################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 02:46:46 2021 # Report_file: c_0471_10.html ################################################################################################ #==================================== # Aligned_structures: 22 # 1: usage_00004.pdb # 2: usage_00006.pdb # 3: usage_00007.pdb # 4: usage_00008.pdb # 5: usage_00009.pdb # 6: usage_00010.pdb # 7: usage_00011.pdb # 8: usage_00012.pdb # 9: usage_00013.pdb # 10: usage_00014.pdb # 11: usage_00015.pdb # 12: usage_00016.pdb # 13: usage_00017.pdb # 14: usage_00029.pdb # 15: usage_00030.pdb # 16: usage_00031.pdb # 17: usage_00110.pdb # 18: usage_00111.pdb # 19: usage_00112.pdb # 20: usage_00130.pdb # 21: usage_00142.pdb # 22: usage_00161.pdb # # Length: 116 # Identity: 7/116 ( 6.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 27/116 ( 23.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 40/116 ( 34.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00004.pdb 1 ----KGVLLYGEPGVGKTLLAKAIAGEAH---VPFISVSGSDF---V-GV---GAARVRD 46 usage_00006.pdb 1 ARMPKGILLVGPPGTGKTLLARAVAGEAN---VPFFHISGSDFVELFVGV---GAARVRD 54 usage_00007.pdb 1 ARMPKGILLVGPPGTGKTLLARAVAGEAN---VPFFHISGSDFVELFVGV---GAARVRD 54 usage_00008.pdb 1 ARMPKGILLVGPPGTGKTLLARAVAGEAN---VPFFHISGSDFVELFVGV---GAARVRD 54 usage_00009.pdb 1 ARMPKGILLVGPPGTGKTLLARAVAGEAN---VPFFHISGSDFVELFVGV---GAARVRD 54 usage_00010.pdb 1 ----KGILLVGPPGTGKTLLARAVAGEAN---VPFFHISGSDFVELFVGV---GAARVRD 50 usage_00011.pdb 1 ----KGILLVGPPGTGKTLLARAVAGEAN---VPFFHISGSDFVELFVGV---GAARVRD 50 usage_00012.pdb 1 ARMPKGILLVGPPGTGKTLLARAVAGEAN---VPFFHISGSDFVELFVGV---GAARVRD 54 usage_00013.pdb 1 ARMPKGILLVGPPGTGKTLLARAVAGEAN---VPFFHISGSDFVELFVGV---GAARVRD 54 usage_00014.pdb 1 ARMPKGILLVGPPGTGKTLLARAVAGEAN---VPFFHISGSDFVELFVGV---GAARVRD 54 usage_00015.pdb 1 ARMPKGILLVGPPGTGKTLLARAVAGEAN---VPFFHISGSDFVELFVGV---GAARVRD 54 usage_00016.pdb 1 ----KGILLVGPPGTGKTLLARAVAGEAN---VPFFHISGSDFVELFVGV---GAARVRD 50 usage_00017.pdb 1 ARMPKGILLVGPPGTGKTLLARAVAGEAN---VPFFHISGSDFVELFVGV---GAARVRD 54 usage_00029.pdb 1 ----KGVLLVGPPGTGKTLLAKAVAGEAH---VPFFSMGGSSFIEMFVGL---GASRVRD 50 usage_00030.pdb 1 ----KGVLLVGPPGTGKTLLAKAVAGEAH---VPFFSMGGSSFIEMFVGL---GASRVRD 50 usage_00031.pdb 1 AKIPKGVLLVGPPGTGKTLLAKAVAGEAH---VPFFSMGGSSFIEMFVGL---GASRVRD 54 usage_00110.pdb 1 ----KGILLVGPPGTGATLLARAVAGEAN---VPFFHISGSDFVELFVGV---GAARVRD 