Protein Concepts Dictionary

Tableau information

Concept source:  d2h4xa_  amino acid (a.a.) range (SER2)(TRP115)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: EHHEHHEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (SER2)   (ARG10) E1
	   (GLY14)   (ASN20) H2
	   (ASN31)   (ASN49) H3
	   (ASP53)   (SER58) E4
	   (ARG62)   (LEU74) H5
	   (LEU74)   (PRO80) H6
	   (PRO80)   (TRP85) E7
	  (ARG100)  (ASN106) H8
	  (GLU109)  (TRP115) H9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                             
H2      -73.2°   H2                                                      
H3      161.5°  109.4°   H3                                               
E4      -41.6°   57.1°  155.2°   E4                                        
H5      120.4° -113.4°  -41.3°  159.3°   H5                                 
H6     -100.3°  116.3°   94.8°  -76.4°  122.6°   H6                          
E7      -58.9°   50.4°  137.3°  -17.9°  163.8°  -71.7°   E7                   
H8       83.0°  -35.1°  110.0°   46.3° -137.6°   81.6°   29.8°   H8            
H9      127.5° -158.3°  -53.6°  131.7°  -64.6°   58.5°  130.2°  131.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2h4xa_ :     (SER2)  (TRP115)   [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2a9jb_ :     (TYR4)  (ARG116)   [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1xq9a_ :     (MET9)  (TYR115)   [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |Phosphoglycerate mutase |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
 d2f90a_ :     (MET8)  (ASN106)   [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4pgmb_ :     (PRO1)  (ARG113)   [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |Phosphoglycerate mutase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d2a9ja_ :     (TYR4)  (TRP115)   [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1t8pa_ :     (TYR4)  (SER118)   [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |Phosphoglycerate mutase |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.60