Protein Concepts Dictionary

Tableau information

Concept source:  d2bp8b1  amino acid (a.a.) range (THR9)(PRO152)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEEEEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (THR9)   (ALA15) E1
	   (LYS31)   (GLU41) E2
	   (LYS42)   (ASP47) E3
	   (LYS49)   (GLN54) E4
	   (PRO65)   (HIS70) E5
	   (GLY72)   (PRO82) E6
	   (PRO88)   (HIS94) E7
	  (GLY111)  (LYS119) E8
	  (GLY124)  (CYS130) E9
	  (VAL136)  (SER142) H10
	  (GLN144)  (PRO152) E11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
E2      -35.3°   E2                                                                    
E3       42.0°  -77.1°   E3                                                             
E4     -147.7° -114.9°  155.7°   E4                                                      
E5      143.0° -167.1° -101.6°   61.8°   E5                                               
E6      -56.9°  -25.4°   98.3°  -99.5°  160.1°   E6                                        
E7      104.8°  136.9°   63.8°   96.6°  -38.2°  161.6°   E7                                 
E8      116.2°  145.9°   75.8°   84.4°  -26.9°  171.1°  -12.2°   E8                          
E9      -73.8°  -38.6° -115.6°   78.8°  140.6°  -22.0°  163.2°  157.2°   E9                   
H10      70.1°   91.8°   57.8° -137.6°  -98.3°   91.5°  -82.6°  -91.0°  111.8°   H10           
E11     132.9°  168.2°   91.2°  -76.3°  -17.2°  162.6°  -33.0°  -26.2°  153.2°  -81.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1rzpc1 :    (ALA27)  (PRO158)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Achromobacter cycloclastes [TaxId: 223]
 d1et5a1 :    (LEU12)  (PRO158)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Alcaligenes faecalis, strain s-6 [TaxId: 511]
 d3h56a1 :    (LEU12)  (PRO158)   [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Alcaligenes faecalis [TaxId: 511]
 d1gs7a1 :    (PRO21)  (PRO152)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Alcaligenes xylosoxidans [TaxId: 85698]
 d2bp8b1 :     (THR9)  (PRO152)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |automated matches |Achromobacter xylosoxidans [TaxId: 85698]
 d2bp0a1 :     (THR9)  (PRO152)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |automated matches |Achromobacter xylosoxidans [TaxId: 85698]
 d2bp8a1 :     (LEU6)  (PRO152)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |automated matches |Achromobacter xylosoxidans [TaxId: 85698]
 d1gs8a1 :     (THR9)  (PRO152)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Alcaligenes xylosoxidans [TaxId: 85698]
 d1kcba1 :    (LEU12)  (PRO158)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Achromobacter cycloclastes [TaxId: 223]
 d1as6b1 :    (PRO13)  (PRO158)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Alcaligenes faecalis, strain s-6 [TaxId: 511]
 d1kbva1 :    (ILE17)  (PRO156)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Neisseria gonorrhoeae, AniA [TaxId: 485]
 d1ndta1 :    (PRO21)  (PRO152)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Alcaligenes xylosoxidans [TaxId: 85698]
 d2e86a1 :    (PRO23)  (PRO158)   [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Alcaligenes faecalis [TaxId: 511]
 d1mzza1 :    (LEU44)  (PRO190)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Rhodobacter sphaeroides [TaxId: 1063]
 d1waea1 :    (PRO21)  (PRO152)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Alcaligenes xylosoxidans [TaxId: 85698]
 d1zdqb1 :    (LEU12)  (PRO158)   [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Alcaligenes faecalis [TaxId: 511]
 d1npja1 :    (ALA27)  (PRO158)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Alcaligenes faecalis, strain s-6 [TaxId: 511]
 d3h4ha1 :    (PRO13)  (PRO158)   [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Alcaligenes faecalis [TaxId: 511]
 d1gs6x1 :    (HIS20)  (PRO152)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Alcaligenes xylosoxidans [TaxId: 85698]
 d2avfc1 :    (PRO13)  (LEU157)   [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Achromobacter cycloclastes [TaxId: 223]
 d1zdqa1 :    (GLN15)  (PRO158)   [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Alcaligenes faecalis [TaxId: 511]
 d2bp0b1 :     (THR9)  (PRO152)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |automated matches |Achromobacter xylosoxidans [TaxId: 85698]
 d1bq5a1 :    (THR15)  (VAL156)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Alcaligenes xylosoxidans [TaxId: 85698]
 d1zv2a1 :    (PRO55)  (PRO190)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Rhodobacter sphaeroides [TaxId: 1063]
 d2p80a1 :    (GLN15)  (PRO158)   [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Alcaligenes faecalis [TaxId: 511]
 d1ntda1 :    (LEU12)  (PRO158)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Alcaligenes faecalis, strain s-6 [TaxId: 511]
 d2dwta1 :    (LEU44)  (PRO190)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Rhodobacter sphaeroides [TaxId: 1063]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.6