################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:57:12 2021 # Report_file: c_0888_38.html ################################################################################################ #==================================== # Aligned_structures: 8 # 1: usage_00039.pdb # 2: usage_00046.pdb # 3: usage_00300.pdb # 4: usage_00301.pdb # 5: usage_00563.pdb # 6: usage_00564.pdb # 7: usage_00565.pdb # 8: usage_00576.pdb # # Length: 107 # Identity: 5/107 ( 4.7%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 64/107 ( 59.8%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 40/107 ( 37.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00039.pdb 1 --SSVKKMILTFEKRSYKNQELRIKFPDNPEKFMES-ELDLNDIIQEMHVVATMP--DLY 55 usage_00046.pdb 1 --S-SVKKILTFEKRSYKNQELRIKF-----P-FES-ELDLNDIIQEH-VVAT-P--DLY 46 usage_00300.pdb 1 ---SVKKMILTFEKRSYKNQELRIKFPDNPEKFMES-ELDLNDIIQEMHVVATMP--DLY 54 usage_00301.pdb 1 ----VKKMILTFEKRSYKNQELRIKFPDNPEKFMES-ELDLNDIIQEMHVVATMP--DLY 53 usage_00563.pdb 1 -ESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMES-ELDLNDIIQEMHVVATMP--DLY 56 usage_00564.pdb 1 DESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMES-ELDLNDIIQEMHVVATMP--DLY 57 usage_00565.pdb 1 DESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMES-ELDLNDIIQEMHVVATMP--DLY 57 usage_00576.pdb 1 SIEVRKFVIGFIEEACKR------------------DIELLLKLIANLNMLLRDENVNVV 42 kk IltfEkrsyk eldLndiIqe vvat p dly usage_00039.pdb 56 HLLVE--LNAVQSLLGLLGH---DNTDVSIAVVDLLQELTD------ 91 usage_00046.pdb 47 HLLVE--LNAVQSLLGLLGH---DNTDVSIAVVDLLQELT------- 81 usage_00300.pdb 55 HLLVE--LNAVQSLLGLLGH---DNTDVSIAVVDLLQELTDIDT--- 93 usage_00301.pdb 54 HLLVE--LNAVQSLLGLLGH---DNTDVSIAVVDLLQELTDID---- 91 usage_00563.pdb 57 HLLVE--LNAVQSLLGLLGH---DNTDVSIAVVDLLQELTD------ 92 usage_00564.pdb 58 HLLVE--LNAVQSLLGLLGH---DNTDVSIAVVDLLQEL-------- 91 usage_00565.pdb 58 HLLVE--LNAVQSLLGLLGH---DNTDVSIAVVDLLQELT------- 92 usage_00576.pdb 43 KKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLD 89 hllve lnavqslLgllgh dntdvsiavvdllqel #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################