################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Wed Jan 20 23:11:33 2021 # Report_file: c_0313_4.html ################################################################################################ #==================================== # Aligned_structures: 5 # 1: usage_00002.pdb # 2: usage_00003.pdb # 3: usage_00005.pdb # 4: usage_00033.pdb # 5: usage_00040.pdb # # Length: 172 # Identity: 47/172 ( 27.3%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 75/172 ( 43.6%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 19/172 ( 11.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00002.pdb 1 -LDHNRALSLLARKAGVPVSQVRNVIIWGNHSSTQVPDTDSAVIGTTPAREAI------- 52 usage_00003.pdb 1 -LDHNRALSLLARKAGVPVSQVRNVIIWGNHSSTQVPDTDSAVIGTTPAREAI------- 52 usage_00005.pdb 1 RLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVD-MEWYE 59 usage_00033.pdb 1 RLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVD-MEWYE 59 usage_00040.pdb 1 RLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWLE 60 LDhNRA LA K G v r WGNHSsT PD A Pa E usage_00002.pdb 53 KDFVQVVRGRGAEIIQLRGLSSAMSAAKAAVDHVHDWIHGTPEGVYVSMGVYSDENPYGV 112 usage_00003.pdb 53 KDFVQVVRGRGAEIIQLRGLSSAMSAAKAAVDHVHDWIHGTPEGVYVSMGVYSDENPYGV 112 usage_00005.pdb 60 KVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPS-QGEYGI 118 usage_00033.pdb 60 KVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPS-QGEYGI 118 usage_00040.pdb 61 EEFTITVQKRGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGI 120 k F V RGa iIQ rG SSA SaA aa h dw gTPEG vSm V s YG usage_00002.pdb 113 PSGLIFSFPCTCH-AGEWTVVSGKL-----KQRLASTIAELQEERAQA---- 154 usage_00003.pdb 113 PSGLIFSFPCTCH-AGEWTVVSGKLNGDLGKQRLASTIAELQEERAQA---- 159 usage_00005.pdb 119 PEGIVYSFPVTAK-DGAYRVVEGLEINEFARKRMEITAQELLDEMEQVKALG 169 usage_00033.pdb 119 PEGIVYSFPVTAK-DGAYRVVEGLEINEFARKRMEITAQELLDEMEQVKALG 169 usage_00040.pdb 121 AEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKKSEAELLAEKKCV---- 168 p g SfP t G vv g R t EL E q #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################