################################################################################################ # Program: MUSTANG v3.2.3: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, J. C. Whisstock, and P. J. Stuckey, A. M. Lesk # Rundate: Thu Jan 21 03:09:01 2021 # Report_file: c_0277_9.html ################################################################################################ #==================================== # Aligned_structures: 25 # 1: usage_00028.pdb # 2: usage_00051.pdb # 3: usage_00075.pdb # 4: usage_00078.pdb # 5: usage_00079.pdb # 6: usage_00106.pdb # 7: usage_00107.pdb # 8: usage_00111.pdb # 9: usage_00112.pdb # 10: usage_00115.pdb # 11: usage_00122.pdb # 12: usage_00123.pdb # 13: usage_00151.pdb # 14: usage_00159.pdb # 15: usage_00219.pdb # 16: usage_00235.pdb # 17: usage_00236.pdb # 18: usage_00247.pdb # 19: usage_00248.pdb # 20: usage_00249.pdb # 21: usage_00250.pdb # 22: usage_00251.pdb # 23: usage_00253.pdb # 24: usage_00254.pdb # 25: usage_00270.pdb # # Length: 116 # Identity: 18/116 ( 15.5%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 33/116 ( 28.4%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 21/116 ( 18.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= usage_00028.pdb 1 -VQLVQSGAEVKKPGASVKVSCKASGFNIKDTYIHWVRQAPGQRLEWMGRIDPANGYTKY 59 usage_00051.pdb 1 -VQLLQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPVFGSANY 59 usage_00075.pdb 1 -VQLLQSGAAVTKPGASVRVSCEASGYNIRDYFIHWWRQAPGQGLQWVGWINPKTGQPNN 59 usage_00078.pdb 1 -VQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANY 59 usage_00079.pdb 1 -VQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANY 59 usage_00106.pdb 1 QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANY 60 usage_00107.pdb 1 QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANY 60 usage_00111.pdb 1 --QLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANY 58 usage_00112.pdb 1 --QLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANY 58 usage_00115.pdb 1 EVQLVESGAEVKKPGSSVKVSCRASG-TFYKYAINWVRQAPGQGLEWMGGIIPFFGTTNY 59 usage_00122.pdb 1 QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANY 60 usage_00123.pdb 1 QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANY 60 usage_00151.pdb 1 -VQVVQSGAEVRKPGASVKVSCKVSGFTLTGLSIHWVRQAPGKGLEWMGGFGPEENEIIY 59 usage_00159.pdb 1 -VQLVQSGAEVKKAGESLEISCKGSGYTFTDHWIAWVRQVPGKGLEWMGMIYPGDSDTRY 59 usage_00219.pdb 1 -VQLAQSENELKKPGASVKVSCKTSGYTFTRFGMSWVRQAPGQGLEWMGWISGYTGDTKY 59 usage_00235.pdb 1 -VQLVQSGTQMKEPGASVTISCVTSGYEFVEILINWVRQVPGRGLEWMGWMNPRGGGVNY 59 usage_00236.pdb 1 -VQLLQSGAQVKKTGASMRISCKTSGYTFLNCPINWVRQAPGRGLEWMGWMKPRGGAVNY 59 usage_00247.pdb 1 QVQLVQSGAEVKKPGSSVKVSCKASGGTFSNYAISWVRQAPGQGFEWMGGIIPIFGTANY 60 usage_00248.pdb 