################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:47:10 2021 # Report_file: c_0801_3.html ################################################################################################ #==================================== # Aligned_structures: 12 # 1: usage_00017.pdb # 2: usage_00034.pdb # 3: usage_00035.pdb # 4: usage_00043.pdb # 5: usage_00044.pdb # 6: usage_00063.pdb # 7: usage_00064.pdb # 8: usage_00065.pdb # 9: usage_00073.pdb # 10: usage_00074.pdb # 11: usage_00134.pdb # 12: usage_00137.pdb # # Length: 114 # Identity: 50/114 ( 43.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 53/114 ( 46.5%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 46/114 ( 40.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00017.pdb 1 -TSGEKVGKLSLVDLAGSE----R-------------NINKSLTTLGLVISAL------- 35 usage_00034.pdb 1 -----------LVDLAGSE-----------------ANINKSLTTLGKVISALAEMD--- 29 usage_00035.pdb 1 -----------LVDLAGSE-----------------ANINKSLTTLGKVISALAEMD--- 29 usage_00043.pdb 1 NITTEKVSKISLVDLAGSE-----------------ANINKSLTTLGKVISALAEM---- 39 usage_00044.pdb 1 ---TEKVSKISLVDLAGSE----R--------------INKSLTTLGKVISALAEM---- 35 usage_00063.pdb 1 NITTEKVSKISLVDLAGSERAGT-------RLKEG-ANINKSLTTLGKVISALAEMD--- 49 usage_00064.pdb 1 -ITTEKVSKISLVDLAGSE-------------KEG-ANINKSLTTLGKVISALA------ 39 usage_00065.pdb 1 ---TEKVSKISLVDLAGSE------------------NINKSLTTLGKVISAL--A---- 33 usage_00073.pdb 1 -HDHRITSRINLVDLAGSE----RCSTAGQRLKEG-VSINKSLLTLGKVISALSEQANGK 54 usage_00074.pdb 1 ---HRITSRINLVDLAGSE----RC---GQRLKEG-VSINKSLLTLGKVISALSEQANGK 49 usage_00134.pdb 1 NITTEKVSKISLVDLAGSE-----------------ANINKSLTTLGKVISALAEM---- 39 usage_00137.pdb 1 NITTEKVSKISLVDLAGSE----------------RANINKSLTTLGKVISALAEMD--- 41 LVDLAGSE INKSL TLGkVISAL usage_00017.pdb 36 ---VPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRA--- 83 usage_00034.pdb 30 --FIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK-- 79 usage_00035.pdb 30 --FIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK-- 79 usage_00043.pdb 40 --FIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQ- 90 usage_00044.pdb 36 --FIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 87 usage_00063.pdb 50 ---IPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRA--- 97 usage_00064.pdb 40 ---IPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADR---- 86 usage_00065.pdb 34 --FIPYRDSVLTWLLREN--GNSRTAMVAALSPADINYDETLSTLRYADRAKQI 83 usage_00073.pdb 55 RVFIPYRESTLTWLLKESLGGNSKTAMIATVSPAASNIEETLSTLRYATQ---- 104 usage_00074.pdb 50 RVFIPYRESTLTWLLKESLGGNSKTAMIATVSPAASNIEETLSTLRYATQ---- 99 usage_00134.pdb 40 --FIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQ- 90 usage_00137.pdb 42 --FIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK-- 91 iPYR S LTWLL e GNS TAM A SPA N ETLSTLRYA #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################