################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 01:21:29 2021 # Report_file: c_0313_2.html ################################################################################################ #==================================== # Aligned_structures: 15 # 1: usage_00021.pdb # 2: usage_00022.pdb # 3: usage_00023.pdb # 4: usage_00024.pdb # 5: usage_00025.pdb # 6: usage_00026.pdb # 7: usage_00027.pdb # 8: usage_00028.pdb # 9: usage_00029.pdb # 10: usage_00030.pdb # 11: usage_00032.pdb # 12: usage_00038.pdb # 13: usage_00039.pdb # 14: usage_00043.pdb # 15: usage_00045.pdb # # Length: 172 # Identity: 30/172 ( 17.4%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 60/172 ( 34.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 26/172 ( 15.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00021.pdb 1 TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRK--------L 52 usage_00022.pdb 1 TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRK--------L 52 usage_00023.pdb 1 TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRK--------L 52 usage_00024.pdb 1 TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRK--------L 52 usage_00025.pdb 1 TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPI----------- 49 usage_00026.pdb 1 TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPI----------- 49 usage_00027.pdb 1 TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPI----------- 49 usage_00028.pdb 1 TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPI----------- 49 usage_00029.pdb 1 TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRK-LVE--S-K 56 usage_00030.pdb 1 TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRK-LVE--S-K 56 usage_00032.pdb 1 TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGDSQLPLWSCTHIAGKNINEY-------- 52 usage_00038.pdb 1 TTLDSARFRFMLSEYFGAAPQNVHAHIIGEHGDTELPVWSHANVGGVPVSE-LVE--K-N 56 usage_00039.pdb 1 --LDSARFRFMLSEYFGAAPQNVCAHIIGEHGDTELPVWSHANVGGVPVSE-LVE--K-N 54 usage_00043.pdb 1 TTLDSARFRY-LGEYFDIGPHNIHAYIIGEHGDTELPVWSHVSVGIQKLQT-LLE--K-D 55 usage_00045.pdb 1 --LDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLKT-LHPDLGTD 57 LD aRFR l E p n h iiGEHGD lPvWS usage_00021.pdb 53 VESK---DLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLD 109 usage_00022.pdb 53 VESK---DLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLD 109 usage_00023.pdb 53 VESK---DLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLD 109 usage_00024.pdb 53 VESK---DLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLD 109 usage_00025.pdb 50 -------DLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLD 102 usage_00026.pdb 50 -------DLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLD 102 usage_00027.pdb 50 -------DLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLD 102 usage_00028.pdb 50 -------DLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLD 102 usage_00029.pdb 57 GEEA-QKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLD 115 usage_00030.pdb 57 GEEA-QKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLD 115 usage_00032.pdb 53 -------DKKKIAEDVKTAGATIIKNKGATYYGIAVSINTIVETLLKNQNTIRTVGTVIN 105 usage_00038.pdb 57 DAYK-QEELDQIVDDVKNAAYHIIEKKGATYYGVAMSLARITKAILHNENSILTVSTYLD 115 usage_00039.pdb 55 DAYK-QEELDQIVDDVKNAAYHIIEKKGATYYGVAMSLARITKAILHNENSILTVSTYLD 113 usage_00043.pdb 56 NTYN-QEDLDKIFINVRDAAYHIIERKGATYYGIG-SLLRVTKAILNDENSVLTVSAYLE 113 usage_00045.pdb 58 K---DKEQWKEVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPVSTMIK 114 i V aay iI KGaTyyg il n n tVs usage_00021.pdb 110 GLYGERD-VYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSVLA-- 158 usage_00022.pdb 110 GLYGERD-VYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSVLA-- 158 usage_00023.pdb 110 GLYGERD-VYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSVLA-- 158 usage_00024.pdb 110 GLYGERD-VYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSVLA-- 158 usage_00025.pdb 103 GLYGERD-VYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSVLARA 153 usage_00026.pdb 103 GLYGERD-VYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSVLARA 153 usage_00027.pdb 103 GLYGERD-VYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSVLARA 153 usage_00028.pdb 103 GLYGERD-VYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSVLARA 153 usage_00029.pdb 116 GLYGERD-VYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSVLAR- 165 usage_00030.pdb 116 GLYGERD-VYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSVLAR- 165 usage_00032.pdb 106 GMYGIED-VAISLPSIVNSEGVQEVLQFNLTPEEEEALRFSAEQVKKVLNEV 156 usage_00038.pdb 116 GQYGADD-VYIGVPAVVNRGGIAGITELNLNEKEKEQFLHSAGVLKNILKP- 165 usage_00039.pdb 114 GQYGADD-VYIGVPAVVNRGGIAGITELNLNEKEKEQFLHSAGVLKNIL--- 161 usage_00043.pdb 114 GQYGQKD-VYIGVPAVLNRGGVREILEVELSEDEELKFDHSVQVLKETAPVL 164 usage_00045.pdb 115 GLYGIKDDVFLSVPCILGQNGISDLVKVTLTSEEEARLKKSADTLWGIQKEL 166 G YG D V i vP n G L E Sa lk #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################