################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 05:44:24 2021 # Report_file: c_1351_1.html ################################################################################################ #==================================== # Aligned_structures: 41 # 1: usage_00026.pdb # 2: usage_00027.pdb # 3: usage_00032.pdb # 4: usage_00035.pdb # 5: usage_00092.pdb # 6: usage_00096.pdb # 7: usage_00135.pdb # 8: usage_00136.pdb # 9: usage_00161.pdb # 10: usage_00184.pdb # 11: usage_00185.pdb # 12: usage_00186.pdb # 13: usage_00187.pdb # 14: usage_00227.pdb # 15: usage_00229.pdb # 16: usage_00280.pdb # 17: usage_00426.pdb # 18: usage_00644.pdb # 19: usage_00645.pdb # 20: usage_00647.pdb # 21: usage_00652.pdb # 22: usage_00716.pdb # 23: usage_00728.pdb # 24: usage_00846.pdb # 25: usage_00847.pdb # 26: usage_00848.pdb # 27: usage_00849.pdb # 28: usage_00850.pdb # 29: usage_00851.pdb # 30: usage_00852.pdb # 31: usage_00853.pdb # 32: usage_00854.pdb # 33: usage_00855.pdb # 34: usage_00856.pdb # 35: usage_00857.pdb # 36: usage_00957.pdb # 37: usage_01002.pdb # 38: usage_01032.pdb # 39: usage_01107.pdb # 40: usage_01108.pdb # 41: usage_01117.pdb # # Length: 78 # Identity: 46/ 78 ( 59.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 46/ 78 ( 59.0%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 32/ 78 ( 41.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00026.pdb 1 -------DRNLAENISRVLYP-----NEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCR 48 usage_00027.pdb 1 -----VLDRNLAENISRVLYP-----NEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCR 50 usage_00032.pdb 1 ----AVLDRNLAENISRVLYP------EGKELRLKQEYFVVAATLQDIIRRFKSSKFGCR 50 usage_00035.pdb 1 GYIQAVLDRNLAENISRVLYPNDNFF-EGKELRLKQEYFVVAATLQDIIRRFKSS----- 54 usage_00092.pdb 1 GYIQAVLDRNLAENISRVLYPNDNFF-EGKELRLKQEYFVVAATLQDIIRRFKSSKFGCR 59 usage_00096.pdb 1 GYIQAVLDRNLAENISRVLYPNDNFF-EGKELRLKQEYFVVAATLQDIIRRFKSS----- 54 usage_00135.pdb 1 GYIQAVLDRNLAENISRVLYPNDNFF-EGKELRLKQEYFVVAATLQDIIRRFKSS----- 54 usage_00136.pdb 1 GYIQAVLDRNLAENISRVLYPNDNFF-EGKELRLKQEYFVVAATLQDIIRRFKSS----- 54 usage_00161.pdb 1 -YIQAVLDRNLAENISRVLYPNDNFF-EGKELRLKQEYFVVAATLQDIIRRFKSS----- 53 usage_00184.pdb 1 ----AVLDRNLAENIS-------------KELRLKQEYFVVAATLQDIIRRFKSSKFGCR 43 usage_00185.pdb 1 ----AVLDRNLAENIS-------------KELRLKQEYFVVAATLQDIIRRFKSSKFGCR 43 usage_00186.pdb 1 ---QAVLDRNLAENIS-------------KELRLKQEYFVVAATLQDIIRRFKSSKFGCR 44 usage_00187.pdb 1 ----AVLDRNLAENIS-------------KELRLKQEYFVVAATLQDIIRRFKSSKFGCR 43 usage_00227.pdb 1 GYIQAVLDRNLAENISRVLYPNDNFF-EGKELRLKQEYFVVAATLQDIIRRFKSSKFGCR 59 usage_00229.pdb 1 GYIQAVLDRNLAENISRVLYPNDNFF-EGKELRLKQEYFVVAATLQDIIRRFKSSKFGCR 59 usage_00280.pdb 1 GYIQAVLDRNLAENISRVLYPNDNFF-EGKELRLKQEYFVVAATLQDIIRRFKSS----- 54 usage_00426.pdb 1 -YIQAVLDRNLAENISRVLYPNDNFF-EGKELRLKQEYFVVAATLQDIIRRFKS------ 52 usage_00644.pdb 1 GYIQAVLDRNLAENISRVLYPNDNFF-EGKELRLKQEYFVVAATLQDIIRRFKSS----- 54 usage_00645.pdb 1 GYIQAVLDRNLAENISRVLYPNDNFF-EGKELRLKQEYFVVAATLQDIIRRFKSSK---- 55 usage_00647.pdb 1 GYIQAVLDRNLAENISRVLYPNDNFF-EGKELRLKQEYFVVAATLQDIIRRFKSSK---- 55 usage_00652.pdb 1 -YIQAVLDRNLAENISRVLYPNDNFF-EGKELRLKQEYFVVAATLQDIIRRFKSS----- 53 usage_00716.pdb 1 GYIQAVLDRNLAENISRVLYPNDNFF-EGKELRLKQEYFVVAATLQDIIRRFKSS----- 54 usage_00728.pdb 1 GYIQAVLDRNLAENISRVLYPNDNFF-EGKELRLKQEYFVVAATLQDIIRRFKSS----- 54 usage_00846.pdb 1 ----AVLDRNLAENISRVLYP------EGKELRLKQEYFVVAATLQDIIRRFKS------ 44 usage_00847.pdb 1 --IQAVLDRNLAENISRVLYP-------GKELRLKQEYFVVAATLQDIIRRFKSS----- 46 usage_00848.pdb 1 ----AVLDRNLAENISRVLY-------EGKELRLKQEYFVVAATLQDIIRRFKSS----- 44 usage_00849.pdb 1 ----AVLDRNLAENISRVLY--------GKELRLKQEYFVVAATLQDIIRRFKSSKFGCR 48 usage_00850.pdb 1 -YIQAVLDRNLAENISRVLYP-------GKELRLKQEYFVVAATLQDIIRRFKSSKFGCR 52 usage_00851.pdb 1 -----VLDRNLAENISRVLY--------GKELRLKQEYFVVAATLQDIIRRFKSS----- 42 usage_00852.pdb 1 --IQAVLDRNLAENISRVLY--------GKELRLKQEYFVVAATLQDIIRRFKSSKFGCR 50 usage_00853.pdb 1 ----AVLDRNLAENISRVLY--------GKELRLKQEYFVVAATLQDIIRRFKSS----- 43 usage_00854.pdb 1 ---QAVLDRNLAENISRVLY--------GKELRLKQEYFVVAATLQDIIRRFKSSKFGCR 49 usage_00855.pdb 1 -YIQAVLDRNLAENISRVLY--------GKELRLKQEYFVVAATLQDIIRRFKSSKFGCR 51 usage_00856.pdb 1 --IQAVLDRNLAENISRVLYP------EGKELRLKQEYFVVAATLQDIIRRFKSSK---- 48 usage_00857.pdb 1 ----AVLDRNLAENISRVLY-------EGKELRLKQEYFVVAATLQDIIRRFKSS----- 44 usage_00957.pdb 1 --IQAVLDRNLAENISRVLYP------EGKELRLKQEYFVVAATLQDIIRRFKSSKFGCR 52 usage_01002.pdb 