################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:32:45 2021 # Report_file: c_0535_8.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00004.pdb # 2: usage_00043.pdb # 3: usage_00053.pdb # 4: usage_00054.pdb # 5: usage_00055.pdb # 6: usage_00056.pdb # 7: usage_00057.pdb # 8: usage_00058.pdb # 9: usage_00059.pdb # 10: usage_00070.pdb # 11: usage_00080.pdb # # Length: 125 # Identity: 17/125 ( 13.6%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 71/125 ( 56.8%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 42/125 ( 33.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00004.pdb 1 LMPA------LMAVFQHVRTRIQSELDCQRLDLTPPDVHVLKLIDEQRGLNLQDLGRQMC 54 usage_00043.pdb 1 LMPA------LMAVFQHVWTRIQSELDCQRLDLTPPDVHVLKLIDEQRGLNLQDLGRQMC 54 usage_00053.pdb 1 ----NPD-LPALAVFQHVRTRIQSELDCQRLDLTPPDVHVLKLIDEQRGLNLQDLGRQ-C 54 usage_00054.pdb 1 ----NPD-LPALAVFQHVRTRIQSELDCQRLDLTPPDVHVLKLIDEQRGLNLQDLGRQ-C 54 usage_00055.pdb 1 ------D-LPALAVFQHVRTRIQSELDCQRLDLTPPDVHVLKLIDEQRGLNLQDLGRQ-C 52 usage_00056.pdb 1 ----NPD-LPALAVFQHVRTRIQSELDCQRLDLTPPDVHVLKLIDEQRGLNLQDLGRQ-C 54 usage_00057.pdb 1 --------LPALAVFQHVRTRIQSELDCQRLDLTPPDVHVLKLIDEQRGLNLQDLGRQ-C 51 usage_00058.pdb 1 --------LPALAVFQHVRTRIQSELDCQRLDLTPPDVHVLKLIDEQRGLNLQDLGRQ-C 51 usage_00059.pdb 1 --------LPALAVFQHVRTRIQSELDCQRLDLTPPDVHVLKLIDEQRGLNLQDLGRQ-C 51 usage_00070.pdb 1 LMPA------LMAVFQHVRTRIQSELDCQRLDLTPPDVHVLKLIDEQ---RGLNLQDL-G 50 usage_00080.pdb 1 ------YAPYLNR-IGRYNANLRKE-T--ALGLSTAK-RALAILSAKDGLPIGTLGIFAV 49 a fqhv triqsE d rLdLtppd hvLklideq Lg usage_00004.pdb 55 -------ALITRKIRELEGRNLVRR------------QLFLTDEGLAIHLHAELIMSRVH 95 usage_00043.pdb 55 ----RDKALITRKIRELEGRNLVRRE--RNPSDQRSFQLFLTDEGLAIHQHAEAIMSRVH 108 usage_00053.pdb 55 ----RDKALITRKIRELEGRNLVRRERS--------FQLFLTDEGLAIHQHAEAI-SRVH 101 usage_00054.pdb 55 ----RDKALITRKIRELEGRNLVRRE--R-------FQLFLTDEGLAIHQHAEAI-SRVH 100 usage_00055.pdb 53 ----RDKALITRKIRELEGRNLVRRE--RNPSDQRSFQLFLTDEGLAIHQHAEAI-SRVH 105 usage_00056.pdb 55 ----RDKALITRKIRELEGRNLVRRE--RNPSDQRSFQLFLTDEGLAIHQHAEAI-SRVH 107 usage_00057.pdb 52 ----RDKALITRKIRELEGRNLVRRE--R-------FQLFLTDEGLAIHQHAEAI-SRVH 97 usage_00058.pdb 52 ----RDKALITRKIRELEGRNLVRRE--RN----RSFQLFLTDEGLAIHQHAEAI-SRVH 100 usage_00059.pdb 52 ----RDKALITRKIRELEGRNLVRRE--RNPSDQRSFQLFLTDEGLAIHQHAEAI-SRVH 104 usage_00070.pdb 51 RQMCRDKALITRKIRELEGRNLVRRE--RNPSDQRSFQLFLTDEGLAIHQHAEAIMSRVH 108 usage_00080.pdb 50 ----VEQSTLSRALDGLQADGLVRRE--VD-DQ-RSSRVYLTPAGRAVYDRLWPH-RASH 100 alitRkireLegrnLVRR qlfLTdeGlAih hae i srvH usage_00004.pdb 96 DELFA 100 usage_00043.pdb 109 DELF- 112 usage_00053.pdb 102 DELF- 105 usage_00054.pdb 101 DELF- 104 usage_00055.pdb 106 DELF- 109 usage_00056.pdb 108 DEL-- 110 usage_00057.pdb 98 DELF- 101 usage_00058.pdb 101 DELF- 104 usage_00059.pdb 105 DELF- 108 usage_00070.pdb 109 DE-L- 111 usage_00080.pdb 101 DRFQ- 104 De #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################