################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 04:13:38 2021 # Report_file: c_0119_11.html ################################################################################################ #==================================== # Aligned_structures: 31 # 1: usage_00001.pdb # 2: usage_00002.pdb # 3: usage_00003.pdb # 4: usage_00004.pdb # 5: usage_00005.pdb # 6: usage_00006.pdb # 7: usage_00007.pdb # 8: usage_00008.pdb # 9: usage_00015.pdb # 10: usage_00016.pdb # 11: usage_00048.pdb # 12: usage_00049.pdb # 13: usage_00050.pdb # 14: usage_00066.pdb # 15: usage_00069.pdb # 16: usage_00083.pdb # 17: usage_00092.pdb # 18: usage_00095.pdb # 19: usage_00101.pdb # 20: usage_00111.pdb # 21: usage_00121.pdb # 22: usage_00126.pdb # 23: usage_00153.pdb # 24: usage_00163.pdb # 25: usage_00188.pdb # 26: usage_00189.pdb # 27: usage_00239.pdb # 28: usage_00256.pdb # 29: usage_00264.pdb # 30: usage_00270.pdb # 31: usage_00271.pdb # # Length: 109 # Identity: 33/109 ( 30.3%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 54/109 ( 49.5%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 11/109 ( 10.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 --IVLTQSPAIMSASPGEKVTMTCSASSSVSYMHWYQQKSGTSPKRWIYDTSKLASGVPA 58 usage_00002.pdb 1 --IVLTQSPAIMSASPGEKVTMTCSASSSVSYMHWYQQKSGTSPKRWIYDTSKLASGVPA 58 usage_00003.pdb 1 --IVLTQSPAIMSASPGEKVTMTCSASSSVSYMHWYQQKSGTSPKRWIYDTSKLASGVPA 58 usage_00004.pdb 1 --IVLTQSPAIMSASPGEKVTMTCSASSSVSYMHWYQQKSGTSPKRWIYDTSKLASGVPA 58 usage_00005.pdb 1 --IVLTQSPAIMSASPGEKVTMTCSASSSVSYMHWYQQKSGTSPKRWIYDTSKLASGVPA 58 usage_00006.pdb 1 --IVLTQSPAIMSASPGEKVTMTCSASSSVSYMHWYQQKSGTSPKRWIYDTSKLASGVPA 58 usage_00007.pdb 1 --IVLTQSPAIMSASPGEKVTMTCSASSSVSYMHWYQQKSGTSPKRWIYDTSKLASGVPA 58 usage_00008.pdb 1 --IVLTQSPAIMSASPGEKVTMTCSASSSVSYMHWYQQKSGTSPKRWIYDTSKLASGVPA 58 usage_00015.pdb 1 --IVLSQSPAILSASPGEKVTMTCRASSSVSYIHWFQQKPGSSPKPWIYATSNLASGVPV 58 usage_00016.pdb 1 --IVLSQSPAILSASPGEKVTMTCRASSSVSYIHWFQQKPGSSPKPWIYATSNLASGVPV 58 usage_00048.pdb 1 --IVLTQSPAIMSASPGEKVTMTCSASSSVSYMHWYQQKSGTSPKRWIYDTSKLASGVPA 