################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:02:12 2021 # Report_file: c_0149_1.html ################################################################################################ #==================================== # Aligned_structures: 9 # 1: usage_00016.pdb # 2: usage_00018.pdb # 3: usage_00019.pdb # 4: usage_00020.pdb # 5: usage_00021.pdb # 6: usage_00022.pdb # 7: usage_00039.pdb # 8: usage_00047.pdb # 9: usage_00050.pdb # # Length: 137 # Identity: 41/137 ( 29.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 65/137 ( 47.4%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 30/137 ( 21.9%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00016.pdb 1 --QLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKGLEWVAGITPAG-G--Y 55 usage_00018.pdb 1 DVKLVESGGGLVQPGGSRKLSCAASGFTFSSFGMHWVRQAPEKGLEWVAYIS-SG-S-ST 57 usage_00019.pdb 1 DVKLVESGGGLVQPGGSRKLSCAASGFTFSSFGMHWVRQAPEKGLEWVAYIS-SG-S-ST 57 usage_00020.pdb 1 -VKLVESGGGLVQPGGSRKLSCAASGFTFSSFGMHWVRQAPEKGLEWVAYIS-SG-S-ST 56 usage_00021.pdb 1 -VKLVESGGGLVQPGGSRKLSCAASGFTFSSFGMHWVRQAPEKGLEWVAYIS-SG-S-ST 56 usage_00022.pdb 1 -VKLVESGGGLVQPGGSRKLSCAASGFTFSSFGMHWVRQAPEKGLEWVAYIS-SG-S-ST 56 usage_00039.pdb 1 --QLVESGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIK-RNAESDA 57 usage_00047.pdb 1 -VQLVQSGAEVKKPGESLTISCKGSGYSFSSYWIGWVRRMPGKGLEWMGIIN-PR-D-SD 56 usage_00050.pdb 1 -VQLVESGGGLVQPGGSLRLSCSASGFTFSTYSMHWVRQAPGKGLEYVSAIT-GE-G-DS 56 LVeSGgglvqPGgS lSC aSGft S hWVRqap KGLEwv I usage_00016.pdb 56 TYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFFLP-----Y---AM-- 105 usage_00018.pdb 58 IYYADTVKGRFTISRDNPKNTLFLQMTSLRSEDTAMYYCARGD-------------YY-- 102 usage_00019.pdb 58 IYYADTVKGRFTISRDNPKNTLFLQMTSLRSEDTAMYYCARGD-------------YY-- 102 usage_00020.pdb 57 IYYADTVKGRFTISRDNPKNTLFLQMTSLRSEDTAMYYCARGD-------------YY-- 101 usage_00021.pdb 57 IYYADTVKGRFTISRDNPKNTLFLQMTSLRSEDTAMYYCARGD-------------YY-- 101 usage_00022.pdb 57 IYYADTVKGRFTISRDNPKNTLFLQMTSLRSEDTAMYYCARGD-------------YY-- 101 usage_00039.pdb 58 TAYAASMRGRLTISRDDSKNTAFLQMNSLKSDDTAMYYCVIRG--DV---------YN-- 104 usage_00047.pdb 57 TRYSPSFQGQVTISADKSISTAYLQWSSLKASDTAMYYCARVVA---DREGFGYYYGM-- 111 usage_00050.pdb 57 AFYADSVKGRFTISRDNSKNTLYFEMNSLRPEDTAVYYCVGGYS---NF-Y-Y-----YY 106 Ya Gr TIS D knT lqm SL DTA YYC usage_00016.pdb 106 DYW----GQGTLVT--- 115 usage_00018.pdb 103 GSRGAYWGQGTLVTV-- 117 usage_00019.pdb 103 GSRGAYWGQGTLVTV-- 117 usage_00020.pdb 102 GSRGAYWGQGTLVTV-- 116 usage_00021.pdb 102 GSRGAYWGQGTLVTV-- 116 usage_00022.pdb 102 GSRGAYWGQGTLVTV-- 116 usage_00039.pdb 105 RQW----GQGTLVT--- 114 usage_00047.pdb 112 DVW----GQGTTVTVS- 123 usage_00050.pdb 107 TMDVW--GQGTTVTVSS 121 GQGT VT #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################