Protein Concepts Dictionary

Tableau information

Concept source:  d3lcha_  amino acid (a.a.) range (GLY7)(ARG296)

nSSEs in this Concept: 21

String of secondary struct.elems. (SSEs) defining this concept: EHEHHHEHEHEHEHEHEHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (GLY7)   (ASP17) E1
	   (LYS24)   (GLY38) H2
	   (ASP40)   (GLY45) E3
	   (GLU50)   (GLN54) H4
	   (SER55)   (GLU69) H5
	   (ALA70)   (LYS75) H6
	   (LYS75)   (GLY81) E7
	   (SER84)   (GLY99) H8
	  (ALA102)  (VAL106) E9
	  (SER114)  (ALA129) H10
	  (PRO133)  (ILE139) E11
	  (THR148)  (LEU158) H12
	  (GLY162)  (SER168) E13
	  (LEU171)  (HIS181) H14
	  (VAL185)  (TYR190) E15
	  (PHE194)  (GLY201) H16
	  (ASP203)  (SER208) E17
	  (TRP215)  (GLY227) H18
	  (GLN230)  (THR249) H19
	  (ARG251)  (ASP263) H20
	  (ASP278)  (ARG296) H21

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                                                                 
H2      157.6°   H2                                                                                                                                          
E3      -46.6°  151.1°   E3                                                                                                                                   
H4       52.2° -145.8°  -44.8°   H4                                                                                                                            
H5      121.8°  -43.7°  164.4°  121.2°   H5                                                                                                                     
H6      140.8°   41.9° -110.5° -140.4°   85.0°   H6                                                                                                              
E7      -61.6°  133.6°  -17.8°  -59.3° -176.4°   92.7°   E7                                                                                                       
H8      104.3°  -63.9°  143.9°  102.7°  -20.6° -105.5°  161.4°   H8                                                                                                
E9      -71.0°  112.4°  -46.3°  -91.0°  147.0°   71.9°  -33.5°  158.3°   E9                                                                                         
H10      83.5°  -90.2°  116.0°   74.8°  -48.5° -132.0°  133.1°  -28.3°  154.3°   H10                                                                                 
E11     -73.9°  100.2°  -66.5° -110.0°  124.2°   67.1°  -56.9°  134.2°  -24.4°  144.0°   E11                                                                          
H12      86.9°  -94.4°  106.2°   61.6°  -59.6° -132.2°  120.7°  -42.6°  152.2°  -20.1°  159.1°   H12                                                                   
E13     -72.3°   97.5°  -74.1° -115.2°  114.8°   70.4°  -66.8°  122.9°  -35.5°  133.4°  -11.6°  151.1°   E13                                                            
H14     122.9°  -69.5°  112.9°   76.6°  -62.1°  -94.0°  115.4°  -60.2°  140.5°  -57.6°  157.8°  -42.8°  164.4°   H14                                                     
E15     -55.8°  110.5°  -68.9° -103.6°  115.3°   88.0°  -67.2°  116.5°  -42.9°  119.0°  -25.4°  134.2°  -17.9° -176.6°   E15                                              
H16     144.1°  -57.1°  107.2°  -92.2°  -77.3°  -63.1°   99.2°  -85.8°  110.6°  -91.6°  123.0°  -77.6°  130.7°  -34.8°  148.2°   H16                                       
E17      -9.8°  149.6°  -50.4°   61.9°  120.4°  133.2°  -63.2°  105.2°  -66.6°   87.8°  -66.1°   93.9°  -63.4°  132.1°  -46.4°  153.3°   E17                                
H18     171.4°  -22.7°  129.8° -132.7°  -63.3°   30.6°  113.5°  -82.0°  101.0° -104.3°   97.6° -101.6°   99.5°  -65.1°  116.3°  -40.7°  162.8°   H18                         
H19      22.3°  165.1°  -24.8°   47.8°  144.1° -125.8°  -39.3°  125.7°  -54.1°  101.9°  -65.0°   99.8°  -67.9°  124.4°  -55.9°  130.2°   25.7° -152.3°   H19                  
H20     -79.4°   84.6° -124.2°  -95.0°   42.5°  122.1° -140.8°   26.7° -136.8°  -29.0°  117.3°  -49.2°  105.9°  -82.2°   94.4° -111.8°  -79.0°  105.7°  101.6°   H20           
H21    -131.9°   43.5° -152.4° -109.3°  -22.0°   83.9°  155.0°  -29.8°  155.8°  -48.8°  140.6°  -51.0°  133.6°  -40.7°  137.0°  -57.3° -134.4°   55.6° -150.2°  -56.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3lcic_ :     (GLY7)  (ARG296)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d2ygyc_ :    (ALA11)  (GLU295)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |automated matches |Escherichia coli [TaxId: 469008]
 d3lcha_ :     (GLY7)  (ARG296)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d2wnqb_ :     (GLY7)  (ARG296)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |automated matches |Escherichia coli [TaxId: 562]
 d2wo5a_ :    (ALA11)  (GLY297)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |automated matches |Escherichia coli [TaxId: 469008]
 d3lcgc_ :     (GLY7)  (ARG296)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d1fdyb_ :     (GLY7)  (MET293)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |N-acetylneuraminate lyase |Escherichia coli [TaxId: 562]
 d3lcwa_ :     (GLY7)  (GLN294)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d3lcld_ :     (GLY7)  (ARG296)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d3lcib_ :     (GLY7)  (ARG296)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d3lcgd_ :     (GLY7)  (ARG296)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d3lcfc_ :     (GLY7)  (ARG296)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d3lbcd_ :     (GLY7)  (ARG296)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d3lcga_ :     (GLY7)  (ARG296)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d3lcfd_ :     (GLY7)  (ARG296)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d4bwlb_ :    (ALA11)  (ARG296)   [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Escherichia coli [TaxId: 562]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1