################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:09:21 2021 # Report_file: c_0542_1.html ################################################################################################ #==================================== # Aligned_structures: 14 # 1: usage_00003.pdb # 2: usage_00019.pdb # 3: usage_00020.pdb # 4: usage_00021.pdb # 5: usage_00022.pdb # 6: usage_00023.pdb # 7: usage_00024.pdb # 8: usage_00025.pdb # 9: usage_00026.pdb # 10: usage_00073.pdb # 11: usage_00074.pdb # 12: usage_00156.pdb # 13: usage_00180.pdb # 14: usage_00181.pdb # # Length: 193 # Identity: 12/193 ( 6.2%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 45/193 ( 23.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 72/193 ( 37.3%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00003.pdb 1 SIIEFWLEAKATIDRLIEQFLNSNR-DWDLVDISSYILK-DGKRFRGTLNMFFTVALGGD 58 usage_00019.pdb 1 ------ESDMAAVSTLIRERMA-SKHAPRIPEVTAHLV-----RLRPMLTLAAAHLCGYD 48 usage_00020.pdb 1 ------EPDMLAVNQLIQKQVN-SD-VSLINQLGFYIVNSGGKRLRPLLTVLAARALNIQ 52 usage_00021.pdb 1 ------EPDMLAVNQLIQKQVN-SD-VSLINQLGFYIVNSGGKRLRPLLTVLAARALNIQ 52 usage_00022.pdb 1 ------EPDMLAVNQLIQKQVN-SD-VSLINQLGFYIVNSGGKRLRPLLTVLAARALNIQ 52 usage_00023.pdb 1 ------EPDMLAVNQLIQKQVN-SD-VSLINQLGFYIVNS-GKRLRPLLTVLAARALNIQ 51 usage_00024.pdb 1 ------EPDMLAVNQLIQKQVN-SD-VSLINQLGFYIVNSGGKRLRPLLTVLAARALNIQ 52 usage_00025.pdb 1 -----AEPDMLAVNQLIQKQVN-SD-VSLINQLGFYIVNSGGKRLRPLLTVLAARALNIQ 53 usage_00026.pdb 1 ------EPDMLAVNQLIQKQVN-SD-VSLINQLGFYIVNSGGKRLRPLLTVLAARALNIQ 52 usage_00073.pdb 1 -----TAQDMAGVNAAILEQLN-SD-VQLINQLGYYIVSGGGKRIRPMIAVLAARAVGYE 53 usage_00074.pdb 1 ---------MAGVNAAILEQLN-SD-VQLINQLGYYIVSGGGKRIRPMIAVLAARAVGYE 49 usage_00156.pdb 1 ------AEDMAAVNALIRERMS-SEHAPRIPEVTAHLIEAGGKRLRPMLTLAAARLVGYG 53 usage_00180.pdb 1 ----------AGVNRLITDRMQ-SD-VAIIPALAEHLIAAGGKRLRPLMTVAAARLAGAD 48 usage_00181.pdb 1 -----AEADMAGVNRLITDRMQ-SD-VAIIPALAEHLIAAGGKRLRPLMTVAAARLAGAD 53 v I s i R Rp aa usage_00003.pdb 59 IKDSYGGALAIEILHSASLALDDIV----D--LDATRRGDKAAWVVYGNRKVIFITNYLI 112 usage_00019.pdb 49 GPFHINLAATVEFIHTATLLHDDV------------------------NKSSVLVGDYLF 84 usage_00020.pdb 53 TEQHHTLAAIIEFIHTATLLHDDVV----D--ESTMRRGRETANEVFGNQASVLVGDFLY 106 usage_00021.pdb 53 TEQHHTLAAIIEFIHTATLLHDDVV----DE----------TANEVFGNQASVLVGDFLY 98 usage_00022.pdb 53 TEQHHTLAAIIEFIHTATLLHDDVV----DE----------TANEVFGNQASVLVGDFLY 98 usage_00023.pdb 52 TEQHHTLAAIIEFIHTATLLHDDVV----DE----------TANEVFGNQASVLVGDFLY 