################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 22:59:20 2021 # Report_file: c_1407_104.html ################################################################################################ #==================================== # Aligned_structures: 3 # 1: usage_00890.pdb # 2: usage_01045.pdb # 3: usage_01047.pdb # # Length: 103 # Identity: 14/103 ( 13.6%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 78/103 ( 75.7%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 25/103 ( 24.3%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00890.pdb 1 QLTAAHGHMAFYGAYAMIVMTIISYAMPRLRGIGEAMDNRSQVLEMWGFWLMTVAMVFIT 60 usage_01045.pdb 1 AWVPGHFHLQVASLVTLTAMGSLYWLLPNLTGKP--ISDAQRRLGLAVVWLWFLGMMIMA 58 usage_01047.pdb 1 AWVPGHFHLQVASLVTLTAMGSLYWLLPNLTGKP--ISDAQRRLGLAVVWLWFLGMMIMA 58 awvpgHfHlqvaslvtltaMgslywllPnLtGkp isdaqrrLglavvWLwflgMmima usage_00890.pdb 61 LFLSAAGVLQVWLQRMPADGAAMTF-------MATQDQLA--- 93 usage_01045.pdb 59 VGLHWAGLLN------------VPRRAYIAQVPDAYPHA-AVP 88 usage_01047.pdb 59 VGLHWAGLLN------------VPRRAYIAQVPDAYPHA---- 85 vgLhwAGlLn vpr pdaypha #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################