Protein Concepts Dictionary

Tableau information

Concept source:  d1v4ya3  amino acid (a.a.) range (GLY62)(PHE413)

nSSEs in this Concept: 32

String of secondary struct.elems. (SSEs) defining this concept: EHHEHHHEHHEHHEHHEHEEHEHHHEHEHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (GLY62)   (HIS67) E1
	   (ASP70)   (LYS76) H2
	   (THR81)   (GLY87) H3
	   (THR89)   (THR93) E4
	  (ALA110)  (ASP116) H5
	  (GLU117)  (PHE123) H6
	  (PHE126)  (ALA136) H7
	  (ALA143)  (HIS148) E8
	  (HIS148)  (VAL155) H9
	  (THR164)  (GLY182) H10
	  (GLY185)  (PHE191) E11
	  (PRO193)  (SER199) H12
	  (SER199)  (CYS207) H13
	  (GLY215)  (MET221) E14
	  (ASP223)  (ILE228) H15
	  (ILE228)  (ARG240) H16
	  (VAL244)  (HIS250) E17
	  (ARG261)  (MET273) H18
	  (ASP277)  (TYR283) E19
	  (VAL286)  (THR290) E20
	  (ASP295)  (ALA300) H21
	  (ARG302)  (TRP307) E22
	  (PRO312)  (ARG317) H23
	  (LEU319)  (GLY327) H24
	  (SER329)  (GLN338) H25
	  (ALA340)  (PHE345) E26
	  (GLU349)  (PHE358) H27
	  (MET362)  (LEU368) E28
	  (PRO376)  (THR381) H29
	  (THR381)  (LEU393) H30
	  (LEU398)  (LYS404) H31
	  (GLY407)  (PHE413) H32

