Protein Concepts Dictionary

Tableau information

Concept source:  d3inla_  amino acid (a.a.) range (ARG34)(ARG329)

nSSEs in this Concept: 23

String of secondary struct.elems. (SSEs) defining this concept: EEHHHHHHEEEHEHEHEHEEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ARG34)   (VAL40) E1
	   (CYS49)   (ASP55) E2
	   (ASP55)   (GLN71) H3
	   (SER74)   (MET79) H4
	   (ASP80)   (ASP98) H5
	  (LEU102)  (GLY111) H6
	  (PRO113)  (TYR118) H7
	  (ASP121)  (TYR139) H8
	  (TYR139)  (PRO145) E9
	  (PHE150)  (HIS156) E10
	  (CYS162)  (TRP168) E11
	  (PRO171)  (GLY186) H12
	  (GLY186)  (ALA194) E13
	  (LEU199)  (ALA211) H14
	  (VAL217)  (PRO222) E15
	  (PHE224)  (SER234) H16
	  (ASP239)  (GLY245) E17
	  (SER246)  (SER260) H18
	  (ARG264)  (GLU268) E19
	  (LYS272)  (MET278) E20
	  (MET283)  (PHE296) H21
	  (SER306)  (GLN311) E22
	  (ASP316)  (ARG329) H23

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                                                                               
E2      129.9°   E2                                                                                                                                                        
H3      -99.9°  -77.6°   H3                                                                                                                                                 
H4       52.9°  -96.9°  -49.9°   H4                                                                                                                                          
H5      -54.2° -148.1°  134.2° -103.8°   H5                                                                                                                                   
H6       85.5°  -74.3° -147.0° -117.2°  -74.7°   H6                                                                                                                            
H7      117.2°   61.1°  -19.0°   64.9° -150.4°  134.9°   H7                                                                                                                     
H8      127.3°   39.8°  -38.8°  -75.3° -170.9°  113.8°  -21.3°   H8                                                                                                              
E9      106.6°  -33.7°  -52.7°  -63.5° -157.9°  -94.5°   43.4°   29.2°   E9                                                                                                       
E10     -68.2° -140.7°  139.2°  117.3°   14.1°   73.0° -150.0° -162.1°  166.6°   E10                                                                                               
E11      36.5° -141.6°  130.9°   89.0°  -20.1°  -69.4°  149.9°  163.7°  138.0°  -33.2°   E11                                                                                        
H12    -129.1°   48.1°  -33.5°  -76.2°  161.2°  122.4°  -14.6°   -9.8°  -38.3° -154.1°  164.1°   H12                                                                                 
E13      65.5° -117.5°  163.4°  117.7°  -30.8°   44.2° -177.4°  157.1°  136.7°  -30.0°  -32.6°  163.1°   E13                                                                          
H14    -118.3°   79.8°   25.5°   73.8°  129.1° -152.8°  -23.8°  -41.9°  -67.2°  126.2°  137.7°  -32.3° -155.6°   H14                                                                   
E15      69.4° -110.2° -169.2° -120.3°  -38.0°   37.1°  171.1°  149.9°  130.6°  -36.4°  -38.6°  156.6°   -7.2° -159.9°   E15                                                            
H16    -119.4°   42.0°  -35.5°  -67.8° -169.5° -114.3°   20.9°    7.9°  -23.9°  168.9° -155.8°   14.8° -158.5°   43.9°  151.4°   H16                                                     
E17      30.4° -135.3°  128.8°   83.2°  -29.0°  -66.4°  147.1°  155.8°  129.0°  -41.7°   -9.0°  159.4°  -35.5°  140.8°  -40.4° -148.0°   E17                                              
H18    -157.4°   35.7°  -63.4° -105.9°  148.4°  100.6°  -44.6°  -30.6°  -51.5°  134.4°  164.9°  -30.8°  132.8°  -52.3°  127.3°  -38.3°  166.8°   H18                                       
E19      24.6° -144.1°  118.8°   76.3°  -29.7°  -77.7°  137.6°  151.6°  129.9°  -43.7°  -12.8°  151.5°  -44.9°  129.4°  -50.5°  143.8°  -11.4°  177.7°   E19                                
E20     -26.4°  116.6°   74.2°   26.6°  -78.2° -103.6°   90.9°  101.7°   86.0°  -92.1°  -62.4°  102.8°  -91.8°   95.3°  -95.3°   94.1°  -56.8°  132.3°  -49.8°   E20                         
H21     149.4°  -68.3°  109.0° -157.7°   96.9°   76.0°  -92.9°  -82.9°  -99.1°   82.9°  113.1°  -81.5°   84.4°  -86.8°   81.3°   90.6° -119.0°   52.4° -125.5° -174.9°   H21                  
E22     -35.1°   96.9°  -80.8°  -32.4°  -88.2°  -85.8°   92.5°   95.1°   71.6° -101.9°  -68.8°  100.0°  -89.9°  105.7°  -90.6°  -87.3°  -60.7° -123.0°  -58.7°  -23.7° -159.1°   E22           
H23    -116.6° -113.1°   99.6°  131.9°   69.5° -107.0°   96.9° -104.1° -132.5°  -58.1°  -89.5°   96.2°  -81.5°   75.5°  -84.5°  110.9°  -98.5°   82.7°  -96.3°  126.7°  -49.3°  149.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3rjla_ :    (LYS52)  (TYR334)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Bacillus licheniformis [TaxId: 279010]
 d4i26a_ :    (SER33)  (LEU329)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pseudomonas fluorescens [TaxId: 294]
 d1a4za_ :    (LYS35)  (TYR315)   [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Aldehyde reductase (dehydrogenase), ALDH |Cow (Bos taurus), mitochondrial [TaxId: 9913]
 d1cw3a_ :    (ARG34)  (TYR315)   [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Aldehyde reductase (dehydrogenase), ALDH |Human (Homo sapiens), mitochondrial [TaxId: 9606]
 d4fqfb_ :    (GLY45)  (TYR315)   [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Aldehyde reductase (dehydrogenase), ALDH |Human (Homo sapiens), mitochondrial [TaxId: 9606]
 d3rhpa_ :   (LYS437)  (MET734)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d4fqfa_ :    (ARG34)  (ARG329)   [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Aldehyde reductase (dehydrogenase), ALDH |Human (Homo sapiens), mitochondrial [TaxId: 9606]
 d4knaa_ :    (PRO16)  (ILE306)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Burkholderia thailandensis [TaxId: 271848]
 d4lihb_ :    (ARG35)  (VAL329)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Burkholderia cenocepacia [TaxId: 216591]
 d3inla_ :    (ARG34)  (ARG329)   [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Aldehyde reductase (dehydrogenase), ALDH |Human (Homo sapiens), mitochondrial [TaxId: 9606]
 d4i9ba_ :    (LYS25)  (ILE322)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Solanum lycopersicum [TaxId: 4081]
 d4i1wa_ :    (SER33)  (PHE315)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pseudomonas fluorescens [TaxId: 294]
 d3n81g_ :    (ARG34)  (ARG329)   [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Aldehyde reductase (dehydrogenase), ALDH |Human (Homo sapiens), mitochondrial [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.82