################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 00:15:45 2021 # Report_file: c_0214_4.html ################################################################################################ #==================================== # Aligned_structures: 10 # 1: usage_00001.pdb # 2: usage_00006.pdb # 3: usage_00007.pdb # 4: usage_00008.pdb # 5: usage_00009.pdb # 6: usage_00010.pdb # 7: usage_00011.pdb # 8: usage_00012.pdb # 9: usage_00021.pdb # 10: usage_00022.pdb # # Length: 140 # Identity: 23/140 ( 16.4%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 29/140 ( 20.7%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 40/140 ( 28.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00001.pdb 1 ---LIEYYVVDSWGTY--RP----TGTYKGTVKSDGGTYDIYTTTRYNAPS-IDGDRTTF 50 usage_00006.pdb 1 GVPLVEYYIIEDWVDW--VP----DA-QGKMVTIDGAQYKIFQMDHT-GPTINGG-SETF 51 usage_00007.pdb 1 ---LVEFYIVDSWGTW--RPP---GAESKGTIHVDGGTYEIYETTRVQQPS-IEG-TATF 50 usage_00008.pdb 1 ---LVEFYIVDSWGTW--RPP---GAESKGTIHVDGGTYEIYETTRVQQPS-IEG-TATF 50 usage_00009.pdb 1 ---LVEFYIVDSWGTW--RPP---GGTPKGTINVDGGTYQIYETTRYNQPS-IKG-TATF 50 usage_00010.pdb 1 ---LVEFYIVDSWGTW--RPP---GGTPKGTINVDGGTYQIYETTRYNQPS-IKG-TATF 50 usage_00011.pdb 1 ---LVEFYIVDSWGTW--RPP---GGTPKGTINVDGGTYQIYETTRYNQPS-IKG-TATF 50 usage_00012.pdb 1 GVPLVEYYIIEDWVDW--VP----DA-QGKMVTIDGAQYKIFQMDHT-GPTINGG-SETF 51 usage_00021.pdb 1 ---LVEYYIVDNWLSPFP-PGDWVGNKKHGSFTIDGAQYTVYENTRT-GPS-IDG-DTTF 53 usage_00022.pdb 1 ---LVAYYIVDNWLSPFP-PGDWVGNKKHGSFTIDGAQYTVYENTRT-GPS-IDG-DTTF 53 Lve Yi W P DG Y P G TF usage_00001.pdb 51 TQYWSVRQSKRPTGSNATITFSNHVNAWKSHGMNLGSNWAYQVMATEGYQ--SSGSSNVT 108 usage_00006.pdb 52 KQYFSVRQQKRT---SGHITVSDHFKEWAKQGWGIG-NLYEVALNAEGWQ--SSGVADVT 105 usage_00007.pdb 51 QQYWSVRTDKRT---SGTISVSEHFHAWEAHGMPMG-NMYEVALTVEGWQ--SSGSADVY 104 usage_00008.pdb 51 QQYWSVRTDKRT---SGTISVSEHFHAWEAHGMPMG-NMYEVALTVEGWQ--SSGSADVY 104 usage_00009.pdb 51 QQYWSVRTSKRT---SGTISVSEHFRAWESLGMNMG-NMYEVALTVEGYQ--SSGSANVY 104 usage_00010.pdb 51 QQYWSVRTSKRT---SGTISVSEHFRAWESLGMNMG-NMYEVALTVEGYQ--SSGSANVY 104 usage_00011.pdb 51 QQYWSVRTSKRT---SGTISVSEHFRAWESLGMNMG-NMYEVALTVEGYQ--SSGSANVY 104 usage_00012.pdb 52 KQYFSVRQQKRT---SGHITVSDHFKEWAKQGWGIG-NLYEVALNAEGWQ--SSGVADVT 105 usage_00021.pdb 54 NQYFSIRQQARD---CGTIDISAHFDQWEKLGMTMG-KLHEAKVLGEAGNVNGGASGTAD 109 usage_00022.pdb 54 NQYFSIRQQARD---CGTIDISAHFDQWEKLGMTMG-KLHEAKVLGEAGNVNGGASGTAD 109 QY S R R g I S Hf W G G e E usage_00001.pdb 109 VWG----------------- 111 usage_00006.pdb -------------------- usage_00007.pdb 105 RNNLT--------------- 109 usage_00008.pdb 105 RNNLT--------------- 109 usage_00009.pdb 105 SNTLTIGGQSGGEQATRVE- 123 usage_00010.pdb -------------------- usage_00011.pdb 105 SNTLTIGATRV--------E 116 usage_00012.pdb -------------------- usage_00021.pdb 110 FP------------------ 111 usage_00022.pdb 110 FP------------------ 111 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################