Protein Concepts Dictionary

Tableau information

Concept source:  d2pbqc_  amino acid (a.a.) range (LYS5)(ILE159)

nSSEs in this Concept: 14

String of secondary struct.elems. (SSEs) defining this concept: EHHEHEHEHHEEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (LYS5)   (SER14) E1
	   (SER14)   (GLY20) H2
	   (ILE25)   (VAL37) H3
	   (GLU43)   (ILE49) E4
	   (GLU52)   (GLY68) H5
	   (SER70)   (GLY76) E6
	   (ALA81)   (VAL93) H7
	   (GLU95)   (PRO99) E8
	   (PRO99)  (LEU110) H9
	  (VAL113)  (LEU118) H10
	  (LEU118)  (GLY124) E11
	  (SER128)  (ASN133) E12
	  (LYS137)  (VAL148) H13
	  (ILE152)  (ILE159) H14

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                
H2      102.2°   H2                                                                                         
H3      157.5°  -89.0°   H3                                                                                  
E4      -17.0° -103.0°  167.8°   E4                                                                           
H5      170.5°   70.3°  -23.0°  167.1°   H5                                                                    
E6      -13.3°   99.8°  146.0°  -30.3°  158.9°   E6                                                             
H7      157.3°   89.6°  -39.2°  141.3°  -31.6° -168.8°   H7                                                      
E8      -70.1°  118.4°   87.5°  -84.9°  107.9°  -59.4°  121.2°   E8                                               
H9      -57.4°   89.2°  104.0°  -74.3°  115.7°  -44.1°  143.2°  -33.7°   H9                                        
H10     101.1°  -93.8°  -97.5°   84.1°  -85.4°  114.4°  -58.3° -147.6° -158.3°   H10                                
E11     156.3°  -72.1°  -45.9°  140.0°  -28.2°  167.0°   17.9°  133.2°  143.0°  -57.4°   E11                         
E12     -25.9°  101.4°  133.1°  -42.9°  147.7°  -13.0° -167.0°  -47.2°  -32.1°  126.8° -173.1°   E12                  
H13     143.7° -113.3°  -36.0°  136.2°  -45.1°  146.4°  -26.4°   97.9°  127.7°  -70.3°  -44.1°  140.6°   H13           
H14     116.2°  -86.7°  -83.4°   99.2°  -69.9°  129.5°   44.3°  153.1° -171.4°   15.6°  -41.8°  142.1°   60.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4lhba_ :    (LYS15)  (GLU169)   [view usage] : c.57.1.0 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |automated matches |automated matches |Pyrococcus furiosus [TaxId: 186497]
 d1eava_ :     (LYS7)  (ILE162)   [view usage] : c.57.1.1 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |MogA-like |Plant CNX1 G domain |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
 d2f7ya_ :     (LYS3)  (GLU158)   [view usage] : c.57.1.0 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |automated matches |automated matches |Shewanella oneidensis [TaxId: 70863]
 d4lhbc_ :    (LYS12)  (GLU169)   [view usage] : c.57.1.0 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |automated matches |automated matches |Pyrococcus furiosus [TaxId: 186497]
 d3mcia_ :     (ALA6)  (ILE159)   [view usage] : c.57.1.1 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |MogA-like |automated matches |Aquifex aeolicus [TaxId: 224324]
 d3mchb_ :     (ARG3)  (VAL153)   [view usage] : c.57.1.0 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
 d2f7yc_ :     (ALA4)  (LEU156)   [view usage] : c.57.1.0 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |automated matches |automated matches |Shewanella oneidensis [TaxId: 70863]
 d3k6ab_ :     (LYS3)  (GLU158)   [view usage] : c.57.1.1 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |MogA-like |MogA |Shewanella oneidensis [TaxId: 70863]
 d2qq1d_ :     (ALA6)  (GLY160)   [view usage] : c.57.1.1 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |MogA-like |MogA |Aquifex aeolicus [TaxId: 63363]
 d2qq1a_ :     (ALA6)  (ILE159)   [view usage] : c.57.1.1 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |MogA-like |MogA |Aquifex aeolicus [TaxId: 63363]
 d2qq1b_ :     (ALA6)  (GLY160)   [view usage] : c.57.1.1 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |MogA-like |MogA |Aquifex aeolicus [TaxId: 63363]
 d2qq1f_ :     (ALA6)  (LEU158)   [view usage] : c.57.1.1 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |MogA-like |MogA |Aquifex aeolicus [TaxId: 63363]
 d2pbqa_ :     (ALA6)  (ILE159)   [view usage] : c.57.1.1 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |MogA-like |automated matches |Aquifex aeolicus [TaxId: 224324]
 d1ihca_ :    (ARG16)  (ARG170)   [view usage] : c.57.1.1 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |MogA-like |Gephyrin N-terminal domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d3k6aa_ :     (LYS3)  (GLU158)   [view usage] : c.57.1.1 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |MogA-like |MogA |Shewanella oneidensis [TaxId: 70863]
 d1uuxa_ :     (LYS7)  (GLN161)   [view usage] : c.57.1.1 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |MogA-like |Plant CNX1 G domain |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
 d3k6ae_ :     (LYS3)  (GLU158)   [view usage] : c.57.1.1 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |MogA-like |MogA |Shewanella oneidensis [TaxId: 70863]
 d3iwta_ :    (LYS14)  (SER178)   [view usage] : c.57.1.0 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |automated matches |automated matches |Sulfolobus tokodaii [TaxId: 111955]
 d2f7wa1 :     (LYS3)  (GLU158)   [view usage] : c.57.1.1 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |MogA-like |MogA |Shewanella oneidensis [TaxId: 70863]
 d3k6af_ :     (ALA4)  (GLU158)   [view usage] : c.57.1.1 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |MogA-like |MogA |Shewanella oneidensis [TaxId: 70863]
 d2pbqc_ :     (LYS5)  (ILE159)   [view usage] : c.57.1.1 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |MogA-like |automated matches |Aquifex aeolicus [TaxId: 224324]
 d3mcib_ :     (ALA6)  (ILE159)   [view usage] : c.57.1.1 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |MogA-like |automated matches |Aquifex aeolicus [TaxId: 224324]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.57