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                                                                                                                                              
H2      126.5°   H2                                                                                                                                                                                                                       
H3      133.5°  -99.0°   H3                                                                                                                                                                                                                
E4      -18.0° -122.2°  137.5°   E4                                                                                                                                                                                                         
H5      145.4°  -22.2°  -77.6° -144.3°   H5                                                                                                                                                                                                  
H6      -92.9°  103.3°  -84.4°  -76.8°  106.9°   H6                                                                                                                                                                                           
H7      151.5°   42.5°  -60.8°  161.2°   20.9°  114.5°   H7                                                                                                                                                                                    
E8       -4.9° -125.9°  135.0°  -13.1° -146.1°  -88.5°  155.2°   E8                                                                                                                                                                             
H9       49.4°  -82.5° -166.4°  -39.8° -104.7°  -82.1°  124.0°  -46.5°   H9                                                                                                                                                                      
H10     174.9°   49.1°  -50.3°  163.1°   29.6°   90.8°  -24.1°  174.5°  127.9°   H10                                                                                                                                                              
E11     -40.9° -119.9°  111.3°  -58.9°  123.2° -129.4°  115.0°  -45.8°  -79.0°  136.9°   E11                                                                                                                                                       
H12     -69.7°  140.7°  -81.5°   60.6° -140.5°  -37.4° -137.5°   66.9°   88.8° -115.3°  -95.6°   H12                                                                                                                                                
H13     143.2°   44.7°  -75.2°  126.1°  -43.1°   63.8°  -54.9°  138.7°   97.1°  -37.0°  164.6°   99.2°   H13                                                                                                                                         
E14     -54.5°  112.2°  103.2°  -72.4°  111.5° -141.7°  101.6°  -59.4°  -88.6°  123.2°  -13.7° -105.8°  154.5°   E14                                                                                                                                  
H15      71.5° -161.8°  -62.9°   75.6° -140.1°  -75.8° -120.8°   72.3°  115.0° -112.8°   70.8°  -41.5° -123.7°   74.8°   H15                                                                                                                           
H16     113.3°  -73.6°  -86.0°   95.3°  -78.2°   29.9°  -89.9°  108.4°   81.4°  -68.9°  154.2°   67.2°  -35.6°  167.7° -103.0°   H16                                                                                                                    
E17     -83.7°   81.7°   95.3° -100.3°   77.8° -175.0°   69.4°  -88.3°  -98.4°   92.8°  -46.2° -137.6°  120.9°  -33.6°  -99.6°  155.1°   E17                                                                                                             
H18     109.1°  -85.4°  -80.7°   91.7°  -87.9°   19.0°  -96.9°  104.3°   85.9°  -74.0°  147.9°   55.6°  -44.8°  160.6°   90.7°  -12.2° -165.7°   H18                                                                                                      
E19     -94.4°   62.0°   99.7° -108.2°   60.7°  165.1°   57.1°  -98.3°  -93.0°   81.2°  -62.5° -157.1°  103.2°  -51.5° -118.8°  135.6°  -19.7° -147.3°   E19                                                                                               
E20     -67.3°   69.7° -150.6°  -55.0°   91.5°  -72.6°  112.2°  -64.0°  -18.9°  110.6°  -97.6°   90.6°   78.2° -106.2° -125.7°   64.9° -109.2°   71.6°   98.4°   E20                                                                                        
H21    -123.6°  -71.4°   57.6° -141.5°   54.0°  138.9°  -35.7° -128.5° -134.7°   54.2°  -82.8°  134.3°  -89.8°   69.2°   97.1° -123.0°  -42.8° -126.5°  -42.2° -135.0°   H21                                                                                 
E22    -100.3°   38.5°  123.9°  -88.9°   58.7°  -77.3°   79.7°  -97.4°  -51.0°   77.1° -121.4°  109.8°   49.0° -123.6° -151.3°   53.9°  106.8°   65.4°   88.7°  -33.9°  109.7°   E22                                                                          
H23     109.4° -118.9°  -26.3°  118.5°  -96.7°   95.9°  -76.6°  111.9°  158.2°  -73.6°   85.8°   77.0° -101.5°   79.6°   44.2° -107.5°   81.9°  -99.2°  -93.8°  167.5°   57.2° -149.9°   H23                                                                   
H24     -25.5°  104.6°  145.9°  -37.1°  120.7° -113.1°  127.0°  -28.2°   44.2°  149.4°  -34.9°  -95.0°  138.4°  -44.8°  -92.2°  124.1°  -64.7°  125.0°   71.1°   62.7° -107.5°   89.4°  119.8°   H24                                                            
H25    -103.0°   38.7° -120.5°  -90.7°   58.0°  -74.4°   78.8°  -99.8°  -53.6°   74.7° -125.3° -107.8°   45.4° -127.6° -149.3°  -50.2°  109.9°  -61.8°   91.4°  -36.0°  110.1°    4.0° -146.7°   93.0°   H25                                                     
E26     106.3° -121.4°   29.4°  115.8°  -99.2°   96.9°  -79.0°  108.9°  155.3°  -76.6°   82.8°   76.3° -104.6°   76.9°   42.1° -109.8°  -80.6° -101.2°  -93.4°  166.9°   58.0°  153.0°    3.2° -116.7° -149.8°   E26                                              
H27     126.4°  -78.5°  -66.1°  109.4°  -75.2°   33.8°  -80.7°  121.8°  101.2°  -57.0°  161.2°   65.7°  -34.0°  166.6°   92.6°  -19.9° -149.9°  -17.9° -135.8°   84.8° -108.7°  -69.7°  -88.2°  142.6°  -65.8°  -90.7°   H27                                       
E28     -62.9°   65.2°  151.1°  -66.8°   82.5° -121.8°   94.4°  -63.9°   41.2°  112.1°  -63.5°  126.5°  103.9°  -65.0° -131.1°  110.4°  -59.8°  119.6°  -51.8°   49.4°  -93.7°  -58.8° -141.0°   39.4°   62.8° -139.2°  128.3°   E28                                
H29     147.0°  -84.0°  -28.3°  138.0°  -67.4°   64.7°  -59.2°  144.9° -139.9°  -38.1°  139.4°   78.3°  -49.2°  131.4°   79.2°  -58.5°  116.7°  -55.5°  113.3° -122.3°   74.3°  -98.0°  -53.6° -171.4°  -94.3°   56.6°  -38.9° -149.2°   H29                         
H30     105.3° -119.8°   32.3°  116.3°   97.9° -102.3°  -77.2°  108.3°  154.7°  -77.2°   79.1°  -80.7° -107.3°   72.5°  -44.7° -114.8°   75.2° -106.4°   88.2° -170.4°   53.9°  154.3°   -7.3° -113.5°  151.6°   -5.4°  -95.4°  133.9°   60.3°   H30                  
H31      58.4°  -82.5° -149.5°   44.0° -103.9°  -65.9° -124.8°   54.5°  -16.9°  120.4°  -93.5°   78.7°   85.3° -104.3°  112.7°   65.1° -114.9°   69.0° -107.5°  -13.0° -146.9°  -45.5°  155.6°   59.4°  -47.0°  154.3°   84.7°  -56.2° -123.6°  157.4°   H31           
H32      56.1° -102.6° -128.9°   38.1° -121.2°  -45.8° -140.9°   51.2°  -38.4° -125.4°   96.9°   53.3°  -88.7°  110.2°   89.8°   57.6° -133.2°   55.9° -131.3°  -37.5° -172.5°  -64.1°  130.3°   69.2°  -64.0°  129.4°   73.7°  -79.5° -110.0°  133.5°  -25.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1rjqa3 :    (GLY62)  (PHE413)   [view usage] : c.1.9.11 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |D-aminoacylase, catalytic domain |N-acyl-D-aminoacid amidohydrolase, catalytic domain |Alcaligenes faecalis [TaxId: 511]
 d1v4ya3 :    (GLY62)  (PHE413)   [view usage] : c.1.9.11 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |D-aminoacylase, catalytic domain |N-acyl-D-aminoacid amidohydrolase, catalytic domain |Alcaligenes faecalis [TaxId: 511]
 d1m7ja3 :    (GLY62)  (PHE413)   [view usage] : c.1.9.11 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |D-aminoacylase, catalytic domain |N-acyl-D-aminoacid amidohydrolase, catalytic domain |Alcaligenes faecalis [TaxId: 511]
 d3gipa2 :    (GLY61)  (PHE412)   [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Bordetella bronchiseptica [TaxId: 518]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1