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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:59:14 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/tubulin.html
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#====================================
# Aligned_structures: 2
#   1: 1tuba.pdb
#   2: 1tubb.pdb
#
# Length:        447
# Identity:      167/447 ( 37.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    167/447 ( 37.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           27/447 (  6.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1tuba.pdb               1  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQM---PSDKTIGGGDDSFNTFFSETG   57
1tubb.pdb               1  MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLE----RINVYYNE-AA   55
                           MRE   I  GQ G QIG   WE    EHGI P G                          

1tuba.pdb              58  AG--KHVPRAVFVDLEPTVIDEVRTGTY-RQLFHPEQLITG-KEDAANNYARGHYTIGKE  113
1tubb.pdb              56  --GNKYVPRAILVDLEPGTMDSVR-SG-PFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAE  111
                               K VPRA  VDLEP   D VR                     A NN A GHYT G E

1tuba.pdb             114  IIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYP  173
1tubb.pdb             112  LVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVP  171
                             D VLD  RK    C  LQGF   HS GGGTGSG   LL       Y       FS  P

1tuba.pdb             174  APQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQ  233
1tubb.pdb             172  SPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSA  231
                            P VS  VVEPYN  L  H   E  D     DNEA YDIC R L    PTY  LN L   

1tuba.pdb             234  IVSSITASLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITN  293
1tubb.pdb             232  TMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQ  291
                             S  T  LRF G LN DL     N VP PR HF     AP  S        L V E T 

1tuba.pdb             294  ACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKV  353
1tubb.pdb             292  QMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKT  351
                             F   N M  CDPRHG Y       RG    K V         K    FV W P   K 

1tuba.pdb             354  GINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM  413
1tubb.pdb             352  AVCDIPPR--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGM  403
                                PP                   N TAI E   R    F  M    AF HWY GEGM

1tuba.pdb             414  EEGEFSEAREDMAALEKDYEEVGVDSV  440
1tubb.pdb             404  DEMEFTEAESNMNDLVSEYQQYQD---  427
                            E EF EA   M  L   Y        


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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