################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 03:26:44 2021 # Report_file: c_1386_89.html ################################################################################################ #==================================== # Aligned_structures: 26 # 1: usage_00238.pdb # 2: usage_00239.pdb # 3: usage_00456.pdb # 4: usage_00457.pdb # 5: usage_00458.pdb # 6: usage_00459.pdb # 7: usage_00460.pdb # 8: usage_00492.pdb # 9: usage_00523.pdb # 10: usage_00524.pdb # 11: usage_00525.pdb # 12: usage_00526.pdb # 13: usage_00528.pdb # 14: usage_00530.pdb # 15: usage_00804.pdb # 16: usage_00805.pdb # 17: usage_00879.pdb # 18: usage_00880.pdb # 19: usage_00881.pdb # 20: usage_00882.pdb # 21: usage_01009.pdb # 22: usage_01034.pdb # 23: usage_01068.pdb # 24: usage_01248.pdb # 25: usage_01323.pdb # 26: usage_01324.pdb # # Length: 73 # Identity: 2/ 73 ( 2.7%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 14/ 73 ( 19.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 55/ 73 ( 75.3%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00238.pdb 1 ---------MVNHIVAATRKNTMQAVCLAATLQ--QTAMFEMGDALGPF--E-------- 39 usage_00239.pdb 1 ---------MVNHIVAATRKNTMQAVCLAATLQ--QTAMFEMGDALGPF--E-------- 39 usage_00456.pdb 1 ----------VNHVVAATLKNTLQAAALSTILE--QTAMFEMGDAVGAF--ERMHLLGLA 46 usage_00457.pdb 1 ----------VNHVVAATLKNTLQAAALSTILE--QTAMFEMGDAVGAF--E-------- 38 usage_00458.pdb 1 ----------VNHVVAATLKNTLQAAALSTILE--QTAMFEMGDAVGAF--ERMHLLGLA 46 usage_00459.pdb 1 ----------VNHVVAATLKNTLQAAALSTILE--QTAMFEMGDAVGAF--ERMHLLGLA 46 usage_00460.pdb 1 ----------VNHVVAATLKNTLQAAALSTILE--QTAMFEMGDAVGAF--ERMHLLGLA 46 usage_00492.pdb 1 ----------VNHVVAATLKNTLQAAALSTILE--QTAMFEMGDAVGAF--ERMHLLGLA 46 usage_00523.pdb 1 ----------VNHVVATTLKNTLQAAALSTILE--QTAMFEMGDAVGAF--ERMHLLGLA 46 usage_00524.pdb 1 ----------VNHVVATTLKNTLQAAALSTILE--QTAMFEMGDAVGAF--ERMHLLGLA 46 usage_00525.pdb 1 ----------ANHVVAITRKNTLNASALSSILE--QTAMFETGDAVGAF--E-------- 38 usage_00526.pdb 1 ----------ANHVVAITRKNTLNASALSSILE--QTAMFETGDAVGAF--E-------- 38 usage_00528.pdb 1 ----------ANHVVAITRKNTLNASALSSILE--QTAMFETGDAVGAF--E-------- 38 usage_00530.pdb 1 ----------ANHVVAITRKNTLNASALSSILE--QTAMFETGDAVGAF--E-------- 38 usage_00804.pdb 1 ----------VNHVVAATLKNTLQAAALSTILE--QTAMFEMGDAVGAF--ERMHLLGLA 46 usage_00805.pdb 1 -----------NHVVAATLKNTLQAAALSTILE--QTAMFEMGDAVGAF--ERMHLLGLA 45 usage_00879.pdb 1 ----------VNHVVAATLKNTLQAAALSTILE--QTAMFEMGDAVGAF--ERMHLLGLA 46 usage_00880.pdb 1 ----------VNHVVAATLKNTLQAAALSTILE--QTAMFEMGDAVGAF--ERMHLLGLA 46 usage_00881.pdb 1 ----------VNHVVAATLKNTLQAAALSTILE--QTAMFEMGDAVGAF--ERMHLLGLA 46 usage_00882.pdb 1 ----------VNHVVAATLKNTLQAAALSTILE--QTAMFEMGDAVGAF--ERMHLLGLA 46 usage_01009.pdb 1 ----------VNHVVAATLKNTLQAAALSTILE--QTAMFEMGDAVGAF--ERMHLLGLA 46 usage_01034.pdb 1 STIGKAFEA-TVRGAKRMAV-------------LGDTAWDFGS------VGGALNSLGKG 40 usage_01068.pdb 1 ----------VNHVVAATLKNTLQAAALSTILE--QTAMFEMGDAVGAF--ERMHLLGLA 46 usage_01248.pdb 1 ----------VNHVVAATLKNTLQAAALSTILE--QTAMFEMGDAVGAF--ERMHLLGLA 46 usage_01323.pdb 1 ----------VNHVVAATLKNTLQAAALSTILE--QTAMFEMGDAVGAF--ERMHLLGLA 46 usage_01324.pdb 1 ----------VNHVVAATLKNTLQAAALSTILE--QTAMFEMGDAVGAF--ERMHLLGLA 46 nh va t k qTAmfe g e usage_00238.pdb ------------- usage_00239.pdb ------------- usage_00456.pdb 47 YQGMN-------- 51 usage_00457.pdb ------------- usage_00458.pdb 47 YQGMN-------- 51 usage_00459.pdb 47 YQGMN-------- 51 usage_00460.pdb 47 YQGMN-------- 51 usage_00492.pdb 47 YQGMN-------- 51 usage_00523.pdb 47 YQGMN-------- 51 usage_00524.pdb 47 YQGMN-------- 51 usage_00525.pdb ------------- usage_00526.pdb ------------- usage_00528.pdb ------------- usage_00530.pdb ------------- usage_00804.pdb 47 YQGMN-------- 51 usage_00805.pdb 46 YQGMN-------- 50 usage_00879.pdb 47 YQGMN-------- 51 usage_00880.pdb 47 YQGMN-------- 51 usage_00881.pdb 47 YQGMN-------- 51 usage_00882.pdb 47 YQGMN-------- 51 usage_01009.pdb 47 YQGMN-------- 51 usage_01034.pdb 41 IHQIFGAAFKSLF 53 usage_01068.pdb 47 YQGMN-------- 51 usage_01248.pdb 47 YQGMN-------- 51 usage_01323.pdb 47 YQGMN-------- 51 usage_01324.pdb 47 YQGMN-------- 51 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################