Protein Concepts Dictionary

Tableau information

Concept source:  d1m83a_  amino acid (a.a.) range (ASN34)(PRO177)

nSSEs in this Concept: 13

String of secondary struct.elems. (SSEs) defining this concept: EHHEHHHHHHEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ASN34)   (ILE39) E1
	   (VAL40)   (THR46) H2
	   (PRO51)   (GLY69) H3
	   (ALA75)   (ILE79) E4
	   (ILE79)   (PRO84) H5
	   (ALA85)   (VAL97) H6
	   (ILE99)  (MET105) H7
	  (MET105)  (ALA113) H8
	  (ALA120)  (TYR125) H9
	  (PRO126)  (ASN137) H10
	  (ASP139)  (VAL143) E11
	  (LYS148)  (GLY166) H12
	  (ILE171)  (PRO177) E13

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                         
H2      -37.0°   H2                                                                                  
H3      147.1°  135.6°   H3                                                                           
E4      -28.6°  -42.6° -175.7°   E4                                                                    
H5     -104.1° -105.7° -107.7°   76.4°   H5                                                             
H6      -90.1°  -54.6°  102.1°  -79.7°  -82.4°   H6                                                      
H7      -71.7°  -76.2°   75.6° -100.1° -170.5°  105.8°   H7                                               
H8      -13.6°  -44.3°  134.0°  -41.7° -115.4°  -98.9°  -59.4°   H8                                        
H9     -162.2° -132.5°  -20.8°  163.1°   92.7°   86.2°   92.6°  151.9°   H9                                 
H10     152.6° -170.4°  -38.5°  144.0°   74.5°  116.4°  105.2°  144.7°  -38.5°   H10                         
E11     -38.9°  -45.1°  109.5°  -66.4° -142.8°  -91.5°  -34.6°   29.3° -123.7°  138.7°   E11                  
H12     118.8°  114.3°  -93.7°   90.5°   15.2°   79.2°  168.9° -130.4°  -77.6°  -63.8°  156.4°   H12           
E13     -72.3°  -76.6°   75.0° -100.7°  171.0° -105.6°    0.7°   60.0°  -92.0°  104.8°  -35.2° -168.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1m83a_ :    (ASN34)  (PRO177)   [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Tryptophanyl-tRNA synthetase (TrpRS) |Bacillus stearothermophilus [TaxId: 1422]
 d1i6ma_ :    (ASN34)  (PRO177)   [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Tryptophanyl-tRNA synthetase (TrpRS) |Bacillus stearothermophilus [TaxId: 1422]
 d3sz3a_ :    (ASP36)  (PRO180)   [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |automated matches |Vibrio cholerae [TaxId: 243277]
 d1i6ka_ :    (ASN34)  (PRO177)   [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Tryptophanyl-tRNA synthetase (TrpRS) |Bacillus stearothermophilus [TaxId: 1422]
 d3tzlb_ :    (GLN33)  (ASN176)   [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Campylobacter jejuni [TaxId: 192222]
 d3tzla_ :    (GLN33)  (ASN176)   [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Campylobacter jejuni [TaxId: 192222]
 d3n9ia_ :    (ASP48)  (PRO189)   [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |automated matches |Yersinia pestis [TaxId: 214092]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.26