_00060.pdb 120 GYVDLDAVREMALSFKPKVIICGYTSYPRDIDYQQFRQICDEVNAYLFADISHISSFVAC 179 usage_00061.pdb 82 GLIDYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAA 141 Gy D A F Pk II G Y R iDY R icDEv AyL AD HIS Va usage_00005.pdb 181 GVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRRGVRSVD--KEIL-YNLESLINSAVFPG 237 usage_00023.pdb 179 NLLNNPFTYADVVTTTTHKILRGPRSALIFFNKK----------RNPGIDQKINSSVFPS 228 usage_00024.pdb 179 NLLNNPFTYADVVTTTTHKILRGPRSALIFFNKK----------RNPGIDQKINSSVFPS 228 usage_00035.pdb 179 NILNNPFLHADVVTTTTHKILRGPRSALIFFNKK----------RNPGIEQKINSAVFPS 228 usage_00036.pdb 179 NILNNPFLHADVVTTTTHKILRGPRSALIFFNKK----------RNPGIEQKINSAVFPS 228 usage_00039.pdb 172 NILNNPFLHADVVTTTTHKILRGPRSALIFFNKK----------RNPGIEQKINSAVFPS 221 usage_00040.pdb 180 NILNNPFLHADVVTTTTHKILRGPRSALIFFNKK----------RNPGIEQKINSAVFPS 229 usage_00041.pdb 180 NILNNPFLHADVVTTTTHKILRGPRSALIFFNKK----------RNPGIEQKINSAVFPS 229 usage_00058.pdb 180 NILNNPFLHADVVTTTTHKILRGPRSALIFFNKK----------RNPGIEQKINSAVFPS 229 usage_00059.pdb 180 NILNNPFLHADVVTTTTHKILRGPRSALIFFNKK----------RNPGIEQKINSAVFPS 229 usage_00060.pdb 180 NILNNPFLHADVVTTTTHKILRGPRSALIFFNKK----------RNPGIEQKINSAVFPS 229 usage_00061.pdb 142 KVIPSPFKHADIVTTTTHKTLRGARSGLIFYRKGVKAVDPGREIP-YTFEDRINFAVFPS 200 PF advVTTTTHK LRG Rs lIF k INs VFPs usage_00005.pdb 238 LQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLI 297 usage_00023.pdb 229 FQGGPHNNKIAAVACQLKEVNTPEFKEYTKQVLLNSKALAECLLKRNLDLVTNGTDNHLI 288 usage_00024.pdb 229 FQGGPHNNKIAAVACQLKEVNTPEFKEYTKQVLLNSKALAECLLKRNLDLVTNGTDNHLI 288 usage_00035.pdb 229 FQGGPHNNKIAAVACQLKEVHSPAFKEYTQQVLLNSKALAKALISKQIDLVTNGTDNHLI 288 usage_00036.pdb 229 FQGGPHNNKIAAVACQLKEVHSPAFKEYTQQVLLNSKALAKALISKQIDLVTNGTDNHLI 288 usage_00039.pdb 222 FQGGPHNNKIAAVACQLKEVHSPAFKEYTQQVLLNSKALAKALISKQIDLVTNGTDNHLI 281 usage_00040.pdb 230 FQGGPHNNKIAAVACQLKEVHSPAFKEYTQQVLLNSKALAKALISKQIDLVTNGTDNHLI 289 usage_00041.pdb 230 FQGGPHNNKIAAVACQLKEVHSPAFKEYTQQVLLNSKALAKALISKQIDLVTNGTDNHLI 289 usage_00058.pdb 230 FQGGPHNNKIAAVACQLKEVHSPAFKEYTQQVLLNSKALAKALISKQIDLVTNGTDNHLI 289 usage_00059.pdb 230 FQGGPHNNKIAAVACQLKEVHSPAFKEYTQQVLLNSKALAKALISKQIDLVTNGTDNHLI 289 usage_00060.pdb 230 FQGGPHNNKIAAVACQLKEVHSPAFKEYTQQVLLNSKALAKALISKQIDLVTNGTDNHLI 289 usage_00061.pdb 201 LQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLV 260 QGGPHN IAaVA LK P FkEY QVl N Ala L lVt GtDNHLi usage_00005.pdb 298 LVDLRSKGTDGGRAEKVLEACSIACNKNT----------------- 326 usage_00023.pdb 289 VVDLRKYNITGSKLQETCNAINIALNKNT----------------- 317 usage_00024.pdb 289 VVDLRKYNITGSKLQETCNAINIALNKNTIPSDVDCVSPSGIRIGT 334 usage_00035.pdb 289 VVDLRKFSITGSKLQETCNAINVSLNKNTIPSDVDCVSPSGVRIGT 334 usage_00036.pdb 289 VVDLRKFSITGSKLQETCNAINVSLNKNTIPSDVDCVSPSGVRIGT 334 usage_00039.pdb 282 VVDLRKFSITGSKLQETCNAINVSLNKNTIPSDVDCVSPSGVRIGT 327 usage_00040.pdb 290 VVDLRKFSITGSKLQETCNAINVSLNKNTIPSDVDCVSPSG----- 330 usage_00041.pdb 290 VVDLRKFSITGSKLQETCNAINVSLNKNTIPSDVDCVSPSGVRIGT 335 usage_00058.pdb 290 VVDLRKFSITGSKLQETCNAINVSLNKNTIPSDVDCVSPSGVRIGT 335 usage_00059.pdb 290 VVDLRKFSITGSKLQETCNAINVSLNKNTIPSDVDCVSPSGVRIGT 335 usage_00060.pdb 290 VVDLRKFSITGSKLQETCNAINVSLNKNTIPSDVDCVSPSGVRIGT 335 usage_00061.pdb 261 LVDLRPKGLDGARAERVLELVSITANKNT----------------- 289 VDLR G a NKNT #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################