1 GYIQAVLDRNLAENISRVLYPNDNFF-EGKELRLKQEYFVVAATLQDIIRRFKSSKFGCR 59 usage_01032.pdb 1 GYIQAVLDRNLAENISRVLYPNDNFF-EGKELRLKQEYFVVAATLQDIIRRFKS------ 53 usage_01107.pdb 1 GYIQAVLDRNLAENISRVLYPNDNFF-EGKELRLKQEYFVVAATLQDIIRRFKSS----- 54 usage_01108.pdb 1 GYIQAVLDRNLAENISRVLYPNDNFF-EGKELRLKQEYFVVAATLQDIIRRFKSS----- 54 usage_01117.pdb 1 GYIQAVLDRNLAENISRVLYPNDNFF-EGKELRLKQEYFVVAATLQDIIRRFKSS----- 54 DRNLAENIS KELRLKQEYFVVAATLQDIIRRFKS usage_00026.pdb 49 DPVRTNFDAFPDKVAIQL 66 usage_00027.pdb 51 DPVRTNFDAFPDKVAIQL 68 usage_00032.pdb 51 DPVRTNFDAFPDKVAIQL 68 usage_00035.pdb 55 ----TNFDAFPDKVAIQL 68 usage_00092.pdb 60 DPVRTNFDAFPDKVAIQL 77 usage_00096.pdb 55 -----NFDAFPDKVAIQL 67 usage_00135.pdb 55 ----TNFDAFPDKVAIQL 68 usage_00136.pdb 55 ----TNFDAFPDKVAIQL 68 usage_00161.pdb 54 ----TNFDAFPDKVAIQL 67 usage_00184.pdb 44 DPVRTNFDAFPDKVAIQL 61 usage_00185.pdb 44 DPVRTNFDAFPDKVAIQL 61 usage_00186.pdb 45 DPVRTNFDAFPDKVAIQL 62 usage_00187.pdb 44 DPVRTNFDAFPDKVAIQL 61 usage_00227.pdb 60 DPVRTNFDAFPDKVAIQL 77 usage_00229.pdb 60 DPVRTNFDAFPDKVAIQL 77 usage_00280.pdb 55 ----TNFDAFPDKVAIQL 68 usage_00426.pdb 53 ------FDAFPDKVAIQL 64 usage_00644.pdb 55 ----TNFDAFPDKVAIQL 68 usage_00645.pdb 56 ----TNFDAFPDKVAIQL 69 usage_00647.pdb 56 -F-RTNFDAFPDKVAIQL 71 usage_00652.pdb 54 -----NFDAFPDKVAIQL 66 usage_00716.pdb 55 ----TNFDAFPDKVAIQL 68 usage_00728.pdb 55 ----TNFDAFPDKVAIQL 68 usage_00846.pdb 45 ----TNFDAFPDKVAIQL 58 usage_00847.pdb 47 ----TNFDAFPDKVAIQL 60 usage_00848.pdb 45 ----TNFDAFPDKVAIQL 58 usage_00849.pdb 49 DPVRTNFDAFPDKVAIQL 66 usage_00850.pdb 53 DPVRTNFDAFPDKVAIQL 70 usage_00851.pdb 43 -----NFDAFPDKVAIQL 55 usage_00852.pdb 51 DPVRTNFDAFPDKVAIQL 68 usage_00853.pdb 44 -----NFDAFPDKVAIQL 56 usage_00854.pdb 50 DPVRTNFDAFPDKVAIQL 67 usage_00855.pdb 52 DPVRTNFDAFPDKVAIQL 69 usage_00856.pdb 49 ----TNFDAFPDKVAIQL 62 usage_00857.pdb 45 ----TNFDAFPDKVAIQL 58 usage_00957.pdb 53 DPVRTNFDAFPDKVAIQL 70 usage_01002.pdb 60 DPVRTNFDAFPDKVAIQL 77 usage_01032.pdb 54 -----NFDAFPDKVAIQL 66 usage_01107.pdb 55 ----TNFDAFPDKVAIQL 68 usage_01108.pdb 55 ----TNFDAFPDKVAIQL 68 usage_01117.pdb 55 ----TNFDAFPDKVAIQL 68 FDAFPDKVAIQL #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################