################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:51:35 2021 # Report_file: c_0827_14.html ################################################################################################ #==================================== # Aligned_structures: 12 # 1: usage_00005.pdb # 2: usage_00038.pdb # 3: usage_00039.pdb # 4: usage_00040.pdb # 5: usage_00041.pdb # 6: usage_00042.pdb # 7: usage_00239.pdb # 8: usage_00285.pdb # 9: usage_00286.pdb # 10: usage_00287.pdb # 11: usage_00288.pdb # 12: usage_00373.pdb # # Length: 81 # Identity: 13/ 81 ( 16.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 22/ 81 ( 27.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 15/ 81 ( 18.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00005.pdb 1 -VVEEAKQALTNIGEILKAAGCDFTNVVKATVLLADINDFSAVNDVYKQYFQSSFPARAA 59 usage_00038.pdb 1 --AEEAKQALKNLGEILKAAGCDFTNVVKTTVLLADINDFGTVNEIYKTYFQGNLPARAA 58 usage_00039.pdb 1 --AEEAKQALKNLGEILKAAGCDFTNVVKTTVLLADINDFGTVNEIYKTYFQGNLPARAA 58 usage_00040.pdb 1 -IKEQTHQVFSNLKAVLEEAGASFETVVKATVFIADMEQFAEVNEVYGQYFDTHKPARSC 59 usage_00041.pdb 1 DIKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLKD----AKMNEVYAEYFGESKPARVA 56 usage_00042.pdb 1 -IKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLK-------MNEVYAEYFGESKPARVA 52 usage_00239.pdb 1 --KVQTRQVLDNIKEIVKAAGFSLSDVAMAFVFLKDMNMFNDFNSVYAEYFKDKPPARVT 58 usage_00285.pdb 1 TIEEQTQQVLKNISAILTEAGTDFDHVVKTTCFLSDIDDFVPFNEVYATAFKSDFPARSA 60 usage_00286.pdb 1 --EEQTQQVLKNISAILTEAGTDFDHVVKTTCFLSDIDDFVPFNEVYATAFKSDFPARSA 58 usage_00287.pdb 1 TIEEQTQQVLKNISAILTEAGTDFDHVVKTTCFLSDIDDFVPFNEVYATAFKSDFPARSA 60 usage_00288.pdb 1 TIEEQTQQVLKNISAILTEAGTDFDHVVKTTCFLSDIDDFVPFNEVYATAFKSDFPARSA 60 usage_00373.pdb 1 ---ESAKRALDNLKAIVEGAGYSMDDIVKVTVYITDISRFSEFNEVYREYFNRPYPARAV 57 q l N i AG v k t N Y F PAR usage_00005.pdb 60 YQVAALPKGGRVEIEAIAVQ- 79 usage_00038.pdb 59 YQVAALPKGSRIEIEAIAVQ- 78 usage_00039.pdb 59 YQVAALPKGSRIEIEAIAVQG 79 usage_00040.pdb 60 VEVARLPKDALVEIEVIALVK 80 usage_00041.pdb 57 VEVSRLPKDVLIEIEAIAYK- 76 usage_00042.pdb 53 VEVSRLPKDVLIEIEAIAYKE 73 usage_00239.pdb 59 VEVSRLPKDALIEIAVICSK- 78 usage_00285.pdb 61 VEVARLPKDVKIEIEVI---- 77 usage_00286.pdb 59 VEVARLPKDVKIEIEVIAE-- 77 usage_00287.pdb 61 VEVARLPKDVKIEIEV----- 76 usage_00288.pdb 61 VEVARLPKDVKIEIEVIAE-- 79 usage_00373.pdb 58 VGVAALPLGAPLEVEAVLY-- 76 V LPk Eie #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################