Protein Concepts Dictionary

Tableau information

Concept source:  d1x42a1  amino acid (a.a.) range (VAL105)(ASP200)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: HEHHEHEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (VAL105)  (LYS113) H1
	  (HIS117)  (ASP123) E2
	  (THR126)  (GLY137) H3
	  (ILE138)  (ASP143) H4
	  (ASP143)  (SER148) E5
	  (ARG159)  (GLY169) H6
	  (ALA175)  (GLY179) E7
	  (ASN181)  (GLY193) H8
	  (THR195)  (ASP200) E9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                             
E2      131.8°   E2                                                      
H3     -100.6°  127.5°   H3                                               
H4       30.1° -117.1°  109.3°   H4                                        
E5      117.0°  -17.3°  141.3°   99.8°   E5                                 
H6      -48.5°  157.6°  -58.4°  -73.2°  158.5°   H6                          
E7     -173.9°  -42.9°   84.6° -150.4°  -58.4°  134.3°   E7                   
H8        7.4°  125.6° -106.8°  -24.6°  110.2°  -55.8°  168.6°   H8            
E9      166.6°  -61.1°   66.5°  155.6°  -76.3°  118.3°  -18.1°  173.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.8°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3qnma_ :   (LEU117)  (VAL206)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 818]
 d3umba_ :   (ASN104)  (ARG200)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Ralstonia solanacearum [TaxId: 305]
 d1zrma_ :   (VAL100)  (ARG196)   [view usage] : c.108.1.1 |HAD-like |HAD-like |HAD-related |L-2-Haloacid dehalogenase, HAD |Pseudomonas sp., strain YL [TaxId: 306]
 d2go7c_ :    (GLY88)  (ASN181)   [view usage] : c.108.1.6 |HAD-like |HAD-like |beta-Phosphoglucomutase-like |Hypothetical protein SP2064 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
 d1u7oa_ :    (GLU50)  (ASP143)   [view usage] : c.108.1.17 |HAD-like |HAD-like |Magnesium-dependent phosphatase-1, Mdp1 |Magnesium-dependent phosphatase-1, Mdp1 |Mouse (Mus musculus) [TaxId: 10090]
 d1rdfa_ :   (VAL108)  (LEU206)   [view usage] : c.108.1.3 |HAD-like |HAD-like |Phosphonoacetaldehyde hydrolase-like |Phosphonoacetaldehyde hydrolase |Bacillus cereus [TaxId: 1396]
 d2om6a_ :   (THR104)  (GLN204)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 70601]
 d2wm8a_ :    (GLU51)  (ASN144)   [view usage] : c.108.1.17 |HAD-like |HAD-like |Magnesium-dependent phosphatase-1, Mdp1 |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1ynsa_ :   (PHE132)  (ARG232)   [view usage] : c.108.1.22 |HAD-like |HAD-like |Enolase-phosphatase E1 |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1juda_ :   (VAL100)  (ARG196)   [view usage] : c.108.1.1 |HAD-like |HAD-like |HAD-related |L-2-Haloacid dehalogenase, HAD |Pseudomonas sp., strain YL [TaxId: 306]
 d1x42a1 :   (VAL105)  (ASP200)   [view usage] : c.108.1.1 |HAD-like |HAD-like |HAD-related |Hypothetical protein PH0459 |Pyrococcus horikoshii [TaxId: 53953]
 d3ed5a_ :   (PHE106)  (PRO202)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
 d2wf5a_ :    (ILE96)  (GLY189)   [view usage] : c.108.1.6 |HAD-like |HAD-like |beta-Phosphoglucomutase-like |beta-Phosphoglucomutase |Lactococcus lactis [TaxId: 1358]
 d3i76b_ :   (PHE106)  (PRO202)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
 d4ffda_ :   (LEU112)  (ARG201)   [view usage] : c.108.1.1 |HAD-like |HAD-like |HAD-related |automated matches |Pyrococcus horikoshii [TaxId: 53953]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 c.108