################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:40:00 2021 # Report_file: c_1258_35.html ################################################################################################ #==================================== # Aligned_structures: 11 # 1: usage_00119.pdb # 2: usage_00120.pdb # 3: usage_00121.pdb # 4: usage_00122.pdb # 5: usage_00123.pdb # 6: usage_00245.pdb # 7: usage_00246.pdb # 8: usage_00489.pdb # 9: usage_00490.pdb # 10: usage_00500.pdb # 11: usage_01003.pdb # # Length: 33 # Identity: 1/ 33 ( 3.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 8/ 33 ( 24.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 17/ 33 ( 51.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00119.pdb 1 APTATV--TPSSGLS------D-GTVVKVAGAG 24 usage_00120.pdb 1 APTATV--TPSSGLS------D-GTVVKVAGAG 24 usage_00121.pdb 1 APTATV--TPSSGLS------D-GTVVKVAGAG 24 usage_00122.pdb 1 -PTATV--TPSSGLS------D-GTVVKVAGAG 23 usage_00123.pdb 1 APTATV--TPSSGLS------D-GTVVKVAGAG 24 usage_00245.pdb 1 APTATV--TPSSGLS------D-GTVVKVAGAG 24 usage_00246.pdb 1 -PTATV--TPSSGLS------D-GTVVKVAGAG 23 usage_00489.pdb 1 -PAFSV--SPASGLS------D-GQSVSVSVS- 22 usage_00490.pdb 1 -PAFSV--SPASGLS------D-GQSVSVSVS- 22 usage_00500.pdb 1 ------RAPHVSEKASTAMEKSNTIVLKVAK-- 25 usage_01003.pdb 1 APGVTV--TPATGLS------N-GQTVTVSATG 24 p sgls g v V #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################