################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 17:03:21 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/xia.html
################################################################################################
#====================================
# Aligned_structures: 6
#   1: 1bxba.pdb
#   2: 1dxia.pdb
#   3: 1xima.pdb
#   4: 1xyaa.pdb
#   5: 4xiaa.pdb
#   6: 6xia.pdb
#
# Length:        400
# Identity:      162/400 ( 40.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    253/400 ( 63.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           21/400 (  5.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bxba.pdb               1  -MYEPKPEHRFTFGLWTVGNVGRDPFGDAVRERLDPVYVVHKLAELGAYGVNLHDEDLIP   59
1dxia.pdb               1  MSFQPTPEDRFTFGLWTVGWQGRDPFGDATRPALDPVETVQRLAELGAYGVTFHDDDLIP   60
1xima.pdb               1  --VQATREDKFSFGLWTVGWQARDAFGDATRTALDPVEAVHKLAEIGAYGITFHDDDLVP   58
1xyaa.pdb               1  -SYQPTPEDRFTFGLWTVGWQGRDPFGDATRPALDPVETVQRLAELGAHGVTFHDDDLIP   59
4xiaa.pdb               1  --VQPTPADHFTFGLWTVGWTGADPFGVATRANLDPVEAVHKLAELGAYGITFHDNDLIP   58
6xia.pdb                1  -NYQPTPEDRFTFGLWTVGWEGRDPFGDATRTALDPVESVRRLAELGAHGVTFHDDDLIP   59
                              qptped FtFGLWTVGw grDpFGdAtR  LDPVe V  LAElGA G tfHD DLiP

1bxba.pdb              60  RGTPPAERDQIVRRFKKALDETGLKVPMVTANLFSDPAFKDGAFTSPDPWVRAYALRKSL  119
1dxia.pdb              61  FGSSDTERESHIKRFRQALDATGMTVPMATTNLFTHPVFKDGGFTANDRDVRRYALRKTI  120
1xima.pdb              59  FGSDAQTRDGIIAGFKKALDETGLIVPMVTTNLFTHPVFKDGGFTSNDRSVRRYAIRKVL  118
1xyaa.pdb              60  FGSSDTERESHIKRFRQALDATGMTVPMATTNLFTHPVFKDGGFTANDRDVRRYALRKTI  119
4xiaa.pdb              59  FDATAAEREKILGDFNQALADTGLKVPMVTTNLFSHPVFKDGGFTSNDRSIRRFALAKVL  118
6xia.pdb               60  FGSSDSERYEHVKRFRQALDDTGMKVPMATTNLFTHPVFKDGGFTANDRDVRRYALRKTI  119
                           fg    eR      F  ALd TG  VPM TtNLF hPvFKDGgFT nDr vRryAlrK  

1bxba.pdb             120  ETMDLGAELGAEIYVVWPGREGAEVEATGKARKVWDWVREALNFMAAYAEDQGYGYRFAL  179
1dxia.pdb             121  GNIDLAAELGAKTYVAWGGREGAESGGAKDVRDALDRMKEAFDLLGEYVTAQGYDLRFAI  180
1xima.pdb             119  RQMDLGAELGAKTLVLWGGREGAEYDSAKDVSAALDRYREALNLLAQYSEDRGYGLRFAI  178
1xyaa.pdb             120  RNIDLAVELGAKTYVAWGGREGAESGAAKDVRVALDRMKEAFDLLGEYVTSQGYDTRFAI  179
4xiaa.pdb             119  HNIDLAAEMGAETFVMWGGREGSEYDGSKDLAAALDRMREGVDTAAGYIKDKGYNLRIAL  178
6xia.pdb              120  RNIDLAVELGAETYVAWGGREGAESGGAKDVRDALDRMKEAFDLLGEYVTSQGYDIRFAI  179
                              DL  ElGA t V WgGREGaE    kd   alDr  Ea      Y    GY  RfA 

