Protein Concepts Dictionary

Tableau information

Concept source:  d4ntmb_  amino acid (a.a.) range (SER3)(GLU121)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EEHEEHHHHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (SER3)   (GLU13) E1
	   (ALA14)   (HIS20) E2
	   (HIS25)   (LEU30) H3
	   (LEU30)   (SER34) E4
	   (MSE36)   (THR42) E5
	   (PHE55)   (LYS63) H6
	   (LYS63)   (LEU69) H7
	   (ILE77)   (GLU81) H8
	   (THR84)   (GLN95) H9
	  (ALA105)  (GLU110) E10
	  (GLY115)  (GLU121) E11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
E2      -95.3°   E2                                                                    
H3       65.4° -127.2°   H3                                                             
E4     -130.8°  131.1°  -91.5°   E4                                                      
E5      160.4°   88.2°  -97.2°  -54.6°   E5                                               
H6      -45.0°   62.7°  -70.7° -161.9°  122.7°   H6                                        
H7      -31.7°   71.8°   96.7° -139.4°  159.8°  -49.8°   H7                                 
H8      -91.8°  -25.4° -146.1°  122.2°   99.3°   75.4°  -61.5°   H8                          
H9      116.3°  119.8°   50.9°  -59.2°  -46.9°  105.0°  146.9°  141.2°   H9                   
E10     -25.9°  -91.8°   87.9°  121.6°  173.6°  -62.7°  -20.5°  -78.2°  137.5°   E10           
E11     132.9°   80.6°  -79.9°  -78.3°  -28.9°   94.9°  142.3°  101.4°  -40.0°  157.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4ntmb_ :     (SER3)  (GLU121)   [view usage] : d.96.1.0 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |automated matches |automated matches |Escherichia coli [TaxId: 469008]
 d2obab_ :     (MSE1)  (GLY117)   [view usage] : d.96.1.0 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
 d4ntkc_ :     (SER3)  (GLY120)   [view usage] : d.96.1.0 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |automated matches |automated matches |Escherichia coli [TaxId: 469008]
 d4ntnc_ :     (THR4)  (GLY120)   [view usage] : d.96.1.0 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |automated matches |automated matches |Escherichia coli [TaxId: 469008]
 d4ntka_ :     (SER3)  (GLU121)   [view usage] : d.96.1.0 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |automated matches |automated matches |Escherichia coli [TaxId: 469008]
 d4ntkd_ :     (THR4)  (GLU121)   [view usage] : d.96.1.0 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |automated matches |automated matches |Escherichia coli [TaxId: 469008]
 d3qnaa_ :     (SER2)  (GLY119)   [view usage] : d.96.1.0 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |automated matches |automated matches |Escherichia coli [TaxId: 469008]
 d3qn9a_ :     (SER3)  (ARG119)   [view usage] : d.96.1.0 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |automated matches |automated matches |Escherichia coli [TaxId: 469008]
 d4ntkf_ :     (SER3)  (GLY120)   [view usage] : d.96.1.0 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |automated matches |automated matches |Escherichia coli [TaxId: 469008]
 d2obaa_ :     (MSE1)  (GLY117)   [view usage] : d.96.1.0 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  d.96