58 usage_00049.pdb 1 --IVLTQSPAIMSASPGEKVTMTCSASSSVSYMHWYQQKSGTSPKRWIYDTSKLASGVPA 58 usage_00050.pdb 1 -DIVLTQSPAIMSAAPGDKVTMTCSASSSVSYIHWYQQKSGTSPKRWIYDTSKLTSGVPV 59 usage_00066.pdb 1 -EIVLTQSPAITAASLGQKVTITCSASSSVSYMHWYQQKSGTSPKPWIYEISKLASGVPA 59 usage_00069.pdb 1 -DIVLTQSPAIMSAAPGDKVTMTCSASSSVSYIHWYQQKSGTSPKRWIYDTSKLTSGVPV 59 usage_00083.pdb 1 -DIVLTQSPAIMSAAPGDKVTMTCSASSSVSYIHWYQQKSGTSPKRWIYDTSKLTSGVPV 59 usage_00092.pdb 1 ---VLSQSPAILSASPGEKVTMTCRASSSVSYIHWFQQKPGSSPKPWIYATSNLASGVPV 57 usage_00095.pdb 1 -DIVLTQSPDITAASLGQKVTITCSASSSVSYMHWYQQKSGTSPKPWIFEISKLASGVPA 59 usage_00101.pdb 1 --IVLTQSPAIMSASLGEEITLTCSASSSVNYMHWYQQKSGTSPKLLIYTTSNLASGVPS 58 usage_00111.pdb 1 ---VLTQSPAIMSASPGEKVTMTCSASSSVSYMHWYQQKSGTSPKRWIYDTSKLASGVPA 57 usage_00121.pdb 1 -DIVLTQSPAIMSAAPGDKVTMTCSASSSVSYIHWYQQKSGTSPKRWIYDTSKLTSGVPV 59 usage_00126.pdb 1 ---VLTQSPAIMSASPGEKVTMTCSASSSVNYMYWYQQKSGTSPKRWIYDTSKLASGVPV 57 usage_00153.pdb 1 --LVMTQTPAIMSASPGEKVTMTCSASSSVSSVHWYQQKSGTSPKRWIYDTSKLPSGVPG 58 usage_00163.pdb 1 MDIVLTQSPAIMSASPGEKVTMTCSASSSVNYMYWYQQKSGTSPKRWIYDTSKLASGVPV 60 usage_00188.pdb 1 --IVLSQSPAILSASPGEKVTMTCRTSSSVSYMHWYQQKPGSSPKPWIYATSNLASGVPF 58 usage_00189.pdb 1 --IVLSQSPAILSASPGEKVTMTCRTSSSVSYMHWYQQKPGSSPKPWIYATSNLASGVPF 58 usage_00239.pdb 1 -EIVLTQSPGILSLSPGETATLFCKASQGGNAMTWYQKRRGQVPRLLIYDTSRRASGVPD 59 usage_00256.pdb 1 ---QMTQSPAIMSASPGEKVTMTCSASSSVSYMYWYQQKPGSSPRLLIYDSTNLASGVPV 57 usage_00264.pdb 1 -DIVLTQSPAIMSAAPGDKVTMTCSASSSVSYIHWYQQKSGTSPKRWIYDTSKLTSGVPV 59 usage_00270.pdb 1 -DIVLTQSPAIMSAAPGDKVTMTCSASSSVSYIHWYQQKSGTSPKRWIYDTSKLTSGVPV 59 usage_00271.pdb 1 -DIVLTQSPAIMSAAPGDKVTMTCSASSSVSYIHWYQQKSGTSPKRWIYDTSKLTSGVPV 59 v QsP I a G T tC Sssv W Qqk G sP Iy s l SGVP usage_00001.pdb 59 RFSGSGSGTSYSLTISSMEAEDAATYYCQQWSNSPPTFGAGAKLEL--- 104 usage_00002.pdb 59 RFSGSGSGTSYSLTISSMEAEDAATYYCQQWSNSPPTFGAGAKLEL--- 104 usage_00003.pdb 59 RFSGSGSGTSYSLTISSMEAEDAATYYCQQWSNSPPTFGAGAKLEL--- 104 usage_00004.pdb 59 RFSGSGSGTSYSLTISSMEAEDAATYYCQQWSNSPPTFGAGAKLEL--- 104 usage_00005.pdb 59 