################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:24:54 2021 # Report_file: c_0392_13.html ################################################################################################ #==================================== # Aligned_structures: 15 # 1: usage_00008.pdb # 2: usage_00041.pdb # 3: usage_00060.pdb # 4: usage_00061.pdb # 5: usage_00072.pdb # 6: usage_00145.pdb # 7: usage_00174.pdb # 8: usage_00209.pdb # 9: usage_00214.pdb # 10: usage_00221.pdb # 11: usage_00222.pdb # 12: usage_00223.pdb # 13: usage_00224.pdb # 14: usage_00225.pdb # 15: usage_00226.pdb # # Length: 93 # Identity: 3/ 93 ( 3.2%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 12/ 93 ( 12.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 35/ 93 ( 37.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00008.pdb 1 -IVLTQSP---ASLAVSLGQRATISCRASESVDNY-GFSFMNWFQQKPGQPPKLLIY-A- 53 usage_00041.pdb 1 --ELTQSP---AIMSAPPGEKATMTCSASSSV-----S-EMHWYQQKSGTSPKGLI---- 45 usage_00060.pdb 1 --VLTQSP---ASLAVSLGQRATISCRASESVDYY-GKSFMNWFQQKPGQPPKLLIY-A- 52 usage_00061.pdb 1 --VLTQSP---ASLAVSLGQRATISCRASESVDYY-GKSFMNWFQQKPGQPPKLLIY-A- 52 usage_00072.pdb 1 --KPDILDPVEDTLEVELGKPLTISCKARF-GFERVFNPVIKWYIKDSDLEWEVSVPE-- 55 usage_00145.pdb 1 --VMTQTP---LSLSVTPGQPASISCKSSESLRQSNGKTSLYWYRQKPGQSPQLLVF-E- 53 usage_00174.pdb 1 --PPTFSP---ALLVVTEGDNATFTCSFSNTS--E-SF-HVVWHRESPSGQTDTLAA-FP 50 usage_00209.pdb 1 DIVLTQSP---ASLAVSLGQRATISCRASESVVRY-GNSFMHWYQQKPGQPPKLLIY-R- 54 usage_00214.pdb 1 --VLTQSP---ASLAVSLGQRATISCRASESVDNY-GISFMSWFQQKPGQPPKLLIY-A- 52 usage_00221.pdb 1 --VLTQSP---GSLTVSLGQRATISCRASESVDNF-GKSFMHWYQQKPGQSPKLLIY-R- 52 usage_00222.pdb 1 --VLTQSP---GSLTVSLGQRATISCRASESVDNF-GKSFMHWYQQKPGQSPKLLIY-R- 52 usage_00223.pdb 1 --VLTQSP---GSLTVSLGQRATISCRASESVDNF-GKSFMHWYQQKPGQSPKLLIY-R- 52 usage_00224.pdb 1 --VLTQSP---GSLTVSLGQRATISCRASESVDNF-GKSFMHWYQQKPGQSPKLLIY-R- 52 usage_00225.pdb 1 --VLTQSP---GSLTVSLGQRATISCRASESVDNF-GKSFMHWYQQKPGQSPKLLIY-R- 52 usage_00226.pdb 1 --VLTQSP---GSLTVSLGQRATISCRASESVDNF-GKSFMHWYQQKPGQSPKLLIY-R- 52 t p l v G at C s W l usage_00008.pdb 54 ISNRGSGVPARFSGSG-S-G--TDFS--LNIHP 80 usage_00041.pdb 46 --------PARFSGSG-S-G--TDYS--LTISS 64 usage_00060.pdb 53 ASNQGSGVPARFSGSG-S-G--TDFS--LHIHP 79 usage_00061.pdb 53 ASNQGSGVPARFSGSG-S-G--TDFS--LHIHP 79 usage_00072.pdb 56 ---------AKSIKST-L--KDEIIERNIILEK 76 usage_00145.pdb 54 VSNRFSGVSDRFVGSG-S-G--TDFT--LRISR 80 usage_00174.pdb 51 ---EDPGQDARFRVTQLPNG--RDFH--MS--- 73 usage_00209.pdb 55 ASSLESGIPTRFSGSG-S-R--TDFT--LTI-- 79 usage_00214.pdb 53 ASNQGSGVPARFSGSG-S-G--TDFS--LNIHP 79 usage_00221.pdb 53 ASNREGIPARFNGSGS-G----TDFA--LTINP 78 usage_00222.pdb 53 ASNREGIPARFNGSGS-G----TDFA--LTINP 78 usage_00223.pdb 53 ASNREGIPARFNGSGS-G----TDFA--LTINP 78 usage_00224.pdb 53 ASNREGIPARFNGSGS-G----TDFA--LTINP 78 usage_00225.pdb 53 ASNREGIPARFNGSGS-G----TDFA--LTINP 78 usage_00226.pdb 53 ASNREGIPARFNGSGS-G----TDFA--LTINP 78 d #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################