97 usage_00024.pdb 53 TEQHHTLAAIIEFIHTATLLHDDVV----DE----------TANEVFGNQASVLVGDFLY 98 usage_00025.pdb 54 TEQHHTLAAIIEFIHTATLLHDDVV----D--ESTMRRGRETANEVFGNQASVLVGDFLY 107 usage_00026.pdb 53 TEQHHTLAAIIEFIHTATLLHDDVV----D--ESTMRRGRETANEVFGNQASVLVGDFLY 106 usage_00073.pdb 54 GNAHVTIAALIEFIHTATLLHDDVV----D--ESDMRRGKATANAAFGNAASVLVGDFIY 107 usage_00074.pdb 50 GNAHVTIAALIEFIHTATLLHDDVV----DES--------------FGNAASVLVGDFIY 91 usage_00156.pdb 54 GPFHVHLAATVEFIHTATLLHDDVV----D--ESRQRRGRPTANLLWDNKSSVLVGDYLF 107 usage_00180.pdb 49 NDHFQKLAAAVEFIHTATLLHDDVVVAAH---------------LIWGGAQSVLVGDFLF 93 usage_00181.pdb 54 NDHFQKLAAAVEFIHTATLLHDDVV----D--GSQLRRGKVAAHLIWGGAQSVLVGDFLF 107 Aa EfiHtAtLlhDDv svlvgd usage_00003.pdb 113 PTALRIIQTSYGDDALNTSIELEKDTSVGALRDMY---DNS------DYIRTIELK---- 159 usage_00019.pdb 85 SRSFQLMVETGSLRVLDILANASATIAEGEVLQLTASQN--LATTEEVYLQVVRG----- 137 usage_00020.pdb 107 TRSFQMMVTLDSMRVMQILSDATNVIAEGEVLQLMNCND--PDTTEESYMEVIYSKTARL 164 usage_00021.pdb 99 TRSFQMMVTLDSMRVMQILSDATNVIAEGEVLQLMNCND--PDTTEESYMEVIYS----- 151 usage_00022.pdb 99 TRSFQMMVTLDSMRVMQILSDATNVIAEGEVLQLMNCND--PDTTEESYMEVIYSKTA-- 154 usage_00023.pdb 98 TRSFQMMVTLDSMRVMQILSDATNVIAEGEVLQLMNCND--PDTTEESYMEVIY------ 149 usage_00024.pdb 99 TRSFQMMVTLDSMRVMQILSDATNVIAEGEVLQLMNCND--PDTTEESYMEVIYS----- 151 usage_00025.pdb 108 TRSFQMMVTLDSMRVMQILSDATNVIAEGEVLQLMNCND--PDTTEESYMEVIY------ 159 usage_00026.pdb 107 TRSFQMMVTLDSMRVMQILSDATNVIAEGEVLQLMNCND--PDTTEESYMEVIYS----- 159 usage_00073.pdb 108 TRAFQMMTSLGSLKVLEVMSEAVNVIAEGEVLQLM--------ITEENYMRVIYSK---- 155 usage_00074.pdb 92 TRAFQMMTSLGSLKVLEVMSEAVNVIAEGEVLQLMNVND--PDITEENYMRVIYSKTARL 149 usage_00156.pdb 108 ARSFQLMTDTGNMRVMEILANASAVIAEGEVLQLTAAQN--LATTEDIYLRVIRGKTA-- 163 usage_00180.pdb 94 ARAFELMVETNSMKALEILARASRVIAEGEVLQLMRSHD--LNLSQAVYLEIIQAKTA-- 149 usage_00181.pdb 108 ARAFELMVETNSMKALEILARASRVIAEGEVLQLMRSHD--LNLSQAVYLEIIQAKTAEL 165 r f m a iaeGevlql Y i usage_00003.pdb ------------- usage_00019.pdb ------------- usage_00020.pdb 165 FEAATLLAGVLTK 177 usage_00021.pdb ------------- usage_00022.pdb ------------- usage_00023.pdb ------------- usage_00024.pdb ------------- usage_00025.pdb ------------- usage_00026.pdb ------------- usage_00073.pdb ------------- usage_00074.pdb 150 FEAAA-------- 154 usage_00156.pdb ------------- usage_00180.pdb ------------- usage_00181.pdb 166 FAAASEAGAVSAG 178 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################