Protein Concepts Dictionary

Tableau information

Concept source:  d3hoja_  amino acid (a.a.) range (TYR93)(LEU248)

nSSEs in this Concept: 14

String of secondary struct.elems. (SSEs) defining this concept: HEHEHEHEHEHEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (TYR93)  (SER102) H1
	  (PRO106)  (ASP111) E2
	  (GLU116)  (GLY126) H3
	  (ASP128)  (ILE133) E4
	  (THR138)  (GLY153) H5
	  (PRO156)  (ASP162) E6
	  (GLU163)  (GLY173) H7
	  (ARG175)  (SER181) E8
	  (GLN194)  (ILE201) H9
	  (VAL206)  (PHE211) E10
	  (ARG216)  (GLY226) H11
	  (ASN228)  (SER234) E12
	  (SER234)  (ASN239) H13
	  (LYS242)  (LEU248) H14

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                
E2      176.8°   E2                                                                                         
H3      -35.5°  143.8°   H3                                                                                  
E4      139.4°  -38.9°  152.0°   E4                                                                           
H5      -33.9°  147.7°  -24.8° -173.3°   H5                                                                    
E6      121.7°  -55.6°  127.7°  -24.5° -150.5°   E6                                                             
H7      -59.5°  123.7°  -73.5°  132.0°  -49.0° -148.5°   H7                                                      
E8      121.2°  -55.7°  101.8°  -54.6°  125.4°  -40.5°  170.5°   E8                                               
H9      -56.2°  126.6°  -81.4°  119.0°  -59.7°  129.6°  -20.4° -168.9°   H9                                        
E10     127.8°  -49.7°   98.8°  -64.2°  118.2°  -57.1°  151.2°  -19.9°  170.9°   E10                                
H11     -75.5°  106.3° -108.1°   88.1°  -89.7°   99.1°  -49.5°  139.6°  -31.4°  152.1°   H11                         
E12     126.5°  -52.4°   91.4°  -81.1°  103.4°  -80.1°  126.6°  -44.5°  146.6°  -24.7°  154.9°   E12                  
H13      66.9° -111.9°   32.4° -129.2°   51.6°  111.1°  -98.2°   74.6° -111.3°   67.3° -140.2°  -59.6°   H13           
H14     -64.8°  115.1°  -99.5°   80.2°  -94.3°   77.8°  -75.5°  113.7°  -55.2°  133.2°  -35.6°  157.7°  126.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.2°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3tsma_ :   (ALA104)  (GLY264)   [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Brucella melitensis [TaxId: 359391]
 d2flia1 :    (ALA50)  (ASN219)   [view usage] : c.1.2.2 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |D-ribulose-5-phosphate 3-epimerase |D-ribulose-5-phosphate 3-epimerase |Streptococcus pyogenes [TaxId: 1314]
 d2flig_ :    (ALA50)  (LEU218)   [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Streptococcus pyogenes [TaxId: 1314]
 d1vhcf_ :    (ALA53)  (GLU213)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |Hypothetical protein HI0047 |Haemophilus influenzae [TaxId: 727]
 d4a2sa_ :    (TYR93)  (GLU248)   [view usage] : c.1.2.4 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Tryptophan biosynthesis enzymes |automated matches |Sulfolobus solfataricus [TaxId: 2287]
 d2flie_ :    (ALA50)  (LEU218)   [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Streptococcus pyogenes [TaxId: 1314]
 d3tc6a_ :    (TYR93)  (GLY249)   [view usage] : c.1.2.4 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Tryptophan biosynthesis enzymes |automated matches |Sulfolobus solfataricus [TaxId: 273057]
 d2flib_ :    (ALA50)  (LEU218)   [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Streptococcus pyogenes [TaxId: 1314]
 d3hoja_ :    (TYR93)  (LEU248)   [view usage] : c.1.2.4 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Tryptophan biosynthesis enzymes |automated matches |Artificial gene [TaxId: 32630]
 d3tsmb_ :   (ALA104)  (GLY264)   [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Brucella melitensis [TaxId: 359391]
 d1a53a_ :    (TYR93)  (LEU248)   [view usage] : c.1.2.4 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Tryptophan biosynthesis enzymes |Indole-3-glycerophosphate synthase, IPGS |Sulfolobus solfataricus [TaxId: 2287]
 d4a2ra_ :    (TYR93)  (GLU248)   [view usage] : c.1.2.4 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Tryptophan biosynthesis enzymes |automated matches |Sulfolobus solfataricus [TaxId: 2287]
 d2flil_ :    (ALA50)  (LEU218)   [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Streptococcus pyogenes [TaxId: 1314]
 d3o6yx_ :    (TYR93)  (GLU248)   [view usage] : c.1.2.4 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Tryptophan biosynthesis enzymes |automated matches |Artificial gene [TaxId: 32630]
 d1i4na_ :    (ALA92)  (TRP250)   [view usage] : c.1.2.4 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Tryptophan biosynthesis enzymes |Indole-3-glycerophosphate synthase, IPGS |Thermotoga maritima [TaxId: 2336]
 d4e38c_ :    (ALA49)  (PRO209)   [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Vibrionales bacterium [TaxId: 391574]
 d3nz1a_ :    (TYR93)  (ILE247)   [view usage] : c.1.2.4 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Tryptophan biosynthesis enzymes |automated matches |Sulfolobus solfataricus [TaxId: 2287]
 d4lnya_ :    (SER92)  (GLU249)   [view usage] : c.1.2.4 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Tryptophan biosynthesis enzymes |automated matches |Artificial gene [TaxId: 32630]
 d1piia2 :    (SER96)  (LEU254)   [view usage] : c.1.2.4 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Tryptophan biosynthesis enzymes |Indole-3-glycerophosphate synthase, IPGS |Escherichia coli [TaxId: 562]
 d3tc7a_ :    (TYR93)  (GLY249)   [view usage] : c.1.2.4 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Tryptophan biosynthesis enzymes |automated matches |Sulfolobus solfataricus [TaxId: 273057]
 d1vc4a_ :    (LEU96)  (GLY254)   [view usage] : c.1.2.4 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Tryptophan biosynthesis enzymes |Indole-3-glycerophosphate synthase, IPGS |Thermus thermophilus [TaxId: 274]
 d2c3za_ :    (SER92)  (ILE247)   [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 2287]
 d2flic_ :    (ALA50)  (LEU218)   [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Streptococcus pyogenes [TaxId: 1314]
 d3nyza_ :    (SER92)  (ILE247)   [view usage] : c.1.2.4 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Tryptophan biosynthesis enzymes |automated matches |Sulfolobus solfataricus [TaxId: 2287]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1