RFSGSGSGTSYSLTISSMEAEDAATYYCQQWSNSPPTFGAGAKLEL--- 104 usage_00006.pdb 59 RFSGSGSGTSYSLTISSMEAEDAATYYCQQWSNSPPTFGAGAKLEL--- 104 usage_00007.pdb 59 RFSGSGSGTSYSLTISSMEAEDAATYYCQQWSNSPPTFGAGAKLEL--- 104 usage_00008.pdb 59 RFSGSGSGTSYSLTISSMEAEDAATYYCQQWSNSPPTFGAGAKLEL--- 104 usage_00015.pdb 59 RFSGSGSGTSYSLTISRVEAEDAATYYCQQWTSNPPTFGGGTKLEI--- 104 usage_00016.pdb 59 RFSGSGSGTSYSLTISRVEAEDAATYYCQQWTSNPPTFGGGTKLEI--- 104 usage_00048.pdb 59 RFSGSGSGTSYSLTISSMEAEDAATYYCQQWSNSPPTFGAGAKLEL--- 104 usage_00049.pdb 59 RFSGSGSGTSYSLTISSMEAEDAATYYCQQWSNSPPTFGAGAKLEL--- 104 usage_00050.pdb 60 RFSGSGSGTSYSLTINTMEAEDAATYYCQQWSSHPQTFGGGTKLEILRA 108 usage_00066.pdb 60 RFSGSGSGTSYSLTISSMEAEDAAIYYCQQWNYPFTFGSGTKLEI---- 104 usage_00069.pdb 60 RFSGSGSGTSYSLTINTMEAEDAATYYCQQWSSHPQTFGGGTKLEI--- 105 usage_00083.pdb 60 RFSGSGSGTSYSLTINTMEAEDAATYYCQQWSSHPQTFGGGTKLEI--- 105 usage_00092.pdb 58 RFSGSGSGTSYSLTISRVEAEDAATYYCQQWTSNPPTFGGGTKLEIKRT 106 usage_00095.pdb 60 RFSGSGSGTSYSLTISSMEAEDAAIYYCQQWNYPFTFGGGTKLEI---- 104 usage_00101.pdb 59 RFSGSGSGTFYSLTISSVEAEDAADYYCHQWSSYPTFGGGTKLEIK-RA 106 usage_00111.pdb 58 RFSGSGSGTSYSLTISSMEAEDAATYFCHQWRSNPYTFGGGTKLEIKRA 106 usage_00121.pdb 60 RFSGSGSGTSYSLTINTMEAEDAATYYCQQWSSHPQTFGGGTKLEI--- 105 usage_00126.pdb 58 RFSGSGSGTSYSLTISSMETEDAATYYCQQWGRNPTFGGGTKLEI---- 102 usage_00153.pdb 59 RFSGSGSGTSYSLTISSMEAEDAATYYCQQWSSNPPTFGAGTKLEV--- 104 usage_00163.pdb 61 RFSGSGSGTSYSLTISSMETEDAATYYCQQWGRNPTFGGGTKLEI---- 105 usage_00188.pdb 59 RFSGSGSGTSYSLTISRVEAEDAATYYCQQWNSNPPTFGGGTKLEI--- 104 usage_00189.pdb 59 RFSGSGSGTSYSLTISRVEAEDAATYYCQQWNSNPPTFGGGTKLEI--- 104 usage_00239.pdb 60 RFVGSGSGTDFFLTINKLDREDFAVYYCQQF----EFFGLGSELEV--- 101 usage_00256.pdb 58 RFSGSGSGTSYSLTISRMEAEDAATYYCQQWSTYPLTFGAGTKLEL--- 103 usage_00264.pdb 60 RFSGSGSGTSYSLTINTMEAEDAATYYCQQWSSHPQTFGGGTKLEI--- 105 usage_00270.pdb 60 RFSGSGSGTSYSLTINTMEAEDAATYYCQQWSSHPQTFGGGTKLEILRA 108 usage_00271.pdb 60 RFSGSGSGTSYSLTINTMEAEDAATYYCQQWSSHPQTFGGGTKLEILRA 108 RFsGSGSGT ysLTI e EDaA YyC Qw g #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################