1bxba.pdb             180  EPKPNEPRGDIYFATVGSMLAFIHTLDRPERFGLNPEFAHETMAGLNFVHAVAQALDAGK  239
1dxia.pdb             181  EPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQMAGLNFPHGIAQALWAGK  240
1xima.pdb             179  EPKPNEPRGDILLPTAGHAIAFVQELERPELFGINPETGHEQMSNLNFTQGIAQALWHKK  238
1xyaa.pdb             180  EPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQMAGLNFPHGIAQALWAGK  239
4xiaa.pdb             179  EPKPNEPRGDIFLPTVGHGLAFIEQLEHGDIVGLNPETGHEQMAGLNFTHGIAQALWAEK  238
6xia.pdb              180  EPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQMAGLNFPHGIAQALWAGK  239
                           EPKPNEPRGDI lpTvGh lAFi  Lerpe  G NPE gHEqMagLNF hgiAQALwa K

1bxba.pdb             240  LFHIDLNDQRMSRFDQDLRFGSENLKAAFFLVDLLESS-G-----YQGPRHFDAHALRTE  293
1dxia.pdb             241  LFHIDLNGQSGIKYDQDLRFGAGDLRAAFWLVDLLETA-G-----YEGPRHFDFKPPRTE  294
1xima.pdb             239  LFHIDLNGQHGPKFDQDLVFGHGDLLNAFSLVDLLENGP-DGAPAYDGPRHFDYKPSRTE  297
1xyaa.pdb             240  LFHIDLNGQSGIKYDQDLRFGAGDLRAAFWLVDLLESA-G-----YEGPRHFDFKPPRTE  293
4xiaa.pdb             239  LFHIDLNGQRGIKYDQDLVFGHGDLTSAFFTVDLLENGFPNGGPKYTGPRHFDYKPSRTD  298
6xia.pdb              240  LFHIDLNGQNGIKYDQDLRFGAGDLRAAFWLVDLLESA-G-----YSGPRHFDFKPPRTE  293
                           LFHIDLNgQ g k DQDL FG gdL  AF lVDLLE         Y GPRHFD kp RTe

1bxba.pdb             294  DEEGVWAFARGCMRTYLILKERAEAFREDPEVKELLAAYYQEDPAALALL--G-PYSREK  350
1dxia.pdb             295  DFDGVWASAAGCMRNYLILKDRAAAFRADPEVQEALRAAR---LDQLAQPTAA--DGLDA  349
1xima.pdb             298  DYDGVWESAKANIRMYLLLKERAKAFRADPEVQEALAASK---VAELKTPTLNPGEGYAE  354
1xyaa.pdb             294  DIDGVWASAAGCMRNYLILKERAAAFRADPEVQEALRASR---LDELAQPTAA--DGVQE  348
4xiaa.pdb             299  GYDGVWDSAKANMSMYLLLKERALAFRADPEVQEAMKTSG---VFELGETTLNAGESAAD  355
6xia.pdb              294  DFDGVWASAAGCMRNYLILKERAAAFRADPEVQEALRASR---LDELARPTAA--DGLQA  348
                           d dGVW sA   mr YL LKeRA AFRaDPEVqEal a        L             

1bxba.pdb             351  AEALKR---AELPLEAKRRRGYALERLDQLAVEYLLGVRG  387
1dxia.pdb             350  LLADR-AAFEDFDVDAAAARGMAFEHLDQLAMDHLLGARG  388
1xima.pdb             355  LLADR-SAFEDYDADAVGAKGFGFVKLNQLAIEHLLGAR-  392
1xyaa.pdb             349  LLADR-TAFEDFDVDAAAARGMAFERLDQLAMDHLLGAR-  386
4xiaa.pdb             356  LMNDS-ASFAGFDAEAAAERNFAFIRLNQLAIEHLLGSR-  393
6xia.pdb              349  LLDDR-SAFEEFDVDAAAARGMAFERLDQLAMDHLLGARG  387
                           l  d        d  A   rg af  L QLA  hLLG R 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################