Protein Concepts Dictionary

Tableau information

Concept source:  d2ojua_  amino acid (a.a.) range (PRO28)(LEU140)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: HHEEEEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (PRO28)   (ASN41) H1
	   (ASN41)   (CYS46) H2
	   (HIS49)   (LYS53) E3
	   (PHE55)   (ASP61) E4
	   (VAL93)   (ASN98) E5
	  (SER105)  (TYR111) E6
	  (GLN114)  (LYS120) H7
	  (LYS120)  (GLY125) E8
	  (GLY130)  (LEU140) H9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                             
H2      -73.7°   H2                                                      
E3     -120.8°  -64.3°   E3                                               
E4       59.3°  122.4° -170.6°   E4                                        
E5       96.5°   81.8°  115.7°  -73.0°   E5                                 
E6     -102.7°  -54.4°  -18.1°  158.9°  123.1°   E6                          
H7      100.4°  150.8° -136.0°   41.4°   70.3° -151.3°   H7                   
E8      -60.5° -101.7°  -88.6°   83.5°  153.7°  -77.4°  -99.7°   E8            
H9       80.5°   43.6°  -94.8°   94.4°   38.5°  -92.9°  107.5°  135.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2hq6a_ :    (PRO34)  (ARG143)   [view usage] : b.62.1.0 |Cyclophilin-like |Cyclophilin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2ojua_ :    (PRO28)  (LEU140)   [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Cyclophilin-like protein PPIL3B |Human (Homo sapiens) [TaxId: 9606]
 d2fu0a1 :    (LYS28)  (LYS138)   [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Putative cyclophilin PFE0505w |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
 d2ojub_ :    (PRO28)  (LEU140)   [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Cyclophilin-like protein PPIL3B |Human (Homo sapiens) [TaxId: 9606]
 d2alfa1 :    (PRO30)  (GLY146)   [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Cyclophilin (eukaryotic) |Human (Homo sapiens), variant A [TaxId: 9606]
 d3k0ra_ :    (PRO30)  (SER147)   [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Cyclophilin (eukaryotic) |Human (Homo sapiens), variant A [TaxId: 9606]
 d1zkcb_ :   (LYS302)  (VAL413)   [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain |Human (Homo sapiens) [TaxId: 9606]
 d2b71a1 :    (PRO60)  (SER171)   [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Cyclophilin-like protein PY00693 |Plasmodium yoelii [TaxId: 5861]
 d3k0na_ :    (PRO30)  (SER147)   [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Cyclophilin (eukaryotic) |Human (Homo sapiens), variant A [TaxId: 9606]
 d1zkca1 :   (ILE308)  (VAL413)   [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain |Human (Homo sapiens) [TaxId: 9606]
 d2x7ka_ :    (PRO33)  (VAL145)   [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3pmpa_ :    (PRO28)  (GLY144)   [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |automated matches |Moniliophthora perniciosa [TaxId: 153609]
 d1xyha1 :    (PRO22)  (LEU134)   [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Cyclophilin-like protein PPIL3B |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.62