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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 00:02:37 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/urease.html
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#====================================
# Aligned_structures: 2
#   1: 1ubpc.pdb
#   2: 2kauc.pdb
#
# Length:        570
# Identity:      364/570 ( 63.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    364/570 ( 63.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            5/570 (  0.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ubpc.pdb               1  MKINRQQYAESYGPTVGDEVRLADTDLWIEVEKDYTTYGDEVNFGGGKVLREGMGENGTY   60
2kauc.pdb               1  SNISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQGQM-   59
                             I RQ YA   GPTVGD VRLADT LWIEVE D TTYG EV FGGGKV R GMG     

1ubpc.pdb              61  TRTENVLDLLLTNALILDYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATE  120
2kauc.pdb              60  LAAD-CVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVT--IPIGAATE  116
                                  DL LTNALI D  GI KADIGVKDG I  IGK GNPDI   VT     G ATE

1ubpc.pdb             121  VIAAEGKIVTAGGIDTHVHFINPDQVDVALANGITTLFGGGTGPAEGSKATTVTPGPWNI  180
2kauc.pdb             117  VIAAEGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYI  176
                           VIAAEGKIVTAGGIDTH H I P Q   AL  G TT  GGGTGPA G  ATT TPGPW I

1ubpc.pdb             181  EKMLKSTEGLPINVGILGKGHGSSIAPIMEQIDAGAAGL-IHEDWGATPASIDRSLTVAD  239
2kauc.pdb             177  SRMLQAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLKIHEDWGATPAAIDCALTVAD  236
                             ML     LP N G LGKG  S      EQ  AG  GL IHEDWGATPA ID  LTVAD

1ubpc.pdb             240  EADVQVAIHSDTLNEAGFLEDTLRAINGRVIHSFHVEGAGGGHAPDIMAMAGHPNVLPSS  299
2kauc.pdb             237  EMDIQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSS  296
                           E D QVA HSDTLNE GF EDTL AI GR IH FH EGAGGGHAPDI     HPN LPSS

1ubpc.pdb             300  TNPTRPFTVNTIDEHLDMLMVCHHLKQNIPEDVAFADSRIRPETIAAEDILHDLGIISMM  359
2kauc.pdb             297  TNPTLPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLT  356
                           TNPT P T NTIDEHLDMLMVCHHL   I EDVAFA SRIR ETIAAED LHDLG  S  

1ubpc.pdb             360  STDALAMGRAGEMVLRTWQTADKMKKQRGPLAEEKNGSDNFRLKRYVSKYTINPAIAQGI  419
2kauc.pdb             357  SSDSQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGI  416
                           S D  AMGR GE  LRTWQ A  MK QRG LAEE    DNFR KRY  KYTINPA   GI

1ubpc.pdb             420  AHEVGSIEEGKFADLVLWEPKFFGVKADRVIKGGIIAYAQIGDPSASIPTPQPVMGRRMY  479
2kauc.pdb             417  AHEVGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPVHYRPMF  476
                           AHEVGSIE GK ADLV W P FFGVK   VIKGG IA A  GD  ASIPTPQPV  R M 

1ubpc.pdb             480  GTVGDLIHDTNITFMSKSSIQQGVPAKLGLKRRIGTVKNCRNIGKKDMKWNDVTTDIDIN  539
2kauc.pdb             477  GALGSARHHCRLTFLSQAAAANGVAERLNLRSAIAVVKGCRTVQKADMVHNSLQPNITVD  536
                           G  G   H    TF S      GV   L L   I  VK CR   K DM  N     I   

1ubpc.pdb             540  PETYEVKVDGEVLTCEPVKELPMAQRYFLF  569
2kauc.pdb             537  AQTYEVRVDGELITSEPADVLPMAQRYFLF  566
                             TYEV VDGE  T EP   LPMAQRYFLF


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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