Protein Concepts Dictionary

Tableau information

Concept source:  d2pu7a_  amino acid (a.a.) range (SER10)(GLY136)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: EEEHHEHEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (SER10)   (LYS18) E1
	   (PHE23)   (GLY31) E2
	   (GLU34)   (HIS40) E3
	   (GLY47)   (TYR52) H4
	   (TYR52)   (GLY63) H5
	   (ARG65)   (ASP70) E6
	   (GLY87)  (LEU101) H7
	  (ASP104)  (ALA112) E8
	  (ALA112)  (GLU124) H9
	  (GLY130)  (GLY136) E10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                    
E2      131.7°   E2                                                             
E3      -86.1°  126.0°   E3                                                      
H4      121.4°  -28.4°  103.6°   H4                                               
H5       91.7°  -53.5°  175.8°   74.5°   H5                                        
E6      -73.6°  145.6°  -20.2°  123.6°  160.8°   E6                                 
H7      110.4°  -63.9°  147.0°  -92.1°  -37.2°  136.7°   H7                          
E8     -101.3°  100.2°  -26.6°   77.0°  151.4°  -46.8°  147.5°   E8                   
H9       46.3°  -97.2°  131.8° -107.8°  -46.7°  115.8°  -66.9° -145.6°   H9            
E10    -103.4°  102.7°  -23.3°   81.2°  155.5°  -43.4°  143.7°   -6.4° -149.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.6°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1zoib_ :     (SER2)  (ALA122)   [view usage] : c.69.1.12 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Haloperoxidase |automated matches |Pseudomonas putida [TaxId: 303]
 d2jbwb_ :   (PRO112)  (GLY240)   [view usage] : c.69.1.41 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |2,6-dihydropseudooxynicotine hydrolase-like |2,6-dihydropseudooxynicotine hydrolase |Arthrobacter nicotinovorans [TaxId: 29320]
 d1a7ua_ :     (PRO1)  (ALA123)   [view usage] : c.69.1.12 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Haloperoxidase |Chloroperoxidase T |Streptomyces aureofaciens [TaxId: 1894]
 d3jweb_ :    (PRO30)  (SER156)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1ufoa_ :     (MSE1)  (ILE136)   [view usage] : c.69.1.27 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Hypothetical protein TT1662 |Hypothetical protein TT1662 |Thermus thermophilus [TaxId: 274]
 d4bata_ :     (GLY9)  (ASP131)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
 d3v1ka_ :    (SER10)  (GLY136)   [view usage] : c.69.1.10 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carbon-carbon bond hydrolase |2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) |Burkholderia xenovorans [TaxId: 36873]
 d3hjua_ :    (PRO20)  (SER146)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1broa_ :     (PRO1)  (ALA123)   [view usage] : c.69.1.12 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Haloperoxidase |Bromoperoxidase A2 |Streptomyces aureofaciens [TaxId: 1894]
 d3pe6a_ :    (PRO20)  (SER146)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3jw8a_ :    (PRO30)  (SER156)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1u2ed_ :  (SER3008) (GLY3134)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Escherichia coli [TaxId: 562]
 d4b9aa_ :     (GLY9)  (THR131)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
 d3hjub_ :    (PRO20)  (SER146)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1u2ea_ :     (SER8)  (GLY134)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Escherichia coli [TaxId: 562]
 d3v1kb_ :    (SER10)  (GLY136)   [view usage] : c.69.1.10 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carbon-carbon bond hydrolase |2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) |Burkholderia xenovorans [TaxId: 36873]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.69