50 usage_00111.pdb 1 ARMPKGILLVGPPGTGATLLARAVAGEAN---VPFFHISGSDFVELFVGV---GAARVRD 54 usage_00112.pdb 1 ARMPKGILLVGPPGTGATLLARAVAGEAN---VPFFHISGSDFVELFVGV---GAARVRD 54 usage_00130.pdb 1 ----QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH-------ASISTALLEG 49 usage_00142.pdb 1 ----KGILLFGPPGTGKTLIGKCIASQSG---ATFFSISASSLTSKWVGE---GEKMVRA 50 usage_00161.pdb 1 -----GALLLGPPGCGKTLLAKAVATEAQ---VPFLAMAGAEFVEVIGGL---GAARVRS 49 g lL Gppg G Tll a a a f g vr usage_00004.pdb 47 LFETAKKHAPCMIFIDEIDAVGR-DEREQTLNQLLVEMDGFD--TSDGIIVIAATN 99 usage_00006.pdb 55 LFAQAKAHAPCIVFIDEIDAVGRHDEREQTLNQLLVEMDGFD--SKEGIIVMAAT- 107 usage_00007.pdb 55 LFAQAKAHAPCIVFIDEIDAVGRD-EREQTLNQLLVEMDGFD--SKEGIIVMAAT- 106 usage_00008.pdb 55 LFAQAKAHAPCIVFIDEIDAVGR---EQ-TLNQLLVEMDGFD--SKEGIIVMAAT- 103 usage_00009.pdb 55 LFAQAKAHAPCIVFIDEIDAVG---EREQTLNQLLVEMDGFD--SKEGIIVMAAT- 104 usage_00010.pdb 51 LFAQAKAHAPCIVFIDEIDAVGRH-EREQTLNQLLVEMDGFD--SKEGIIVMAAT- 102 usage_00011.pdb 51 LFAQAKAHAPCIVFIDEIDAVGRD-EREQTLNQLLVEMDGFD--SKEGIIVMAAT- 102 usage_00012.pdb 55 LFAQAKAHAPCIVFIDEIDAVGRHDEREQTLNQLLVEMDGFD--SKEGIIVMAAT- 107 usage_00013.pdb 55 LFAQAKAHAPCIVFIDEIDAVGRD-EREQTLNQLLVEMDGFD--SKEGIIVMAAT- 106 usage_00014.pdb 55 LFAQAKAHAPCIVFIDEIDAVGR---EQ-TLNQLLVEMDGFD--SKEGIIVMAAT- 103 usage_00015.pdb 55 LFAQAKAHAPCIVFIDEIDAVG---EREQTLNQLLVEMDGFD--SKEGIIVMAAT- 104 usage_00016.pdb 51 LFAQAKAHAPCIVFIDEIDAVGRH-EREQTLNQLLVEMDGFD--SKEGIIVMAAT- 102 usage_00017.pdb 55 LFAQAKAHAPCIVFIDEIDAVGRD-EREQTLNQLLVEMDGFD--SKEGIIVMAAT- 106 usage_00029.pdb 51 LFETAKKQAPSIIFIDEIDAIGKNDEREQTLNQLLAEMDGFGS-ENAPVIVLAATN 105 usage_00030.pdb 51 LFETAKKQAPSIIFIDEIDAIGKNDEREQTLNQLLAEMDGFGS-ENAPVIVLAAT- 104 usage_00031.pdb 55 LFETAKKQAPSIIFIDEIDAIGKNDEREQTLNQLLAEMDGFGS-ENAPVIVLAATN 109 usage_00110.pdb 51 LFAQAKAHAPCIVFIDEIDAVGRHDEREQTLNQLLVEMDGFD--SKEGIIVMAATN 104 usage_00111.pdb 55 LFAQAKAHAPCIVFIDEIDAVGRHDEREQTLNQLLVEMDGFD--SKEGIIVMAA-- 106 usage_00112.pdb 55 LFAQAKAHAPCIVFIDEIDAVGRHDEREQTLNQLLVEMDGFD--SKEGIIVMAAT- 107 usage_00130.pdb 50 L----E-QF-DLICIDDVDAVAG---HPLWEEAIFDLYNRVA-EQ-KRGSLIVSAS 94 usage_00142.pdb 51 LFAVARCQQPAVIFIDEIDSLLSQESSRRIKTEFLVQLDG----SEDRILVVGAT- 101 usage_00161.pdb 50 LFKEARARAPCIVYIDEI--------EQ-TLNQLLVEMDGMG--TTDHVIVLAST- 93 L IDei l dg v #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################