################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:28:51 2021 # Report_file: c_1413_60.html ################################################################################################ #==================================== # Aligned_structures: 15 # 1: usage_00255.pdb # 2: usage_00256.pdb # 3: usage_00257.pdb # 4: usage_00258.pdb # 5: usage_00259.pdb # 6: usage_00260.pdb # 7: usage_00261.pdb # 8: usage_00262.pdb # 9: usage_00263.pdb # 10: usage_00264.pdb # 11: usage_00265.pdb # 12: usage_00266.pdb # 13: usage_00267.pdb # 14: usage_00778.pdb # 15: usage_01279.pdb # # Length: 73 # Identity: 1/ 73 ( 1.4%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 10/ 73 ( 13.7%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 40/ 73 ( 54.8%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00255.pdb 1 -ESSAKASQAVLSVWKE-D-----PKAFLALHQRLQKK-----TL----DNA-SIEDAKS 43 usage_00256.pdb 1 -ESSAKASQAVLSVWKE-D-----PKAFLALHQRLQKK-----TL----DNA-SIEDAKS 43 usage_00257.pdb 1 --SSAKASQAVLSVWKE-D-----PKAFLALHQRLQKK-----TL----DNA-SIEDAKS 42 usage_00258.pdb 1 GESSAKASQAVLSVWKE-D-----PKAFLALHQRLQKK-----TL----DNA-SIEDAKS 44 usage_00259.pdb 1 GESSAKASQAVLSVWKE-D-----PKAFLALHQRLQKK-----TL----DNA-SIEDAKS 44 usage_00260.pdb 1 GESSAKASQAVLSVWKE-D-----PKAFLALHQRLQKK-----TL----DNA-SIEDAKS 44 usage_00261.pdb 1 --SSAKASQAVLSVWKE-D-----PKAFLALHQRLQKK-----TL----DNA-SIEDAKS 42 usage_00262.pdb 1 --SSAKASQAVLSVWKE-D-----PKAFLALHQRLQKK-----TL----DNA-SIEDAKS 42 usage_00263.pdb 1 -ESSAKASQAVLSVWKE-D-----PKAFLALHQRLQKK-----TL----DNA-SIEDAKS 43 usage_00264.pdb 1 --SSAKASQAVLSVWKE-D-----PKAFLALHQRLQKK-----TL----DNA-SIEDAKS 42 usage_00265.pdb 1 -ESSAKASQAVLSVWKE-D-----PKAFLALHQRLQKK-----TL----DNA-SIEDAKS 43 usage_00266.pdb 1 -ESSAKASQAVLSVWKE-D-----PKAFLALHQRLQKK-----TL----DNA-SIEDAKS 43 usage_00267.pdb 1 --SSAKASQAVLSVWKE-D-----PKAFLALHQRLQKK-----TL----DNA-SIEDAKS 42 usage_00778.pdb 1 -GNSTKAGAAALAVAQSGD-----WETYWNYRALLKEQKNIYGKWGDNDFAD-VAKSLG- 52 usage_01279.pdb 1 --DIVEAAKQAAIAIFQ-LWKNPTDPEAQELLNKI-----------------LSPDVLDQ 40 s kA a l v d l l s usage_00255.pdb 44 TN----------- 45 usage_00256.pdb 44 TN----------- 45 usage_00257.pdb 43 TN----------- 44 usage_00258.pdb 45 TN----------- 46 usage_00259.pdb 45 TN----------- 46 usage_00260.pdb 45 TN----------- 46 usage_00261.pdb 43 TN----------- 44 usage_00262.pdb 43 TN----------- 44 usage_00263.pdb 44 TN----------- 45 usage_00264.pdb 43 TN----------- 44 usage_00265.pdb 44 TN----------- 45 usage_00266.pdb 44 TN----------- 45 usage_00267.pdb 43 TN----------- 44 usage_00778.pdb ------------- usage_01279.pdb 41 --VREHARELQKQ 51 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################