################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:29:56 2021 # Report_file: c_0047_4.html ################################################################################################ #==================================== # Aligned_structures: 16 # 1: usage_00002.pdb # 2: usage_00003.pdb # 3: usage_00017.pdb # 4: usage_00018.pdb # 5: usage_00023.pdb # 6: usage_00025.pdb # 7: usage_00026.pdb # 8: usage_00027.pdb # 9: usage_00028.pdb # 10: usage_00033.pdb # 11: usage_00062.pdb # 12: usage_00070.pdb # 13: usage_00091.pdb # 14: usage_00092.pdb # 15: usage_00093.pdb # 16: usage_00111.pdb # # Length: 291 # Identity: 14/291 ( 4.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 27/291 ( 9.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 95/291 ( 32.6%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00002.pdb 1 KTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTG 60 usage_00003.pdb 1 RKALITGASRGIGRAIALRLAEDGFALAIHYGQ-----------NREKAEEVAEEARRRG 49 usage_00017.pdb 1 KNVLITGASKGIGAEIAKTLASMGLKVWINYRS-----------NAEVADALKNELEEKG 49 usage_00018.pdb 1 KNVLITGASKGIGAEIAKTLASMGLKVWINYRS-----------NAEVADALKNELEEKG 49 usage_00023.pdb 1 -VVVVTGASRGIGKAIALSLGKAGCKVLVNYAR-----------SAKAAEEVSKQIEAYG 48 usage_00025.pdb 1 KVALVTGASRGIGRAIAIDLAKQGANVVVNYAG-----------NEQKANEVVDEIKKLG 49 usage_00026.pdb 1 KVALVTGASRGIGRAIAIDLAKQGANVVVNYAG-----------NEQKANEVVDEIKKLG 49 usage_00027.pdb 1 KVALVTGASRGIGRAIAIDLAKQGANVVVNYAG-----------NEQKANEVVDEIKKLG 49 usage_00028.pdb 1 KVALVTGASRGIGRAIAIDLAKQGANVVVNYAG-----------NEQKANEVVDEIKKLG 49 usage_00033.pdb 1 RHALITAGTKGLGKQVTEKLLAKGYSVTVTYHS-----------DTTAMETMKETYKD-V 48 usage_00062.pdb 1 EVALVTGATSGIGLEIARRLGKEGLRVFVCAR------------GEEGLRTTLKELREAG 48 usage_00070.pdb 1 KVALVTGASRGIGQAIALELGRLGAVVIGTATS-----------A-SGAEKIAETLKANG 48 usage_00091.pdb 1 -LALVTGAGSGIGRAVSVRLAGEGATVAACDL------------DRAAAQETVRLL--GR 45 usage_00092.pdb 1 RIALVTGASRGIGRAIALELAAAGAKVAVNYAS-----------SAGAADEVVAAIAAAG 49 usage_00093.pdb 1 RIALVTGASRGIGRAIALELAAAGAKVAVNYAS-----------SAGAADEVVAAIAAAG 49 usage_00111.pdb 1 KTALVTGSSRGIGRATAIRLAREGALVAVHCSR-----------NREAADETVATIEKEG 49 l Tg G G L G usage_00002.pdb 61 -R-RCISAKVDVKDRAALESFVAEAEDTLG------GIDIAITNAGI-STIALL--PEVE 109 usage_00003.pdb 50 -SPLVAVLGANLLEAEAATALVHQAAEVLG------GLDTLVNNAGI-TRDTLL--VRMK 99 usage_00017.pdb 50 -Y-KAAVIKFDAASESDFIEAIQTIVQSDG------GLSYLVNNAGV-VRDKLA--IKMK 98 usage_00018.pdb 50 -Y-KAAVIKFDAASESDFIEAIQTIVQSDG------GLSYLVNNAGV-VRDKLA--IKMK 98 usage_00023.pdb 49 -G-QAITFGGDVSKEADVEAMMKTAIDAWG------TIDVVVNNAGI-TRDTLL--IRMK 97 usage_00025.pdb 50 -S-DAIAVRADVANAEDVTNMVKQTVDVFG------QVDILVNNAGV-TKDNLL--MRMK 98 usage_00026.pdb 50 -S-DAIAVRADVANAEDVTNMVKQTVDVFG------QVDILVNNAGV-TKDNLL--MRMK 98 usage_00027.pdb 50 -S-DAIAVRADVANAEDVTNMVKQTVDVFG------QVDILVNNAGV-TKDNLL--MRMK 98 usage_00028.pdb 50 -S-DAIAVRADVANAEDVTNMVKQTVDVFG------QVDILVNNAGV-TKDNLL--MRMK 98 usage_00033.pdb 49 EE-RLQFVQADVTKKEDLHKIVEEAMSHFG------KIDFLINNAGP-YVFERKKLVDYE 100 usage_00062.pdb 49 -V-EADGRTCDVRSVPEIEALVAAVVERYG------PVDVLVNNAGR-PGGGAT--AELA 97 usage_00070.pdb 49 -V-EGAGLVLDVSSDESVAATLEHIQQHLG------QPLIVVNNAGID------------ 88 usage_00091.pdb 46 -G-NHAAFQADVSEARAARCLLEQVQACFS-----RPPSVVVSCAGI-TQDEFL--LHMS 95 usage_00092.pdb 50 -G-EAFAVKADVSQESEVEALFAAVIERWG------RLDVLVNNAGI-TRDTLL--LRMK 98 usage_00093.pdb 50 -G-EAFAVKADVSQESEVEALFAAVIERWG------RLDVLVNNAGI-TRDTLL--LRMK 98 usage_00111.pdb 50 -G-RAFSVLAELGVPGDVHELFLALERGLKERTDATTLDILVNNAGV-MGGVAP--EEVT 104 nAG usage_00002.pdb 110 SAQWDEVIGTNLTGTFNTIAAVAP--GMIK-RNYGRIVTVSSML------G--HSANFAQ 158 usage_00003.pdb 100 DEDWEAVLEANLSAVFRTTREAVK--LMMK-ARFGRIVNITSVV------G--ILGNPGQ 148 usage_00017.pdb 99 TEDFHHVIDNNLTSAFIGCREALK--VMSK-SRFGSVVNVASII------G--ERGNMGQ 147 usage_00018.pdb 99 TEDFHHVIDNNLTSAFIGCREALK--VMSK-SRFGSVVNVASII------G--ERGNMGQ 147 usage_00023.pdb 98 KSQWDEVIDLNLTGVFLCTQAATK--IMMK-KRKGRIINIASVV------G--LIGNIGQ 146 usage_00025.pdb 99 EEEWDTVINTNLKGVFLCTKAVSR--FMMR-QRHGRIVNIASVV------G--VTGNPGQ 147 usage_00026.pdb 99 EEEWDTVINTNLKGVFLCTKAVSR--FMMR-QRHGRIVNIASVV------G--VTGNPGQ 147 usage_00027.pdb 99 EEEWDTVINTNLKGVFLCTKAVSR--FMMR-QRHGRIVNIASVV------G--VTGNPGQ 147 usage_00028.pdb 99 EEEWDTVINTNLKGVFLCTKAVSR--FMMR-QRHGRIVNIASVV------G--VTGNPGQ 147 usage_00033.pdb 101 EDEWNEMIQGNLTAVFHLLKLVVP--VMRK-QNFGRIINYGFQG------ADSAPGWIYR 151 usage_00062.pdb 98 DELWLDVVETNLTGVFRVTKQVLKAGGMLE-RGTGRIVNIASTG------G--KQGVVHA 148 usage_00070.pdb 89 --EWFDVVNTNLNSLYRLSKAVLR--GMTK-ARWGRIINIGSVVGAMGNA--------GQ 135 usage_00091.pdb 96 EDDWDKVIAVNLKGTFLVTQAAAQ--ALVSNGCRGSIINISSIV------G--KVGNVGQ 145 usage_00092.pdb 99 RDDWQSVLDLNLGGVFLCSRAAAK--IMLK-QRSGRIINIASVV------G--EMGNPGQ 147 usage_00093.pdb 99 RDDWQSVLDLNLGGVFLCSRAAAK--IMLK-QRSGRIINIASVV------G--EMGNPGQ 147 usage_00111.pdb 105 PELFDRLVAVNAKAPFFIVQRALT--LI---PDGGRIINISSGL------T--RFANPQE 151 Nl f G n s usage_00002.pdb 159 ASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMT--HNDFVFGK--PT--LK- 211 usage_00003.pdb 149 ANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIET-EM--TE-------RL---PQ- 194 usage_00017.pdb 148 TNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIET---------------------- 185 usage_00018.pdb 148 TNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIET---------------------- 185 usage_00023.pdb 147 ANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIAS-DM--TA-------KL---GE- 192 usage_00025.pdb 148 ANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIAT-DM--TD-------VL---DE- 193 usage_00026.pdb 148 ANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIAT-DM--TD-------VL---DE- 193 usage_00027.pdb 148 ANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIAT-DM--TD-------VL---DE- 193 usage_00028.pdb 148 ANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIAT-DM--TD-------VL---DE- 193 usage_00033.pdb 152 SAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGE--------------------- 190 usage_00062.pdb 149 APYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMA--A--S----VRE-V--ST 197 usage_00070.pdb 136 TNYAAAKAGLEGFTRALAREVGSRAITVNAVAPGFIDTDMT--RE--------L---PE- 181 usage_00091.pdb 146 TNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATP-------------MT--QPQ- 189 usage_00092.pdb 148 ANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIAT-DMTSEL--------------- 191 usage_00093.pdb 148 ANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDM-------------------- 187 usage_00111.pdb 152 VAYAMTKGAMDQLTLHFAKHLGSRNITVNSVGPGITNNGTP--V--------FD---NP- 197 y K g a I N PG usage_00002.pdb 212 D-VES-V-FASLHLQYA-PFLKPEEVTRAVLFLVDEASSHITG-T-VLPID 256 usage_00003.pdb 195 E-VKE-A-YLKQIPAG--RFGRPEEVAEAVAFLVSEKAGYITG-Q-TLCVD 238 usage_00017.pdb 186 ---KA-D-YVKNIPLN--RLGSAKEVAEAVAFLLSDHSSYITG-E-TLKVN 227 usage_00018.pdb 186 ---DA-D-YVKNIPLN--RLGSAKEVAEAVAFLLSDHSSYITG-E-TLKVN 227 usage_00023.pdb 193 D-MEK-K-ILGTIPLG--RTGQPENVAGLVEFLALSPAASYIT-GQAFTID 237 usage_00025.pdb 194 N-IKA-E-MLKLIPAA--QFGEAQDIANAVTFFASDQSKYITG-Q-TLNVD 237 usage_00026.pdb 194 N-IKA-E-MLKLIPAA--QFGEAQDIANAVTFFASDQSKYITG-Q-TLNVD 237 usage_00027.pdb 194 N-IKA-E-MLKLIPAA--QFGEAQDIANAVTFFASDQSKYITG-Q-TLNVD 237 usage_00028.pdb 194 N-IKA-E-MLKLIPAA--QFGEAQDIANAVTFFASDQSKYITG-Q-TLNVD 237 usage_00033.pdb 191 M-KEA--TIQEARQ---LRSGTGEDIARTISFLCEDDSDMITG-T-IIEVT 233 usage_00062.pdb 198 EEAFD-R-ITARVPIG--RYVQPSEVAEMVAYLIGPGAAAVTA-Q-ALNVC 242 usage_00070.pdb 182 A-QRE-A-LLGQIPLG--RLGQAEEIAKVVGFLASDGAAYVTG-A-TVPVN 225 usage_00091.pdb 190 K-VVD-K-ITEMIPMG--HLGDPEDVADVVAFLASEDSGYITG-T-SVEVT 233 usage_00092.pdb 192 --AA-EK-LLEVIPLG--RYGEAAEVAGVVRFLAADPAAAYITGQ-VINID 235 usage_00093.pdb 188 -----EK-LLEVIPLG--RYGEAAEVAGVVRFLAADPAAAYITGQ-VINID 229 usage_00111.pdb 198 E-AVA-Q-MAGYSVFN--RVGEVTDVADVVAFLAGDDARWITG-S-YLDAS 241 a v f #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################