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# Program: MUSTANG v3.2.3: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey,  A. M. Lesk
# Rundate: Thu Jan 21 23:06:53 2021
# Report_file: c_1396_1.html
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#====================================
# Aligned_structures: 8
#   1: usage_00541.pdb
#   2: usage_00955.pdb
#   3: usage_00956.pdb
#   4: usage_01296.pdb
#   5: usage_01303.pdb
#   6: usage_01304.pdb
#   7: usage_01535.pdb
#   8: usage_01785.pdb
#
# Length:        139
# Identity:        5/139 (  3.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     46/139 ( 33.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           60/139 ( 43.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


usage_00541.pdb         1  TDLAIFAVHLSGASSILGAINMITTFLNMRA-------PGMTMHKV-PLFA-------WS   45
usage_00955.pdb         1  -----PRMNNLSYWLYVAGTSLAVASLFAP-GGNGQLGSGIGWVL-YPPLST--SESGYS   51
usage_00956.pdb         1  -----PRMNNLSYWLYVAGTSLAVASLFAP-GGNGQLGSGIGWVL-YPPLST--SESGYS   51
usage_01296.pdb         1  ----FPRMNNLSYWLYVAGTSLAVASLFAP-GGNGQLGSGIGWVL-YPPLST--SESGYS   52
usage_01303.pdb         1  -----PRMNNLSYWLYVAGTSLAVASLFAP-GGNGQLGSGIGWVL-YPPLST--SESGYS   51
usage_01304.pdb         1  -----PRMNNLSYWLYVAGTSLAVASLFAP-GGNGQLGSGIGWVL-YPPLST--SESGYS   51
usage_01535.pdb         1  ----FPRMNNMSFWLLPPSFLLLLASSMVE------AGAGTGWTV-YPPLAGNLAHAGAS   49
usage_01785.pdb         1  -----PRMNNLSYWLYVAGTSLAVASLFAP-GGNGQLGSGIGWVL-YPPLST--SESGYS   51
                                prmnn s wl      l  asl            G gw    Ppl         S

usage_00541.pdb        46  IFVTAWLILLALPVLAGAITMLLTDRNFG----TTFFQPSGGGDP---V----LYQHILW   94
usage_00955.pdb        52  TDLAIFAVHLSGASSILGAINMITTFLNMRAPGMTM---HK-VP-LFAWSIFVTAWLILL  106
usage_00956.pdb        52  TDLAIFAVHLSGASSILGAINMITTFLNMRAPGMTM---HK-VP-LFAWSIFVTAWLILL  106
usage_01296.pdb        53  TDLAIFAVHLSGASSILGAINMITTFLNMRAPGMTM---HK-VP-LFAWSIFVTAWLILL  107
usage_01303.pdb        52  TDLAIFAVHLSGASSILGAINMITTFLNMRAPGMTM---HK-VP-LFAWSIFVTAWLILL  106
usage_01304.pdb        52  TDLAIFAVHLSGASSILGAINMITTFLNMRAPGMTM---HK-VP-LFAWSIFVTAWLILL  106
usage_01535.pdb        50  VDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQ---YQ-TP-LFVWSVMITAVL---  101
usage_01785.pdb        52  TDLAIFAVHLSGASSILGAINMITTFLNMRAPGMTM---HK-VP-LFAWSIFVTAWLILL  106
                            dl if  hL g ssilgain iTt  nm    mt        p    w    ta l   

usage_00541.pdb        95  FFGHPEVYIIV--------  105
usage_00955.pdb       107  ALPVLAGAITMLLTDRNFG  125
usage_00956.pdb       107  ALPVLAGAITMLLTDRNFG  125
usage_01296.pdb       108  ALPVLAGAITMLLTDR---  123
usage_01303.pdb       107  ALPVLAGAITMLLTDR---  122
usage_01304.pdb       107  ALPVLAGAITMLLTDR---  122
usage_01535.pdb            -------------------     
usage_01785.pdb       107  ALPVLAGAITMLLTDRN--  123
                                              


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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