1 EVQLVESGAEVKKPGSSVKVSCRASG-TFYKYAINWVRQAPGQGLEWMGGIIPFFGTTNY 59 usage_00249.pdb 1 EVQLVESGAEVKKPGSSVKVSCRASG-TFYKYAINWVRQAPGQGLEWMGGIIPFFGTTNY 59 usage_00250.pdb 1 EVQLVESGAEVKKPGSSVKVSCRASG-TFYKYAINWVRQAPGQGLEWMGGIIPFFGTTNY 59 usage_00251.pdb 1 EVQLVESGAEVKKPGSSVKVSCRASG-TFYKYAINWVRQAPGQGLEWMGGIIPFFGTTNY 59 usage_00253.pdb 1 -VQLVQSGSELKKPGASVKVSCKASGYSFTSYSINWVRQAPGQGPEWMGWIDTNTGNPTY 59 usage_00254.pdb 1 -VQLVQSGSELKKPGASVKVSCKASGYSFTSYSINWVRQAPGQGPEWMGWIDTNTGNPTY 59 usage_00270.pdb 1 -GQLVQSGAELKKPGASVKISCKTSGYRFNFYHINWIRQTAGRGPEWMGWISPYSGDKNL 59 Ql Sg k G S SC SG i W RQ pG g eWmG usage_00028.pdb 60 DPKFQGRVTITADTS---------A-STAYMELSSLRSEDEAVYYCAREGY----- 100 usage_00051.pdb 60 AQKFQGRVTITADEA---------T-STTYMELSSLRSEDTAVYFCAKGG------ 99 usage_00075.pdb 60 PRQFQGRVSLTRHASWDF------DTYSFYMDLKALRSDDTAVYFCARQRS----- 104 usage_00078.pdb 60 AQKFQGRVTITADKS---------T-STAYMELSSLRSEDTAVYYCAREGTT---- 101 usage_00079.pdb 60 AQKFQGRVTITADKS---------T-STAYMELSSLRSEDTAVYYCAREGTTG--- 102 usage_00106.pdb 61 AQKFQGRVTITADES---------T-STAYMELSSLRSEDTAVYYCAREPDYYDS- 105 usage_00107.pdb 61 AQKFQGRVTITADES---------T-STAYMELSSLRSEDTAVYYCAREPDYYDS- 105 usage_00111.pdb 59 AQKFQGRVTITADES---------T-STAYMELSSLRSEDTAVYYCAREPDYY-DS 103 usage_00112.pdb 59 AQKFQGRVTITADES---------T-STAYMELSSLRSEDTAVYYCAREPDYY-D- 102 usage_00115.pdb 60 AQKFQGRLTITADGS---------T-NTAYMQLDSLRSEDTAVYYCAGP------- 98 usage_00122.pdb 61 AQKFQGRVTITADKS---------T-STAYMELSSLRSEDTAVYYCAREGT----- 101 usage_00123.pdb 61 AQKFQGRVTITADKS---------T-STAYMELSSLRSEDTAVYYCAREGT----- 101 usage_00151.pdb 60 AQKFQGRVSMTEDTS---------T-NTAYMELSSLRSEDTAVYYCATG------- 98 usage_00159.pdb 60 SPSLQGRVTMSADKT---------L-STAYLQWSRLEASDTAMYYCAR-------- 97 usage_00219.pdb 60 ARSFQGRLTLTTDTS---------T-GTAYMELRSLRSDDTAIYYCVR-------- 97 usage_00235.pdb 60 ARQFQGKVTMTRDVY---------R-DTAYLTLSGLTSGDTAKYFCVRGR------ 99 usage_00236.pdb 60 PQKFQGRVTMTRDMS---------T-DTAFLDMSNLRSDDTAVYFCARG------- 98 usage_00247.pdb 61 AQKFQGRVTITADES---------T-STAYMELSSLRSEDTAVYYCARGPEYYDY- 105 usage_00248.pdb 60 AQKFQGRLTITADGS---------T-NTAYMQLDSLRSEDTAVYYCAGP------- 98 usage_00249.pdb 60 AQKFQGRLTITADGS---------T-NTAYMQLDSLRSEDTAVYYCAGP------- 98 usage_00250.pdb 60 AQKFQGRLTITADGS---------T-NTAYMQLDSLRSEDTAVYYCAGP------- 98 usage_00251.pdb 60 AQKFQGRLTITADGS---------T-NTAYMQLDSLRSEDTAVYYCAGP------- 98 usage_00253.pdb 60 AQDFAGRFVFSLDTS---------V-TTAYLQISSLKAGDTAVYYCATY------- 98 usage_00254.pdb 60 AQDFAGRFVFSLDTS---------V-TTAYLQISSLKAGDTAVYYCATY------- 98 usage_00270.pdb 60 APAFQDRVIMTTDTEV-PVTSFTST-GAAYMEIRNLKFDDTGTYFCAKGLL----- 108 f gr d y L Dta Y C #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # 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